Psyllid ID: psy17058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
Protein Sequence
MKFHTSAGIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH
Secondary Structure (PSIPRED)
cEEEEcccccccEEcccEEEccccccEEEEEEccEEEEEEEccccEEEEEEccEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEccccccEEEcccEEEEcccccEEEEEEccccccEEEEEEccEEcccccccccccEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccccEEEEcccccEEEEccccEEEEEEccccccccEEEEEcccccccccccEEEEEcccEEEEccccccccEEEEEEEEccccEEEEEEEEEEEEccEEEEcccccEEEcccccEEEEEEEEEEcccEEEEEEccEEcccccccEEEccccEEEEccccccccEEEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccEEEEEcccEEEEcccEEEEcccccEEEEEEEEcccccEEEEEEccccccccEEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccEEEccccccEEEEEcccEEEEEEEEEEccccEEEEEEEEccEcEcccccEEEEccccccccEEEEEccccccccccEEcccccEEEEcccEEEEEEEccccccEEEEEEccEEEccccccccEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEcccccccccccccEEEEcccEEEEEEEccccccccEEEEEEccEEccccccEEEEEcccEEEEEEcccccccEEEEEEEEcccccccEEEEEEEccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEccccccEEEEccccEEEEEEcEcccccEEEEEEEEcccccEEEEEEEEEcccccccccEEcccEEEEEEEEccccccccccEEEEEEcccccEEEEcccEEEEccEEEEEEcccEEEEEEEEEcccccEEEEEEcccEccccEEccccEEEEEcccc
Coil and Loop (DISEMBL)
mkfhtsagikptssnqgnaltttpsrqetnaFAGEVTQFVSaenhevtvyeggdaelkcntyyapgrwmWLNFYSFLSLIIICLAylspqanevqvtprqqsapegsqvtiecksndpsatikwskdnqeqlppnmiaGETLIINGITKADEGVYICSIQnaqgnvfqdyasiqvdkrempririhpnasqtfivgdrADIQCVleagepsptqtwirpdndgkfgpdvEVYQELGvlrfnniatgdegkytciaensagkEVMNAYIHVLtlpavtitpseyvsvrpgepltleceatgrpmptvswvkyiapfdrnlerdeltsRAVYTIASvresdagqykcigknsagteEKVITVAVEhrpeygpisprpgadilpdgdeyyrpepeegeyvyavgsnasiscsveppritlrpvrqtvkpgdianircsaigatpisirwqplqgyfpshvveyngelrlgphkh
Flexible Loop (DISEMBL)
mkfhtsagikptssnqgnalTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIhpnasqtfivgDRADIQCVLEAgepsptqtwirpdndgkFGPDVEVYQELGVLRFnniatgdegKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEceatgrpmptvsWVKYIAPfdrnlerdelTSRAVYTIasvresdagqykcigknsagteEKVITVAVehrpeygpisprpgadilpdGDEYYRPEPEEGEYVYAVGSNasiscsveppritlrpvrqtvkpgdiANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGelrlgphkh
Low Complexity Region (SEG)
MKFHTSAGIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILpdgdeyyrpepeegeyVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH
Disordered region (IsUnstruct)
********************************AGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLS***********************************************MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE***TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE*******************************EYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGEL*******
Disordered Region (DISOPRED)
********I*PTSSNQGNALTTTPSRQETNAF*GEV**********VTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAY*SP************SAPEGSQVTIECKSNDPSATIKWSKDN************TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN**********YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY*****************VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYF***********RL*****
Disordered Region (DISEMBL)
***********************PSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQA******************TIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH
Disordered Region (DISPRO)
**FHTSAGIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFHTSAGIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	471	2.2.26 [Sep-21-2011]
Q9NR99	2828	Matrix-remodeling-associa	yes	N/A	0.554	0.092	0.296	9e-26
P98160	4391	Basement membrane-specifi	no	N/A	0.547	0.058	0.295	2e-23
Q3UQ28	1475	Peroxidasin homolog OS=Mu	yes	N/A	0.558	0.178	0.289	5e-23
P97527	1099	Contactin-5 OS=Rattus nor	no	N/A	0.643	0.275	0.282	2e-22
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.547	0.050	0.287	4e-22
P68500	1098	Contactin-5 OS=Mus muscul	no	N/A	0.628	0.269	0.285	9e-22
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.719	0.229	0.260	2e-21
O94898	1065	Leucine-rich repeats and	no	N/A	0.600	0.265	0.300	1e-20
Q3V1M1	2594	Immunoglobulin superfamil	no	N/A	0.562	0.102	0.245	1e-20
Q6WRI0	2623	Immunoglobulin superfamil	no	N/A	0.539	0.096	0.287	2e-20

>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5 PE=2 SV=3

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 138/297 (46%), Gaps = 36/297 (12%)

Query: 97   TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP--------NMIAGETLIINGI 147
            +PR+     G  + ++C  S DP   I W   ++  +           + A  TL++  +
Sbjct: 2152 SPRRTDVRYGGTLKLDCSASGDPWPRILWRLPSKRMIDALFSFDSRIKVFANGTLVVKSV 2211

Query: 148  TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP--NASQTFIVGDRADIQCVL 205
            T  D G Y+C  +N  G+   DY  ++VD    P    H   N  + F  GD   + CV 
Sbjct: 2212 TDKDAGDYLCVARNKVGD---DYVVLKVDVVMKPAKIEHKEENDHKVFYGGD-LKVDCV- 2266

Query: 206  EAGEPSPTQTWIRPD----------NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
              G P+P  +W  PD          +D        V    G L FN +   +EG YTC A
Sbjct: 2267 ATGLPNPEISWSLPDGSLVNSFMQSDDSGGRTKRYVVFNNGTLYFNEVGMREEGDYTCFA 2326

Query: 256  ENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP--GEPLTLECEATGRPMPTVSWVKYIA 313
            EN  GK+ M   + V+T PA TI    Y++V+   G+ +T+ CEA G PMP V+W   ++
Sbjct: 2327 ENQVGKDEMRVRVKVVTAPA-TIRNKTYLAVQVPYGDVVTVACEAKGEPMPKVTW---LS 2382

Query: 314  PFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
            P ++ +    E+ ++       I   + SD+G Y C+ +NSAG + K + + V  +P
Sbjct: 2383 PTNKVIPTSSEKYQIYQDGTLLIQKAQRSDSGNYTCLVRNSAGEDRKTVWIHVNVQP 2439

Homo sapiens (taxid: 9606)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 94   VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            VQVTP+ ++   G+ V   C   +D    ++W K+  +  P + +    L I  + ++ +
Sbjct: 3402 VQVTPQLETKSIGASVEFHCAVPSDRGTQLRWFKEGGQLPPGHSVQDGVLRIQNLDQSCQ 3461

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS-QTFIVGDRADIQCVLEAGEPS 211
            G YIC    A G   +  AS Q+  + +P + I+   S QT +VG   + +C L  G+P 
Sbjct: 3462 GTYIC---QAHGPWGKAQASAQLVIQALPSVLINIRTSVQTVVVGHAVEFEC-LALGDPK 3517

Query: 212  PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
            P  TW +     + G    + Q  GV+R  ++   D G+Y C A N+AG    +  + V 
Sbjct: 3518 PQVTWSKVGGHLRPG----IVQSGGVVRIAHVELADAGQYRCTATNAAGTTQSHVLLLVQ 3573

Query: 272  TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
             LP +++ P E V V  G      C A+G P P +SW K     D +L  D      +  
Sbjct: 3574 ALPQISM-PQE-VRVPAGSAAVFPCIASGYPTPDISWSK----LDGSLPPDSRLENNMLM 3627

Query: 332  IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
            + SVR  DAG Y C   N  G  +    + V  R
Sbjct: 3628 LPSVRPQDAGTYVCTATNRQGKVKAFAHLQVPER 3661

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 98  PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQE-----QLPPNMIAGETLIINGITKAD 151
           P+      G+ V   C++  +P   I W ++N E         N++   TL+I    +AD
Sbjct: 249 PQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQEAD 308

Query: 152 EGVYICSIQNAQGNVFQDYASIQ-VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
           EGVY C  +N  G       +++ +     P   I P  ++  +VG+   ++C    G P
Sbjct: 309 EGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEV-LVGESVTLECS-ATGHP 366

Query: 211 SPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
            P  TW R D       P V +    G L   N+A  D G+YTC A NS       A+I 
Sbjct: 367 LPQITWTRGDRTPLPIDPRVNITPS-GGLYIQNVAQSDSGEYTCFASNSVDSIHATAFII 425

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAV 329
           V  LP  T+TP   V +  G+ +  +C A G P P ++W K  +    +  R  + S   
Sbjct: 426 VQALPQFTVTPQSRVVIE-GQTVDFQCAAKGHPQPVIAWTKGGSQLSVD-RRHLVLSSGT 483

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
             I+ V   D GQY+C   N  G+++ V  + V+ R
Sbjct: 484 LRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPR 519

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|P97527|CNTN5_RAT Contactin-5 OS=Rattus norvegicus GN=Cntn5 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 152/364 (41%), Gaps = 61/364 (16%)

Query: 136 MIAGET--LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-------MPRIRIH 186
            I+ ET  L I+ +  +D G YIC ++NA  N         +  R         P+I +H
Sbjct: 246 FISQETGNLYISKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVH 305

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
              + T   G    ++C    G P PT TW++   +G       + +   VL   N+   
Sbjct: 306 FPTTVTAAKGTTVKMEC-FALGNPVPTITWMK--VNGYIPSKSRLRKSQAVLEIPNLQLD 362

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
           D G Y C AENS GK      + + T P      ++   +  G PL  EC+ATG+P PT 
Sbjct: 363 DAGIYECTAENSRGKNSFRGQLQIYTYPHWVQKLND-TQLDSGSPLQWECKATGKPRPTY 421

Query: 307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-----TEEKVIT-- 359
            W+K  AP       D  T+  V  I SV +SDAG Y+C+ +N  G      E K++   
Sbjct: 422 RWLKNGAPLLPQSRVD--TANGVLAIHSVNQSDAGMYQCLAENKYGAIYASAELKILASP 479

Query: 360 -------------------VAVEHRPEYGP---ISPRPGAD---------ILPDGDE--Y 386
                              V +E +P+  P   IS R G           ILPDG     
Sbjct: 480 PSFELNQVKKSIIVTKDREVLIECKPQGSPKPAISWRKGDKAVRGNKRIAILPDGSLRIL 539

Query: 387 YRPEPEEGEYV---YAVGSNASISCSV---EPPRITLRPVRQTVKPGDIANIRCSAIGAT 440
              + +EG+Y+     +  +A I  SV   EP RI L P R  +  G+   + C A+  +
Sbjct: 540 NASKADEGKYICQGVNIFGSAEIIASVSVKEPTRIELTPKRTELTVGESIVLNCKAMHDS 599

Query: 441 PISI 444
            + +
Sbjct: 600 SLDV 603

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons. Probably involved in neuronal activity in the auditory system.

Rattus norvegicus (taxid: 10116)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 129/285 (45%), Gaps = 27/285 (9%)

Query: 107  SQVTIECKS-NDPSATIKWSKDNQEQLPPNMIA----GETLIINGITKADEGVYICSIQN 161
            S +T+EC+S   P  TI+W KD Q   P + +     G  L I     +D G Y+C   N
Sbjct: 2655 STLTLECESWAVPPPTIRWYKDGQPVTPSSRLQVLGEGRLLQIQPTQVSDSGRYLCVATN 2714

Query: 162  AQGNVFQDY-----------------ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
              G   QD+                 A+ ++  RE    R      +  +  + A + C 
Sbjct: 2715 VAGEDDQDFNVLIQVPPMFQKVGDFSAAFEILSREE-EARGGVTEYREIVENNPAYLYCD 2773

Query: 205  LEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
              A  P P  TW R D     G +V V Q   VL+   +   + G+Y+C A N  G++ +
Sbjct: 2774 TNA-IPPPDLTWYREDQPLSAGDEVSVLQGGRVLQIPLVRAENAGRYSCKASNEVGEDWL 2832

Query: 265  NAYIHVLTLPAV---TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER 321
            +  + VLT P +   T    E V+V     ++L+C A G P+PT+SW++   PF  +   
Sbjct: 2833 HYELLVLTPPVILGDTEELVEEVTVNASSTVSLQCPALGNPVPTISWLQNGLPFSPSPRL 2892

Query: 322  DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
              L    V  +++   +DA  Y C+ +N AG+ EK+ T+ V+  P
Sbjct: 2893 QVLEDGQVLQVSTAEVADAASYMCVAENQAGSAEKLFTLRVQVPP 2937

Homo sapiens (taxid: 9606)

>sp|P68500|CNTN5_MOUSE Contactin-5 OS=Mus musculus GN=Cntn5 PE=1 SV=2

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 147/357 (41%), Gaps = 61/357 (17%)

Query: 136 MIAGET--LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-------MPRIRIH 186
            I+ ET  L I+ +  +D G YIC ++NA  N         +  R         P+I +H
Sbjct: 245 FISQETGNLYISKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVH 304

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
              + T   G    ++C    G P PT TW++   +G       + +   VL   N+   
Sbjct: 305 FPFTVTAAKGTTVKMEC-FALGNPVPTITWMK--VNGYIPSKSRLRKSQAVLEIPNLQLD 361

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
           D G Y C AENS GK      + + T P      ++   +  G PL  EC+ATG+P PT 
Sbjct: 362 DAGIYECTAENSRGKNSFRGQLQIFTYPHWVQKLND-TQLDSGSPLQWECKATGKPRPTY 420

Query: 307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-----TEEKVIT-- 359
            W+K  AP       D  T   +  I SV +SDAG Y+C+ +N  G      E K++   
Sbjct: 421 RWLKNGAPLLPQSRVD--TVNGILAIQSVNQSDAGMYQCLAENKYGAIYASAELKILASP 478

Query: 360 -------------------VAVEHRPEYGP---ISPRPGAD---------ILPDGDE--Y 386
                              V +E  P+  P   IS R G           ILPDG     
Sbjct: 479 PSFELNQVKKSIIVTKDRGVLIECEPQGSPKPAISWRKGDKAVRANKRIAILPDGSLRIL 538

Query: 387 YRPEPEEGEYV---YAVGSNASISCSV---EPPRITLRPVRQTVKPGDIANIRCSAI 437
              + +EG+Y+     +  +A I  S+   EP RI L P R  +  G+   + C AI
Sbjct: 539 NASKADEGKYICQGVNIFGSAEIIASLSVKEPTRIELTPKRTELTVGESIVLNCKAI 595

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons (By similarity). Involved in neuronal activity in the auditory system.

Mus musculus (taxid: 10090)

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 151/364 (41%), Gaps = 25/364 (6%)

Query: 98  PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQE-----QLPPNMIAGETLIINGITKAD 151
           P+      G+ V   C++  +P   I W ++N E         N++   TL+I    + D
Sbjct: 252 PQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETD 311

Query: 152 EGVYICSIQNAQGNVFQDYASIQ-VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
           +G+Y C  +N  G V     +++       P   I P  ++  +VG+   ++C    G P
Sbjct: 312 QGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEV-LVGESVTLECS-ATGHP 369

Query: 211 SPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
            P  +W R D       P V +    G L   N+  GD G+Y C A N+       A+I 
Sbjct: 370 PPRISWTRGDRTPLPVDPRVNITPS-GGLYIQNVVQGDSGEYACSATNNIDSVHATAFII 428

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAV 329
           V  LP  T+TP + V +  G+ +  +CEA G P P ++W K  +    +  R  + S   
Sbjct: 429 VQALPQFTVTPQDRVVIE-GQTVDFQCEAKGNPPPVIAWTKGGSQLSVD-RRHLVLSSGT 486

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR--PEYGPISPRPGADILPDGDEYY 387
             I+ V   D GQY+C   N  G+++ V  + V+ R  P +  I   P    +  G    
Sbjct: 487 LRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASI---PSDTTVEVGANVQ 543

Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRP----VRQTVKPGDIANIRCSA---IGAT 440
            P   +GE   A+  N       E  +  + P        V P D     C A   IG+ 
Sbjct: 544 LPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGSA 603

Query: 441 PISI 444
            +S+
Sbjct: 604 SVSM 607

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 140/326 (42%), Gaps = 43/326 (13%)

Query: 70  WLNFYSFLSLII---ICLAYLSPQANEVQVTPRQQSAPEGSQVTIEC----KSNDPSATI 122
           WL   S L++ +   +C  +L PQ   ++  P    A  G  VT+ C     S+ P +T+
Sbjct: 476 WLAGQSILNVDLKDFVCDDFLKPQ---IRTHPETIIALRGMNVTLTCTAVSSSDSPMSTV 532

Query: 123 KWSKDNQ---EQLPPNMI-----AGETLIINGITK------ADEGVYICSIQNAQGNVFQ 168
            W KD++   +    N +     AGE L    I         DEG Y C + N  G+ + 
Sbjct: 533 -WRKDSEILYDVDTENFVRYWQQAGEALEYTSILHLFNVNFTDEGKYQCIVTNHFGSNYS 591

Query: 169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD 228
             A + V+  EMP     P    T   G  A ++C  E G P+P  +W +   DG  G D
Sbjct: 592 QKAKLTVN--EMPSFLKTP-MDLTIRTGAMARLECAAE-GHPAPQISWQK---DG--GTD 642

Query: 229 --------VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
                   + V  E  V    N+   D G Y+C+A+N+AG    NA + VL  P+  I P
Sbjct: 643 FPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTVLETPSF-IRP 701

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA 340
            E  +V  GE   L+C A G P P ++W K   P           +  +  I      DA
Sbjct: 702 LEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDA 761

Query: 341 GQYKCIGKNSAGTEEKVITVAVEHRP 366
           G+Y CI  N+ GTE   I + V   P
Sbjct: 762 GKYTCIMSNTLGTERGHIYLNVISSP 787

Homo sapiens (taxid: 9606)

>sp|Q3V1M1|IGS10_MOUSE Immunoglobulin superfamily member 10 OS=Mus musculus GN=Igsf10 PE=2 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 49/314 (15%)

Query: 90   QANEVQVTPRQQSAPE-------GSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE- 140
            +  E +  PR ++A +       G ++ + C +  DP  TI W      +LP  ++  + 
Sbjct: 1904 RVEEQETVPRIETASQKWTEVNLGEKLLLNCSATGDPKPTIIW------KLPSKVVIDQW 1957

Query: 141  -------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP-RIRIH 186
                         +L+I  +T+ D G Y+C  +N  G+   D   + V  R  P +I   
Sbjct: 1958 HRMGSRIHVYPNGSLVIGSVTEKDGGDYLCVARNKMGD---DLVLMHVRLRLTPAKIEHK 2014

Query: 187  PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----------NDGKFGPDVEVYQELG 236
             +  +  + G    + C   +G P P  +W  PD          +D  +          G
Sbjct: 2015 QHFKKQVLHGKDFQVDCK-ASGSPVPEVSWSLPDGTVVNNVAQADDSGYRTKRYTLFHNG 2073

Query: 237  VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLE 295
             L FN +   +EG Y C A+N+ GK+ M  ++ VLT +P +       V ++ G+   L+
Sbjct: 2074 TLYFNKVGMAEEGDYICSAQNTLGKDEMKVHLTVLTAIPRIRQNYRSNVRIKAGDTAVLD 2133

Query: 296  CEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
            CE TG P P V W+     +  F    +R    +    +I  V+  D+G+Y C+ +N +G
Sbjct: 2134 CEVTGEPKPNVFWLLPSNNVISFSN--DRFIFHANGTLSINKVKPLDSGKYVCVAQNPSG 2191

Query: 353  TEEKVITVAVEHRP 366
             + K   + +  RP
Sbjct: 2192 DDTKTYKLDIVSRP 2205

May be involved in the maintenance of osteochondroprogenitor cells pool.

Mus musculus (taxid: 10090)

>sp|Q6WRI0|IGS10_HUMAN Immunoglobulin superfamily member 10 OS=Homo sapiens GN=IGSF10 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 124/285 (43%), Gaps = 31/285 (10%)

Query: 104  PEGSQVTIECKS-NDPSATIKWSK------------DNQEQLPPNMIAGETLIINGITKA 150
            P  S   + C++  +P  TI W++            +++ Q+ PN     TL I  +   
Sbjct: 1661 PANSDAFLPCEAVGNPLPTIHWTRVPSGLDLSKRKQNSRVQVLPN----GTLSIQRVEIQ 1716

Query: 151  DEGVYICSIQNAQGNVFQDYASIQVDKREMP-RIRIHPNASQTFIVGDRADIQCVLEAGE 209
            D G Y+CS  N  G    D+  + +     P RI        T   G   +++C  E G 
Sbjct: 1717 DRGQYLCSASNLFGT---DHLHVTLSVVSYPPRILERRTKEITVHSGSTVELKCRAE-GR 1772

Query: 210  PSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
            PSPT TWI  +    ++   G    V    G L  +N++  D G Y C+A N  G++ + 
Sbjct: 1773 PSPTVTWILANQTVVSESSQGSRQAVVTVDGTLVLHNLSIYDRGFYKCVASNPGGQDSLL 1832

Query: 266  AYIHVLTLPAVTITPSEYVSVRP-GEPLTLECEATGRPMPTVSWV----KYIAPFDRNLE 320
              I V+  P V +     V V   GE L L C A G P P+V WV      + P      
Sbjct: 1833 VKIQVIAAPPVILEQRRQVIVGTWGESLKLPCTAKGTPQPSVYWVLSDGTEVKPLQFTNS 1892

Query: 321  RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
            +  L S     I ++  SD G Y+CI  +S G+E +V+ + +E R
Sbjct: 1893 KLFLFSNGTLYIRNLASSDRGTYECIATSSTGSERRVVMLTMEER 1937

May be involved in the maintenance of osteochondroprogenitor cells pool.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
307169661	3395	Basement membrane-specific heparan sulfa	0.777	0.107	0.304	5e-42
307203130	3454	Basement membrane-specific heparan sulfa	0.777	0.105	0.305	2e-41
345478852	3048	PREDICTED: basement membrane-specific he	0.772	0.119	0.288	1e-40
383854046	4459	PREDICTED: LOW QUALITY PROTEIN: basement	0.779	0.082	0.311	7e-39
380020742	2724	PREDICTED: basement membrane-specific he	0.575	0.099	0.385	1e-38
328783869	4479	PREDICTED: basement membrane-specific he	0.575	0.060	0.385	1e-37
332025352	3377	Basement membrane-specific heparan sulfa	0.630	0.087	0.343	5e-37
242005391	4375	predicted protein [Pediculus humanus cor	0.630	0.067	0.336	9e-35
270008326	3943	hypothetical protein TcasGA2_TC030735 [T	0.588	0.070	0.329	6e-32
189237255	4254	PREDICTED: similar to AGAP003656-PA [Tri	0.579	0.064	0.334	1e-31

>gi|307169661|gb|EFN62243.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Camponotus floridanus]

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 199/457 (43%), Gaps = 91/457 (19%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            ++V P +Q   +G+   + C  S +P   +KWSK  +         G+TL I     +D 
Sbjct: 1776 IKVRPDRQEVSQGTVAEVRCITSGEPGVQVKWSKYTETMSSRVQQVGDTLRIINAQVSDR 1835

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
            GVYIC + ++ G+ ++  A I+V+ RE P + ++P   QT I+G  AD+QC  +AG P P
Sbjct: 1836 GVYICRVTSSTGS-YEASAIIEVEPREAPLLELYPQDIQTVILGGSADLQCRAKAGFPVP 1894

Query: 213  TQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
               W R   DG+ F  ++E     G+LR +NI   D+G Y C A N  G   + A+I V 
Sbjct: 1895 ELHWSR--QDGRPFASNIEQLPG-GLLRLSNITVNDDGAYICSASNEVGSTSVIAHIEVQ 1951

Query: 272  TLPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSR 327
            +LP +TITP    + V+ G  + L C A+G P P V+W KY   +   D   +       
Sbjct: 1952 SLPVITITPKHGILQVKRGSRIRLICSASGYPQPNVAWSKYVHGVTIHDTYSKAAATPLS 2011

Query: 328  AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS-------------PR 374
            AVY + SV   D G Y C   N+ G  E+ I + +E   EY P +             P+
Sbjct: 2012 AVYELNSVSPDDEGSYTCQATNAVGIAEERIQIRIEEDDEYIPCTGDRGDIPCDDRQQPQ 2071

Query: 375  PG------------ADIL----------------PDGDEYY--------RPEPE------ 392
            P              D L                PDGD  Y        RP PE      
Sbjct: 2072 PDNRDPNQQGVLIPKDYLRIPNGGKVEMRCQVFGPDGDHIYLDWKRSDHRPLPEGSTVHN 2131

Query: 393  ------------EGEYV-----------YAVGSNASISCSVEPPRITLRPVRQTVKPGDI 429
                         GEY+           +   S+  I   + PPRI L P RQTV PG+ 
Sbjct: 2132 GVLSIPTVDRNAAGEYICLGLDPASTVLFRAKSHLEI---ISPPRIELNPTRQTVGPGEN 2188

Query: 430  ANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRL 466
             +I C+A G  P+ I W+ +    P  V    G L+ 
Sbjct: 2189 PSIICTATGDEPLHIEWEAIGRPLPYSVSHSRGVLQF 2225

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203130|gb|EFN82310.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Harpegnathos saltator]

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 191/436 (43%), Gaps = 70/436 (16%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            ++V P +Q   +G+   + C  S +    +KWSK  +   P      +TL I     +D 
Sbjct: 1924 IKVKPERQVVSQGTVAEVRCITSGESGVHVKWSKYTETMSPRVQQVDDTLRIVNAQVSDR 1983

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
            GVYIC + +A G+ ++  A I+V  RE P + ++P   QT I+G  AD+QC  +AG P P
Sbjct: 1984 GVYICRVSSAAGS-YEASAIIEVAPREAPVLELYPQDVQTVILGGSADLQCRAKAGFPVP 2042

Query: 213  TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
               W R D+   F  ++E     G+LR +NI   D G Y C A N  G   + A+I V +
Sbjct: 2043 ELHWSRQDSR-PFASNIEQLPG-GLLRLSNITANDGGAYICAASNEVGSTSVIAHIEVQS 2100

Query: 273  LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYI---APFDRNLERDELTSRA 328
            +P +TITP    + V+ G  + L C A+G P P V+W K++     +D           A
Sbjct: 2101 MPVITITPRHGILQVKRGGRVRLMCSASGHPQPNVAWSKHVNGMTVYDTYSRTAATPLSA 2160

Query: 329  VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR---------------------PE 367
            VY I SV   D G Y C   N+ G  E+ I + +E                       P 
Sbjct: 2161 VYEIFSVSPDDEGSYTCQATNAVGIAEERIQIRIEDDNDVDNQPCTGDRGDIPYYLRIPN 2220

Query: 368  YGPISPRPGADILPDGDEYY--------RPEPE------------------EGEYV---- 397
             G +  R      PDGD  Y        R  PE                   GEY+    
Sbjct: 2221 GGKVEMRCQV-FGPDGDHIYLDWKRSDHRSLPEGSTVHNGVLSIPTVDRTAAGEYICLGL 2279

Query: 398  -------YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQ 450
                   +   S+  I   + PPRI L P RQTV PG+  +I C+A G  P+ I W+ + 
Sbjct: 2280 DPAGAVLFRAKSHLEI---ISPPRIELNPTRQTVGPGENPSIVCTATGDEPLRIEWEAIG 2336

Query: 451  GYFPSHVVEYNGELRL 466
               P  V  +NG L+ 
Sbjct: 2337 RPLPYSVTHHNGVLQF 2352

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345478852|ref|XP_001599724.2| PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Nasonia vitripennis]

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 201/457 (43%), Gaps = 93/457 (20%)

Query: 94   VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM-IAGETLIINGITKADE 152
            V + P++Q  P+GS  TI C+++   + I+W K+ +  L  N+   G  L I  I  ++ 
Sbjct: 2109 VLIDPQRQKVPQGSTATIHCRADGDESNIRWVKNRESTLGSNVQTIGNILRITNIQVSNR 2168

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
            G+Y C I   +   ++  A I+V+ REMP +++HP  SQT + G  AD  C   AG PSP
Sbjct: 2169 GIYTCRISPNEQESYEASAIIEVEPREMPVLQLHPMESQTVLEGGTADFHCRAIAGIPSP 2228

Query: 213  TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
               W R DN     PD ++Y   G+LR NN+ + D G Y C+AENS G       + V +
Sbjct: 2229 EIKWSRQDNR-PLSPDSQIYPG-GMLRINNVTSSDAGSYVCVAENSVGVTSATTSLKVHS 2286

Query: 273  LPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVK------YIAPFDRNLERDELT 325
             P++ I+P S  +++R GE L L C A G P P VSW K       I P+    +  +  
Sbjct: 2287 FPSIRISPQSGVLNLRSGEKLHLICSAIGYPQPVVSWSKDHNEEPVIDPY----KSSKFG 2342

Query: 326  SRAVYTIASVRESDAGQYK------------------------------CIGKNSAG--- 352
              A   I SV   D G Y                               C G  + G   
Sbjct: 2343 PSATIDINSVSREDEGTYVCRASNSAGIVDDYVQIRIEDDINSVESSEICRGDTACGYVP 2402

Query: 353  TEEK------VITVAVEHRPEYGPISPR------------------------PGADILPD 382
            TEEK      ++   + + P  G +S R                        P    + D
Sbjct: 2403 TEEKPSKHSGLLVDRLSNIPSGGKVSMRCQLFPYPEDKNIYLDWKREDGRLMPQESTVSD 2462

Query: 383  GDEYYRPEPEE--GEY-----------VYAVGSNASISCSVEPPRITLRPVRQTVKPGDI 429
            G  Y     +E  GEY           V++  +   +   V+ P++ LRP++QTV+PG+ 
Sbjct: 2463 GILYINDLKKEDSGEYTCFGVDAYGKQVFSAKTQLHV---VDFPKVELRPIKQTVRPGEN 2519

Query: 430  ANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRL 466
              I C A G  P+++ W+ +    P+ V + +G L+ 
Sbjct: 2520 PAIHCIATGEQPLNVEWEAVGRPLPTSVSQSHGVLQF 2556

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854046|ref|XP_003702533.1| PREDICTED: LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein-like [Megachile rotundata]

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 197/443 (44%), Gaps = 76/443 (17%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKAD 151
            ++V P +Q+ P+GS   + C  S +P + +KWSK + E+L  N+   G+ L I  I  +D
Sbjct: 3429 IKVKPEKQTVPQGSVAEVRCVSSGEPGSQVKWSKYHHERLNTNIQQVGDILRIVNIQISD 3488

Query: 152  EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
             GVY+C I    G   +  A I+V+ RE+PR+ I+P       +G   D+QC   AG P 
Sbjct: 3489 RGVYVCRITGPSG-TQEASAIIEVEPREVPRVEIYPKEVPPVTLGGSTDLQCRAVAGIPM 3547

Query: 212  PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
            P   W    N   F P+++     GVLR +NI   D G Y C A NS G      YI V 
Sbjct: 3548 PELHWSH-QNGRPFPPNIKQLPG-GVLRLSNITANDGGAYVCSAVNSVGSNTAVVYIEVQ 3605

Query: 272  TLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---R 327
            ++P + I+P S  + V+ G+ + L C ATG P PTV+W K+    +  + + ++      
Sbjct: 3606 SVPIIMISPRSGILQVKRGDRVRLVCSATGYPQPTVAWSKHQNQVNLXVLQAKIVGTPLS 3665

Query: 328  AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE---HRPEYG--PISPRPGADI-LP 381
            AVY I S    + G Y C   N+AG  E+ + + VE   + P  G  P    P   I +P
Sbjct: 3666 AVYEILSASPDNEGSYTCHANNAAGIVEERVHIRVEDDSYPPCRGDVPCPENPNDKISIP 3725

Query: 382  ---------------------DGDEYY--------RPEPE------------------EG 394
                                 DGD  Y        RP PE                   G
Sbjct: 3726 IDYFRIPNGGKVEMRCYVHSSDGDHIYLDWKRTDHRPLPEGSTVHNGILNIPSVDRSAAG 3785

Query: 395  EYV-----------YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPIS 443
            EYV           +   S+  +   + PPRI L P RQTV+ G+  +I CS  G  P+S
Sbjct: 3786 EYVCLGMDQAGNVLFRAKSHLDV---LSPPRIVLNPPRQTVRSGENPSIVCSTTGDEPMS 3842

Query: 444  IRWQPLQGYFPSHVVEYNGELRL 466
            I W  +    P  V    G L+ 
Sbjct: 3843 IEWAAIGHNLPPTVTRDRGILQF 3865

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020742|ref|XP_003694238.1| PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Apis florea]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 154/283 (54%), Gaps = 12/283 (4%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIA-GETLIINGITKAD 151
            V+VTP +Q+ P+GS   I+C  + +P   +KWSK   EQ+ PN+   G+TL I  I  AD
Sbjct: 1623 VKVTPEKQTVPQGSIAEIKCFTTGEPGIQVKWSK-YLEQMSPNVQQIGDTLRIANIQIAD 1681

Query: 152  EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
             GVY+C +  + G+  +  A I+V+ RE P + I+P       +G   D+QC   AG P 
Sbjct: 1682 RGVYVCRVTGSSGS-HEASAIIEVEPREPPLVEIYPKNVPPVTLGGSTDLQCRAIAGIPI 1740

Query: 212  PTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            P   W     DG+ F P+++     GVLR +NI T D G Y C A NS G      YI V
Sbjct: 1741 PVLQW--SHEDGRPFAPNIKQLPG-GVLRLSNITTNDGGSYVCSAVNSVGSNSATVYIEV 1797

Query: 271  LTLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
             ++P + ITP S  ++V+PG+ + L C ATG P PTV+W K+  + P   N E  +   +
Sbjct: 1798 QSVPVILITPKSGILTVKPGDRIRLVCSATGYPQPTVAWSKHMNVVPLTTN-EVIDTPQK 1856

Query: 328  AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
            AVY I S   +D G Y C   N+AG  E+ + + VE    Y P
Sbjct: 1857 AVYEIYSASPNDEGSYTCHANNAAGIVEERVYIRVEDSEVYPP 1899

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783869|ref|XP_393220.4| PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Apis mellifera]

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 12/283 (4%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIA-GETLIINGITKAD 151
            V+VTP +Q+ P+GS   ++C  + +P   +KWSK   EQ+ PN+   G+TL I  I  AD
Sbjct: 3452 VKVTPEKQTVPQGSIAEVKCFTTGEPGVQVKWSK-YLEQMSPNVQQIGDTLRIVNIQIAD 3510

Query: 152  EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
             GVY+C +  + G+  +  A I+V+ RE P + I+P      I+G   D+QC   AG P 
Sbjct: 3511 RGVYVCRVTGSSGS-HEASAIIEVEPREPPLVEIYPKNVPPVILGGSTDLQCRAIAGIPI 3569

Query: 212  PTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            P   W     DG+ F  +++ +   GVLR +NI T D G Y C A NS G      YI V
Sbjct: 3570 PVLQWSH--EDGRPFASNIK-HLPGGVLRLSNITTNDGGSYVCSAVNSVGSNSATVYIEV 3626

Query: 271  LTLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
             ++P + ITP S  ++V+PG+ + L C ATG P PTV+W K+  I P   N E  +   +
Sbjct: 3627 QSVPIILITPKSGILTVKPGDRVRLVCSATGYPQPTVAWSKHMNIVPLTTN-EVIDTPQK 3685

Query: 328  AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
            AVY I S   +D G Y C   N+AG  E+ + + VE    Y P
Sbjct: 3686 AVYEIYSASPNDEGSYTCHANNAAGIVEERVYIRVEDSEVYPP 3728

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025352|gb|EGI65519.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Acromyrmex echinatior]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 152/306 (49%), Gaps = 9/306 (2%)

Query: 94   VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            V V P +Q   +G+   + C  S +P   +KWSK  +         G+TL I  +  +D 
Sbjct: 1881 VTVRPFRQEVKQGTVAEVRCITSGEPGLQVKWSKYTETMSSRVQQVGDTLRIINVQVSDR 1940

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
            GVY+C +    GN ++  A I+V+ RE P + ++P   QT I+G  AD+QC  +AG P+P
Sbjct: 1941 GVYLCRVAGPTGN-YEASAIIEVEPREAPVLELYPQDIQTVILGGSADLQCRAKAGFPAP 1999

Query: 213  TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
               W R DN   F  ++E     G+LR +NI   D G Y C A N  G   + A+I V +
Sbjct: 2000 ELRWSRVDNR-PFASNIEQLPS-GLLRLSNITANDGGAYICSASNEVGSTSVIAHIEVQS 2057

Query: 273  LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFDRNLERDELTS-RA 328
            +P +TITP    + V+ G  + L C A+G P P V+W KY+          R   T   A
Sbjct: 2058 MPVITITPQHGILQVKRGSRVRLMCSASGHPQPNVAWSKYVNGITIQDTYSRTAATPLSA 2117

Query: 329  VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
            VY I SV   D G Y C   N+ G  E+ + + +E   +Y P +   G DI  D D    
Sbjct: 2118 VYEIFSVSPDDEGSYTCTATNAVGIAEERVQIRIEDDDDYVPCTGDRG-DIPCDDDRQRP 2176

Query: 389  PEPEEG 394
            P+  +G
Sbjct: 2177 PDSVKG 2182

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005391|ref|XP_002423552.1| predicted protein [Pediculus humanus corporis] gi|212506681|gb|EEB10814.1| predicted protein [Pediculus humanus corporis]

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 156/312 (50%), Gaps = 15/312 (4%)

Query: 94   VQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            VQ+ P + +  +G+   + C +  +P   ++W++  Q+        G  L I      D 
Sbjct: 2773 VQIDPERLTVAQGTTAELHCNARGEPQPKVRWTRVGQDLGDNARDYGGLLRIENAMMKDR 2832

Query: 153  GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
            G Y+C   +  G+  Q  A + +++RE P + ++P ASQT   G    +QC +  G+P+P
Sbjct: 2833 GTYLCIADSPTGSA-QASAFVDIERREPPAVELYPAASQTVHEGGSLILQCRVTQGDPTP 2891

Query: 213  TQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
               W + D     G ++E   EL  GVLRF+++   D G++ C AENSAG     A I V
Sbjct: 2892 QIRWSKSDGR-SLGSNIE---ELPNGVLRFSDMKLEDAGQFICRAENSAGSVDAIASIEV 2947

Query: 271  LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI---APFDRNLERDELTSR 327
             + P +TITPS  VSV  G+ + LEC ATG P P+VSW K      PF  ++   +  + 
Sbjct: 2948 QSKPVITITPSNDVSVVEGQRVKLECRATGSPTPSVSWSKTSYREHPFSVSITEGQPMA- 3006

Query: 328  AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS---PRPGADILPDGD 384
            AV+ I  V ++D G Y CI  NSAGT E+ + + VE     GP        G D      
Sbjct: 3007 AVHEITRVSKADEGSYSCIAINSAGTTEERLMLRVELDNNIGPTRGDIASGGGDAYGQSR 3066

Query: 385  EYYRPEPEEGEY 396
              Y+PE   G Y
Sbjct: 3067 HPYQPEDRRGSY 3078

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008326|gb|EFA04774.1| hypothetical protein TcasGA2_TC030735 [Tribolium castaneum]

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 14/291 (4%)

Query: 90   QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-AGETLIINGI 147
            +++  +V+P + +  +GS   + C  +  P+ TIKW++   E LPP++  +G  L I   
Sbjct: 2443 ESSGAKVSPERITISQGSSTELRCDATGSPTPTIKWTRVGSE-LPPHITQSGSVLYIRNA 2501

Query: 148  TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
              +D GVY+C   N  G + Q  + ++V++ E+P + +HP ASQT   G+ A + C ++A
Sbjct: 2502 QVSDRGVYVCVSSNNLG-LAQASSIVEVNRLEIPILSVHPQASQTVTAGNSAILACRVDA 2560

Query: 208  GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
            G P+PT  W R D      P++E     G LRF  I   + G+Y C AEN AG+  + A 
Sbjct: 2561 GIPAPTVVWTRADGR-PLSPNIETMSH-GTLRFTQITENEGGEYICTAENEAGRASVTAN 2618

Query: 268  IHVLTLPAVTITPSEYVSV-RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL-- 324
            I V   P V   P E V + R  E + LEC A G P P++ W +   P+  +  R  L  
Sbjct: 2619 IEVQVAPEVWTVPDEDVIMRRRDEFVRLECHARGSPPPSLQWRRLSEPYGAS-GRSGLPA 2677

Query: 325  ----TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
                 + A+  IA     D   Y C  +N AG  EK + +A+   P  G I
Sbjct: 2678 VAAPRNVAILEIARFSARDQDLYICEARNQAGVAEKRVQLAIHSVPSRGDI 2728

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237255|ref|XP_972068.2| PREDICTED: similar to AGAP003656-PA [Tribolium castaneum]

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 14/287 (4%)

Query: 94   VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKAD 151
             +V+P + +  +GS   + C  +  P+ TIKW++   E LPP++  +G  L I     +D
Sbjct: 2762 AKVSPERITISQGSSTELRCDATGSPTPTIKWTRVGSE-LPPHITQSGSVLYIRNAQVSD 2820

Query: 152  EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
             GVY+C   N  G + Q  + ++V++ E+P + +HP ASQT   G+ A + C ++AG P+
Sbjct: 2821 RGVYVCVSSNNLG-LAQASSIVEVNRLEIPILSVHPQASQTVTAGNSAILACRVDAGIPA 2879

Query: 212  PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
            PT  W R D      P++E     G LRF  I   + G+Y C AEN AG+  + A I V 
Sbjct: 2880 PTVVWTRADGR-PLSPNIETMSH-GTLRFTQITENEGGEYICTAENEAGRASVTANIEVQ 2937

Query: 272  TLPAVTITPSEYVSV-RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL------ 324
              P V   P E V + R  E + LEC A G P P++ W +   P+  +  R  L      
Sbjct: 2938 VAPEVWTVPDEDVIMRRRDEFVRLECHARGSPPPSLQWRRLSEPYGAS-GRSGLPAVAAP 2996

Query: 325  TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
             + A+  IA     D   Y C  +N AG  EK + +A+   P  G I
Sbjct: 2997 RNVAILEIARFSARDQDLYICEARNQAGVAEKRVQLAIHSVPSRGDI 3043

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
FB|FBgn0261451	4629	trol "terribly reduced optic l	0.539	0.054	0.340	7.8e-30
UNIPROTKB|Q9NR99	2828	MXRA5 "Matrix-remodeling-assoc	0.579	0.096	0.300	7.6e-29
ZFIN|ZDB-GENE-080807-4	3422	hspg2 "heparan sulfate proteog	0.602	0.082	0.307	8.7e-28
ZFIN|ZDB-GENE-030131-9765	2925	hmcn2 "hemicentin 2" [Danio re	0.564	0.090	0.296	4.6e-27
UNIPROTKB|F1NAT6	1213	HSPG2 "Uncharacterized protein	0.569	0.220	0.303	3.4e-26
UNIPROTKB|F1MER7	4374	HSPG2 "Uncharacterized protein	0.526	0.056	0.299	8.3e-24
UNIPROTKB|F1SU03	1848	HSPG2 "Uncharacterized protein	0.545	0.139	0.309	2.5e-25
UNIPROTKB|E1BE11	5588	HMCN1 "Uncharacterized protein	0.547	0.046	0.298	5.1e-25
UNIPROTKB|F1NN41	1416	PXDN "Uncharacterized protein"	0.556	0.185	0.285	1.4e-24
MGI|MGI:1916925	1475	Pxdn "peroxidasin homolog (Dro	0.556	0.177	0.292	2.2e-24

FB|FBgn0261451 trol "terribly reduced optic lobes" [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
 Identities = 90/264 (34%), Positives = 133/264 (50%)

Query:   105 EGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-IAGETLIINGITKADEGVYICSIQNA 162
             +G   +I C+ S  P  +IKW+K + + +P N+ I+G  L I G    + GVY C  +N 
Sbjct:  3168 QGEDYSITCEASGSPYPSIKWAKVH-DFMPENVHISGNVLTIYGARFENRGVYSCVAEND 3226

Query:   163 QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND 222
              G+      SI ++ RE P ++I     QTF VG  A + C +E G P PT  W+R D  
Sbjct:  3227 HGSDLSS-TSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVE-GIPDPTVEWVRVDGQ 3284

Query:   223 GKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
                 P  ++ Q  G +  ++I   D G Y C A+N  G+    A I V     V I P  
Sbjct:  3285 -PLSPRHKI-QSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITVQEPTLVQIIPDN 3342

Query:   283 Y-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
               + +  G+ L+L C  +G P P V WV  +A   R+L     ++ A+  I  V ++DAG
Sbjct:  3343 RDLRLTEGDELSLTCVGSGVPNPEVEWVNEMA-LKRDLYSPP-SNTAILKIYRVTKADAG 3400

Query:   342 QYKCIGKNSAGTEEKVITVAVEHR 365
              Y C GKN AG++E  + V V+ R
Sbjct:  3401 IYTCHGKNEAGSDEAHVRVEVQER 3424

GO:0005578 "proteinaceous extracellular matrix" evidence=NAS

GO:0005604 "basement membrane" evidence=ISS

GO:0055059 "asymmetric neuroblast division" evidence=NAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0072347 "response to anesthetic" evidence=IMP

UNIPROTKB|Q9NR99 MXRA5 "Matrix-remodeling-associated protein 5" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 7.6e-29, Sum P(4) = 7.6e-29
 Identities = 91/303 (30%), Positives = 139/303 (45%)

Query:    97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP--------NMIAGETLIINGI 147
             +PR+     G  + ++C  S DP   I W   ++  +           + A  TL++  +
Sbjct:  2152 SPRRTDVRYGGTLKLDCSASGDPWPRILWRLPSKRMIDALFSFDSRIKVFANGTLVVKSV 2211

Query:   148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP--NASQTFIVGDRADIQCVL 205
             T  D G Y+C  +N  G+   DY  ++VD    P    H   N  + F  GD   + CV 
Sbjct:  2212 TDKDAGDYLCVARNKVGD---DYVVLKVDVVMKPAKIEHKEENDHKVFYGGD-LKVDCVA 2267

Query:   206 EAGEPSPTQTWIRPDND--GKF------GPDVEVYQEL--GVLRFNNIATGDEGKYTCIA 255
               G P+P  +W  PD      F      G   + Y     G L FN +   +EG YTC A
Sbjct:  2268 -TGLPNPEISWSLPDGSLVNSFMQSDDSGGRTKRYVVFNNGTLYFNEVGMREEGDYTCFA 2326

Query:   256 ENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR-P-GEPLTLECEATGRPMPTVSWVKYIA 313
             EN  GK+ M   + V+T PA TI    Y++V+ P G+ +T+ CEA G PMP V+W+    
Sbjct:  2327 ENQVGKDEMRVRVKVVTAPA-TIRNKTYLAVQVPYGDVVTVACEAKGEPMPKVTWLSPTN 2385

Query:   314 P-FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
                  + E+ ++       I   + SD+G Y C+ +NSAG + K + + V  +P     +
Sbjct:  2386 KVIPTSSEKYQIYQDGTLLIQKAQRSDSGNYTCLVRNSAGEDRKTVWIHVNVQPPKINGN 2445

Query:   373 PRP 375
             P P
Sbjct:  2446 PNP 2448

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-080807-4 hspg2 "heparan sulfate proteoglycan 2" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
 Identities = 97/315 (30%), Positives = 142/315 (45%)

Query:    82 ICLAYLSPQANEVQVT-PRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN-MI 137
             I +A L  +  EV +  P+ QS   GS V+  C  KS  P+ T+ W++    +LP   M 
Sbjct:  1680 IVVATLPSKPIEVFIEEPKAQSVRVGSTVSFICTAKSKLPAYTLVWTRKGNGKLPNRAMD 1739

Query:   138 AGETLIINGITKADEGVYICSIQNA----QGNVFQDYASIQVDKREMPRIRIHPNASQTF 193
                 L I  +   D G+Y+C+  N     +G+       +Q+ K   P   + P   QT 
Sbjct:  1740 FNGILTIQNVQPEDAGIYVCTGSNMLGMDEGSAVLYVPGLQILK--YPVATLSPPV-QTV 1796

Query:   194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
               GD A  +C +  G P+P   WI     GK      V +  G L  +++   DEG+Y C
Sbjct:  1797 KEGDVAQFRCTV-TGNPTPAVEWI--GGSGKRISSKAVIRN-GQLTISSVDRSDEGEYIC 1852

Query:   254 IAENSAGKEVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
              A N+ G+      +HV +      LP V ++P   V +  GE L L C A G P P++ 
Sbjct:  1853 KALNTHGEHTARGVLHVQSTGQPNGLPHVQVSPQR-VEIYEGETLRLYCRAIGSPTPSLK 1911

Query:   308 WVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
             W K  A  DR       T      + ++R SDAG Y C+G N+AG+ E  I V+V     
Sbjct:  1912 WNKRAARMDR-------TDIGTLVVPNIRLSDAGTYLCVGTNAAGSSEAHIDVSVTKGEN 1964

Query:   368 Y--GPISPRPGADIL 380
                G I   P A ++
Sbjct:  1965 ILSGVIIQPPSASVI 1979

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-9765 hmcn2 "hemicentin 2" [Danio rerio (taxid:7955)]

 Score = 311 (114.5 bits), Expect = 4.6e-27, Sum P(2) = 4.6e-27
 Identities = 87/293 (29%), Positives = 140/293 (47%)

Query:    98 PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNM----IA--GETLIINGITKA 150
             P + SAP G ++ +EC++   P+  + W ++ +  +  N     I+  G TL    +   
Sbjct:   927 PSEVSAPVGEELALECRAMGSPAPKVSWLRNGKTLVNGNTEHINISPDGSTLTFLSVKPE 986

Query:   151 DEGVYICSIQNAQGN---VFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCV 204
             D G Y C   ++ G    ++  +A +      +  +PR  +H   +Q  +V     ++C 
Sbjct:   987 DSGTYTCLAVSSAGQETKIYTLFALVPPSISGETSVPR-EVH--TTQHSVV----TLECK 1039

Query:   205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
              + G P P  +W+R  +     P + +      LR + +   D G YTC+A + AG   +
Sbjct:  1040 AK-GTPQPQISWLRDGHPLLLSPRIRLLSADSTLRISPVHLSDSGIYTCVARSRAGLAEL 1098

Query:   265 NAYIHVLTLPAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD--RNLER 321
             N  + V   PAV  T P+E V+V  G  +TL CEA G P PT+SW+K   P    RNL  
Sbjct:  1099 NFDLQVQAPPAVERTEPTEQVAVVQGSSVTLTCEARGVPPPTLSWLKDGQPLSLHRNLLL 1158

Query:   322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY-GPISP 373
             D   +R  + ++ V  SDAG Y C+  N AG+  K   + V   P+  G +SP
Sbjct:  1159 DGQETR--FLLSDVGPSDAGLYSCVASNQAGSSTKTFNLTVLEPPKITGSLSP 1209

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IGI

GO:0090497 "mesenchymal cell migration" evidence=IGI

GO:0035122 "embryonic medial fin morphogenesis" evidence=IGI

GO:0030198 "extracellular matrix organization" evidence=IGI

UNIPROTKB|F1NAT6 HSPG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 312 (114.9 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
 Identities = 86/283 (30%), Positives = 123/283 (43%)

Query:    94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
             V+VTP       GS     C ++DP   ++W KD  E  P + +    L I  + +  +G
Sbjct:   429 VRVTPGSLVRGVGSTAEFACTASDPRVHLEWLKDGGELPPRHSVQDGVLRIAELAQGAQG 488

Query:   154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIH-PNASQTFIVGDRADIQCVLEAGEPSP 212
             VY+C      G V +D A++ V  + +PR  I+   A QT + G   +++C L  GEP P
Sbjct:   489 VYVCRASTLHGQV-EDRATLTV--QALPRALINIRTAVQTVLAGMEVELEC-LGLGEPQP 544

Query:   213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
               TW +    G+  P V V    G L    +   D G+Y C A NS G    +  +HV  
Sbjct:   545 HVTWSKVG--GRIRPGVLV--RAGTLTIERVERADAGQYRCTATNSVGTVQSHVILHVQA 600

Query:   273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
              P +   P E   V  G    L C A+G P+P +SW K     +  L            +
Sbjct:   601 APHIAGQP-EVKEVSVGSAAVLPCLASGFPVPEISWSK----LEGELPEGTRVEGTALML 655

Query:   333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR-PEYGPISPR 374
              +VR  DAG Y C   N  G E     + V+ R   Y   +PR
Sbjct:   656 PAVRLEDAGVYACAASNRRGQETAFYVLKVQERLVPYFTQTPR 698

GO:0001958 "endochondral ossification" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

UNIPROTKB|F1MER7 HSPG2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
 Identities = 79/264 (29%), Positives = 121/264 (45%)

Query:    91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
             A  VQVTP+ ++   G+ V   C   +DP   ++W K+     P + +    L I  + +
Sbjct:  3381 APTVQVTPQLETKSIGASVEFHCVVPSDPGTQLRWVKEGGPLPPGHSVHDGVLRIQNLDQ 3440

Query:   150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS-QTFIVGDRADIQCVLEAG 208
               +G Y+C  Q   G   Q  AS Q+  + +P + I+   S Q+ +VG   + +C L  G
Sbjct:  3441 NCQGTYVCQAQGPWG---QAQASAQLVVQALPSVLINIRTSVQSVVVGHAVEFEC-LALG 3496

Query:   209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
             +P P  TW +    G+  P +   Q  G++R   +   D G+Y C A N+AG    +  +
Sbjct:  3497 DPKPQVTWSKVG--GRLRPGI--VQSGGIVRIARVELADAGQYRCTATNAAGTTQSHVLL 3552

Query:   269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA 328
              V  LP ++ TP E V V  G      C  +G P P ++W K     D NL  D      
Sbjct:  3553 LVQALPQIS-TPPE-VRVPAGSTAVFPCMVSGYPAPEITWSK----LDGNLPPDSRLENH 3606

Query:   329 VYTIASVRESDAGQYKCIGKNSAG 352
             +  + SV+  DAG Y C   N  G
Sbjct:  3607 MLLLPSVQPQDAGTYVCTATNRQG 3630

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

UNIPROTKB|F1SU03 HSPG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 310 (114.2 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 85/275 (30%), Positives = 127/275 (46%)

Query:    94 VQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPP-NMIAGETLIINGITKAD 151
             VQVTP+ ++   G+ V   C   +D    ++W K+   QLPP + +    L I  + ++ 
Sbjct:  1538 VQVTPQLETKSIGASVEFHCIVPSDQGTQLRWVKEGG-QLPPGHSVHDGVLRIQNLDQSC 1596

Query:   152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS-QTFIVGDRADIQCVLEAGEP 210
             +G Y+C      G   Q  AS Q+  + +P + I+   S QT +VG   + +C L  G+P
Sbjct:  1597 QGTYVCQAYGPWG---QAQASAQLVVQALPSVLINIRTSVQTVVVGHSVEFEC-LALGDP 1652

Query:   211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
              P  TW +    G   P +   Q  G++R  ++   D G+Y C A N+AG    +  + V
Sbjct:  1653 KPQVTWSKVG--GPLRPGI--VQTGGIVRIAHVELADAGQYRCTATNAAGTTQSHVLLLV 1708

Query:   271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
               LP ++ TP E V V  G      C A+G P P +SW K     D NL  D      + 
Sbjct:  1709 QALPQIS-TPPE-VRVPAGSAAVFPCMASGYPTPDISWSK----LDGNLPPDSRLENNML 1762

Query:   331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
              + SVR  DAG Y C   N  G  +    + V  R
Sbjct:  1763 LLPSVRPQDAGTYVCTATNRQGKVKAFAHLQVPER 1797

GO:0031012 "extracellular matrix" evidence=IDA

UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 302 (111.4 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
 Identities = 82/275 (29%), Positives = 132/275 (48%)

Query:   100 QQSAPEGSQVTIECKSND-PSATIKWSKDNQEQLPPN------MIAGETLIINGITKADE 152
             Q +  EG  +++ C+S+  P   + W K     L  +      +  G  L I+   K+D 
Sbjct:  2155 QLTVIEGHLISLLCESSGIPPPNLIWKKKGSPVLADSAGRVRILSGGRQLQISVAEKSDA 2214

Query:   153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV--GDRADIQCVLEAGEP 210
             G+Y C   N  G   +DY S+QV  R  P I    +     IV  G    ++C +E G P
Sbjct:  2215 GLYSCMASNVAGTAKKDY-SLQVYIR--PTISNSGSHPTEIIVTRGKSVSLECEVE-GVP 2270

Query:   211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
              P  TW++       G  +E+  E  V++  N+   D G+Y C+A N AG       + V
Sbjct:  2271 QPAVTWMKDGRPLTKGRGMEIMDEGRVVQLKNVHVSDTGRYVCVAMNIAGMTDRKYDLSV 2330

Query:   271 LTLPAVT---ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR 327
              T P++     TP E +SV     ++L CEA+G P+P+++W+K   P + +     L+  
Sbjct:  2331 HTPPSIIGNHRTP-ENISVVEKSSVSLNCEASGIPLPSITWLKDGWPVNLSSSLRILSGG 2389

Query:   328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
              +  +   R  DAGQY C+ +N+AG E K+  ++V
Sbjct:  2390 RILRLMQTRTEDAGQYTCVVRNAAGEERKIFRLSV 2424

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1NN41 PXDN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 79/277 (28%), Positives = 125/277 (45%)

Query:    98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPP-----NMIAGETLIINGITKAD 151
             P+      G+ V   C++  +P   I W ++N E +       N++   TL+I    + D
Sbjct:   188 PQDVDVTSGNTVYFTCRAEGNPKPEIIWLRNNNELIMKEDSRLNLLDDGTLMIQNTQETD 247

Query:   152 EGVYICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
             +G+Y C  +N  G V     +++       P   IHP  ++  +VG+   ++C    G P
Sbjct:   248 QGIYQCMAKNVAGEVKTQEVTLRYFGSPARPSFVIHPQNTEV-LVGESVTLECSA-TGHP 305

Query:   211 SPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
              P  TW + D       P + +    G L   N+   D G+YTC A NS G     AYI 
Sbjct:   306 QPQITWTKGDRTPLPSDPRITITPS-GGLYIQNVKQEDSGEYTCFATNSIGNIHATAYII 364

Query:   270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT-SRA 328
             V  LP  T+TP +   +  G+ +   CEA G P P ++W K       +++R  L  S  
Sbjct:   365 VQALPQFTVTPQDKTVIE-GQTVDFPCEAQGYPQPVIAWTK--GGGQLSVDRRHLVLSSG 421

Query:   329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
                I+ V   D GQY+C   N  G++  V+ + V+ R
Sbjct:   422 TLRISRVALHDQGQYECQAVNIIGSQRIVVYLTVQPR 458

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

MGI|MGI:1916925 Pxdn "peroxidasin homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 81/277 (29%), Positives = 124/277 (44%)

Query:    98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPP-----NMIAGETLIINGITKAD 151
             P+      G+ V   C++  +P   I W ++N E         N++   TL+I    +AD
Sbjct:   249 PQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQEAD 308

Query:   152 EGVYICSIQNAQGNVFQDYASIQ-VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
             EGVY C  +N  G       +++ +     P   I P  ++  +VG+   ++C    G P
Sbjct:   309 EGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEV-LVGESVTLECSA-TGHP 366

Query:   211 SPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
              P  TW R D       P V +    G L   N+A  D G+YTC A NS       A+I 
Sbjct:   367 LPQITWTRGDRTPLPIDPRVNITPS-GGLYIQNVAQSDSGEYTCFASNSVDSIHATAFII 425

Query:   270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT-SRA 328
             V  LP  T+TP   V +  G+ +  +C A G P P ++W K       +++R  L  S  
Sbjct:   426 VQALPQFTVTPQSRVVIE-GQTVDFQCAAKGHPQPVIAWTK--GGSQLSVDRRHLVLSSG 482

Query:   329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
                I+ V   D GQY+C   N  G+++ V  + V+ R
Sbjct:   483 TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPR 519

GO:0004601 "peroxidase activity" evidence=ISO

GO:0005201 "extracellular matrix structural constituent" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO;IDA

GO:0031012 "extracellular matrix" evidence=ISO;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	471
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-14
smart00409	85	smart00409, IG, Immunoglobulin	2e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-11
smart00409	85	smart00409, IG, Immunoglobulin	4e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-11
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-10
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-10
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	9e-10
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	1e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-09
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	1e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-08
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-08
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-07
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-07
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	2e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-07
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-07
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	5e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-07
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	9e-07
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-06
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	3e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	4e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	5e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	3e-05
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	3e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	5e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	5e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	6e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	6e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	7e-05
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	8e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	1e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	2e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-04
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	2e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-04
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	5e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	6e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	6e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	7e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.001
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.001
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.001
PHA02785	326	PHA02785, PHA02785, IL-beta-binding protein; Provi	0.001
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.001
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	0.002
cd05871	91	cd05871, Ig_Semaphorin_classIII, Immunoglobulin (I	0.002
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.003
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	0.003
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.003
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.003
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.003
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	0.003
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.003
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.004
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.004
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.004
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA---PFDRNLERDELTSRAVYTIASVRE 337
              V+V+ GE +TL CEA+G P P V+W K                  S +  TI++V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAV 362
            D+G Y C   NS+G+     T+ V
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA---PFDRNLERDELTSRAVYTIASVRE 337
              V+V+ GE +TL CEA+G P P V+W K                  S +  TI++V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAV 362
            D+G Y C   NS+G+     T+ V
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
           P  T  P + V V+ GE     C  TG P PTVSW K    +   DR  +  +  T    
Sbjct: 1   PKFTQKPKD-VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT-- 57

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
            TI++V+  D G+Y C+  NSAG  E    + V
Sbjct: 58  LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
            G+ +TL C A G P+P ++W+K   P   +       S +  TI SV   D+G Y C+ 
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA--SGSTLTIKSVSLEDSGLYTCVA 58

Query: 348 KNSAG 352
           +NSAG
Sbjct: 59  ENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA-------GETLIINGITK 149
           P   +  EG  VT+ C+ S  P   + W K   + L  +            TL I+ +T 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 150 ADEGVYICSIQNAQGNVFQ 168
            D G Y C+  N+ G+   
Sbjct: 61  EDSGTYTCAATNSSGSASS 79

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA-------GETLIINGITK 149
           P   +  EG  VT+ C+ S  P   + W K   + L  +            TL I+ +T 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 150 ADEGVYICSIQNAQGNVFQ 168
            D G Y C+  N+ G+   
Sbjct: 61  EDSGTYTCAATNSSGSASS 79

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
           P+    P        G+ A   C +  G+P PT +W +     +     +V  E G   L
Sbjct: 1   PKFTQKPK-DVEVQEGESARFTCTVT-GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58

Query: 239 RFNNIATGDEGKYTCIAENSAGK 261
             +N+   DEGKYTC+A NSAG+
Sbjct: 59  TISNVQPDDEGKYTCVATNSAGE 81

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 105 EGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM---IAGETLIINGITKADEGVYICSIQ 160
           EG  VT+ C    +P   I W KD +  LP +     +G TL I  ++  D G+Y C  +
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGK-PLPESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 161 NAQG 164
           N+ G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
           L LEC A G P P +SW+K       +  + E  ++ +  I +V E D G+Y+C   NS 
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTL-KIDNVSEEDDGEYRCTASNSL 59

Query: 352 GTEEKVITVAVE 363
           G+    I+V VE
Sbjct: 60  GSARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSR 327
            P +   PS+ + V  G+P TL C+A GRP PT+ W+K          D    R  L S 
Sbjct: 1   PPRIVEHPSD-LIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG 59

Query: 328 AVYTIASV----RESDAGQYKCIGKNSAGT 353
           +++ +  V      SD G Y C+  NS G 
Sbjct: 60  SLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 289 GEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
           GE   LEC    G P PTVSW K   P + + ER  +       IA  R+SD G YKC+ 
Sbjct: 11  GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVA 70

Query: 348 KNSAGTEE 355
            N  G  E
Sbjct: 71  TNMVGERE 78

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 276 VTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS 334
           VT+       VRPG  ++  C A +  P  T+ W +        L    +    + TI +
Sbjct: 3   VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTR----VGGGLPSRAMDFNGILTIRN 58

Query: 335 VRESDAGQYKCIGKNSAGTEE 355
           V+ SDAG Y C G N   T+E
Sbjct: 59  VQLSDAGTYVCTGSNMLDTDE 79

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 292 LTLECEATGRPMPTVSWVK------YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
           +TL C A+G P PT++W+K                R   +  +  TI++V   D+G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 346 IGKNSAGTEEKVIT 359
           +  NSAGT    +T
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RA 328
           TLPA  +T    ++V  GE     C+  G P PTV+W++       + +R ++TS   ++
Sbjct: 1   TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS-QRHQITSTEYKS 59

Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
            + I+ V+ SD G Y  + +NS G +E   T+
Sbjct: 60  TFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VEVYQELGVLRFNNIATG 246
           S T   G+   + C    G P P  TW +             V        L  +N+   
Sbjct: 3   SVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 247 DEGKYTCIAENSAGKEVMNAYIHV 270
           D G YTC A NS+G       + V
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VEVYQELGVLRFNNIATG 246
           S T   G+   + C    G P P  TW +             V        L  +N+   
Sbjct: 3   SVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 247 DEGKYTCIAENSAGKEVMNAYIHV 270
           D G YTC A NS+G       + V
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT-SRAVYTIASVRESDAGQYKCIG 347
           G+ +TL C+A G P PT++W K   P +   E+       +  TI  V + D  +Y CI 
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 348 KNSAGTEEKVITVAV 362
           +N AG +E  I + V
Sbjct: 78  ENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 293 TLECEATGRPMPTVSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
           T+ C A+G P P ++W K   P D     R +        I +  ESD G+Y+C+  NSA
Sbjct: 2   TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 352 GT 353
           GT
Sbjct: 62  GT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
           G    + C  E G P P  TW++  +                L   +++  D G YTC+A
Sbjct: 2   GQSVTLTCPAE-GNPVPNITWLK--DGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVA 58

Query: 256 ENSAG 260
           ENSAG
Sbjct: 59  ENSAG 63

Length = 63

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P++ +   +      G+ +TLEC A G P+P + W K       + E     S AV  I 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--SMSGAVLKIP 58

Query: 334 SVRESDAGQYKCIGKNSAG 352
           +++  D G Y+C  +N  G
Sbjct: 59  NIQFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 94  VQVT---PRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN-MIAGETLIINGI 147
           +QVT   PR Q    G+ V+  C  KS  P+ T+ W++     LP   M     L I  +
Sbjct: 1   IQVTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGG-GLPSRAMDFNGILTIRNV 59

Query: 148 TKADEGVYICSIQNAQGNVFQDYASI 173
             +D G Y+C+  N   +  +  A++
Sbjct: 60  QLSDAGTYVCTGSN-MLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 109 VTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE----------TLIINGITKADEGVYIC 157
           VT+ C  S  P  TI W K+ +      +              TL I+ +T  D G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 158 SIQNAQGNV 166
              N+ G V
Sbjct: 61  VASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVYTIASVRESDA 340
           V++  G+ L L C   G P P VSW+K    +A  D    + E    A  TI  V   D+
Sbjct: 11  VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDS 70

Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G+Y  + KN  G E   +TV+V
Sbjct: 71  GKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
           L LEC A G P P V W +   P   N  +    ++ +  + +V ESD G+Y C  +NS 
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTL-QLDNVLESDDGEYVCTAENSE 59

Query: 352 GTEEKVITVAVE 363
           G+     TV VE
Sbjct: 60  GSARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLII 144
           +    P+     EG      C  + DP  T+ W KD Q  L  +    +  E    TL I
Sbjct: 2   KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQP-LRSSDRFKVTYEGGTYTLTI 60

Query: 145 NGITKADEGVYICSIQNAQG 164
           + +   DEG Y C   N+ G
Sbjct: 61  SNVQPDDEGKYTCVATNSAG 80

Length = 90

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSW---VKYIAPFDRNLE-RDELTSRA---VY 330
           IT  E  +    E +TL CEA G P+P ++W    +  +  D++L+ R  +   A     
Sbjct: 5   ITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSL 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEK 356
           T+  V+ +DAG+Y C   N  G +++
Sbjct: 65  TLKDVQLTDAGRYDCEASNRIGGDQQ 90

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           G+ +TLEC A G P+P + W K + P     E     S AV  I +++  D G Y+C  +
Sbjct: 16  GQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGAVLKIFNIQPEDEGTYECEAE 73

Query: 349 NSAGTEEKVITVAVE 363
           N  G ++    V V+
Sbjct: 74  NIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 106 GSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLIINGITKADEGVYICSIQ 160
           G  V IECK    P  TI WSK   E L  +    +    +L I  +TK+DEG Y C  +
Sbjct: 1   GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAE 59

Query: 161 NAQGN 165
           N  G 
Sbjct: 60  NFFGK 64

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 46.2 bits (109), Expect = 9e-07
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
           P +T++PS  V+   G  +TL C A G P P T+SW  Y             +S +  T+
Sbjct: 2   PVITVSPSPSVTS--GGGVTLTCSAEGGPPPPTISW--YRNGSISGGSGGLGSSGSTLTL 57

Query: 333 ASVRESDAGQYKCIGKN 349
           +SV   D+G Y C+  N
Sbjct: 58  SSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P I +        + G    ++C    G P P   W +   DG      E+     VL+ 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLEC-FALGNPVPQIKWRK--VDGSMPSSAEISMSGAVLKI 57

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            NI   DEG Y C AEN  GK+     I+V
Sbjct: 58  PNIQFEDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
           G    I+C  +A  P PT +W +          + ++ + G L   N+   DEGKYTC A
Sbjct: 1   GGDVIIECKPKAA-PKPTISWSKGTELLTNSSRICIWPD-GSLEILNVTKSDEGKYTCFA 58

Query: 256 ENSAGKEVMNAYIHV 270
           EN  GK      + V
Sbjct: 59  ENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 294 LECEATGRPMPTVSWVKYIA---PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           LEC ATG P P ++W K      P  R      +    V+ I  V+  D G Y C  +N+
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62

Query: 351 AGT 353
           AG+
Sbjct: 63  AGS 65

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 293 TLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT---IASVRESDAGQYKCIGKN 349
           +L C A G P+P ++W+K        L   +LT  A  +   I++VR  D G Y CI KN
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLS-KQLTLIANGSELHISNVRYEDTGAYTCIAKN 60

Query: 350 SAGTEEKVITVAVE 363
            AG +E + ++ VE
Sbjct: 61  EAGVDEDISSLFVE 74

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 31/141 (21%)

Query: 38  QFVSAENHEVTVYEGGDAELKC--NTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQ 95
             V+     VTV EGG   L C  ++        W                         
Sbjct: 2   SLVTQPPRPVTVAEGGSVTLPCSFSSSSGSTSVYWY------------------------ 37

Query: 96  VTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGV 154
               +Q   +G ++ I   ++ P+  +      +  L  N    + +L I+ +  +D G 
Sbjct: 38  ----KQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGSKNDFSLTISNLRLSDSGT 93

Query: 155 YICSIQNAQGNVFQDYASIQV 175
           Y C++ N    VF     + V
Sbjct: 94  YTCAVSNPNELVFGAGTRLTV 114

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE---SDAGQYKCIG 347
            + LE   +GRP PTV+W K   P   +  R ++ + A  T   ++    SD+G+Y    
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLS-GRVQIETTASSTSLVIKNAERSDSGKYTLTL 59

Query: 348 KNSAGTEEKVITVAV 362
           KN AG +   I V V
Sbjct: 60  KNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAEN 257
            + QC +  G+P PT  W +   DG+  P       +   L+  N+  GDEG YTC AEN
Sbjct: 1   VEFQCEVG-GDPVPTVLWRK--EDGEL-PKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 258 SAGK 261
             GK
Sbjct: 57  MVGK 60

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 16/72 (22%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA-VY-------TIASVRESDA 340
           G+  TL C+A G P P + W   I+P  + +     +SR  VY        I +V+  D 
Sbjct: 1   GQRATLRCKARGDPEPAIHW---ISPDGKLISN---SSRTLVYDNGTLDILITTVK--DT 52

Query: 341 GQYKCIGKNSAG 352
           G + CI  N+AG
Sbjct: 53  GSFTCIASNAAG 64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 289 GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
           G  +TL C  +G P   V+W K    +         +   S    TI++V   D+G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
            +TP      EG  VT+ C    +P     W KD    L  +           ++  D G
Sbjct: 3   VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVP-LSSSQ---NGFFTPNVSAEDSG 58

Query: 154 VYICSIQNAQGNVFQDYASIQV 175
            Y C   N  G    +  ++ V
Sbjct: 59  TYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 201 IQCVLEAGEPSPTQTWIR------PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
           + C+   G P PT TW++           +             L  +N+   D G YTC+
Sbjct: 3   LTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 255 AENSAGK 261
           A NSAG 
Sbjct: 62  ASNSAGT 68

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE-------LTSRAVYTIASVRESDAG 341
           GE  +  C+ TGRP P ++W K +   +  + R         +T+     I + +  DAG
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60

Query: 342 QYKCIGKNSAG 352
            Y C  +NS G
Sbjct: 61  LYTCTARNSGG 71

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
           +G     +C   +G P P   W++  N      +  +  E G LR   ++  D G Y C+
Sbjct: 13  IGSSLRWECK-ASGNPRPAYRWLK--NGQPLASENRIEVEAGDLRITKLSLSDSGMYQCV 69

Query: 255 AENSAGKEVMNAYIHV 270
           AEN  G    +A + V
Sbjct: 70  AENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA 340
                V  GE +TL C A G P P  +W K   P          +S+  +   +V   D+
Sbjct: 6   PSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLS--------SSQNGFFTPNVSAEDS 57

Query: 341 GQYKCIGKNSAGTE-EKVITVAV 362
           G Y C+  N  G +    +T+ V
Sbjct: 58  GTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RAVYTIASVRESDAGQYKC 345
           GE +   C ATG P P ++W         +  R  +TS       TI  V+ESD G Y C
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITSEGGYGTLTIRDVKESDQGAYTC 59

Query: 346 IGKNSAGT 353
              N+ G 
Sbjct: 60  EAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 290 EPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT-----------SRAVYTIASVRES 338
           E +TL CEA+G P+P+++W        RN+  +E T             +  T+  ++ +
Sbjct: 18  EQITLTCEASGDPIPSITWRTST----RNISSEEKTLDGHIVVRSHARVSSLTLKYIQYT 73

Query: 339 DAGQYKCIGKNSAGTEEKVITVAV 362
           DAG+Y C   N+ G + + + + V
Sbjct: 74  DAGEYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVYTIASVRESDA 340
           V++  G+ L L C   G P P V W K    I   +    + E    A  TI  V   D+
Sbjct: 11  VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDS 70

Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G+Y    KN  G E   +TV+V
Sbjct: 71  GKYSINVKNKYGGETVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 109 VTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEGVYICSIQNAQG 164
           +  EC+ +  P+ T+KW K+    +P +   ++    L + G+ K+DEG Y C  +N  G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 165 NV 166
           NV
Sbjct: 62  NV 63

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 96  VTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADE 152
           V P+   A +G  VT+EC +  +P   IKW K +        I  +G  L I  I   DE
Sbjct: 6   VFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDE 65

Query: 153 GVYICSIQNAQG-NVFQDYASIQ 174
           G Y C  +N +G +  Q    +Q
Sbjct: 66  GTYECEAENIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)

Query: 292 LTLECEATGRPMPTVSWVK---YIAPFD--RNLERDELTSRAVYTIASVRESDAGQYKCI 346
           +  ECE TG+P PTV WVK    + P D  + ++   L       +  + +SD G Y+CI
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNL------QVLGLVKSDEGFYQCI 55

Query: 347 GKNSAG 352
            +N  G
Sbjct: 56  AENDVG 61

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-VLRFNNIATGDEGKYTCIAENSA 259
           ++C+ E G P+P   W R D  G   P+          L+ +N+   D+G+Y C AENS 
Sbjct: 3   LECIAE-GLPTPEVHWDRID--GPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE 59

Query: 260 G 260
           G
Sbjct: 60  G 60

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 289 GEPLTLECEATGRPMPTVSW-----VKYIAPFD--RNLERDELTSRAVYTIASVRESDAG 341
           GE   L+CEA G P PT++W          P D  R ++   L       +++V+ +D  
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTL------ILSNVQPNDTA 54

Query: 342 QYKCIGKNSAGT 353
            Y+C   N  G 
Sbjct: 55  VYQCNASNVHGY 66

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT--IAS 334
            +       V  G   T+ C A G P+P V W+       +       T+  +Y   +++
Sbjct: 3   PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSN 62

Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAV 362
           +         C  +N  G     + V V
Sbjct: 63  ITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEGV 154
               SA  G  + + C+  D   +I W+KD   QL  N    I GE + I      D G+
Sbjct: 1   VESYSAHPGDLLQLRCRLRDDVQSINWTKDGV-QLGENNRTRITGEEVQIKDAVPRDSGL 59

Query: 155 YIC 157
           Y C
Sbjct: 60  YAC 62

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-VLRFNNIATGDEGKYTCIAENSA 259
           ++C+ E G P+P  +WI+    G+   D   ++     L+ +N++  D+G+Y C A NS 
Sbjct: 3   LECIAE-GLPTPEISWIKIG--GELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 260 G 260
           G
Sbjct: 60  G 60

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 293 TLECEATGRPMPTVSWVKYIA--PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
             +CE  G P+PTV W K     P  R    D+ + +    I +V   D G Y C  +N 
Sbjct: 2   EFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLK----IRNVTAGDEGSYTCEAENM 57

Query: 351 AGTEE 355
            G  E
Sbjct: 58  VGKIE 62

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE---VYQELGVLRFNNIATGDEGKYT 252
           G RA ++C    G+P P   WI PD  GK   +     VY   G L        D G +T
Sbjct: 1   GQRATLRCK-ARGDPEPAIHWISPD--GKLISNSSRTLVYDN-GTLDILITTVKDTGSFT 56

Query: 253 CIAENSAGKEVMNAYIHV 270
           CIA N+AG+      +H+
Sbjct: 57  CIASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 106 GSQVTIECK-SNDPSATIKWSKDNQE-------QLPPNMIAGETLIINGITKADEGVYIC 157
           GS VT+ C  S  P   + W K+ +            N ++  TL I+ +T  D G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 158 S 158
            
Sbjct: 61  V 61

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIASVRESDAGQYKCI 346
           G+ +   CEA G P P ++W K  +    DR   R  + S     I+ V   D GQY+C 
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR---RHLVLSSGTLRISRVALHDQGQYECQ 58

Query: 347 GKNSAGTEEKVITVAV 362
             N  G++  V  + V
Sbjct: 59  AVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
           G R  I+C  +A  P P  +W +          + ++ + G L   NI   DEG YTC A
Sbjct: 1   GGRVIIECKPKAA-PKPKFSWSKGTELLVNNSRISIWDD-GSLEILNITKLDEGSYTCFA 58

Query: 256 ENSAGK 261
           EN+ GK
Sbjct: 59  ENNRGK 64

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 208 GEPSPTQTWIRPDNDGKFGPDV--EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
           G P+PT TW +     K    V  E       L   N    D GKYT   +N AG++   
Sbjct: 10  GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS-- 67

Query: 266 AYIHV 270
           A I+V
Sbjct: 68  ATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA---VYTIASVRESDA 340
           + V  G  L L+   +G P PTV+W +    F     R  + S      + I      D 
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G Y     N  G +   + V V
Sbjct: 65  GVYTITVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELT----SRAVYTIASVRESDAGQYKCIGKN 349
           L+C A+G P PT++W+K   PF +   R         +    + SV  SD+G+Y CI +N
Sbjct: 14  LKCPASGNPRPTITWLKDGKPF-KKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72

Query: 350 SAGTEEKVITVAV 362
             G+      V V
Sbjct: 73  KYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)

Query: 209 EPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGDEGKYTC 253
           +  P   W++    N  K+GPD   Y             +E+ VL   N+   D G+YTC
Sbjct: 13  DAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTC 72

Query: 254 IAENSAGKEVMNAYIHVL 271
           +A NS G    +A++ VL
Sbjct: 73  LAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 104 PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE----TLIINGITKADEGVYICS 158
           P GS V ++C  S +P   I W KDN+   P  +        TL +  +   D G Y C 
Sbjct: 7   PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66

Query: 159 IQNAQGNVFQDY 170
           + N  G +   Y
Sbjct: 67  VSNRAGEINATY 78

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           G  L  EC+A+G P P   W+K   P       +        T  S+  SD+G Y+C+ +
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSL--SDSGMYQCVAE 71

Query: 349 NSAGT 353
           N  GT
Sbjct: 72  NKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 104 PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKADEGVY 155
           P GS V ++C  S +P  TI W KD +     + I G        TLI+  +  +D G Y
Sbjct: 7   PAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66

Query: 156 ICSIQNAQGNVFQDY 170
            C ++N  G++   Y
Sbjct: 67  TCIVENKYGSINHTY 81

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPD--------VEVYQELGVLRFNNIATGDEGK 250
           A ++C    G P+P   W     DG  G D        + V  E  V    ++   D G 
Sbjct: 1   ARLECAAT-GHPTPQIAW---QKDG--GTDFPAARERRMHVMPEDDVFFIVDVKIEDTGV 54

Query: 251 YTCIAENSAGKEVMNAYIHVL 271
           Y+C A+N+AG    NA + VL
Sbjct: 55  YSCTAQNTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P I + P+ S T   G    + C  E G P PT +W R  N    G    +      L  
Sbjct: 2   PVITVSPSPSVT--SGGGVTLTCSAEGGPPPPTISWYR--NGSISGGSGGLGSSGSTLTL 57

Query: 241 NNIATGDEGKYTCIAEN 257
           +++ + D G YTC+A N
Sbjct: 58  SSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 208 GEPSPTQTWIRPDNDGKF----GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
           G P PT TW     +G       PD     + G L  +N+   D   Y C A N  G  +
Sbjct: 12  GIPQPTITWRL---NGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL 68

Query: 264 MNAYIHVL 271
            NA++HV+
Sbjct: 69  ANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 106 GSQVTIECKSND-PSATIKWSKDNQEQLPPNMIA---GETLIINGITKADEGVYICSIQN 161
           G +V IECK    P     WSK  +  +  + I+     +L I  ITK DEG Y C  +N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 162 AQG 164
            +G
Sbjct: 61  NRG 63

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 96  VTPRQQSAPEGSQVTIECKS--NDPSATIKWSKDNQEQLPPNM----IAGETLIINGITK 149
           V P       G    +EC      P  T+ W KD Q     N     +    L+I    K
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 150 ADEGVYICSIQNAQG 164
           +DEG Y C   N  G
Sbjct: 61  SDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 284 VSVRP-GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQ 342
           V  RP G  + L+C A+G P P ++W+K   P       +    +   ++ +++  D+G+
Sbjct: 3   VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGK 62

Query: 343 YKCIGKNSAG 352
           Y C   N AG
Sbjct: 63  YTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKY 251
            VG+ A ++C    G P PT +W +  +      D E  + +  G L        DEG Y
Sbjct: 9   AVGEMAVLECSPPRGHPEPTVSWRK--DGQPLNLDNERVRIVDDGNLLIAEARKSDEGTY 66

Query: 252 TCIAENSAGKEVMNA 266
            C+A N  G+    A
Sbjct: 67  KCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDEGKYTCI 254
           A ++C  E G P P  TW++  N     P +     L      L  +N+   D G YTCI
Sbjct: 1   ASLRCHAE-GIPLPRLTWLK--NGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCI 57

Query: 255 AENSAG 260
           A+N AG
Sbjct: 58  AKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA------VYTIASVRESDA--GQY 343
           + ++CEA G P PT SW +    FD   E+D   +        V    +   ++   G+Y
Sbjct: 1   IVIKCEAKGNPPPTFSWTRNGTHFD--PEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEY 58

Query: 344 KCIGKNSAGT 353
           +C   N  GT
Sbjct: 59  QCYASNELGT 68

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 33/186 (17%)

Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSV----RPGEPLTLECE 297
           N    D G Y CI +N    ++M+  + ++++    I    Y  +      GE   + C 
Sbjct: 88  NPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGE---MVCP 144

Query: 298 ATGRPMPTVSWVKYIAPFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAGTEE 355
                + +      I    R L    L  R   + TI  VR++DAG Y C+ K   G + 
Sbjct: 145 NINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKT 204

Query: 356 KVIT--VAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPP 413
             +T  V +E R    P + +     LP+G             V ++GSN +I+C     
Sbjct: 205 YNVTRIVKLEVRDRIIPPTMQ-----LPEG------------VVTSIGSNLTIAC----- 242

Query: 414 RITLRP 419
           R++LRP
Sbjct: 243 RVSLRP 248

Length = 326

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 208 GEPSPTQTW----IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
           G+P PT TW    ++    GKF     +  E G L   ++   D+G+Y C+A N+ G
Sbjct: 9   GDPEPTITWNKDGVQVTESGKF----HISPE-GYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 96  VTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQ-----EQLPPNMIAGET-LIINGITK 149
              +  +  EG+ V +EC      A++ W          E+    ++  E  L+I  ++ 
Sbjct: 1   AEEKVVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSP 60

Query: 150 ADEGVYIC 157
           AD GVY C
Sbjct: 61  ADAGVYTC 68

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of class III semaphorin

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 105 EGSQVTIECKSNDPSATIKW-----SKDNQEQLPPN---MIAGETLIINGITKADEGVYI 156
           E +   +EC    P A++KW         +E++      +     L++  + ++D GVY 
Sbjct: 10  ENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYT 69

Query: 157 C 157
           C
Sbjct: 70  C 70

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascular endothelial growth factor receptor (VEGF)-induced angiogenesis and induces microvascular permeability. This group also includes Sema3B, -C, -D, -E, -G. Length = 91

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
           + G    ++C    G P P   W +           E+     VL+  NI   DEG Y C
Sbjct: 14  LKGQNVTLEC-FALGNPVPVIRWRKILE--PMPATAEISMSGAVLKIFNIQPEDEGTYEC 70

Query: 254 IAENSAGKEVMNAYIHV 270
            AEN  GK+   A ++V
Sbjct: 71  EAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 97  TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEG 153
                 A  GS +  ECK S +P    +W K+ Q     N I      L I  ++ +D G
Sbjct: 5   VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSG 64

Query: 154 VYICSIQNAQGNVFQDYAS 172
           +Y C  +N  G +   YAS
Sbjct: 65  MYQCVAENKHGTI---YAS 80

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 207 AGEPSPTQTWIRPD---NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
           +GEP+PT TW R D    + +    VE Y++L           DEG YT    N  G++ 
Sbjct: 20  SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH 79

Query: 264 MNAYIHV 270
            + ++ V
Sbjct: 80  ASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVY---QELGVLRFNNIATGDEGKYTCIAENSAG 260
           +G P PT TW++     K    +  Y   ++   L   ++   D GKYTCI EN  G
Sbjct: 19  SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 201 IQCVLEA-GEPSPTQTWIRPDNDGKF-----GPDVEVYQELG--VLRFNNIATGD--EGK 250
           I+C  EA G P PT +W R   +G        P V +  + G  V+   N    +  EG+
Sbjct: 3   IKC--EAKGNPPPTFSWTR---NGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGE 57

Query: 251 YTCIAENSAGKEVMNAYIHV 270
           Y C A N  G  + N  IH+
Sbjct: 58  YQCYASNELGTAISNE-IHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 289 GEPLTLECEATGRPMPTVSWVK-----YIAPFD--RNLERDELTSRAVYTIASVRESDAG 341
           G  +T +CEATG P P + W K      +  +   ++  R  ++     TI +V+ SD G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 342 QYKCIGKNSAGT 353
            Y C   N AG+
Sbjct: 61  YYICQTLNVAGS 72

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           G  + L C A G PMP V W+K     +   E +    R V  + ++ ES    Y C+  
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMK--GGEELTKEDEMPVGRNVLELTNIYES--ANYTCVAI 56

Query: 349 NSAGTEEKVITV 360
           +S G  E    V
Sbjct: 57  SSLGMIEATAQV 68

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 104 PEGS---QVTIECKSN-DPSATIKWSKDNQE-QLPPN----MIAGETLIINGITKADEGV 154
           PEGS   +VT+ C++   P AT +W  +  E +  P     ++AG  +I N     D G 
Sbjct: 14  PEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGS 73

Query: 155 YICSIQNAQGNVFQDYASIQ 174
           Y C   N  G V    A+++
Sbjct: 74  YQCLAINRCGTVVSREANLR 93

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 109 VTIEC-KSNDPSATIKWSKDNQEQLPPNMIA----GETLIINGITKADEGVYICSIQNAQ 163
           + +EC     P+  I W K   E LP +        +TL I+ +++ D+G Y C+  N+ 
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGE-LPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 164 GNVFQDY 170
           G+     
Sbjct: 60  GSARHTI 66

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 117 DPSATIKWSKDNQEQLP---PNMIAGETLIINGITKADEGVYICSIQNAQG 164
           DP  T+ W K++ E LP     ++  ++L I  +T  DEG Y C  +N  G
Sbjct: 10  DPVPTVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG 59

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYT 252
           G    + C +  G P    TW +     +    V   +       L  +N+   D G YT
Sbjct: 1   GSSVTLTCSVS-GPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 253 CIA 255
           C+ 
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAG 341
           +V     +   C A G P PT+ W+K    F +         R  +    + SV  SD G
Sbjct: 5   AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 342 QYKCIGKNSAGT 353
            Y C+ +N  G+
Sbjct: 65  NYTCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	471
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG4194|consensus	873		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.83
PHA02826	227	IL-1 receptor-like protein; Provisional	99.82
KOG3515|consensus	741		99.69
KOG3515|consensus	741		99.63
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.62
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.58
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.55
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.53
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.52
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.52
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.52
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.52
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.51
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.51
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.51
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.5
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.49
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.48
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.47
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.47
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.47
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.47
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.46
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.46
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.46
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.45
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.45
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.45
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.45
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.44
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.44
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.44
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.44
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.43
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.43
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.43
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.43
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.43
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.43
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.43
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.42
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.42
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.42
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.41
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.41
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.4
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.4
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.4
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.39
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.39
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.39
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.39
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.39
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.38
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.38
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.38
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.37
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.37
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.37
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.36
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.36
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.36
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.36
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.35
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.35
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.35
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.34
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.34
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.34
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.34
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.33
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.32
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.32
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.32
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.32
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.32
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.32
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.32
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.31
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.31
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.31
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.31
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.31
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.31
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.31
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.3
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.3
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.3
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.3
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.29
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.29
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.29
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.29
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.29
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.29
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.28
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.28
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.28
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.28
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.27
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.27
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.27
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.27
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.27
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.27
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.27
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.26
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.26
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.25
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.25
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.25
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.25
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.25
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.24
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.24
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.24
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.23
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.23
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.23
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.23
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.22
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.22
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.21
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.21
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.21
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.2
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.2
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.19
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.18
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.17
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.16
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.16
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.16
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.16
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.15
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.14
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.14
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.14
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.13
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.11
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.11
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.09
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.09
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.08
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.08
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.08
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.08
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.06
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.06
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.04
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.04
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.04
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.03
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.03
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.02
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.02
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.02
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.01
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.01
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.01
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.0
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.0
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.0
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.99
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.99
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.99
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.98
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.98
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.96
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.95
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.95
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.94
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.91
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.9
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.9
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.88
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.88
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.88
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.85
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.85
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.85
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.84
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.82
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.82
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.82
smart00409	86	IG Immunoglobulin.	98.81
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.81
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.8
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.79
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.79
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.77
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.76
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.75
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.74
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.73
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.72
PHA03376	221	BARF1; Provisional	98.7
smart00409	86	IG Immunoglobulin.	98.67
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.67
PHA03376	221	BARF1; Provisional	98.65
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.64
PHA03270	466	envelope glycoprotein C; Provisional	98.64
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.63
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.63
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.6
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.59
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.58
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.56
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.56
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.52
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.51
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.49
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.49
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.48
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.48
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.47
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.46
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.46
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.45
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.44
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.43
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.42
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.4
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.4
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.37
PHA03273	486	envelope glycoprotein C; Provisional	98.36
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.36
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.35
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.35
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.34
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.34
PHA03271	490	envelope glycoprotein C; Provisional	98.33
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.32
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.32
PHA03269	566	envelope glycoprotein C; Provisional	98.32
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.32
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.32
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.32
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.32
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.27
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.25
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.24
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.23
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.23
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.22
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.22
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.21
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.21
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.2
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.2
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.19
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.18
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.18
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.18
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.17
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.16
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.15
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.15
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.14
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.13
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.11
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.1
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.1
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.1
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.09
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.09
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.05
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.05
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.05
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.03
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.03
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.02
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.02
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.01
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.0
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.0
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.0
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.99
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.97
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.93
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.91
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.91
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.91
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.91
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.9
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.89
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.88
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.88
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.88
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.86
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.84
PHA03269	566	envelope glycoprotein C; Provisional	97.81
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.81
smart00407	75	IGc1 Immunoglobulin C-Type.	97.8
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.79
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.79
PHA03270	466	envelope glycoprotein C; Provisional	97.79
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.77
PHA03273	486	envelope glycoprotein C; Provisional	97.75
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.72
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.71
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.71
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.71
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.71
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.7
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.7
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.68
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.67
PHA03271	490	envelope glycoprotein C; Provisional	97.65
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.63
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.63
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.63
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.61
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.6
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.6
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.55
KOG1480|consensus	909		97.5
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.5
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.49
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.49
smart00407	75	IGc1 Immunoglobulin C-Type.	97.4
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.39
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.36
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.35
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.34
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.29
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.29
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.28
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.27
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.27
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.26
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.16
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.13
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.12
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.07
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.03
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.02
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.0
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.0
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.99
smart00406	81	IGv Immunoglobulin V-Type.	96.95
smart00406	81	IGv Immunoglobulin V-Type.	96.95
PHA02633	63	hypothetical protein; Provisional	96.94
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.89
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.87
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.82
KOG0613|consensus	1205		96.7
PHA02633	63	hypothetical protein; Provisional	96.68
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.66
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.66
KOG0613|consensus	1205		96.63
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.63
PHA02982	251	hypothetical protein; Provisional	96.36
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.2
KOG1480|consensus	909		96.17
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.99
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.5
PHA02982	251	hypothetical protein; Provisional	95.45
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.3
KOG4597|consensus	560		95.06
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.95
PHA03283	542	envelope glycoprotein E; Provisional	94.53
PHA03282	540	envelope glycoprotein E; Provisional	94.17
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.11
PHA03052	69	Hypothetical protein; Provisional	93.0
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.84
KOG4597|consensus	560		92.72
PHA03286	492	envelope glycoprotein E; Provisional	92.7
PHA03281	642	envelope glycoprotein E; Provisional	92.25
PHA03042	286	CD47-like protein; Provisional	92.13
PHA03042	286	CD47-like protein; Provisional	91.32
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.71
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	90.69
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.56
PHA02865	338	MHC-like TNF binding protein; Provisional	90.54
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.53
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.51
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	89.44
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	89.22
KOG1026|consensus	774		88.86
PHA02914	500	Immunoglobulin-like domain protein; Provisional	88.58
PHA03282	540	envelope glycoprotein E; Provisional	86.31
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.87
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	84.0
PHA02865	338	MHC-like TNF binding protein; Provisional	83.74
PHA03240	258	envelope glycoprotein M; Provisional	83.64
PHA03283	542	envelope glycoprotein E; Provisional	81.14

>KOG3513|consensus

Probab=100.00  E-value=5.4e-49  Score=388.38  Aligned_cols=409  Identities=27%  Similarity=0.440  Sum_probs=336.9

Q ss_pred             ccccCcCCCCCeeeecccccccccccccccceeeeccceEEEEecCcEEEEEEee--eCCccEEEeccchhhh-------
Q psy17058          8 GIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTY--YAPGRWMWLNFYSFLS-------   78 (471)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~--~~~~~~~w~~~~~~~~-------   78 (471)
                      -.+.|.+++-|.+|++.|+...+++ +.++.|.......+.|.+|+.+.|.|..+  .+..++.|........       
T Consensus       108 d~G~YqC~AsN~~Gta~S~~~~l~~-~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r  186 (1051)
T KOG3513|consen  108 DQGIYQCFASNKLGTAVSREARLQF-GFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRR  186 (1051)
T ss_pred             hcceeEEEeecccceeeccceeecc-cccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcce
Confidence            4678999999999999999999999 99999999999999999999999999987  4566888876433211       


Q ss_pred             -------------------heeeeeeee----------------------cCCCCcEEEc-CCceeecCCCcEEEEee-C
Q psy17058         79 -------------------LIIICLAYL----------------------SPQANEVQVT-PRQQSAPEGSQVTIECK-S  115 (471)
Q Consensus        79 -------------------~~~~c~~~~----------------------~~~~~~v~~~-p~~~~v~~G~~v~l~C~-~  115 (471)
                                         ..|.|.+..                      ...+|.+.+. |.......|+.+.|.|- .
T Consensus       187 ~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~  266 (1051)
T KOG3513|consen  187 VFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFAL  266 (1051)
T ss_pred             eEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEec
Confidence                               125777652                      1234555444 44677889999999999 9


Q ss_pred             CCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCcee
Q psy17058        116 NDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQT  192 (471)
Q Consensus       116 ~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~  192 (471)
                      |+|.|++.|.|.++..++.+..   .+.+|.|.+++.+|+|.|+|.|.|..|. ......+.|  ..+|.....+ .+..
T Consensus       267 G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v--~a~P~w~~~~-~d~~  342 (1051)
T KOG3513|consen  267 GNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTV--YAPPYWLQKP-QDTE  342 (1051)
T ss_pred             CCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEE--ecCchhhccc-ceeE
Confidence            9999999999998877776554   6789999999999999999999999986 554444444  4778776654 4567


Q ss_pred             EEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       193 v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +..|+.++|.|.+ .+.|.++|+|++|+..+....+ ....-..+.|.|.+++..|+|.|.|.|+|..|....++.|.|.
T Consensus       343 ~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~  421 (1051)
T KOG3513|consen  343 ADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL  421 (1051)
T ss_pred             ecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence            8899999999999 8999999999999998765544 1122236889999999999999999999999999999999999


Q ss_pred             eC-CceeeCCCcc-EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        272 TL-PAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       272 ~~-p~~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      .. |.+...+... ..+..|..+.|.|...+.|.|.++|.++++.+... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus       422 a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~-~r~~i~edGtL~I~n~t~~DaG~YtC~A~N  500 (1051)
T KOG3513|consen  422 ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS-GRIRILEDGTLEISNVTRSDAGKYTCVAEN  500 (1051)
T ss_pred             ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC-ceEEECCCCcEEecccCcccCcEEEEEEEc
Confidence            75 7777666554 37788999999999999999999999998844333 234566789999999999999999999999


Q ss_pred             CCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCe
Q psy17058        350 SAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDI  429 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~  429 (471)
                      ..|....+..|.|++.                                               ++|+..|.+..+..|+.
T Consensus       501 ~~G~a~~~~~L~Vkd~-----------------------------------------------tri~~~P~~~~v~~g~~  533 (1051)
T KOG3513|consen  501 KLGKAESTGNLIVKDA-----------------------------------------------TRITLAPSNTDVKVGES  533 (1051)
T ss_pred             ccCccceEEEEEEecC-----------------------------------------------ceEEeccchhhhccCce
Confidence            9999999999999985                                               79999998999999999


Q ss_pred             EEEEEEecccCC--ceEEEecCCCCCCCce-----EEe----cCeEEECCCC
Q psy17058        430 ANIRCSAIGATP--ISIRWQPLQGYFPSHV-----VEY----NGELRLGPHK  470 (471)
Q Consensus       430 ~~l~C~~~g~p~--~~v~W~~~g~~l~~~~-----~~~----~~~l~i~~~~  470 (471)
                      +.|.|++...|.  +.+.|.+||+++....     ...    .+.|+|+++.
T Consensus       534 v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~  585 (1051)
T KOG3513|consen  534 VTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVS  585 (1051)
T ss_pred             EEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeec
Confidence            999999987766  5789999999875332     112    2558888763

>KOG3513|consensus

Probab=100.00  E-value=7.6e-42  Score=337.93  Aligned_cols=386  Identities=23%  Similarity=0.376  Sum_probs=305.8

Q ss_pred             cceeeeccceEEEEecCc--EEEEEEee-eCCccEEEeccchhhh-------------------------heeeeeeeec
Q psy17058         37 TQFVSAENHEVTVYEGGD--AELKCNTY-YAPGRWMWLNFYSFLS-------------------------LIIICLAYLS   88 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~--~~l~C~~~-~~~~~~~w~~~~~~~~-------------------------~~~~c~~~~~   88 (471)
                      |.|.......+...+-++  ++|.|++. +|.+.+.|.+++..+.                         ..|.|+|...
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN~  119 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASNK  119 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeecc
Confidence            455555554554444444  99999999 6778999998765332                         2478998732


Q ss_pred             -----CCC--------CcEE-EcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--c----cCcEEEEcC
Q psy17058         89 -----PQA--------NEVQ-VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM--I----AGETLIING  146 (471)
Q Consensus        89 -----~~~--------~~v~-~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--~----~~~~L~i~~  146 (471)
                           ..+        +.+. -....+.+.+|+.+.|.|.  .+.|.+.+.|..+....+....  .    ..+.|.+.+
T Consensus       120 ~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~  199 (1051)
T KOG3513|consen  120 LGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSN  199 (1051)
T ss_pred             cceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEee
Confidence                 111        1121 2346788999999999999  7788899999988544433221  1    678999999


Q ss_pred             CCCCCCeEEEEEEEecCCce--eeeeEEEEEe-----eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeC
Q psy17058        147 ITKADEGVYICSIQNAQGNV--FQDYASIQVD-----KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP  219 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~-----~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~  219 (471)
                      +..+|.+.|.|.+.+.....  ......|.+.     ...+|.+....+.......|+.+.|.|.+ .|+|-|.+.|.|.
T Consensus       200 V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~  278 (1051)
T KOG3513|consen  200 VETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKV  278 (1051)
T ss_pred             cchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeC
Confidence            99999999999998743331  2223334431     23456666666656677899999999999 8999999999999


Q ss_pred             CCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058        220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~  299 (471)
                      ++. +...+......+.+|.|.+++.+|+|.|.|.|.|..|.......|.|..+|.+...+ .+..+..|++++|.|.+.
T Consensus       279 ~g~-~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~-~d~~~~~gs~v~~eC~a~  356 (1051)
T KOG3513|consen  279 DGK-PPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP-QDTEADTGSNVTLECKAS  356 (1051)
T ss_pred             CCC-CCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccc-ceeEecCCCCeEEEEEec
Confidence            986 566666666668899999999999999999999999999999999999999988765 467888999999999999


Q ss_pred             ecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCc
Q psy17058        300 GRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD  378 (471)
Q Consensus       300 g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~  378 (471)
                      |.|.|+++|++||.++....+ ....-..+.|.|.+++..|+|.|+|.|+|..|...+++.|.|...             
T Consensus       357 g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~-------------  423 (1051)
T KOG3513|consen  357 GKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS-------------  423 (1051)
T ss_pred             CCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc-------------
Confidence            999999999999999874322 112345679999999999999999999999999999999999986             


Q ss_pred             cccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCe--eeeeCCCeEEEEEEecccCCceEEEecCCCCCCCc
Q psy17058        379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR--QTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH  456 (471)
Q Consensus       379 ~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~  456 (471)
                                                       +|.|...+..  ..+..|..+.|.|...+.|.|.++|.|+|+.+..+
T Consensus       424 ---------------------------------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~  470 (1051)
T KOG3513|consen  424 ---------------------------------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS  470 (1051)
T ss_pred             ---------------------------------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC
Confidence                                             4677666666  46778999999999999999999999999977777


Q ss_pred             eEE---ecCeEEECCCCC
Q psy17058        457 VVE---YNGELRLGPHKH  471 (471)
Q Consensus       457 ~~~---~~~~l~i~~~~~  471 (471)
                      .++   .+|+|.|.+++|
T Consensus       471 ~r~~i~edGtL~I~n~t~  488 (1051)
T KOG3513|consen  471 GRIRILEDGTLEISNVTR  488 (1051)
T ss_pred             ceEEECCCCcEEecccCc
Confidence            666   789999999885

>KOG4222|consensus

Probab=100.00  E-value=4.1e-36  Score=294.17  Aligned_cols=389  Identities=28%  Similarity=0.447  Sum_probs=310.6

Q ss_pred             ccccceeeeccceEEEEecCcEEEEEEeee-CCccEEEeccchh-hh------------------------------hee
Q psy17058         34 GEVTQFVSAENHEVTVYEGGDAELKCNTYY-APGRWMWLNFYSF-LS------------------------------LII   81 (471)
Q Consensus        34 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~~w~~~~~~-~~------------------------------~~~   81 (471)
                      .++++.++-.++++.|..|+.++|.|.+.. +++.++|++.+.. +.                              ..|
T Consensus        28 qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y  107 (1281)
T KOG4222|consen   28 QDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY  107 (1281)
T ss_pred             ccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence            456778888899999999999999999995 5889999997731 11                              125


Q ss_pred             eeeeee--------------cCCCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC--CCc----ccC
Q psy17058         82 ICLAYL--------------SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP--PNM----IAG  139 (471)
Q Consensus        82 ~c~~~~--------------~~~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~--~~~----~~~  139 (471)
                      .|.+..              ...+-.+.+.|.++.+..|+.++|+|.  .++|.+.+.|.|+ +..+.  ...    ..+
T Consensus       108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~~lisg  186 (1281)
T KOG4222|consen  108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPIIALISG  186 (1281)
T ss_pred             EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeEEEecC
Confidence            666642              123455667788889999999999999  8999999999999 55554  111    178


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeC
Q psy17058        140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP  219 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~  219 (471)
                      +.|.|.++...|.|.|.|.+.|..|...+..+.+.|+  ++|.+...+ ....+..|..+.+.|.+ .+.|.+.+.|.++
T Consensus       187 G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--e~P~f~~rp-~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~  262 (1281)
T KOG4222|consen  187 GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--EKPWFWKRP-KDLAVLVGAAAEFDCRV-GGDPQPTVRWKKD  262 (1281)
T ss_pred             CcEEEeccccCCCceeeeeecccccccccccceeeec--cCCcccccc-ccceeeccccccccccc-CCCCCCceeeecc
Confidence            8999999999999999999999999877777778776  667766555 45678899999999999 9999999999997


Q ss_pred             CCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058        220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~  299 (471)
                      +..++ ..++.+..+..+|.|.+++..|.|.|.|.+.|..|.......+.|+.+|.+...+. ...+..|..++|.|++.
T Consensus       263 ~~~~P-~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~-dq~v~lg~~vt~pc~~~  340 (1281)
T KOG4222|consen  263 DPSLP-RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPR-DQKVALGGTVTFPCETL  340 (1281)
T ss_pred             CCCCC-ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccC-ccccccCceEEeeeecC
Confidence            77644 45566666568999999999999999999999999999999999999999988775 45778899999999999


Q ss_pred             ecCCCeEEEEeCCccCC-------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCC
Q psy17058        300 GRPMPTVSWVKYIAPFD-------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS  372 (471)
Q Consensus       300 g~p~~~i~W~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  372 (471)
                      |+|.|.+.|.+.+...-       ....+.......+|+|.+++..|.|.|.|...+..|.......+.+...-...   
T Consensus       341 gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~---  417 (1281)
T KOG4222|consen  341 GNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDS---  417 (1281)
T ss_pred             CCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccC---
Confidence            99999999999875421       11112233445599999999999999999999888877655555544321110   


Q ss_pred             CCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCC
Q psy17058        373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGY  452 (471)
Q Consensus       373 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~  452 (471)
                                                           ..+|.|...+.+++..++..+.|.|.+.|.|.+.+.|+++|-.
T Consensus       418 -------------------------------------rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~  460 (1281)
T KOG4222|consen  418 -------------------------------------RPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCN  460 (1281)
T ss_pred             -------------------------------------CCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccc
Confidence                                                 1268888999999999999999999999999999999999876


Q ss_pred             CCCceE----EecCeEEECCC
Q psy17058        453 FPSHVV----EYNGELRLGPH  469 (471)
Q Consensus       453 l~~~~~----~~~~~l~i~~~  469 (471)
                      +.....    ...++|+|..+
T Consensus       461 v~~~d~~~s~~~~~~l~i~dl  481 (1281)
T KOG4222|consen  461 VMNPDSRISQQEIGSLRIRDL  481 (1281)
T ss_pred             cccCCcccceeeeceeeeeee
Confidence            643322    25577777654

>KOG4221|consensus

Probab=100.00  E-value=1.5e-34  Score=284.86  Aligned_cols=427  Identities=21%  Similarity=0.323  Sum_probs=308.6

Q ss_pred             cceeeeccceEEEEecCcEEEEEEeeeC---CccEEEeccchhhhh------------------------------eeee
Q psy17058         37 TQFVSAENHEVTVYEGGDAELKCNTYYA---PGRWMWLNFYSFLSL------------------------------IIIC   83 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~~~w~~~~~~~~~------------------------------~~~c   83 (471)
                      +-.+..++++.  .+|..+.|.|.+...   ..++.|.+++..+..                              .|+|
T Consensus        41 ~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc  118 (1381)
T KOG4221|consen   41 PLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQC  118 (1381)
T ss_pred             cceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEE
Confidence            33455555544  899999999998743   458999987665442                              3678


Q ss_pred             eeee--------------cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEE
Q psy17058         84 LAYL--------------SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLII  144 (471)
Q Consensus        84 ~~~~--------------~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i  144 (471)
                      .+..              ....+.+...+.+.++..|+++.|.|. .+.+.+.+.|.++ ..+++....    .++.|.|
T Consensus       119 ~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn-~~pl~~~~r~i~lpsG~L~I  197 (1381)
T KOG4221|consen  119 LATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKN-DQPLPLDSRVIVLPSGALEI  197 (1381)
T ss_pred             EEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecc-cccccCCCcEEEcCCCcEEe
Confidence            8753              245667777888999999999999999 7788889999999 544443223    7889999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccC---CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCC
Q psy17058        145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN  221 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~  221 (471)
                      .+++..|.|.|+|.+.+......+..+.++|.....   -..++..+....+.+|+++.|.|.+ .+.|.+.|.|.||+.
T Consensus       198 ~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~  276 (1381)
T KOG4221|consen  198 SGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGE  276 (1381)
T ss_pred             cccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCe
Confidence            999999999999999998777667777888762110   1123444556678899999999999 899999999999998


Q ss_pred             CCCcCCCceEEe-eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee
Q psy17058        222 DGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG  300 (471)
Q Consensus       222 ~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g  300 (471)
                      .+.... .++.. ..+.|.|.+++..|+|.|+|+|+|........+.|.|..+|.+.-.|. ...+.++.++.|.|.+.|
T Consensus       277 ~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~-~l~A~e~~die~ec~~~g  354 (1381)
T KOG4221|consen  277 KISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPT-TLVAHESMDIEFECPVSG  354 (1381)
T ss_pred             eeeecc-eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCc-ceeeeeccceeEeCCCCC
Confidence            877665 33333 267899999999999999999999777778888999999998877664 567778999999999999


Q ss_pred             cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCC--CCCCCCc
Q psy17058        301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI--SPRPGAD  378 (471)
Q Consensus       301 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~  378 (471)
                      .|.+++.|+|+|..+............. |.|..+-..|.|.|.|.+.|..|.......|.+...|.++..  .+....+
T Consensus       355 ~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~  433 (1381)
T KOG4221|consen  355 KPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRD  433 (1381)
T ss_pred             CCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcc
Confidence            9999999999998876533322333333 999999999999999999999999999998877766533221  1111111


Q ss_pred             c--ccCCC-----cccCCCCCCC--------------------------c--eEEEcCCcceEEe------------eec
Q psy17058        379 I--LPDGD-----EYYRPEPEEG--------------------------E--YVYAVGSNASISC------------SVE  411 (471)
Q Consensus       379 ~--~~~~~-----~w~~~~~~~~--------------------------~--~~~~~~~~~~y~c------------~~~  411 (471)
                      .  ...+.     +|..|...++                          +  .+.++.....|.|            ...
T Consensus       434 lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~  513 (1381)
T KOG4221|consen  434 LVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSA  513 (1381)
T ss_pred             eecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCC
Confidence            1  11111     5543332111                          1  6667777777888            112


Q ss_pred             CCeeEEcCCe-eeeeCCCeEEEEEEecccCCc----eEEEecCCCCCCCce---EE--ecCeEEECCCC
Q psy17058        412 PPRITLRPVR-QTVKPGDIANIRCSAIGATPI----SIRWQPLQGYFPSHV---VE--YNGELRLGPHK  470 (471)
Q Consensus       412 ~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~----~v~W~~~g~~l~~~~---~~--~~~~l~i~~~~  470 (471)
                      +-++...++. .....+..--++|.+...|++    .|+|||.+....+..   ++  +..+++|+++.
T Consensus       514 pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~  582 (1381)
T KOG4221|consen  514 PLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLE  582 (1381)
T ss_pred             ceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCC
Confidence            2223222221 225567777899999999888    999999765544221   22  34567777664

>KOG4221|consensus

Probab=100.00  E-value=2.4e-33  Score=276.46  Aligned_cols=325  Identities=25%  Similarity=0.432  Sum_probs=253.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-C--CCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCC-----CCCeE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-S--NDPSATIKWSKDNQEQLPPNMI------AGETLIINGITK-----ADEGV  154 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~--~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~-----~D~G~  154 (471)
                      ..+..|.++|.+.  .+|..+.|.|. .  ....+.+.|.++ |..+.....      .+++|.|.++..     .|.|.
T Consensus        39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkD-g~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~  115 (1381)
T KOG4221|consen   39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKD-GSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGV  115 (1381)
T ss_pred             cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccC-chhhhhhhhhHHhhccCCceeEeeecccccccccCce
Confidence            3567788888854  89999999999 2  224678999988 666544321      788999999887     88999


Q ss_pred             EEEEEEec-CCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe
Q psy17058        155 YICSIQNA-QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ  233 (471)
Q Consensus       155 Y~C~~~~~-~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  233 (471)
                      |+|.|+-. .+...+..+.|.+.  ..+.+...+. +..+..|+++.|.|.+ .+.|-+.+.|.+++..++...++.. .
T Consensus       116 Yqc~atv~~~gsi~Sr~a~v~~a--~~~~f~~~~~-~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~r~i~-l  190 (1381)
T KOG4221|consen  116 YQCLATVEDVGSILSRTAKVALA--GLADFALQPE-STTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDSRVIV-L  190 (1381)
T ss_pred             EEEEEEccccceeecceEEEEec--ccCccccCcc-ceeEecCCcEEEEEEE-cCccCceeEEecccccccCCCcEEE-c
Confidence            99999876 44434444445443  4555555544 4578899999999999 6688889999999998888875544 4


Q ss_pred             eeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCc-----eeeCCCccEEecCCCcEEEEEEEeecCCCeEE
Q psy17058        234 ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPA-----VTITPSEYVSVRPGEPLTLECEATGRPMPTVS  307 (471)
Q Consensus       234 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~-----~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~  307 (471)
                      -++.|.|.+++..|.|.|.|.+++.... .+..+.|+|...|.     .++..+....+.+|+++.|.|.+.|.|.|.|.
T Consensus       191 psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~  270 (1381)
T KOG4221|consen  191 PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVK  270 (1381)
T ss_pred             CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceE
Confidence            4889999999999999999999987654 45667788873332     12333345678899999999999999999999


Q ss_pred             EEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCccc
Q psy17058        308 WVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY  387 (471)
Q Consensus       308 W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~  387 (471)
                      |.+++..+............+.|.|.+++.+|+|.|+|+|.|..-...+...|.|..+                      
T Consensus       271 Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~----------------------  328 (1381)
T KOG4221|consen  271 WLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP----------------------  328 (1381)
T ss_pred             EeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC----------------------
Confidence            9999998876555455667889999999999999999999996666677777878764                      


Q ss_pred             CCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE---ecCeE
Q psy17058        388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE---YNGEL  464 (471)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~l  464 (471)
                                               |.|+..|......++.++.|.|.+.|.|.|.+.|+|||..+..+..+   .++.|
T Consensus       329 -------------------------P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~l  383 (1381)
T KOG4221|consen  329 -------------------------PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNL  383 (1381)
T ss_pred             -------------------------CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCc
Confidence                                     67777788888888999999999999999999999999777555433   23336


Q ss_pred             EECC
Q psy17058        465 RLGP  468 (471)
Q Consensus       465 ~i~~  468 (471)
                      +|..
T Consensus       384 rIlg  387 (1381)
T KOG4221|consen  384 RILG  387 (1381)
T ss_pred             EEEE
Confidence            6653

>KOG4222|consensus

Probab=100.00  E-value=1.8e-31  Score=261.82  Aligned_cols=332  Identities=27%  Similarity=0.452  Sum_probs=264.0

Q ss_pred             ecCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCC-----CCCCeE
Q psy17058         87 LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGIT-----KADEGV  154 (471)
Q Consensus        87 ~~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~-----~~D~G~  154 (471)
                      ....+|.+...|.++.+..|+.++|.|. .+.|.++++|||++.........      ..+.|.+..+-     ..|.|.
T Consensus        27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~  106 (1281)
T KOG4222|consen   27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGV  106 (1281)
T ss_pred             cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCce
Confidence            3467899999999999999999999999 99999999999994333332211      34444444321     239999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEE
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVY  232 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~  232 (471)
                      |.|.+.|..+...+..+.+.+.+. ...+.+.+.. ..+..|+.+.|.|.-..+.|.+.+.|.|+|+.+..  ...+.+.
T Consensus       107 y~cvasn~~g~avSr~a~L~vavl-rddfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li  184 (1281)
T KOG4222|consen  107 YSCVASNRLGEAVSRGASLIVAVL-RDDFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI  184 (1281)
T ss_pred             eEeeecCccceeeecCceEEEEEe-chhcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe
Confidence            999999999887777778887653 2334444443 56778999999998888999999999999998663  2333334


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeC
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY  311 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~  311 (471)
                      . ++.|.|.++...|.|.|.|.++|..|. .+..++|.|+++|.+...+. ...+..|..+.+.|.+.|.|.|++.|.++
T Consensus       185 s-gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~-~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~  262 (1281)
T KOG4222|consen  185 S-GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPK-DLAVLVGAAAEFDCRVGGDPQPTVRWKKD  262 (1281)
T ss_pred             c-CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccc-cceeecccccccccccCCCCCCceeeecc
Confidence            4 889999999999999999999999887 46678999999998877764 56788899999999999999999999998


Q ss_pred             CccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCC
Q psy17058        312 IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP  391 (471)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~  391 (471)
                      +..+..... .....+.+|.|..++..|.|.|.|.+.|..|.......++|+.+                          
T Consensus       263 ~~~~P~~ry-~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap--------------------------  315 (1281)
T KOG4222|consen  263 DPSLPRSRY-SILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP--------------------------  315 (1281)
T ss_pred             CCCCCccce-eeeeccccccccccCCCcccceeeeccccccccccccceEEecC--------------------------
Confidence            877764432 23445578999999999999999999999999999999999885                          


Q ss_pred             CCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCC-C-------CCceEE---e
Q psy17058        392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGY-F-------PSHVVE---Y  460 (471)
Q Consensus       392 ~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~-l-------~~~~~~---~  460 (471)
                                           |.|...+.+..+..|..+.|.|.+.|+|+|.+.|.|.|.. |       ..+.+.   .
T Consensus       316 ---------------------P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~  374 (1281)
T KOG4222|consen  316 ---------------------PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP  374 (1281)
T ss_pred             ---------------------cccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC
Confidence                                 6777778888999999999999999999999999998743 2       112221   3


Q ss_pred             cCeEEECCCC
Q psy17058        461 NGELRLGPHK  470 (471)
Q Consensus       461 ~~~l~i~~~~  470 (471)
                      .++|+|.++.
T Consensus       375 ~g~L~it~v~  384 (1281)
T KOG4222|consen  375 TGTLTITNVR  384 (1281)
T ss_pred             CCCccccccc
Confidence            4577777664

>KOG4194|consensus

Probab=99.97  E-value=1.4e-29  Score=233.66  Aligned_cols=272  Identities=28%  Similarity=0.468  Sum_probs=225.7

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCCC-Cc-------------------ccCcEEEE
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLPP-NM-------------------IAGETLII  144 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~~-~~-------------------~~~~~L~i  144 (471)
                      ....|+|..+|..+....|+.++|+|. .+  ..+..+.|.+++. ..+. ..                   ...+.|.+
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dne-vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L  578 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNE-VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHL  578 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccc-cCcccchhcchhhhhhhccCccchhhhhhheeee
Confidence            467789999999999999999999999 33  4456899999843 3221 00                   02357999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC-C
Q psy17058        145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-G  223 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~-~  223 (471)
                      .||+..|+|.|+|.++|..|...+..+.++|.  ..|.+...| .+.++..|+.+.|.|.+ .|.|.|.+.|.|+|+. .
T Consensus       579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~--~~PsFtktP-~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdF  654 (873)
T KOG4194|consen  579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN--QAPSFTKTP-EDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDF  654 (873)
T ss_pred             eeeecccCceEEEEEecccCcchhheeEEEee--ccCccccCc-ccceeecccceeeeeec-cCCCCcceeehhcCCCCC
Confidence            99999999999999999999877777777776  567766665 46689999999999999 8999999999999876 3


Q ss_pred             CcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec
Q psy17058        224 KFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR  301 (471)
Q Consensus       224 ~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~  301 (471)
                      +..  .++.+..++..+.|.+++.+|.|.|+|.|.|..|..+.+++|.|.+.|.+.+. .....+..|+++.|.|.+.+.
T Consensus       655 PAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~  733 (873)
T KOG4194|consen  655 PAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGA  733 (873)
T ss_pred             chhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc-ccceEEEecceEEEEEecCCC
Confidence            332  35556666788999999999999999999999999999999999999887654 456788999999999999998


Q ss_pred             CC-CeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        302 PM-PTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       302 p~-~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      |. |++.|+|+++++.-..+......+..|.+.+...+|+|.|+|...|..|.....+.+.+...
T Consensus       734 ~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~  798 (873)
T KOG4194|consen  734 PADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK  798 (873)
T ss_pred             CCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence            87 89999999998764444345667778999999999999999999999999988887777654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=219.71  Aligned_cols=249  Identities=19%  Similarity=0.297  Sum_probs=175.5

Q ss_pred             ceeecCCCcEEEEee------CCCCCCeEEEEeCCCCCCCCCc--ccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058        100 QQSAPEGSQVTIECK------SNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~------~~~p~~~v~W~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      ...+.+|+.+.|.|.      .+.|.+.++|+|++ .......  ..+..|.|.++..+|+|.|+|.+.|..+. ...+.
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g-~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~  112 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRG-ADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSL  112 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECC-CccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEE
Confidence            345778999999998      37788899999994 3222111  13456899999999999999999998876 55667


Q ss_pred             EEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc----cCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCC
Q psy17058        172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL----EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD  247 (471)
Q Consensus       172 ~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  247 (471)
                      .|.|....++.+... .....+.+|+.+.|.|..    ..+.|.+.++|+++.. + ...++... .++.|.|.+++.+|
T Consensus       113 ~L~V~~~~~~~~~~~-~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~-~~~~L~i~~v~~~d  188 (326)
T PHA02785        113 NLTIVSVSESNIDLI-SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR-TPGIITIEDVRKND  188 (326)
T ss_pred             EEEEEecCCCcccee-eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec-CCCeEEEeecChhh
Confidence            777765443333221 123356789999999972    1356889999998542 1 22233222 25689999999999


Q ss_pred             CeEEEEEEEcCCCceEE----EEEEEEEe--CCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeCCccCCCc
Q psy17058        248 EGKYTCIAENSAGKEVM----NAYIHVLT--LPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKYIAPFDRN  318 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~~~~----~~~l~V~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~~~~~~~~  318 (471)
                      .|.|+|.+.|..+....    .+.|.|..  .|.....| ....+..|+.+.|.|.+.|.|.+   .+.|+++|..+...
T Consensus       189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~  267 (326)
T PHA02785        189 AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED  267 (326)
T ss_pred             CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence            99999999998776432    34455542  12222333 35677889999999999998864   79999999877431


Q ss_pred             c-----c--c--------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        319 L-----E--R--------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       319 ~-----~--~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      .     .  .        ........|.|.+++.+|+|.|+|.|.|..|...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            1     0  0        0011246899999999999999999999885543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=2.8e-24  Score=198.58  Aligned_cols=212  Identities=18%  Similarity=0.304  Sum_probs=154.1

Q ss_pred             eEEcCCeEEEEEEcc----CCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        192 TFIVGDRADIQCVLE----AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      .+.+|+.+.|.|.+.    .+.|.++++|+|++....   +......+..|.|.++..+|+|.|+|.++|..+....++.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~  113 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN  113 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence            355799999999862    577888999999975411   1222233445889999999999999999999887777888


Q ss_pred             EEEEeCCc--eeeCCCccEEecCCCcEEEEEE-----EeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCC
Q psy17058        268 IHVLTLPA--VTITPSEYVSVRPGEPLTLECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       268 l~V~~~p~--~~~~~~~~~~~~~g~~v~l~C~-----~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      |.|.....  +... .....+.+|..+.|.|.     ..+.|++.++|+++.. +... + ......+.|.|.+++.+|+
T Consensus       114 L~V~~~~~~~~~~~-~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~-r-~~~~~~~~L~i~~v~~~d~  189 (326)
T PHA02785        114 LTIVSVSESNIDLI-SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNK-R-LKQRTPGIITIEDVRKNDA  189 (326)
T ss_pred             EEEEecCCCcccee-eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCc-c-eEecCCCeEEEeecChhhC
Confidence            88865432  2211 12235678999999997     2357888999988643 2211 1 1222356899999999999


Q ss_pred             eEEEEEEEcCCCceEE----EEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeE
Q psy17058        341 GQYKCIGKNSAGTEEK----VITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRIT  416 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~----~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~  416 (471)
                      |.|+|.|.|..|....    .+.|.|..+.                                            .||.+.
T Consensus       190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~--------------------------------------------~pp~~~  225 (326)
T PHA02785        190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRI--------------------------------------------IPPTMQ  225 (326)
T ss_pred             eEEEEEEEeccCCEEEeEEEEEEEEEeccC--------------------------------------------CCceec
Confidence            9999999999887643    3455554421                                            245553


Q ss_pred             EcCCeeeeeCCCeEEEEEEecccCC---ceEEEecCCCCCCC
Q psy17058        417 LRPVRQTVKPGDIANIRCSAIGATP---ISIRWQPLQGYFPS  455 (471)
Q Consensus       417 ~~~~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~g~~l~~  455 (471)
                       .|....+..|+.+.|.|.+.|.|+   +.+.|+|||+.|.+
T Consensus       226 -~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        226 -LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             -CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence             455677888999999999999887   48999999998854

>KOG4194|consensus

Probab=99.92  E-value=5.9e-24  Score=196.68  Aligned_cols=241  Identities=22%  Similarity=0.422  Sum_probs=195.5

Q ss_pred             ccccceeeeccceEEEEecCcEEEEEEeeeCCc---cEEEeccchhhh--------------------------------
Q psy17058         34 GEVTQFVSAENHEVTVYEGGDAELKCNTYYAPG---RWMWLNFYSFLS--------------------------------   78 (471)
Q Consensus        34 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~---~~~w~~~~~~~~--------------------------------   78 (471)
                      ..+.+.+...+..+.+..|++++|+|.+..+..   .+.|.+......                                
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence            455667788888999999999999999986433   788986433111                                


Q ss_pred             -------heeeeeee-------------ecCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc
Q psy17058         79 -------LIIICLAY-------------LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI  137 (471)
Q Consensus        79 -------~~~~c~~~-------------~~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~  137 (471)
                             .-|+|.+.             .....|.+...|.+.++..|+.+.|.|. .|+|.|++.|-|++|..++....
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e  659 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE  659 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence                   11577765             2356788888999999999999999999 99999999999998877765332


Q ss_pred             -------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC
Q psy17058        138 -------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP  210 (471)
Q Consensus       138 -------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p  210 (471)
                             ....+.|.||+.+|+|.|+|.|.|..|. .+..+++.|.  +.|.+.+ |..+..+..|+.+.|.|.+ .+.|
T Consensus       660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~--e~p~f~~-PL~~~~V~~get~vlqC~a-~~~~  734 (873)
T KOG4194|consen  660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVL--ETPSFSI-PLEDQLVVVGETLVLQCLA-EGAP  734 (873)
T ss_pred             heeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEe--cCCcccc-cccceEEEecceEEEEEec-CCCC
Confidence                   6778999999999999999999999999 7888888887  4454433 3456688999999999999 5555


Q ss_pred             C-CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeC
Q psy17058        211 S-PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT  279 (471)
Q Consensus       211 ~-~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~  279 (471)
                      . +...|+|+++.+.+..+..+...+..|.+.+...+|.|.|+|...+..+.......+.+...+....+
T Consensus       735 a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~S  804 (873)
T KOG4194|consen  735 ADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMS  804 (873)
T ss_pred             CCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccc
Confidence            5 99999999999888887777776778899999999999999999999998888888887766654433

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.83  E-value=3.1e-19  Score=154.64  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=113.8

Q ss_pred             ceeEEcCCeEEEEEEccCCC-----------CCCeEEEEeCCCCCCc--C-CC--------ceEEeeeceEEEeccCCCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGE-----------PSPTQTWIRPDNDGKF--G-PD--------VEVYQELGVLRFNNIATGD  247 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~-----------p~~~v~W~~~~~~~~~--~-~~--------~~~~~~~~~l~i~~~~~~d  247 (471)
                      ...+.+|+++.|.|.+ .+.           ....+.|+|++...-.  . .+        .+....+..|.|.+++.+|
T Consensus        31 ~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         31 PVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             eEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            4567899999999997 332           3458999998643100  0 00        1111225689999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCccccc
Q psy17058        248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERD  322 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~~~~~  322 (471)
                      +|.|+|.+.|..+.....+.|.|...+       ....+.+|+++.|.|.+.+     .|.|+++|+|++..+.......
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            999999999988777777778774322       1235678999999999863     4578999999999876433322


Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      ......+|.|.+++.+|+|.|+|.|+...
T Consensus       183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        183 LRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            22345689999999999999999999864

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.82  E-value=8.3e-19  Score=151.96  Aligned_cols=151  Identities=22%  Similarity=0.353  Sum_probs=111.8

Q ss_pred             CceeecCCCcEEEEee-CCC-----------CCCeEEEEeCCCCC-C--C-C---------C--cccCcEEEEcCCCCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SND-----------PSATIKWSKDNQEQ-L--P-P---------N--MIAGETLIINGITKAD  151 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~-----------p~~~v~W~~~~~~~-~--~-~---------~--~~~~~~L~i~~v~~~D  151 (471)
                      ..+.+.+|+++.|.|. .+.           ..+.+.|+|++... +  . .         .  ...+..|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            4567999999999999 442           34589999984221 0  0 0         1  0135699999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCC
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGP  227 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~  227 (471)
                      +|.|+|.+.|..+. ......|.|.  ..+       ....+.+|+.++|.|.+..+    .|.++++|+|++..+....
T Consensus       110 sG~Y~C~a~N~~~~-~~~~i~L~V~--~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~  179 (227)
T PHA02826        110 EGIYICTISSGNIC-EESTIRLTFD--SGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD  179 (227)
T ss_pred             CEEEEEEEEECCcc-eEEEEEEEEe--cCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence            99999999997765 4444444442  211       23356789999999998443    4578999999999876666


Q ss_pred             CceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       228 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      ++.+...++.|.|.+++.+|+|.|+|.++...
T Consensus       180 r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        180 RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            66555556689999999999999999998754

>KOG3515|consensus

Probab=99.69  E-value=1.3e-15  Score=148.78  Aligned_cols=407  Identities=15%  Similarity=0.160  Sum_probs=238.6

Q ss_pred             EEEEecCcEEEEEEeee--CCccEEEeccchhhhh---------------------eeeeeeeecC-------------C
Q psy17058         47 VTVYEGGDAELKCNTYY--APGRWMWLNFYSFLSL---------------------IIICLAYLSP-------------Q   90 (471)
Q Consensus        47 ~~v~~g~~~~l~C~~~~--~~~~~~w~~~~~~~~~---------------------~~~c~~~~~~-------------~   90 (471)
                      .-+.+|+.|.|.|.+..  |...++|+...+.+..                     -+.|.+....             .
T Consensus        17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY   96 (741)
T ss_pred             hhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence            38899999999999983  4458999976554430                     1234443221             1


Q ss_pred             CCcEEEcCCceeecCCCcEEEEee---CCCCCCeEEEEeCCCCCCCCC-------------c-ccCcEEEEcCCCCCCCe
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPN-------------M-IAGETLIINGITKADEG  153 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~---~~~p~~~v~W~~~~~~~~~~~-------------~-~~~~~L~i~~v~~~D~G  153 (471)
                      +|.-...-.......+..+.+.|.   .+.|.+.+.|..++.......             . .....|++...+.+|.|
T Consensus        97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g  176 (741)
T KOG3515|consen   97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG  176 (741)
T ss_pred             CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence            111111112345667888999995   677889999999832221111             1 13557888999999999


Q ss_pred             EEEEEEEecCCce--eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE
Q psy17058        154 VYICSIQNAQGNV--FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV  231 (471)
Q Consensus       154 ~Y~C~~~~~~~~~--~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  231 (471)
                      .|+|.+.+.....  ......+.+.................+.+|+.+.|.|.+..++|...++|+++......+.....
T Consensus       177 ~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~  256 (741)
T KOG3515|consen  177 NYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ  256 (741)
T ss_pred             eeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC
Confidence            9999998853221  22233333332222222222223356779999999998888999999999998876444311111


Q ss_pred             Eee----eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeE
Q psy17058        232 YQE----LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTV  306 (471)
Q Consensus       232 ~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i  306 (471)
                      ...    ...+.+..-...+.-...|.+.|   ....+..+.+..++...........+..|++..+.|...+ +|.+.+
T Consensus       257 ~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i  333 (741)
T KOG3515|consen  257 EPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHI  333 (741)
T ss_pred             CCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccccccccCcccccccccccccceeccCCCCccce
Confidence            111    11233333333444567799987   2222233344444432222222335778999999998654 777799


Q ss_pred             EEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEEecCCCCCCCCCCC---
Q psy17058        307 SWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAVEHRPEYGPISPRP---  375 (471)
Q Consensus       307 ~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~~~~---  375 (471)
                      .|+++.........      .........+........|.|.|+|.|.|......  ..+.+.+...|.+.......   
T Consensus       334 ~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~  413 (741)
T KOG3515|consen  334 AWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVA  413 (741)
T ss_pred             eeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceee
Confidence            99996554432211      11111223455666778899999999999875443  34666666666443322211   


Q ss_pred             -------CCccc---cCCC--cc----cCCCC-CC---------Cc-eEEEcCCcce--EEe----------------ee
Q psy17058        376 -------GADIL---PDGD--EY----YRPEP-EE---------GE-YVYAVGSNAS--ISC----------------SV  410 (471)
Q Consensus       376 -------~~~~~---~~~~--~w----~~~~~-~~---------~~-~~~~~~~~~~--y~c----------------~~  410 (471)
                             .+.+.   +...  .|    .+--+ ++         +. .+.++...|.  |.|                +.
T Consensus       414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~  493 (741)
T KOG3515|consen  414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH  493 (741)
T ss_pred             ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence                   11111   1111  44    11111 11         11 4556666666  877                34


Q ss_pred             cCCeeEEcCCeeeeeCCCeEEEEEEecccCCc--eEEEecCCCCCCCc
Q psy17058        411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPI--SIRWQPLQGYFPSH  456 (471)
Q Consensus       411 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~l~~~  456 (471)
                      ..|.+...........|.++.+.|..+..|.-  .+.|.+.|.+..+.
T Consensus       494 ~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~  541 (741)
T KOG3515|consen  494 TSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQ  541 (741)
T ss_pred             cCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCccc
Confidence            45555544444666778889999999988764  78999999887543

>KOG3515|consensus

Probab=99.63  E-value=3.2e-15  Score=146.03  Aligned_cols=311  Identities=20%  Similarity=0.271  Sum_probs=194.0

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      ..|.....+-+..+.+|+.|.|.|.  .+.|...|.|++.+. ....+..  ...+|.......+.-+.|.|.+.|..+.
T Consensus         6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~   84 (741)
T KOG3515|consen    6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTS-GEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM   84 (741)
T ss_pred             CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCc-ccccccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence            3444444444447999999999999  667778999999944 3332222  6678888888888899999999998665


Q ss_pred             eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc-cCCCCCCeEEEEeCCCCCCcCCC----------ceEEee
Q psy17058        166 VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL-EAGEPSPTQTWIRPDNDGKFGPD----------VEVYQE  234 (471)
Q Consensus       166 ~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~-~~~~p~~~v~W~~~~~~~~~~~~----------~~~~~~  234 (471)
                      ..  ...+...+..+|...... .......+..+.+.|.+ ..+.|.+.+.|..+.........          ......
T Consensus        85 ~~--~~~~~l~v~~~pa~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~  161 (741)
T KOG3515|consen   85 PS--RCPMILDVDYPPACLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE  161 (741)
T ss_pred             ce--ecceeeccccCccccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence            22  333344444555433222 22234578899999944 35677889999988654222110          001122


Q ss_pred             eceEEEeccCCCCCeEEEEEEEcCCCc---eEEEEEEEEEeCCc-eeeCCCc-cEEecCCCcEEEEEEEee-cCCCeEEE
Q psy17058        235 LGVLRFNNIATGDEGKYTCIAENSAGK---EVMNAYIHVLTLPA-VTITPSE-YVSVRPGEPLTLECEATG-RPMPTVSW  308 (471)
Q Consensus       235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~p~-~~~~~~~-~~~~~~g~~v~l~C~~~g-~p~~~i~W  308 (471)
                      .+.+.+......+.|.|+|.+.+....   ......+.+..... +.+.... .....+|+.+.|.|.+.+ +|.+.+.|
T Consensus       162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence            456788888899999999999985332   33334444443222 2222222 246789999999998765 88889999


Q ss_pred             EeCCccCCCcccccc----cCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCC
Q psy17058        309 VKYIAPFDRNLERDE----LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD  384 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~  384 (471)
                      +++............    ......+.+..-..++.-...|.+.|   -..+...+.+..++                  
T Consensus       242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~------------------  300 (741)
T KOG3515|consen  242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKP------------------  300 (741)
T ss_pred             ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeeccccc------------------
Confidence            998877654311011    11122333333333344467799998   22233344444442                  


Q ss_pred             cccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEec-ccCCceEEEecCCCCC
Q psy17058        385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAI-GATPISIRWQPLQGYF  453 (471)
Q Consensus       385 ~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~l  453 (471)
                                                  -...+.+....+..|+...+.|... .+|.+.+.|+|+....
T Consensus       301 ----------------------------~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~  342 (741)
T KOG3515|consen  301 ----------------------------TAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMP  342 (741)
T ss_pred             ----------------------------ccccccCcccccccccccccceeccCCCCccceeeeccCccc
Confidence                                        1222333345577899999998876 6788899999976554

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.62  E-value=6.9e-15  Score=110.49  Aligned_cols=85  Identities=24%  Similarity=0.429  Sum_probs=74.4

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ....+..|+.+.|.|.+.|.|++++.|+|++..+....  ........+.|+|.++..+|+|.|+|.|.|..|....++.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~   87 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN   87 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence            45788999999999999999999999999999886432  2223345688999999999999999999999999999999


Q ss_pred             EEEecCC
Q psy17058        360 VAVEHRP  366 (471)
Q Consensus       360 l~V~~~p  366 (471)
                      |.|.++|
T Consensus        88 l~V~~~P   94 (98)
T cd05762          88 LTVVDKP   94 (98)
T ss_pred             EEEecCC
Confidence            9999887

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=1.7e-14  Score=106.27  Aligned_cols=88  Identities=28%  Similarity=0.502  Sum_probs=72.5

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +|.+...+. +..+.+|+.+.|.|.+.|+|.|.++|++++..+.....  .......|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~p~i~~~~~-~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851           1 PADINVKFK-DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISMSGAVLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             CCceEEccc-cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--EecCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            355555553 56788999999999999999999999999887754332  122356899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy17058        353 TEEKVITVAVE  363 (471)
Q Consensus       353 ~~~~~~~l~V~  363 (471)
                      ..+..+.|.|+
T Consensus        78 ~~~~~~~l~V~   88 (88)
T cd05851          78 KDKHQARVYVQ   88 (88)
T ss_pred             ceEEEEEEEEC
Confidence            99999988874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.58  E-value=2.7e-14  Score=105.13  Aligned_cols=83  Identities=31%  Similarity=0.546  Sum_probs=70.6

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ||.|.+.+.+..+.+|+.+.|.|. .+.|.+.++|+|+ +..+.....   .+..|.|.+++.+|+|.|+|.|.|..|. 
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-   78 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKI-LEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-   78 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEEC-CcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-
Confidence            588999999999999999999999 9999999999999 555544322   4568999999999999999999999998 


Q ss_pred             eeeeEEEEE
Q psy17058        167 FQDYASIQV  175 (471)
Q Consensus       167 ~~~~~~l~v  175 (471)
                      ....+.|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd05851          79 DKHQARVYV   87 (88)
T ss_pred             eEEEEEEEE
Confidence            666666655

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.57  E-value=2.8e-14  Score=107.26  Aligned_cols=81  Identities=22%  Similarity=0.347  Sum_probs=68.5

Q ss_pred             cEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCccccccc-------CceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        283 YVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDEL-------TSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+.+.+|+++.|.|.+.| .|+|.+.|+|+|..+.........       ...++|.|..+..+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            467889999999999999 888999999999988743221111       135789999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy17058        355 EKVITVAVE  363 (471)
Q Consensus       355 ~~~~~l~V~  363 (471)
                      +.++.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999999885

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.55  E-value=5.3e-14  Score=102.93  Aligned_cols=80  Identities=24%  Similarity=0.454  Sum_probs=67.7

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc---ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN---LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...   .........+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            457889999999999999999999999999888632   22222234678999999999999999999999999999888


Q ss_pred             EEE
Q psy17058        360 VAV  362 (471)
Q Consensus       360 l~V  362 (471)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.55  E-value=2.4e-14  Score=101.91  Aligned_cols=74  Identities=28%  Similarity=0.530  Sum_probs=63.3

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +|+++.|.|.+.|+|.|.+.|++++..+..... ......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRR-HLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCC-eEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            589999999999999999999999987754322 12234568999999999999999999999999999988875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=1.4e-13  Score=102.20  Aligned_cols=84  Identities=18%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .++.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+.....  .........|.|.++..+|.|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            344456689999999999999999999999999987753321  122345678999999999999999999999999999


Q ss_pred             EEEEEE
Q psy17058        357 VITVAV  362 (471)
Q Consensus       357 ~~~l~V  362 (471)
                      ++.|.|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            988865

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.52  E-value=1.8e-13  Score=101.18  Aligned_cols=80  Identities=29%  Similarity=0.477  Sum_probs=67.7

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+......  ......|.|.+++.+|+|.|+|.|.|..|..+.+..|.
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (88)
T cd04968           9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY   86 (88)
T ss_pred             CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE--EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence            4567889999999999999999999999988765433221  23567899999999999999999999999999999888


Q ss_pred             Ee
Q psy17058        362 VE  363 (471)
Q Consensus       362 V~  363 (471)
                      |+
T Consensus        87 V~   88 (88)
T cd04968          87 VQ   88 (88)
T ss_pred             EC
Confidence            74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.52  E-value=1.5e-13  Score=102.49  Aligned_cols=81  Identities=32%  Similarity=0.464  Sum_probs=67.2

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--cccc-CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDEL-TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ..+.+.+|+++.|.|.+.|.|.|++.|++++..+.....  .... ....+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            346788999999999999999999999999988764321  1111 2346899999999999999999999999999988


Q ss_pred             EEEE
Q psy17058        359 TVAV  362 (471)
Q Consensus       359 ~l~V  362 (471)
                      .|.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            8765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.52  E-value=8.4e-14  Score=95.60  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +.|.|.+.|+|.|.+.|+|+|..+...      ...+.|.|.++..+|+|.|+|.|+|..|..++++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999888532      245699999999999999999999999988877777653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=1.4e-13  Score=103.44  Aligned_cols=82  Identities=30%  Similarity=0.505  Sum_probs=68.8

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc-ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN-LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      +..+..|+++.|.|.+.|.|.|.+.|++++..+... .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            347889999999999999999999999999887643 2212223456799999999999999999999999999999998


Q ss_pred             Eec
Q psy17058        362 VEH  364 (471)
Q Consensus       362 V~~  364 (471)
                      |..
T Consensus        92 V~~   94 (95)
T cd05730          92 VFA   94 (95)
T ss_pred             EEe
Confidence            864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.52  E-value=6.8e-14  Score=98.66  Aligned_cols=73  Identities=23%  Similarity=0.462  Sum_probs=62.0

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+.+.|.|.+.|.|.|.+.|+|++..+....+ .....+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r-~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSR-ISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCC-EEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999887654322 22334568999999999999999999999999999988865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.51  E-value=1.5e-13  Score=101.17  Aligned_cols=78  Identities=23%  Similarity=0.391  Sum_probs=65.3

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      |+.+.|.|.+.|.|++.+.|++++..+.......       .....++|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            7889999999999999999999998774321100       112337899999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            99876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.51  E-value=1.9e-13  Score=102.94  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccc--------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE--------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|++.++........        ....++|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            35788899999999999999999999999999874432111        1234789999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy17058        355 EKVITVAVE  363 (471)
Q Consensus       355 ~~~~~l~V~  363 (471)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999988875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=1.4e-13  Score=98.51  Aligned_cols=74  Identities=27%  Similarity=0.493  Sum_probs=62.2

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+++.|.|.+.|.|.|+++|++++..+...... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            788999999999999999999999877543211 12234568999999999999999999999999999998887

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.50  E-value=1.1e-13  Score=97.87  Aligned_cols=71  Identities=25%  Similarity=0.392  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCc-cccc---ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRN-LERD---ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|.+.|+|++..+... .+..   ......+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            479999999999999999999887632 1111   1122348999999999999999999999999999988875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.49  E-value=3.4e-13  Score=101.33  Aligned_cols=87  Identities=18%  Similarity=0.302  Sum_probs=75.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      +....+..|+.+.|.|.+ .|.|.+.+.|+|++..+....++.+..  ..+.|.|.++..+|+|.|+|.+.|..|....+
T Consensus         7 p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~   85 (98)
T cd05762           7 PEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ   85 (98)
T ss_pred             CcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence            346678999999999999 899999999999998876555555542  35679999999999999999999999999999


Q ss_pred             EEEEEEeCCc
Q psy17058        266 AYIHVLTLPA  275 (471)
Q Consensus       266 ~~l~V~~~p~  275 (471)
                      +.|.|...|.
T Consensus        86 ~~l~V~~~P~   95 (98)
T cd05762          86 VNLTVVDKPD   95 (98)
T ss_pred             EEEEEecCCC
Confidence            9999998764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.49  E-value=1.2e-13  Score=97.95  Aligned_cols=71  Identities=28%  Similarity=0.439  Sum_probs=57.6

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccc-cc--c-CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLER-DE--L-TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~--~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|.+.|+|++..+...... ..  . ....+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999887632111 11  1 12237999999999999999999999999999988875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.48  E-value=2.9e-13  Score=99.16  Aligned_cols=79  Identities=28%  Similarity=0.474  Sum_probs=67.6

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .+..+..|+.+.|.|.+.|.|.|.+.|++++..+......  ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728           7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRI--EVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeE--EEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            4568889999999999999999999999999987643321  22456899999999999999999999999999988886


Q ss_pred             E
Q psy17058        362 V  362 (471)
Q Consensus       362 V  362 (471)
                      |
T Consensus        85 V   85 (85)
T cd05728          85 V   85 (85)
T ss_pred             C
Confidence            5

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.47  E-value=2.8e-13  Score=96.73  Aligned_cols=75  Identities=27%  Similarity=0.411  Sum_probs=62.0

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      |+.+.|.|.+.|+|.|+++|++++..+..... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            68899999999999999999999988753211 1112234589999999999999999999999999999999873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.47  E-value=4.5e-13  Score=97.75  Aligned_cols=77  Identities=26%  Similarity=0.408  Sum_probs=63.1

Q ss_pred             CcEEEEEEEeecCCC--eEEEEeCCccCCCcc---c---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        290 EPLTLECEATGRPMP--TVSWVKYIAPFDRNL---E---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       290 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      +++.|.|.+.|.|.|  .+.|++++..+....   .   .......++|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  689999998775321   1   11112457999999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=8.1e-13  Score=99.55  Aligned_cols=89  Identities=24%  Similarity=0.499  Sum_probs=68.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .|.+...+. ...+..|+.+.|.|.+.|.|.|.++|++++..+.....       .......+.|.|.+++.+|+|.|+|
T Consensus         2 ~p~i~~~~~-~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           2 KPKITYVEN-QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CceEEEccC-ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            355554443 23455689999999999999999999998876542211       0112234689999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy17058        346 IGKNSAGTEEKVITVAV  362 (471)
Q Consensus       346 ~a~n~~g~~~~~~~l~V  362 (471)
                      .|.|..|..+.++.|.|
T Consensus        81 ~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          81 TASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEecCCCCeeEEEEEEC
Confidence            99999999999988875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.47  E-value=7.6e-13  Score=97.83  Aligned_cols=84  Identities=32%  Similarity=0.508  Sum_probs=68.7

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      |+.+...|....+.+|+++.|.|. .+.|.+.+.|++++.........  ....|.|.+++.+|+|.|+|.+.|..|. .
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~   79 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-D   79 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-E
Confidence            456777888999999999999999 88999999999985544333221  5679999999999999999999999988 6


Q ss_pred             eeeEEEEE
Q psy17058        168 QDYASIQV  175 (471)
Q Consensus       168 ~~~~~l~v  175 (471)
                      ...+.|.|
T Consensus        80 ~~~~~l~V   87 (88)
T cd04968          80 THQGRIYV   87 (88)
T ss_pred             EEEEEEEE
Confidence            66666655

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.47  E-value=3.4e-13  Score=96.84  Aligned_cols=75  Identities=27%  Similarity=0.424  Sum_probs=63.6

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            788999999999999999999999877543221 233455789999999999999999999999999999998873

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.46  E-value=4.3e-13  Score=94.49  Aligned_cols=71  Identities=28%  Similarity=0.500  Sum_probs=58.5

Q ss_pred             cEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       291 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      ++.|.|.+.|.|.|.++|+|++..+..... ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999987654322 12223456888999999999999999999999999988865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.46  E-value=4.2e-13  Score=95.24  Aligned_cols=73  Identities=26%  Similarity=0.488  Sum_probs=62.1

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... .......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRI-CIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCE-EECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999887543221 2234468999999999999999999999999999988875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.46  E-value=7.9e-13  Score=98.54  Aligned_cols=79  Identities=25%  Similarity=0.432  Sum_probs=63.2

Q ss_pred             EEecCCCcEEEEEEEeecCC-CeEEEEe-CCccCCCcccc----cccCceeEEEEeecCCCCCeEEEEEEEcCC-CceEE
Q psy17058        284 VSVRPGEPLTLECEATGRPM-PTVSWVK-YIAPFDRNLER----DELTSRAVYTIASVRESDAGQYKCIGKNSA-GTEEK  356 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~-~~i~W~~-~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~  356 (471)
                      ..+..|+++.|.|.+.|.|. |.++|++ ++..+......    ......++|.|.+++.+|+|.|+|.|.|.. |..+.
T Consensus        10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~   89 (96)
T cd05865          10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA   89 (96)
T ss_pred             cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence            46888999999999999995 6999998 67665432111    112234789999999999999999999996 88898


Q ss_pred             EEEEEE
Q psy17058        357 VITVAV  362 (471)
Q Consensus       357 ~~~l~V  362 (471)
                      ++.|.|
T Consensus        90 s~~l~v   95 (96)
T cd05865          90 TVNVKI   95 (96)
T ss_pred             EEEEEE
Confidence            888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.45  E-value=9.3e-13  Score=98.17  Aligned_cols=87  Identities=25%  Similarity=0.499  Sum_probs=70.6

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...| ....+.+|+.+.|.|.+.|+|.|.+.|++++..+....  ........++|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            45555444 46789999999999999999999999999988775432  1122334579999999999999999999999


Q ss_pred             CCceEEEEEE
Q psy17058        351 AGTEEKVITV  360 (471)
Q Consensus       351 ~g~~~~~~~l  360 (471)
                      .|..+.++.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9999888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.45  E-value=7.4e-13  Score=96.72  Aligned_cols=79  Identities=24%  Similarity=0.511  Sum_probs=65.7

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +....|+++.|.|.+.|.|.|.+.|++++..+..............|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            3466799999999999999999999999988754333223344578999999999999999999999999988888764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=5.5e-13  Score=93.93  Aligned_cols=71  Identities=38%  Similarity=0.659  Sum_probs=59.8

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +.|.|.+.|+|.|.+.|++++..+..... .......+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            47899999999999999999887654321 223456799999999999999999999999999999988873

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.45  E-value=6.9e-13  Score=97.51  Aligned_cols=79  Identities=25%  Similarity=0.467  Sum_probs=65.7

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+......   ........|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            35778999999999999999999999999887643221   112235679999999999999999999999999999888


Q ss_pred             EE
Q psy17058        361 AV  362 (471)
Q Consensus       361 ~V  362 (471)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.44  E-value=1.2e-12  Score=98.78  Aligned_cols=80  Identities=26%  Similarity=0.491  Sum_probs=65.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      +..+.+|+++.|.|.+.|.|.|.+.|++++..+....       ........+.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            5678899999999999999999999999886554211       111123457899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy17058        356 KVITVAV  362 (471)
Q Consensus       356 ~~~~l~V  362 (471)
                      .++.|.|
T Consensus        90 ~s~~l~v   96 (96)
T cd05732          90 QSMYLEV   96 (96)
T ss_pred             EEEEEeC
Confidence            9888865

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.44  E-value=1.1e-12  Score=98.97  Aligned_cols=81  Identities=23%  Similarity=0.499  Sum_probs=63.7

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCCCc-------ccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .+..+.+|++++|.|.+.|.|.|.+.|++.  +..+...       ..........+|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence            357889999999999999999999999995  3322210       1111112346899999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy17058        353 TEEKVITVAV  362 (471)
Q Consensus       353 ~~~~~~~l~V  362 (471)
                      ....++.|.|
T Consensus        89 ~~~~~~~l~~   98 (98)
T cd05870          89 GHQKSMYLDI   98 (98)
T ss_pred             cceeEEEEeC
Confidence            9999888865

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.44  E-value=6.4e-13  Score=93.41  Aligned_cols=70  Identities=26%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +.|.|.+.|.|.|.+.|+|++..+.....  ......+|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46999999999999999999998865432  23455789999999999999999999999998887777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=5.3e-13  Score=94.95  Aligned_cols=74  Identities=28%  Similarity=0.491  Sum_probs=62.9

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      +|+.+.|.|.+ .+.|.+.++|+|++..+....+..+. ..+.|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL-SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc-cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58999999999 89999999999998876554444333 3678999999999999999999999999888887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.44  E-value=1.2e-12  Score=100.55  Aligned_cols=95  Identities=24%  Similarity=0.364  Sum_probs=71.0

Q ss_pred             eCCceeeCCCccEEe---cCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc-------ccCceeEEEEeecC-CCCC
Q psy17058        272 TLPAVTITPSEYVSV---RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVR-ESDA  340 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~---~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~-~~d~  340 (471)
                      .+|.+...+.....+   ..|..+.|.|.+.|.|.+.+.|++++..+.......       .....+.|.|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            355554444321222   356889999999999999999999998875321100       11224789999997 5899


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      |.|+|.|.|..|....++.|.+..+|
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCCC
Confidence            99999999999999999999998875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.43  E-value=3.7e-12  Score=103.05  Aligned_cols=116  Identities=20%  Similarity=0.324  Sum_probs=86.8

Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCcc
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAP  314 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~  314 (471)
                      .|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+.+.+.. ....+|+.+.|.|.+.|. |. ++|.|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            5899999999999999999998888888899999999998877643 334478999999999984 54 48999999864


Q ss_pred             CCC------cc--------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        315 FDR------NL--------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       315 ~~~------~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ...      ..        ........+.|.+.....++...|+|.|.|....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence            211      10        0111223456667666666677999999986543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.43  E-value=1.2e-12  Score=98.37  Aligned_cols=82  Identities=17%  Similarity=0.271  Sum_probs=67.5

Q ss_pred             CceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCCcCCCceEEee-------eceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGKFGPDVEVYQE-------LGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ....+.+|+++.|.|.+ .+ .|.+.+.|+|+|..+.......+...       .+.|.|..+..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            34567899999999999 66 89999999999988664433332221       46799999999999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy17058        261 KEVMNAYIHVL  271 (471)
Q Consensus       261 ~~~~~~~l~V~  271 (471)
                      ..+..+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            98888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.43  E-value=9.3e-13  Score=96.61  Aligned_cols=77  Identities=23%  Similarity=0.385  Sum_probs=63.4

Q ss_pred             CcEEEEEEEeecCCC--eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        290 EPLTLECEATGRPMP--TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       290 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      +++.|.|.+.|.|.+  .+.|++++..+....      ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999887  679999998775321      111223567899999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.43  E-value=1.2e-12  Score=97.20  Aligned_cols=81  Identities=32%  Similarity=0.460  Sum_probs=66.5

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--cc-ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RD-ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .. ......+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV   88 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence            456889999999999999999999999999887654321  11 112235799999999999999999999999999998


Q ss_pred             EEEE
Q psy17058        359 TVAV  362 (471)
Q Consensus       359 ~l~V  362 (471)
                      .|.|
T Consensus        89 ~v~~   92 (92)
T cd05891          89 TVSV   92 (92)
T ss_pred             EEEC
Confidence            8865

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.43  E-value=1e-12  Score=97.84  Aligned_cols=86  Identities=36%  Similarity=0.659  Sum_probs=72.6

Q ss_pred             eeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       276 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+...  ..........+|.|.++..+|+|.|+|.|.|..|.
T Consensus         3 ~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~   81 (90)
T PF07679_consen    3 FTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE   81 (90)
T ss_dssp             EEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred             EEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence            33333 4678999999999999999999999999999888742  23333447889999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy17058        354 EEKVITVAV  362 (471)
Q Consensus       354 ~~~~~~l~V  362 (471)
                      .+.++.|.|
T Consensus        82 ~~~~~~l~V   90 (90)
T PF07679_consen   82 ATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.43  E-value=8.4e-13  Score=93.07  Aligned_cols=73  Identities=32%  Similarity=0.533  Sum_probs=62.7

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |+.+.|.|.+ .+.|.+.+.|+|++..+....++.+.. ++.|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD-DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC-CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6889999999 789999999999988765555555544 678999999999999999999999999988888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.43  E-value=1.2e-12  Score=93.26  Aligned_cols=72  Identities=33%  Similarity=0.511  Sum_probs=60.6

Q ss_pred             cEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        291 PLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       291 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      .+.|.|.+.|.|.|.+.|++++..+....  ........+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999998874332  2222345678999999999999999999999999999988865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.43  E-value=7.7e-13  Score=92.07  Aligned_cols=68  Identities=28%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|+|.|.+.|+|++.++.....   ......|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~---~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT---FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE---EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            46899999999999999999999865432   223468999999999999999999999998877666554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.42  E-value=9e-13  Score=93.76  Aligned_cols=71  Identities=27%  Similarity=0.416  Sum_probs=57.9

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccc-c---ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLER-D---ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|.+.|+|++..+...... .   ......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999887632111 1   1123347999999999999999999999999999988865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.42  E-value=9.6e-13  Score=94.81  Aligned_cols=77  Identities=21%  Similarity=0.269  Sum_probs=62.6

Q ss_pred             CcEEEEEEEee--cCCCeEEEEeCCccCCCc--cccccc----CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        290 EPLTLECEATG--RPMPTVSWVKYIAPFDRN--LERDEL----TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       290 ~~v~l~C~~~g--~p~~~i~W~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      +++.|.|.+.+  .+++.|.|+++|+.+...  ......    ...+.|.|.+++..|+|.|+|.|.|..+..+.+..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46899999987  446799999999998621  111111    3456899999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.42  E-value=1.8e-12  Score=95.81  Aligned_cols=78  Identities=23%  Similarity=0.361  Sum_probs=64.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVA  361 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  361 (471)
                      ++.+.+|+++.|.|.+.|. .|.+.|++++..+.... ........+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~   89 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN   89 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence            4578899999999999999 89999999998765432 1223345689999999999999999999999986 4467776


Q ss_pred             E
Q psy17058        362 V  362 (471)
Q Consensus       362 V  362 (471)
                      |
T Consensus        90 V   90 (91)
T cd05740          90 V   90 (91)
T ss_pred             e
Confidence            6

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.41  E-value=1.5e-12  Score=92.43  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=56.7

Q ss_pred             EEEEEEeecCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        293 TLECEATGRPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       293 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .|.|.+.|+|.|+++|+|+|..+......       ......+.|.|.++..+|+|.|+|.|+|..|..++++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            37899999999999999999998643221       1123456899999999999999999999999998887764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.41  E-value=8.8e-13  Score=92.33  Aligned_cols=68  Identities=24%  Similarity=0.529  Sum_probs=57.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      +.|.|.+.|.|.|.+.|+|++..+..... ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGK-FHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCC-EEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999999999999999999987754322 123345789999999999999999999999999888776

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.40  E-value=1.9e-12  Score=96.54  Aligned_cols=79  Identities=20%  Similarity=0.468  Sum_probs=65.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc--c-----cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--I-----AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~--~-----~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ||.+...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+....  .     ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            678888899999999999999999 9999999999999 54543321  1     3468999999999999999999999


Q ss_pred             CCceeeeeE
Q psy17058        163 QGNVFQDYA  171 (471)
Q Consensus       163 ~~~~~~~~~  171 (471)
                      .|. .....
T Consensus        82 ~G~-~~~~~   89 (92)
T cd05747          82 EGK-QEAQF   89 (92)
T ss_pred             CCC-EeEEE
Confidence            887 44333

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.40  E-value=2.4e-12  Score=89.66  Aligned_cols=68  Identities=29%  Similarity=0.555  Sum_probs=55.5

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      |+++.|.|.+.|.|.|.+.|++++..+.....  .......|.|.++.  |+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~--~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE--MPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccc--eecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999988754332  12234578888874  7999999999999998887766

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.40  E-value=3.6e-12  Score=95.01  Aligned_cols=83  Identities=23%  Similarity=0.456  Sum_probs=63.6

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCCCC-Cc--c------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQLPP-NM--I------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~~~-~~--~------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .+.+.|....+.+|+++.|.|. .+.|. +.++|++.++..+.. ..  .      ..++|+|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           2 QVDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             cEEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence            3667888889999999999999 88885 699999843654432 11  1      136899999999999999999999


Q ss_pred             cCCceeeeeEEEEE
Q psy17058        162 AQGNVFQDYASIQV  175 (471)
Q Consensus       162 ~~~~~~~~~~~l~v  175 (471)
                      ..+.....++.|.|
T Consensus        82 ~~~g~~~~s~~l~v   95 (96)
T cd05865          82 EDEGESEATVNVKI   95 (96)
T ss_pred             CCCCcEEEEEEEEE
Confidence            87332555555554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.39  E-value=2.2e-12  Score=92.41  Aligned_cols=73  Identities=25%  Similarity=0.469  Sum_probs=57.5

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEEec
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAVEH  364 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~  364 (471)
                      ++|.|.+.|.|.|.+.|+|+|..+..... .........|.|.++..+|+|.|+|.|.|..|...  ..+.|.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d   76 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID   76 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence            57999999999999999999988754321 11223346899999999999999999999999874  456666643

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.2e-12  Score=92.15  Aligned_cols=71  Identities=31%  Similarity=0.520  Sum_probs=56.9

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCC-C--cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFD-R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~-~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|.++|++++.... .  ............|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4689999999999999999986422 1  111112234468999999999999999999999999999998887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=3.1e-12  Score=95.29  Aligned_cols=82  Identities=23%  Similarity=0.511  Sum_probs=67.6

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee---eceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+|++..+....++.+...   ...|.|.+++.+|+|.|+|.+.|..|..+.
T Consensus         8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            345678899999999999 8899999999999987666555555422   347999999999999999999999998888


Q ss_pred             EEEEEE
Q psy17058        265 NAYIHV  270 (471)
Q Consensus       265 ~~~l~V  270 (471)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=1.6e-12  Score=91.11  Aligned_cols=69  Identities=29%  Similarity=0.554  Sum_probs=57.6

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|.+.|++++..+.....  .......|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRA--EILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcE--EEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999876643322  1224568999999999999999999999999998888865

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=3e-12  Score=95.00  Aligned_cols=78  Identities=31%  Similarity=0.426  Sum_probs=63.1

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCC-------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDR-------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      |+.+.|.|.+.|.|.|.+.|++++..+..       ..........+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            68899999999999999999998765310       01111222346799999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |.+..
T Consensus        81 V~~~~   85 (90)
T cd05726          81 VTDVI   85 (90)
T ss_pred             Eeecc
Confidence            98754

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=4.6e-12  Score=95.19  Aligned_cols=82  Identities=27%  Similarity=0.470  Sum_probs=68.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      ...+..|+.+.|.|.+ .+.|.+.+.|++++..+... .++......+.|.|.+++.+|.|.|+|.|.|..|....++.|
T Consensus        12 ~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          12 NATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL   90 (95)
T ss_pred             ceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            3467899999999999 78999999999998775443 333333445679999999999999999999999999888888


Q ss_pred             EEEe
Q psy17058        269 HVLT  272 (471)
Q Consensus       269 ~V~~  272 (471)
                      .|..
T Consensus        91 ~V~~   94 (95)
T cd05730          91 KVFA   94 (95)
T ss_pred             EEEe
Confidence            8864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.39  E-value=1.6e-11  Score=99.36  Aligned_cols=116  Identities=22%  Similarity=0.385  Sum_probs=79.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeC
Q psy17058        141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRP  219 (471)
Q Consensus       141 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~  219 (471)
                      +|+|.+++.+|+|.|.|.+.+..+. ......|.|  ..+|.+.+.+.. ....+|+.++|.|.+.+..|. +.++|+++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v--~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSV--SEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEE--ecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            6999999999999999999887665 444444444  467877766543 234478999999999555565 59999999


Q ss_pred             CCCCCc----CCCc-----e-----EEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        220 DNDGKF----GPDV-----E-----VYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       220 ~~~~~~----~~~~-----~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      +.....    ....     .     .+...+.|.+......+.+.|+|.+.+...
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            864221    0111     0     111134566666666677899999987643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2e-12  Score=92.18  Aligned_cols=73  Identities=23%  Similarity=0.506  Sum_probs=58.9

Q ss_pred             CCcEEEEEEEeecCCCeEEEEe-CCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVK-YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+..... .......+|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR-TLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe-EEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6889999999999999999997 4554433221 22234568999999999999999999999999988888765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.38  E-value=1.9e-12  Score=91.49  Aligned_cols=71  Identities=35%  Similarity=0.609  Sum_probs=58.9

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +.|.|.+.|.|.|.+.|++++..+..... ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRT-KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCce-eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            47899999999999999999877643211 123345689999999999999999999999999999888773

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.38  E-value=3.2e-12  Score=94.23  Aligned_cols=79  Identities=19%  Similarity=0.400  Sum_probs=61.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----c---CcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----A---GETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~---~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      .+.+.|.+..+.+|+++.|.|. .+.|. .+.|+++++..+.....    .   ...|.|.++..+|+|.|+|.|.|..|
T Consensus         2 ~~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G   80 (92)
T cd05866           2 QVSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   80 (92)
T ss_pred             eEEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence            3567788899999999999999 88887 89999865654432221    2   23899999999999999999999988


Q ss_pred             ceeeeeEE
Q psy17058        165 NVFQDYAS  172 (471)
Q Consensus       165 ~~~~~~~~  172 (471)
                      ........
T Consensus        81 ~~~~~~i~   88 (92)
T cd05866          81 QTQEATVV   88 (92)
T ss_pred             cEEEEEEE
Confidence            73333333

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.38  E-value=4.7e-12  Score=94.44  Aligned_cols=73  Identities=25%  Similarity=0.473  Sum_probs=56.5

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceE-EEEEE
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEE-KVITV  360 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l  360 (471)
                      +|+.+.|.|.+.|.|.|+++|++++..+............+.|.|.++. .+|+|.|+|.|.|..|... +.+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            5789999999999999999999999888532211122234678898875 6999999999999999874 34443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.37  E-value=3.4e-12  Score=91.81  Aligned_cols=74  Identities=27%  Similarity=0.433  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+++.|.|.+.|.|.|.+.|++++..+....+  .........|.|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            68899999999999999999999877654322  122334578999999999999999999999998877655544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.37  E-value=3.9e-12  Score=91.59  Aligned_cols=77  Identities=22%  Similarity=0.454  Sum_probs=63.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      ...+.+|+.+.|.|.+.+. .+.+.|+|+|..+.......  .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTR--ITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEE--EeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            4577899999999999986 56899999998886543211  12458999999999999999999999999888877764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.37  E-value=4.8e-12  Score=93.26  Aligned_cols=80  Identities=36%  Similarity=0.593  Sum_probs=63.5

Q ss_pred             cEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy17058        283 YVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITV  360 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  360 (471)
                      ...+.+|+++.|.|.+ .|.|.+.+.|++++..+............+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l   84 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL   84 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence            4678899999999998 78999999999999887643221222335789999999999999999999999986 445555


Q ss_pred             EE
Q psy17058        361 AV  362 (471)
Q Consensus       361 ~V  362 (471)
                      .|
T Consensus        85 ~V   86 (86)
T cd05724          85 SV   86 (86)
T ss_pred             EC
Confidence            43

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.37  E-value=2.8e-12  Score=93.89  Aligned_cols=78  Identities=26%  Similarity=0.461  Sum_probs=63.9

Q ss_pred             EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      ...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+.....   .++.|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~   80 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYAS   80 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEEC-CEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEE
Confidence            44677889999999999999 8999999999999 555543222   5678999999999999999999999887 5555


Q ss_pred             EEEE
Q psy17058        171 ASIQ  174 (471)
Q Consensus       171 ~~l~  174 (471)
                      +.|.
T Consensus        81 ~~l~   84 (85)
T cd05728          81 AELA   84 (85)
T ss_pred             EEEE
Confidence            5444

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.36  E-value=5.9e-12  Score=93.06  Aligned_cols=77  Identities=26%  Similarity=0.500  Sum_probs=60.3

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASI  173 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l  173 (471)
                      +..+.+.+|++++|.|. .+. .+.+.|++++......+..   .+..|+|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            44678999999999999 777 8999999994333333222   456899999999999999999999998755555555


Q ss_pred             EE
Q psy17058        174 QV  175 (471)
Q Consensus       174 ~v  175 (471)
                      .|
T Consensus        89 ~V   90 (91)
T cd05740          89 NV   90 (91)
T ss_pred             Ee
Confidence            54

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=2.3e-12  Score=95.44  Aligned_cols=75  Identities=23%  Similarity=0.478  Sum_probs=58.0

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCc----cCCCc-c----------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIA----PFDRN-L----------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~----~~~~~-~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      |+.+.|.|.+.|.|.|.|+|+|++.    .+... .          ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            6789999999999999999999642    11100 0          0001123458999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy17058        354 EEKVITVAVE  363 (471)
Q Consensus       354 ~~~~~~l~V~  363 (471)
                      ...++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999998873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.36  E-value=6e-12  Score=95.83  Aligned_cols=88  Identities=30%  Similarity=0.603  Sum_probs=63.0

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc----ccccccCcee---EEEEe--ecCCCCCeEEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELTSRA---VYTIA--SVRESDAGQYK  344 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~---~l~i~--~~~~~d~G~Y~  344 (471)
                      |.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...    .........+   .+.+.  .++.+|+|.|+
T Consensus         2 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           2 PRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            5555554 3578899999999999999999999999999887641    1101111112   22222  23689999999


Q ss_pred             EEEEcCCCc-eEEEEEEEE
Q psy17058        345 CIGKNSAGT-EEKVITVAV  362 (471)
Q Consensus       345 C~a~n~~g~-~~~~~~l~V  362 (471)
                      |.|.|..|. .++.+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 567777766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.36  E-value=7.6e-12  Score=93.37  Aligned_cols=73  Identities=26%  Similarity=0.380  Sum_probs=55.8

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE-EEEE
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK-VITV  360 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  360 (471)
                      .|+++.|.|.+.|+|.|.++|+++|..+............+.|.|.++. ..|+|.|+|.|+|..|.... .+.|
T Consensus        18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          18 PEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            3568999999999999999999999887532211122234678888765 69999999999999998743 4544

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.36  E-value=3.5e-12  Score=90.19  Aligned_cols=71  Identities=28%  Similarity=0.535  Sum_probs=58.7

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee-c--eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL-G--VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      +.|.|.+ .+.|.|.+.|+|++..+... .++.+...+ +  +|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            4799999 89999999999999876543 444444322 2  7999999999999999999999999988888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.36  E-value=6.7e-12  Score=89.79  Aligned_cols=74  Identities=27%  Similarity=0.455  Sum_probs=60.8

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |+.++|.|.+ .+.|.+.++|++++..+..... .......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6889999999 7889999999999876543321 122233678999999999999999999999999888888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.35  E-value=5.5e-12  Score=90.79  Aligned_cols=69  Identities=17%  Similarity=0.319  Sum_probs=56.6

Q ss_pred             EEEEEEeecCCCeEEEEeCCccCCCccccc---------ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        293 TLECEATGRPMPTVSWVKYIAPFDRNLERD---------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       293 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .|.|.+.|+|.|+++|+|+|..+.......         .....+.|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            378999999999999999999886432110         123356899999999999999999999999999887765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.35  E-value=9.8e-12  Score=90.92  Aligned_cols=80  Identities=26%  Similarity=0.478  Sum_probs=66.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|+|++..+... .++.+..  ..+.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus         4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            4567899999999999 89999999999999876543 2444432  246799999999999999999999999988887


Q ss_pred             EEEE
Q psy17058        267 YIHV  270 (471)
Q Consensus       267 ~l~V  270 (471)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=5.3e-12  Score=89.68  Aligned_cols=72  Identities=33%  Similarity=0.598  Sum_probs=57.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCc-ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRN-LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE  363 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  363 (471)
                      ++|.|.+.|+|.|.+.|++++..+... .........+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            479999999999999999998877521 111222345679999999999999999999999985 677777763

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.34  E-value=8e-12  Score=92.14  Aligned_cols=79  Identities=23%  Similarity=0.418  Sum_probs=61.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCcccc--cccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRNLER--DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVI  358 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~  358 (471)
                      +..+.+|+++.|.|.+.|.|. .+.|+++ +..+....+.  ........|.|.++..+|+|.|+|.|+|..|.. .+++
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence            467889999999999999998 9999985 5554432221  122334589999999999999999999999986 6667


Q ss_pred             EEEE
Q psy17058        359 TVAV  362 (471)
Q Consensus       359 ~l~V  362 (471)
                      .|.+
T Consensus        88 ~l~~   91 (92)
T cd05866          88 VLEI   91 (92)
T ss_pred             EEEE
Confidence            6655

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.34  E-value=7.8e-12  Score=88.00  Aligned_cols=71  Identities=25%  Similarity=0.476  Sum_probs=59.6

Q ss_pred             eEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      +++|.|.+ .|.|.+.++|+|++..+.....+.+.. .+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVK-EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEe-cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999 889999999999998755555555444 567889999999999999999999999888888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.34  E-value=5.7e-12  Score=89.38  Aligned_cols=73  Identities=32%  Similarity=0.516  Sum_probs=62.4

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |+.+.|.|.+ .+.|.+.++|++++..+....++.+.. .+.|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIWP-DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEECC-CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6889999999 788999999999998765555555444 568999999999999999999999999888887764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=9.6e-12  Score=92.26  Aligned_cols=84  Identities=23%  Similarity=0.347  Sum_probs=66.5

Q ss_pred             cCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE--EeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--YQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       186 ~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      .++....+.+|+.+.|.|.+ .+.|.+.++|++++..+........  ......|.|.++..+|.|.|+|.|.|..|...
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            34445568899999999999 7899999999999986543322211  12245799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy17058        264 MNAYIHV  270 (471)
Q Consensus       264 ~~~~l~V  270 (471)
                      .++.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8887764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.33  E-value=3.9e-12  Score=94.71  Aligned_cols=82  Identities=28%  Similarity=0.581  Sum_probs=67.1

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      |.|...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.+.|..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence            56778889999999999999999 7778999999999 655543222       56789999999999999999999987


Q ss_pred             CceeeeeEEEEE
Q psy17058        164 GNVFQDYASIQV  175 (471)
Q Consensus       164 ~~~~~~~~~l~v  175 (471)
                      |. ......|.|
T Consensus        80 g~-~~~~~~l~V   90 (90)
T PF07679_consen   80 GE-ATASVNLTV   90 (90)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             CE-EEEEEEEEC
Confidence            76 555555443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.32  E-value=1e-11  Score=92.26  Aligned_cols=80  Identities=25%  Similarity=0.473  Sum_probs=60.6

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC--Ccc------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP--NMI------AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~--~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+.+.|....+.+|+++.|.|. .+.|. .+.|++.++..+..  +..      ..++|+|.+++.+|+|.|+|.|.|..
T Consensus         2 ~v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           2 QVDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             eEEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            4678889999999999999999 67764 99999854554432  111      23589999999999999999999986


Q ss_pred             CceeeeeEEE
Q psy17058        164 GNVFQDYASI  173 (471)
Q Consensus       164 ~~~~~~~~~l  173 (471)
                      |.....+..|
T Consensus        81 g~~~~~sv~l   90 (92)
T cd04977          81 GTESEATVNL   90 (92)
T ss_pred             CCcceeEEEE
Confidence            5534444433

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.32  E-value=1.7e-11  Score=87.97  Aligned_cols=73  Identities=26%  Similarity=0.531  Sum_probs=58.3

Q ss_pred             ccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE-EEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VIT  359 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~  359 (471)
                      .++.+.+|+++.|.|.+.|.|.| +|.|++++..+...    .....+.|.|..+  .|+|.|.|.|+|..|.... .+.
T Consensus         6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~   79 (81)
T cd05749           6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT   79 (81)
T ss_pred             CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence            35788999999999999999999 79999999887541    1234468888887  4789999999999997653 444


Q ss_pred             E
Q psy17058        360 V  360 (471)
Q Consensus       360 l  360 (471)
                      |
T Consensus        80 ~   80 (81)
T cd05749          80 V   80 (81)
T ss_pred             e
Confidence            3

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.32  E-value=1.4e-11  Score=89.96  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             CeEEEEEEccCCCCCC--eEEEEeCCCCCCcCC---CceE---EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        197 DRADIQCVLEAGEPSP--TQTWIRPDNDGKFGP---DVEV---YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       197 ~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~---~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      +.++|.|.+ .+.|.+  .++|++++..+....   ++..   ....+.|.|.+++..|+|.|+|.|.|..|..+.++.|
T Consensus         1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            468999999 777765  689999987754322   2211   1235689999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy17058        269 HVLTLP  274 (471)
Q Consensus       269 ~V~~~p  274 (471)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.32  E-value=8.2e-12  Score=88.48  Aligned_cols=71  Identities=25%  Similarity=0.395  Sum_probs=58.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++|.|.+ .|.|.|.++|+|++..+... .++.+...+   ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            5799999 89999999999998876543 334443322   16999999999999999999999999988888765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.32  E-value=2.1e-11  Score=89.64  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe------eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      |+.++|.|.+ .+.|.+.+.|+|++..+... .++.+..      ..+.|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            7899999999 78899999999998765433 2333321      12579999999999999999999999999999999


Q ss_pred             EEEeCCc
Q psy17058        269 HVLTLPA  275 (471)
Q Consensus       269 ~V~~~p~  275 (471)
                      .|..+|.
T Consensus        80 ~V~~~P~   86 (88)
T cd05735          80 TVQEPPD   86 (88)
T ss_pred             EEeCCCC
Confidence            9987663

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.32  E-value=1.7e-11  Score=92.29  Aligned_cols=82  Identities=21%  Similarity=0.454  Sum_probs=63.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-------cc-----cCcEEEEcCCCCCCCeEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MI-----AGETLIINGITKADEGVYIC  157 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-------~~-----~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      .|.|...+....+..|+.++|.|. .+.|.+.++|+++ +..+...       ..     ..+.|.|.+++.+|+|.|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~-~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTS-TRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEEC-CccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            466777777766777899999999 8889999999998 4443221       10     22589999999999999999


Q ss_pred             EEEecCCceeeeeEEEE
Q psy17058        158 SIQNAQGNVFQDYASIQ  174 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~  174 (471)
                      .|.|..|. ......|.
T Consensus        81 ~A~N~~G~-~~~~~~l~   96 (97)
T cd05869          81 TASNTIGQ-DSQSMYLE   96 (97)
T ss_pred             EEecCCCC-eeEEEEEE
Confidence            99999998 55555544

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.32  E-value=1.7e-11  Score=88.23  Aligned_cols=72  Identities=31%  Similarity=0.543  Sum_probs=56.6

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYAS  172 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~  172 (471)
                      |.+..+.+|+++.|.|. .+. .+.+.|+|+ +..+.....   .+..|.|.+++.+|+|.|+|.+.|..|. ......
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~   76 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFS   76 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEE
Confidence            56778999999999999 554 568999999 666654322   4568999999999999999999998776 433333

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.31  E-value=1.3e-11  Score=88.95  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             CeEEEEEEccC-CCCCCeEEEEeCCCCCCcC---CCceEE---eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        197 DRADIQCVLEA-GEPSPTQTWIRPDNDGKFG---PDVEVY---QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       197 ~~~~L~C~~~~-~~p~~~v~W~~~~~~~~~~---~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      +++.|.|.+.. +.+.+.+.|+++|..+...   .++...   ...+.|.|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46899999943 4557899999999887542   122221   1356899999999999999999999999999999999


Q ss_pred             EEeCC
Q psy17058        270 VLTLP  274 (471)
Q Consensus       270 V~~~p  274 (471)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.31  E-value=1.8e-11  Score=92.36  Aligned_cols=82  Identities=18%  Similarity=0.419  Sum_probs=62.2

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCCCC-------Ccc-----cCcEEEEcCCCCCCCeEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQLPP-------NMI-----AGETLIINGITKADEGVYI  156 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~~~-------~~~-----~~~~L~i~~v~~~D~G~Y~  156 (471)
                      +|.+. .+.+..+.+|++++|.|. .+.|.+.+.|++.. +..+..       +..     ....|+|.+++.+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            35554 367899999999999999 89999999999962 222211       111     2358999999999999999


Q ss_pred             EEEEecCCceeeeeEEEE
Q psy17058        157 CSIQNAQGNVFQDYASIQ  174 (471)
Q Consensus       157 C~~~~~~~~~~~~~~~l~  174 (471)
                      |.|.|..|. ...++.|.
T Consensus        81 C~A~N~~G~-~~~~~~l~   97 (98)
T cd05870          81 CEAASRIGG-HQKSMYLD   97 (98)
T ss_pred             EEEeccCCc-ceeEEEEe
Confidence            999999987 55454443

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.31  E-value=1e-11  Score=86.59  Aligned_cols=70  Identities=24%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +.|.|.+.|.|.|++.|+|++.++....... .....+|.|.+++.+|+|.|+|.|.|..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY-HVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEE-EeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            4689999999999999999998876432211 223458999999999999999999998776666655543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.31  E-value=1.3e-11  Score=92.88  Aligned_cols=81  Identities=12%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE--------eeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY--------QELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ...+..|+.+.|.|.+ .+.|.|.+.|+|++..+.........        ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            4567789999999999 88999999999999886644332221        11357999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy17058        262 EVMNAYIHVL  271 (471)
Q Consensus       262 ~~~~~~l~V~  271 (471)
                      .+.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9888888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.31  E-value=9.1e-12  Score=85.51  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      ++|.|.+ .+.|.|.+.|+|+|..+...      ...+.|.|.++..+|+|.|+|.|+|..|..+.++.+.+.
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKV-AAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEE-EEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4799999 89999999999999875421      125689999999999999999999999987777777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.31  E-value=1.3e-11  Score=88.09  Aligned_cols=75  Identities=23%  Similarity=0.488  Sum_probs=61.6

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      |+.++|.|.+ .+.|.++++|+|++..+..... ......++.|.|.+++..|+|.|+|.|+|..|....++.|.|+
T Consensus         1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            6789999999 8999999999999887643322 1122235689999999999999999999999999999988873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.31  E-value=1e-11  Score=92.12  Aligned_cols=74  Identities=22%  Similarity=0.434  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCC----ccCCCcc--cc---------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYI----APFDRNL--ER---------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~----~~~~~~~--~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      |+++.|.|.+.|.|.|.++|++++    ..+....  ..         ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            688999999999999999999853    2221110  00         00112368999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy17058        354 EEKVITVAV  362 (471)
Q Consensus       354 ~~~~~~l~V  362 (471)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999998887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=1.7e-11  Score=90.28  Aligned_cols=76  Identities=29%  Similarity=0.512  Sum_probs=59.9

Q ss_pred             cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCC-Cc--c--cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPP-NM--I--AGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~-~~--~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      .|....+.+|+++.|.|.  .+.|.+.+.|+++ +..+.. ..  .  ..+.|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKD-GQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEEC-CEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            467888999999999998  5788999999998 544433 11  1  45789999999999999999999998874444


Q ss_pred             eEEE
Q psy17058        170 YASI  173 (471)
Q Consensus       170 ~~~l  173 (471)
                      .+.+
T Consensus        81 ~~~l   84 (86)
T cd05724          81 AARL   84 (86)
T ss_pred             eEEE
Confidence            4443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.30  E-value=2.2e-11  Score=89.46  Aligned_cols=79  Identities=24%  Similarity=0.482  Sum_probs=64.0

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+....+.   ........|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            356789999999999 78899999999998875543322   22223457999999999999999999999999888888


Q ss_pred             EEE
Q psy17058        268 IHV  270 (471)
Q Consensus       268 l~V  270 (471)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.30  E-value=2.1e-11  Score=87.41  Aligned_cols=74  Identities=30%  Similarity=0.473  Sum_probs=61.6

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |+.++|.|.+ .+.|.+.+.|++++..+...... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7889999999 88999999999998765443322 23334678999999999999999999999999988888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.30  E-value=1.8e-11  Score=87.67  Aligned_cols=73  Identities=33%  Similarity=0.639  Sum_probs=60.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      +.|.|.+.|.|.|.+.|+|++..+....  ..........|.|.++..+|.|.|+|.|.|..|..+.++.|.|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            3689999999999999999988775331  112233445799999999999999999999999999999998864

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.29  E-value=1.8e-11  Score=87.84  Aligned_cols=74  Identities=19%  Similarity=0.388  Sum_probs=58.6

Q ss_pred             EEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCC-cccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPN-MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      ...|.++.+.+|+++.|.|. .+.|.+ .|.|+++ +..+... ....+.|.|..+  .|+|.|.|.|.|..|...+..+
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~-g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG-GSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC-CEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence            45678899999999999999 999999 7999999 6555431 124578999887  4889999999999987443333

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.29  E-value=3.8e-11  Score=89.58  Aligned_cols=81  Identities=27%  Similarity=0.469  Sum_probs=61.7

Q ss_pred             CcEEEcCCceeecCC---CcEEEEee-CCCCCCeEEEEeCCCCCCCCCc--c---cCcEEEEcCCC-CCCCeEEEEEEEe
Q psy17058         92 NEVQVTPRQQSAPEG---SQVTIECK-SNDPSATIKWSKDNQEQLPPNM--I---AGETLIINGIT-KADEGVYICSIQN  161 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G---~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~--~---~~~~L~i~~v~-~~D~G~Y~C~~~~  161 (471)
                      |.+..+|.++.+.+|   +++.|.|. .+.|.+.++|+++ +..+....  .   .++.|.|.++. ..|+|.|+|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN-GTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC-CEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence            566777888877666   57999999 8999999999999 65554211  1   45789998865 5999999999999


Q ss_pred             cCCceeeeeEEE
Q psy17058        162 AQGNVFQDYASI  173 (471)
Q Consensus       162 ~~~~~~~~~~~l  173 (471)
                      ..|...+..+.|
T Consensus        81 ~~G~~~s~~a~l   92 (94)
T cd05850          81 RCGTVVSREANL   92 (94)
T ss_pred             CcCcEEEEEEEE
Confidence            999744444433

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.29  E-value=2.6e-11  Score=91.02  Aligned_cols=80  Identities=26%  Similarity=0.523  Sum_probs=61.5

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeec-----CCCCCeEEEEEEEcC-CCce-
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASV-----RESDAGQYKCIGKNS-AGTE-  354 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~-  354 (471)
                      ...+.+|+++.|.|.+.|.|.|.+.|+|++..+..... .......+.+.|.++     ..+|.|.|+|.|.|. .|.. 
T Consensus         8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~   87 (95)
T cd05722           8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV   87 (95)
T ss_pred             CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence            45677899999999999999999999999988764321 112223455777766     588999999999999 9987 


Q ss_pred             EEEEEEEE
Q psy17058        355 EKVITVAV  362 (471)
Q Consensus       355 ~~~~~l~V  362 (471)
                      ++.+.|.|
T Consensus        88 s~~~~l~v   95 (95)
T cd05722          88 SRTARLTV   95 (95)
T ss_pred             EeeeEEeC
Confidence            55676654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.29  E-value=1.3e-11  Score=91.69  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=63.7

Q ss_pred             cEEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        283 YVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|++..+...  ...........|.|.++..+|+|.|+|.++|..|..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            346778999999999998     688899999998764321  1111122357899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy17058        356 KVITVAV  362 (471)
Q Consensus       356 ~~~~l~V  362 (471)
                      ..+.|.|
T Consensus        88 ~~~~L~v   94 (94)
T cd05756          88 VSISLTV   94 (94)
T ss_pred             EEEEEEC
Confidence            8888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.29  E-value=3.8e-11  Score=87.41  Aligned_cols=75  Identities=23%  Similarity=0.428  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC--ceEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITV  360 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l  360 (471)
                      |+++.|.|.+.+.|.+.+.|++.++......      ........++|.|.+++.+|+|.|+|.|.|..+  ..++++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998776432211      111122467899999999999999999999876  67788888


Q ss_pred             EEe
Q psy17058        361 AVE  363 (471)
Q Consensus       361 ~V~  363 (471)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            875

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=1.7e-11  Score=89.12  Aligned_cols=74  Identities=30%  Similarity=0.551  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCC-----Ccc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFD-----RNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~-----~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      |+.+.|.|.+.|.|.|.+.|++++..-.     ...  ..........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7889999999999999999999742111     000  001122346899999999999999999999999999998887


Q ss_pred             E
Q psy17058        362 V  362 (471)
Q Consensus       362 V  362 (471)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.29  E-value=2.4e-11  Score=88.83  Aligned_cols=75  Identities=19%  Similarity=0.316  Sum_probs=60.2

Q ss_pred             CCcEEEEEEEeec--CCCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        289 GEPLTLECEATGR--PMPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       289 g~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      |+.+.|.|.+.|.  |.+.+.|.+++..+.....       .......++|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  7889999988765532211       011234578999999999999999999999999999888


Q ss_pred             EEEe
Q psy17058        360 VAVE  363 (471)
Q Consensus       360 l~V~  363 (471)
                      |.|.
T Consensus        81 v~v~   84 (84)
T cd05742          81 VNIH   84 (84)
T ss_pred             EEEC
Confidence            8763

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.28  E-value=2.8e-11  Score=89.89  Aligned_cols=82  Identities=24%  Similarity=0.497  Sum_probs=66.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee---eceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.....   ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus         8 p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            345678899999999998 7889999999999887655544433221   237999999999999999999999999888


Q ss_pred             EEEEEE
Q psy17058        265 NAYIHV  270 (471)
Q Consensus       265 ~~~l~V  270 (471)
                      ++.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            877754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.28  E-value=3.1e-11  Score=90.94  Aligned_cols=81  Identities=22%  Similarity=0.442  Sum_probs=62.4

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-------cc-----cCcEEEEcCCCCCCCeEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MI-----AGETLIINGITKADEGVYIC  157 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-------~~-----~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      +|.|. .+.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+...       ..     ....|+|.+++.+|+|.|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRA-TRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC   79 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEEC-CcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence            45664 455788999999999999 8889999999998 4433221       11     23589999999999999999


Q ss_pred             EEEecCCceeeeeEEEE
Q psy17058        158 SIQNAQGNVFQDYASIQ  174 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~  174 (471)
                      .|.|..|. ...++.|.
T Consensus        80 ~a~N~~G~-~~~s~~l~   95 (96)
T cd05732          80 EASNRIGG-DQQSMYLE   95 (96)
T ss_pred             EEEeCCCC-cEEEEEEe
Confidence            99999988 55444443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.28  E-value=4.8e-11  Score=88.56  Aligned_cols=80  Identities=29%  Similarity=0.506  Sum_probs=60.0

Q ss_pred             CcEEEcCCceeecCCC---cEEEEee-CCCCCCeEEEEeCCCCCCCC-Ccc---cCcEEEEcCCC-CCCCeEEEEEEEec
Q psy17058         92 NEVQVTPRQQSAPEGS---QVTIECK-SNDPSATIKWSKDNQEQLPP-NMI---AGETLIINGIT-KADEGVYICSIQNA  162 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~---~v~l~C~-~~~p~~~v~W~~~~~~~~~~-~~~---~~~~L~i~~v~-~~D~G~Y~C~~~~~  162 (471)
                      |.|..+|....+.++.   .+.|.|. .+.|.+.++|+|+ +..+.. ...   .++.|.|.++. .+|+|.|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~-~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   80 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKN-NLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI   80 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEEC-CEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence            5666677776665544   7999999 9999999999999 544432 111   56789999985 68999999999999


Q ss_pred             CCceeeeeEE
Q psy17058        163 QGNVFQDYAS  172 (471)
Q Consensus       163 ~~~~~~~~~~  172 (471)
                      .|...+..+.
T Consensus        81 ~G~~~s~~a~   90 (93)
T cd05849          81 YGKVRSREAT   90 (93)
T ss_pred             cceEEEccEE
Confidence            9874443333

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.28  E-value=1.8e-11  Score=87.51  Aligned_cols=68  Identities=25%  Similarity=0.455  Sum_probs=55.6

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      +.|.|.+.| .|.|.+.|++++..+.....     .........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 99999999999988764322     112234578999999999999999999999999887764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.27  E-value=3.9e-11  Score=89.47  Aligned_cols=76  Identities=21%  Similarity=0.477  Sum_probs=59.0

Q ss_pred             CcEEEcCCceeec---CCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc----c-cCcEEEEcCCC-CCCCeEEEEEEEe
Q psy17058         92 NEVQVTPRQQSAP---EGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM----I-AGETLIINGIT-KADEGVYICSIQN  161 (471)
Q Consensus        92 ~~v~~~p~~~~v~---~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~----~-~~~~L~i~~v~-~~D~G~Y~C~~~~  161 (471)
                      |.|...|.++.+.   +|+++.|.|. .+.|.+.++|+|+ +..+....    . .++.|.|.++. .+|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN-GTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN   80 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC-CeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence            5566677776554   4789999999 9999999999999 55554211    1 55789999985 6999999999999


Q ss_pred             cCCceee
Q psy17058        162 AQGNVFQ  168 (471)
Q Consensus       162 ~~~~~~~  168 (471)
                      ..|...+
T Consensus        81 ~~G~~~S   87 (94)
T cd05848          81 SIGSILS   87 (94)
T ss_pred             CCCeEEe
Confidence            9987333

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.27  E-value=3.6e-11  Score=91.52  Aligned_cols=84  Identities=27%  Similarity=0.555  Sum_probs=62.4

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-----cc----cCcEE---EE--cCCCCCCCeEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-----MI----AGETL---II--NGITKADEGVY  155 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-----~~----~~~~L---~i--~~v~~~D~G~Y  155 (471)
                      ||.|...|.+..+.+|+++.|.|. .+.|.+.+.|+|+ +..+...     ..    ..+.+   .+  ..++.+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN-GQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC-CEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            578888999999999999999999 8899999999999 5544331     10    22222   22  23478999999


Q ss_pred             EEEEEecCCceeeeeEEEEE
Q psy17058        156 ICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v  175 (471)
                      +|.|.|..|...+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            99999999874555555544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.27  E-value=2.8e-11  Score=88.28  Aligned_cols=78  Identities=28%  Similarity=0.458  Sum_probs=62.7

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ....|+.++|.|.+ .+.|.+.+.|++++..+..............|.|.+++.+|+|.|+|.+.|..|..+.++.|.|
T Consensus         5 ~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            45579999999999 7888999999999987654433333333467999999999999999999999998877777654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.27  E-value=4.7e-11  Score=88.70  Aligned_cols=79  Identities=23%  Similarity=0.437  Sum_probs=59.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEe-CCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEcCCC-ceEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVK-YIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKV  357 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~  357 (471)
                      ...+..|+++.|.|.+.|.|. .+.|++ ++..+.....   .......++|+|.+++.+|+|.|+|.|.|..| ....+
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s   87 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT   87 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence            467889999999999999974 999998 4544432111   11223457899999999999999999999965 45667


Q ss_pred             EEEEE
Q psy17058        358 ITVAV  362 (471)
Q Consensus       358 ~~l~V  362 (471)
                      +.|.|
T Consensus        88 v~l~~   92 (92)
T cd04977          88 VNLKI   92 (92)
T ss_pred             EEEEC
Confidence            76654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.27  E-value=4.4e-11  Score=90.25  Aligned_cols=78  Identities=19%  Similarity=0.267  Sum_probs=61.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcc--cccc------cCceeEEEEeecCC-CCCeEEEEEEEcCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNL--ERDE------LTSRAVYTIASVRE-SDAGQYKCIGKNSAG  352 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~--~~~~------~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g  352 (471)
                      ...+.+|+.+.|.|.+.|.|.| .+.|++++..+....  +...      ....++|.|.++.. +|.|.|+|.|.|..|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            4578899999999999999999 699999987765321  1000      12236899999998 458999999999999


Q ss_pred             ceEEEEEE
Q psy17058        353 TEEKVITV  360 (471)
Q Consensus       353 ~~~~~~~l  360 (471)
                      .....+.|
T Consensus        90 ~~~~~~~L   97 (98)
T cd05758          90 SGTAIISL   97 (98)
T ss_pred             cccEEEEe
Confidence            99888776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=1.8e-11  Score=87.28  Aligned_cols=66  Identities=24%  Similarity=0.496  Sum_probs=55.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      |.+.+.|+...+.+|++++|.|. .+.|. ..+.|+++ +..+..   .+..|.|.++ .+|+|.|+|.|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn-g~~l~~---~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN-GKLLET---TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC-CEEeec---cCCeEEEeec-ccCCEEeEEECCCC
Confidence            56888999999999999999999 66564 47999999 655522   4568999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.27  E-value=3.3e-11  Score=84.80  Aligned_cols=70  Identities=27%  Similarity=0.508  Sum_probs=58.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      +.|.|.+ .+.|.+.+.|+|++..+... +.......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIA-EGLPTPEVHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999 89999999999998875433 2333344678999999999999999999999999888887776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.26  E-value=3.2e-11  Score=85.75  Aligned_cols=71  Identities=27%  Similarity=0.432  Sum_probs=57.7

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++|.|.+ .+.|.+.+.|+|++..+... .++.+....   ..|.|.+++.+|+|.|+|.+.|..|..+.++.|.|
T Consensus         1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            4799999 89999999999999876543 344443322   26999999999999999999999999888888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.26  E-value=1.9e-11  Score=85.52  Aligned_cols=68  Identities=25%  Similarity=0.558  Sum_probs=57.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      +.|.|.+ .+.|.+.++|+|++..+....++.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            5799999 789999999999987755555554443 6789999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.25  E-value=3.1e-11  Score=88.46  Aligned_cols=77  Identities=26%  Similarity=0.329  Sum_probs=61.0

Q ss_pred             CeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCC---c---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        197 DRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPD---V---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       197 ~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~---~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      ++++|.|.+ .+.|.+  .+.|++++..+.....   +   ......+.|.|.+++..|+|.|+|.+.|..+..+.++.|
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            468999999 777766  7799999887543321   1   111235689999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy17058        269 HVLTLP  274 (471)
Q Consensus       269 ~V~~~p  274 (471)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.25  E-value=5e-11  Score=88.49  Aligned_cols=71  Identities=25%  Similarity=0.390  Sum_probs=55.2

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE-EEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK-VITV  360 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  360 (471)
                      |..+.|.|.+.|+|.|+++|++++..+...... .....+.|.|.++. .+|+|.|+|.|.|..|.... .+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            457999999999999999999999877432111 12235689999885 68999999999999998744 4544

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.25  E-value=2.2e-11  Score=84.70  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=53.0

Q ss_pred             EEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        109 VTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       109 v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      +.|.|. .+.|.+.+.|+|+ +..+.....  .+..|.|.++..+|+|.|+|.|.|..|. ......+.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~-g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~-~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKN-GQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITK-EEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCc-eeeEEEEEEE
Confidence            468999 9999999999999 666654322  4568999999999999999999999987 5555555553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.25  E-value=7.7e-11  Score=87.38  Aligned_cols=76  Identities=29%  Similarity=0.528  Sum_probs=61.9

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCC--------cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGK--------FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      |+.++|.|.+ .+.|.+.+.|+|++..+.        ...++.+.. .+.|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   78 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSILTKAY   78 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence            6889999999 888999999999876531        122333322 567999999999999999999999999999999


Q ss_pred             EEEEeC
Q psy17058        268 IHVLTL  273 (471)
Q Consensus       268 l~V~~~  273 (471)
                      |.|...
T Consensus        79 l~V~~~   84 (90)
T cd05726          79 LEVTDV   84 (90)
T ss_pred             EEEeec
Confidence            998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.25  E-value=6.3e-11  Score=88.92  Aligned_cols=80  Identities=29%  Similarity=0.527  Sum_probs=61.5

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCC-----CCCCCeEEEEEEEe
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGI-----TKADEGVYICSIQN  161 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v-----~~~D~G~Y~C~~~~  161 (471)
                      +..+|.+..+.+|+++.|.|. .+.|.+.+.|+|+ +..+.....      .++.|.|.++     ...|.|.|+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD-GVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC-CeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            456788889999999999999 8889999999998 555543211      4556777776     68999999999999


Q ss_pred             c-CCceeeeeEEEE
Q psy17058        162 A-QGNVFQDYASIQ  174 (471)
Q Consensus       162 ~-~~~~~~~~~~l~  174 (471)
                      . .|...+..+.|.
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            9 887444444443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.24  E-value=7.1e-11  Score=84.28  Aligned_cols=71  Identities=28%  Similarity=0.532  Sum_probs=57.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCC-Cc--CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDG-KF--GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~-~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++|.|.+ .+.|.+.++|+|++... +.  ..++.....++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4789999 89999999999998642 22  123333344568999999999999999999999999888888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.24  E-value=3.6e-11  Score=84.45  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +.|.|.+ .+.|.+.+.|+|++..+....  ........|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus         1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKV-KAYPPPEIQWYKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999 889999999999988755442  233346789999999999999999999999988777777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.24  E-value=1.2e-10  Score=89.47  Aligned_cols=95  Identities=21%  Similarity=0.362  Sum_probs=69.3

Q ss_pred             cCCeeeecCCCceeEE---cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe------eeceEEEeccC-CCC
Q psy17058        179 EMPRIRIHPNASQTFI---VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ------ELGVLRFNNIA-TGD  247 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~---~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~------~~~~l~i~~~~-~~d  247 (471)
                      .+|.+...+.....+.   .|..++|.|.+ .+.|.+.++|++++..+... .++....      ..+.|.|.++. .+|
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            3455544443222222   46789999999 78999999999998775432 2322111      13579999997 589


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEEeCC
Q psy17058        248 EGKYTCIAENSAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~~~~~~~l~V~~~p  274 (471)
                      .|.|+|.|.|..|.....+.|.+..+|
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            999999999999999999999988766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.23  E-value=7.5e-11  Score=82.61  Aligned_cols=69  Identities=36%  Similarity=0.657  Sum_probs=56.9

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++|.|.+ .+.|.+.+.|+|++..++ ..+.... ....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEV-GGDPVPTVLWRKEDGELP-KGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEEC-ccCCCCEEEEEECCccCC-CCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4799999 889999999999977643 3344444 3678999999999999999999999999888777764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.23  E-value=8.2e-11  Score=87.37  Aligned_cols=80  Identities=25%  Similarity=0.372  Sum_probs=63.1

Q ss_pred             ceeEEcCCeEEEEEEccCC-----CCCCeEEEEeCCCCCCcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        190 SQTFIVGDRADIQCVLEAG-----EPSPTQTWIRPDNDGKFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      ...+.+|+.+.|.|.+ .+     .|.+.++|||++..+...  ....+...++.|.|.++..+|+|.|+|.++|..|..
T Consensus         8 ~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           8 KSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             EEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            3457799999999998 55     688899999998764332  223333346789999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy17058        263 VMNAYIHV  270 (471)
Q Consensus       263 ~~~~~l~V  270 (471)
                      +..+.|.|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            88777764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.23  E-value=6.8e-11  Score=84.14  Aligned_cols=72  Identities=26%  Similarity=0.455  Sum_probs=59.7

Q ss_pred             eEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      .+.|.|.+ .+.|.+.+.|+|++..+....++.+..  ....|.|.++..+|+|.|+|.+.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999 899999999999998765555554433  2457999999999999999999999999888877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.23  E-value=8.9e-11  Score=83.57  Aligned_cols=73  Identities=34%  Similarity=0.676  Sum_probs=57.4

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCC-CCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |+.+.|.|.+ .+.|.+.+.|+++++. +....+.... ..+.|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVY-DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEe-cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6889999999 7889999999975443 2222223333 3678999999999999999999999998887777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.22  E-value=1.1e-10  Score=85.64  Aligned_cols=79  Identities=29%  Similarity=0.516  Sum_probs=64.5

Q ss_pred             eCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        278 ITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       278 ~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +.++....+.+|++++|.|.+.+ .|.+.+.|++++..+....    ....+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            34445567889999999999975 6788999999987654321    234578999999999999999999999999988


Q ss_pred             EEEE
Q psy17058        357 VITV  360 (471)
Q Consensus       357 ~~~l  360 (471)
                      ++.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            8765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.22  E-value=5.6e-11  Score=85.76  Aligned_cols=71  Identities=32%  Similarity=0.507  Sum_probs=53.0

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCC-C------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFD-R------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAV  362 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~-~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  362 (471)
                      ++|.|.+.|+|.|.+.|++++.... .      ..........++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            5799999999999999999754221 0      0111112345789999999999999999999999987 55666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.21  E-value=4.8e-11  Score=85.43  Aligned_cols=65  Identities=28%  Similarity=0.543  Sum_probs=50.7

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRE----SDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +.|.|.+.|+|.|+++|+|++..+...  .........+.|.|..+..    +|+|.|+|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            478999999999999999999887432  1212234467888988754    7899999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.21  E-value=7.9e-11  Score=84.10  Aligned_cols=66  Identities=27%  Similarity=0.542  Sum_probs=49.7

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCC--CcccccccCceeEEEEeecC----CCCCeEEEEEEEcCCCceEEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFD--RNLERDELTSRAVYTIASVR----ESDAGQYKCIGKNSAGTEEKV  357 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~--~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~  357 (471)
                      +.|.|.+.|+|.|.++|+|++..+.  ...........++|.|..+.    .+|+|.|+|.|.|..|.....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4689999999999999999998653  12222223356789998764    247999999999999977543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.21  E-value=8e-11  Score=84.60  Aligned_cols=73  Identities=26%  Similarity=0.423  Sum_probs=58.8

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee--eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      |+.+.|.|.+ .+.|.+.+.|++++..+....++.+...  .+.|.|.++..+|.|.|+|.+.|..|.......+.
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            6889999999 8899999999999877655555444332  35799999999999999999999998876554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.21  E-value=4.7e-11  Score=85.15  Aligned_cols=66  Identities=26%  Similarity=0.609  Sum_probs=53.5

Q ss_pred             ceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        275 AVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       275 ~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .+.+.|. ...+.+|++++|+|.+.+.|.+ .+.|++++..+.        .....|.|.++ .+|+|.|+|.|.|.
T Consensus         2 vv~~~P~-~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPP-WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCC-CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            3444543 4578899999999999988864 799999998762        23568999999 99999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.20  E-value=8.3e-11  Score=83.97  Aligned_cols=65  Identities=25%  Similarity=0.542  Sum_probs=49.6

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRE----SDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +.|.|.+.|.|.|+++|++++..+...  .........++|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            479999999999999999999876422  1112233457788877764    3789999999999998754

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.20  E-value=8.9e-11  Score=84.04  Aligned_cols=72  Identities=25%  Similarity=0.493  Sum_probs=56.1

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCC-CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE--EEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP-DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV--MNAYIHVL  271 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~  271 (471)
                      ++|.|.+ .+.|.+.++|+|++..+.... .+.+....+.|.|.++..+|+|.|.|.+.|..|...  ..++|.|.
T Consensus         1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999 789999999999988754433 333444456899999999999999999999998764  45555553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.19  E-value=1.1e-10  Score=84.68  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=56.9

Q ss_pred             EEEcCCceeecCCCcEEEEeeC--CCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKS--NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~--~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      +.++++...|.+|++++|.|..  +.+...+.|+|+ +..+.. ......|.|.+++.+|+|.|+|.+.+..+...+.
T Consensus         2 ~~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~-~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~   77 (83)
T cd05753           2 LLLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKY-SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE   77 (83)
T ss_pred             eEEECCcceecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccc-cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence            3455666689999999999993  456678999999 544432 1245789999999999999999999988753333

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.18  E-value=1.9e-10  Score=85.52  Aligned_cols=69  Identities=26%  Similarity=0.460  Sum_probs=53.3

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .|+.+.|.|.+.|+|.|+++|++++..+............+.|.|.++. .+|+|.|+|.|.|..|....
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            4567999999999999999999999887422111122334678898876 48999999999999997643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.17  E-value=2.3e-10  Score=84.04  Aligned_cols=79  Identities=32%  Similarity=0.579  Sum_probs=63.9

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+......   ........|.|.++..+|.|.|+|.|.|..|..+.++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            45678999999999999999999999998876532111   112334579999999999999999999999998888887


Q ss_pred             EE
Q psy17058        361 AV  362 (471)
Q Consensus       361 ~V  362 (471)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            64

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.16  E-value=1.2e-10  Score=82.66  Aligned_cols=66  Identities=29%  Similarity=0.519  Sum_probs=52.5

Q ss_pred             EEEEee-CCCCCCeEEEEeCCCCCCCC--C--cc--cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        109 VTIECK-SNDPSATIKWSKDNQEQLPP--N--MI--AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       109 v~l~C~-~~~p~~~v~W~~~~~~~~~~--~--~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      ++|.|. .+.|.+.+.|+|+ +..+..  .  ..  .++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKD-FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEEC-CEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            479999 9999999999999 544431  1  11  46689999999999999999999999875566666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.16  E-value=1.2e-10  Score=82.14  Aligned_cols=70  Identities=24%  Similarity=0.494  Sum_probs=56.7

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++|.|.+ .+.|.+.+.|++++..+... +.........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIA-EGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999 78999999999998764332 2233333568999999999999999999999998888877766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.16  E-value=2.1e-10  Score=79.82  Aligned_cols=68  Identities=26%  Similarity=0.505  Sum_probs=53.7

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      |+.++|.|.+ .+.|.|.|+|+|++..+....+.  ......|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~--~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEM--PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEe-eecCCCEEEEEECCEECCCccce--ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999 89999999999998765433322  2224578888874  7999999999999987777665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.16  E-value=3.2e-10  Score=83.12  Aligned_cols=73  Identities=26%  Similarity=0.542  Sum_probs=58.1

Q ss_pred             CCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCCCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEE
Q psy17058         98 PRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKADEGVYICSIQNAQGNVFQDYAS  172 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~  172 (471)
                      |....+.+|++++|.|. . +.|.+.+.|++++ ..++.... .++.|.|.+++.+|+|.|+|.+.|..|. ....+.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~   83 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG-GGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT-DEATAT   83 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECC-CcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEE
Confidence            55778999999999999 4 4688899999994 43443332 5679999999999999999999998887 444443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.15  E-value=1.9e-10  Score=82.32  Aligned_cols=68  Identities=21%  Similarity=0.384  Sum_probs=53.3

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      +.|.|.+.+ .|.+.+.|++++..+.....      .......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 67789999999988753211      111234578999999999999999999999999887764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.14  E-value=2.6e-10  Score=82.53  Aligned_cols=66  Identities=26%  Similarity=0.483  Sum_probs=53.8

Q ss_pred             cCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC-cc---cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-MI---AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~-~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .|.+..+.+|+++.|.|....+.+.+.|+++ +..+... ..   ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~~~~~i~W~~n-g~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKSNLARVVWKFD-GKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCCCCCeEEEEEC-CEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            4778899999999999994446789999999 6655433 11   56789999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.14  E-value=2.2e-10  Score=81.25  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             EEEEccCCCCCCeEEEEeCCCCCCcCCCceE--E-----eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--Y-----QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       201 L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      |.|.+ .|.|.|+++|+|++..+........  .     ...+.|.|.++...|+|.|+|.|+|..|..+.++.+.
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67888 8999999999999988655443211  1     1245799999999999999999999999888777654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.14  E-value=3.2e-10  Score=81.60  Aligned_cols=70  Identities=26%  Similarity=0.395  Sum_probs=55.2

Q ss_pred             EEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---------eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       200 ~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      .|.|.+ .+.|.|.++|+|+|..+.........         ...+.|.|.+++..|+|.|+|.|.|..|..+.++.|..
T Consensus         2 ~i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            367888 89999999999999876554432221         11346999999999999999999999999888776653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.13  E-value=6.9e-10  Score=82.22  Aligned_cols=79  Identities=20%  Similarity=0.336  Sum_probs=62.4

Q ss_pred             ccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCc----ccc----cccCceeEEEEeecCCCC-CeEEEEEEEcCC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRN----LER----DELTSRAVYTIASVRESD-AGQYKCIGKNSA  351 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~----~~~----~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~  351 (471)
                      ....+.+|+.+.|.|.+.+.|+| .+.|.+++..+...    ...    ......++|.|.++...| .|.|.|.|.|.+
T Consensus         9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~   88 (98)
T cd05898           9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF   88 (98)
T ss_pred             ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence            45688899999999999888887 68898887765432    111    112467899999998766 799999999999


Q ss_pred             CceEEEEEE
Q psy17058        352 GTEEKVITV  360 (471)
Q Consensus       352 g~~~~~~~l  360 (471)
                      |.+...+.|
T Consensus        89 G~d~~~i~L   97 (98)
T cd05898          89 GSGTAIIQL   97 (98)
T ss_pred             ccceEEEEe
Confidence            999988876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.11  E-value=6.7e-10  Score=82.46  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCC--------ccc---ccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR--------NLE---RDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~--------~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++++..+..        ..+   ........+|.|.++..+|+|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            356889999999999999999999999998764310        011   011123579999999999999999999882


Q ss_pred             CCceEEEEEEE
Q psy17058        351 AGTEEKVITVA  361 (471)
Q Consensus       351 ~g~~~~~~~l~  361 (471)
                       -..++...|.
T Consensus        85 -~~~~~~~~~~   94 (95)
T cd05882          85 -PVRTAKATVT   94 (95)
T ss_pred             -ccccEEEEEE
Confidence             2334444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.11  E-value=3.2e-10  Score=79.00  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      +.|.|.+ .+.|.+++.|+|++..+..... .....+..|.|.+++.+|+|.|+|.+.|..........+.
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeE-EEcCCCeEEEEECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            4689999 8999999999999977554322 2223356899999999999999999999766554444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.09  E-value=6.3e-10  Score=82.42  Aligned_cols=74  Identities=28%  Similarity=0.519  Sum_probs=56.2

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCC----CCCCcCCC--ceEEe---------eeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPD--VEVYQ---------ELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      |+.++|.|.+ .+.|.+.++|+|++    ..+.....  ..+..         ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            6889999999 78999999999853    22111111  11111         124799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy17058        261 KEVMNAYIHV  270 (471)
Q Consensus       261 ~~~~~~~l~V  270 (471)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9888888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.09  E-value=6e-10  Score=82.46  Aligned_cols=74  Identities=28%  Similarity=0.524  Sum_probs=56.2

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCC----CCCcCC--CceEE---------eeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDN----DGKFGP--DVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~----~~~~~~--~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      |+.++|.|.+ .+.|.|.++|+|++.    .+....  .....         .....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            6789999999 899999999999642    111111  11111         1134799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy17058        261 KEVMNAYIHV  270 (471)
Q Consensus       261 ~~~~~~~l~V  270 (471)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9888888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.08  E-value=5.5e-10  Score=82.37  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             EEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        284 VSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ..+.+|++..|.|...+     +|.|.+.|+|++.++.......  ...+.|.|.++..+|+|.|+|.|.|..+...-++
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~--~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~   82 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF--VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV   82 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE--ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence            46778999999998754     2567999999999886543321  1667999999999999999999999988775554


Q ss_pred             EEEE
Q psy17058        359 TVAV  362 (471)
Q Consensus       359 ~l~V  362 (471)
                      ...+
T Consensus        83 t~t~   86 (92)
T cd05757          83 TRTI   86 (92)
T ss_pred             EEEE
Confidence            4443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.08  E-value=1e-09  Score=80.15  Aligned_cols=75  Identities=24%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             CCcEEEEEEEeecCC--CeEEEEeCCccCCCcc-----c---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        289 GEPLTLECEATGRPM--PTVSWVKYIAPFDRNL-----E---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       289 g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~-----~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      |+++.|.|.+.+.+.  ..+.|...+.......     .   .......++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999987654  4789998776432111     0   01123467999999999999999999999999988888


Q ss_pred             EEEEe
Q psy17058        359 TVAVE  363 (471)
Q Consensus       359 ~l~V~  363 (471)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.08  E-value=8e-10  Score=79.05  Aligned_cols=72  Identities=29%  Similarity=0.467  Sum_probs=58.4

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +.|.|.+ .+.|.+.+.|+|++..+....  ++.....+..|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689999 789999999999988754432  23333334579999999999999999999999998888888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.08  E-value=1e-09  Score=81.20  Aligned_cols=78  Identities=23%  Similarity=0.408  Sum_probs=56.1

Q ss_pred             cCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC------cc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN------MI-AGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~------~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      .|..+.+.+|+++.|.|....|.+.+.|++++. .+...      .. ....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKSNLASVVWLFQGG-PLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCCCCceEEEEECCc-ccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            355678999999999999333778999999943 33221      11 44569999999999999999998765542333


Q ss_pred             eEEEEE
Q psy17058        170 YASIQV  175 (471)
Q Consensus       170 ~~~l~v  175 (471)
                      ...|.|
T Consensus        81 ~~~l~V   86 (89)
T cd04979          81 TYSLNV   86 (89)
T ss_pred             EEEEEE
Confidence            344433

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.06  E-value=2.3e-09  Score=80.86  Aligned_cols=79  Identities=27%  Similarity=0.455  Sum_probs=61.6

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC--CCceEEee------eceEEEeccCCC-CCeEEEEEEEcC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG--PDVEVYQE------LGVLRFNNIATG-DEGKYTCIAENS  258 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~------~~~l~i~~~~~~-d~G~Y~C~~~~~  258 (471)
                      ....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+...  .++.+...      .+.|.|.++..+ |.|.|+|.|.|.
T Consensus         9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            35567899999999999 788888 69999998765443  34444332      247999999994 489999999999


Q ss_pred             CCceEEEEEE
Q psy17058        259 AGKEVMNAYI  268 (471)
Q Consensus       259 ~~~~~~~~~l  268 (471)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9987776655

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.06  E-value=1.5e-09  Score=78.82  Aligned_cols=74  Identities=32%  Similarity=0.533  Sum_probs=56.3

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCC---CCcCC-C--ce-EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDND---GKFGP-D--VE-VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~---~~~~~-~--~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      |+.++|.|.+ .+.|.+.++|+|++..   ..... .  .. .....+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            6889999999 8899999999997431   11111 0  01 11224679999999999999999999999998888877


Q ss_pred             EE
Q psy17058        269 HV  270 (471)
Q Consensus       269 ~V  270 (471)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            64

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.04  E-value=1.1e-09  Score=80.47  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=59.1

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      ....+.+|+.+.|.|....+.|.+.+.|++++..+.  ...+..+...++.|.|.+++.+|+|.|+|.|+|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            345688999999999998999999999999987532  22333344447899999999999999999999876443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.04  E-value=1.1e-09  Score=78.24  Aligned_cols=69  Identities=22%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce---EE--eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE---VY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +.|.|.+..+.|.+.+.|+|++..+.......   +.  ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            47999994338999999999988766544322   11  12457999999999999999999999998766553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.04  E-value=3e-09  Score=78.61  Aligned_cols=80  Identities=15%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCCCCCeEEEEEEEcCCC-ceEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYTCIAENSAG-KEVMNA  266 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~  266 (471)
                      ...+.+|+.+.|.|.+ .+ |.+.+.|++++..+....  ..++......|.|.+++.+|+|.|.|.+.+..+ ....+.
T Consensus         5 ~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~   82 (89)
T cd04979           5 VVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY   82 (89)
T ss_pred             EEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence            4467899999999998 44 778999999998755432  123333345699999999999999999987644 456667


Q ss_pred             EEEEE
Q psy17058        267 YIHVL  271 (471)
Q Consensus       267 ~l~V~  271 (471)
                      .|.|.
T Consensus        83 ~l~V~   87 (89)
T cd04979          83 SLNVL   87 (89)
T ss_pred             EEEEe
Confidence            77764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.03  E-value=1.6e-09  Score=78.12  Aligned_cols=70  Identities=23%  Similarity=0.530  Sum_probs=52.5

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCC--------cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGK--------FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIH  269 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~  269 (471)
                      ++|.|.+ .+.|.+.++|++++....        ...++... .++.|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus         1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL-SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEe-cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            5799999 789999999999754311        12223332 35789999999999999999999998874 5556554


Q ss_pred             E
Q psy17058        270 V  270 (471)
Q Consensus       270 V  270 (471)
                      |
T Consensus        79 ~   79 (79)
T cd05734          79 V   79 (79)
T ss_pred             C
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.03  E-value=1.6e-09  Score=80.49  Aligned_cols=73  Identities=25%  Similarity=0.525  Sum_probs=55.4

Q ss_pred             CcEEEcCCceeecCC---CcEEEEee-CCCCCCeEEEEeCCCCCCCCC--cc---cCcEEEEcCCCC-CCCeEEEEEEEe
Q psy17058         92 NEVQVTPRQQSAPEG---SQVTIECK-SNDPSATIKWSKDNQEQLPPN--MI---AGETLIINGITK-ADEGVYICSIQN  161 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G---~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~--~~---~~~~L~i~~v~~-~D~G~Y~C~~~~  161 (471)
                      |.|.-+|.+..+.+|   +.+.|.|. .+.|.+.++|+++ +..+...  ..   ..+.|.|.++.. +|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~-~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMN-GTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEEC-CEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence            455566666655444   57999999 8889999999998 5555221  11   457899998874 899999999999


Q ss_pred             cCCc
Q psy17058        162 AQGN  165 (471)
Q Consensus       162 ~~~~  165 (471)
                      ..|.
T Consensus        81 ~~G~   84 (91)
T cd04967          81 IVGT   84 (91)
T ss_pred             CCCE
Confidence            9886

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.02  E-value=1.2e-09  Score=81.04  Aligned_cols=64  Identities=25%  Similarity=0.545  Sum_probs=50.6

Q ss_pred             CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------CCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------PPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .++++.+|+++.|.|. .+.|.+.+.|++.++..+         ..+..      ....|.|.+++.+|+|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            5778999999999999 888899999999843211         01111      2468999999999999999999873

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.02  E-value=1.8e-09  Score=79.59  Aligned_cols=77  Identities=17%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             eeEEcCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      +.+.+|+...|.|.....    +|.+.+.|+|++..+..... .+. .++.|.|.++..+|+|.|+|.+.|..+.....+
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~   82 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV   82 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence            457789999999986432    25789999999987654432 222 478899999999999999999999877755544


Q ss_pred             EEE
Q psy17058        267 YIH  269 (471)
Q Consensus       267 ~l~  269 (471)
                      ...
T Consensus        83 t~t   85 (92)
T cd05757          83 TRT   85 (92)
T ss_pred             EEE
Confidence            433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.02  E-value=2.2e-09  Score=78.41  Aligned_cols=74  Identities=20%  Similarity=0.371  Sum_probs=56.9

Q ss_pred             CCeEEEEEEccCCC--CCCeEEEEeCCCCCCcCCC----c---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        196 GDRADIQCVLEAGE--PSPTQTWIRPDNDGKFGPD----V---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       196 g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~~~~~----~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      |+.++|.|.+ .+.  |.+.+.|++++..+.....    .   ......+.|.|.+++..|+|.|+|.+.|..+..+.+.
T Consensus         1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            7899999999 666  7889999988765322110    0   0111245799999999999999999999999888888


Q ss_pred             EEEE
Q psy17058        267 YIHV  270 (471)
Q Consensus       267 ~l~V  270 (471)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            8766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.01  E-value=1.2e-09  Score=80.27  Aligned_cols=66  Identities=20%  Similarity=0.429  Sum_probs=53.5

Q ss_pred             CceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCC--CCCc---c--cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058         99 RQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL--PPNM---I--AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~--~~~~---~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      ....+.+|+.+.|.|.  .+.|.+.+.|+++ +..+  ..+.   .  .++.|.|.+|+.+|+|.|+|.|.|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-CcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            3466999999999998  8889999999999 4432  1111   1  4689999999999999999999987654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.01  E-value=1.9e-09  Score=77.17  Aligned_cols=64  Identities=30%  Similarity=0.547  Sum_probs=49.8

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~  263 (471)
                      ++|.|.+ .+.|.++++|+|++..+....  ++......+.|.|..+..    +|+|.|.|.|.|..|...
T Consensus         1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            4799999 899999999999988754332  333334467899998754    689999999999998743

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.01  E-value=2.1e-09  Score=76.82  Aligned_cols=69  Identities=16%  Similarity=0.389  Sum_probs=52.1

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCC----ceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +.|.|.+..+.|.+.+.|++++..+.....    +.+..  ..+.|.|.++...|+|.|+|.+.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999855578889999999887654321    12111  2457999999999999999999999988766553

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.00  E-value=2.9e-09  Score=79.35  Aligned_cols=75  Identities=19%  Similarity=0.427  Sum_probs=54.0

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCC--------CCCC-CCCcc------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDN--------QEQL-PPNMI------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~--------~~~~-~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +.++.+.+|+++.|.|. .+.|.+.+.|++.+        .... ..+..      ...+|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            46788999999999999 77888999998632        1111 11211      336899999999999999999987


Q ss_pred             cCCceeeeeEEEE
Q psy17058        162 AQGNVFQDYASIQ  174 (471)
Q Consensus       162 ~~~~~~~~~~~l~  174 (471)
                      ...  ....+.|.
T Consensus        84 ~~~--~~~~~~l~   94 (95)
T cd07701          84 MPV--KTSKAYLT   94 (95)
T ss_pred             ecC--ccEEEEEE
Confidence            433  23444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.00  E-value=3.3e-09  Score=75.70  Aligned_cols=65  Identities=31%  Similarity=0.527  Sum_probs=49.3

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~  264 (471)
                      +.|.|.+ .|.|.++++|+|++..+....  ...+...++.|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4799999 899999999999988653332  233333467888887764    3789999999999987543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.00  E-value=4.3e-09  Score=76.16  Aligned_cols=67  Identities=18%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      ...+..|+++.|.|.+ . .+.++++|++++..+....... ....+.|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           5 QRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKY-LLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             eEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            4578899999999998 3 3678999999998866553222 2235679999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.99  E-value=4.1e-09  Score=75.21  Aligned_cols=64  Identities=30%  Similarity=0.526  Sum_probs=49.2

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~  263 (471)
                      +.|.|.+ .|.|.+.++|+|++..+..  ..++.+...++.|.|..+..    +|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999 8999999999999875432  33444444467899987642    469999999999998753

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.99  E-value=4.6e-09  Score=78.29  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--------CCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--------FDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--------~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .++.+.+|+++.|.|.+.+.|.+.+.|++.+..        .....+.   .......+|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            356889999999999999999999999863221        1111111   11234578999999999999999999985


Q ss_pred             CCceEEEEEEEE
Q psy17058        351 AGTEEKVITVAV  362 (471)
Q Consensus       351 ~g~~~~~~~l~V  362 (471)
                      .+ .+....|.|
T Consensus        85 ~~-~~~~~~l~v   95 (95)
T cd07701          85 PV-KTSKAYLTV   95 (95)
T ss_pred             cC-ccEEEEEEC
Confidence            33 366666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.99  E-value=2.1e-09  Score=73.59  Aligned_cols=63  Identities=38%  Similarity=0.736  Sum_probs=52.1

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +|+++.|.|.+.+.|.+.+.|++++..+..  ..........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            488999999988888899999998877662  212334567899999999999999999999765

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.98  E-value=5.7e-09  Score=75.92  Aligned_cols=75  Identities=25%  Similarity=0.466  Sum_probs=54.9

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC----Cce--EEeeeceEEEeccCCCCCeEEEEEEEcCCC--ceEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVE--VYQELGVLRFNNIATGDEGKYTCIAENSAG--KEVMNAY  267 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~----~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~  267 (471)
                      |++++|.|.+ .+.|.+.+.|+++++......    ...  .......|.|.+++.+|+|.|.|.+.|..+  ....++.
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999999 678889999998775421111    111  111246799999999999999999998766  4566666


Q ss_pred             EEEE
Q psy17058        268 IHVL  271 (471)
Q Consensus       268 l~V~  271 (471)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            6664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.98  E-value=2.4e-09  Score=77.62  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .+.+|+.++|.|.+..+.+...+.|+|++..+..      ......|.|.+++.+|+|.|+|.+.+..+.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence            6889999999999855566778999999875432      112567999999999999999999988764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.96  E-value=7.4e-09  Score=75.94  Aligned_cols=78  Identities=28%  Similarity=0.506  Sum_probs=60.1

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      .+..|+.+.|.|.+ .+.|.+.+.|++++..+.........   .....|.|.++..+|.|.|.|.+.|..|..+.++.|
T Consensus         5 ~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           5 AVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             EecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            45689999999999 67888999999998764433222211   113468999999999999999999998887777776


Q ss_pred             EE
Q psy17058        269 HV  270 (471)
Q Consensus       269 ~V  270 (471)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            54

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.95  E-value=7.8e-09  Score=76.23  Aligned_cols=64  Identities=23%  Similarity=0.500  Sum_probs=48.0

Q ss_pred             ceeecCCCcEEEEeeCCCCCCeEEEEeCCCC-CCC------CCcc-cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        100 QQSAPEGSQVTIECKSNDPSATIKWSKDNQE-QLP------PNMI-AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~-~~~------~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+.+.+|+++.|.|..+.|.+.+.||+.... ...      .+.. ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           5 VVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccC
Confidence            4568899999999995578889999985221 111      1111 45679999999999999999998543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.95  E-value=1.3e-08  Score=74.83  Aligned_cols=81  Identities=19%  Similarity=0.305  Sum_probs=66.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCe-EEEEeCCccCCCccc--c-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLE--R-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+.+.+|+++.|.|.+.++|+|+ +.|.+++..+.....  .     ......+.|.+..+..+|+|.|+|.|.|+....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45889999999999999999997 999998876542211  0     112245889999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy17058        355 EKVITVAVE  363 (471)
Q Consensus       355 ~~~~~l~V~  363 (471)
                      +.++.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            999999875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=3.3e-09  Score=77.75  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             CccEEecCCCcEEEEEE-EeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCe-EEEEEEEcCCCce
Q psy17058        281 SEYVSVRPGEPLTLECE-ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG-QYKCIGKNSAGTE  354 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~-~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~  354 (471)
                      ...+.+.+|+.+.|.|. ..|.|.|.+.|++++........+......+.|.|.+++.+|+| .|.|.|.|.....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            34568899999999997 68999999999987654332223334445699999999999999 8999999986443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.91  E-value=9.9e-09  Score=75.98  Aligned_cols=70  Identities=14%  Similarity=0.325  Sum_probs=55.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC----cccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .|.|.+.|. ..|.+|++|+|.|....+...+.|+++ |......    ......|.|.+++.+|+|.|+|.+.+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~~~~~~f~l~k~-g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGPYGAVEYRLYRE-GSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecCCCCCEEEEEEC-CCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            577888885 479999999999996677788999999 4432211    114567999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.90  E-value=1.3e-08  Score=74.98  Aligned_cols=80  Identities=23%  Similarity=0.284  Sum_probs=58.3

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEE-cCCCceEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGK-NSAGTEEKVI  358 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~  358 (471)
                      +...+|+++.|.|.. +.|.+.+.|++...  .....  .........+.|.|.+++.+|+|.|+|.|. |..+.....+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            457789999999997 47888999998432  21110  011112234679999999999999999998 5777777788


Q ss_pred             EEEEec
Q psy17058        359 TVAVEH  364 (471)
Q Consensus       359 ~l~V~~  364 (471)
                      +|.|..
T Consensus        85 ~l~v~~   90 (91)
T cd05871          85 TLHVIE   90 (91)
T ss_pred             EEEEec
Confidence            888764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.90  E-value=4.5e-09  Score=76.10  Aligned_cols=76  Identities=26%  Similarity=0.567  Sum_probs=56.1

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      |.++..+  ..+.+|+.++|.|. .+.|...+.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.+..+...+..
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~---~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~   75 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKN-GSPINS---SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTS   75 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEET-TEEEEE---ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeee-eeeeee---eeeeeeeeeeccccCEEEEEEEEeCCCCeEeee
Confidence            5566555  56899999999999 8778899999998 555442   222388899999999999999998665423333


Q ss_pred             EEE
Q psy17058        171 ASI  173 (471)
Q Consensus       171 ~~l  173 (471)
                      ..|
T Consensus        76 ~~v   78 (80)
T PF13895_consen   76 VNV   78 (80)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            333

...

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.88  E-value=1.1e-08  Score=72.40  Aligned_cols=63  Identities=14%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +.|+|...+ +|+++|.||+++.++.......    .....++|.+.....+|++.|+|+|.|+.+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999865 8999999999999986432111    11244679999999999999999999997754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.88  E-value=7.1e-09  Score=75.03  Aligned_cols=71  Identities=32%  Similarity=0.651  Sum_probs=56.0

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC-ceEEEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKVITVAV  362 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V  362 (471)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+...        ...+.+..+..+|+|.|+|.|.+..+ ..+..+.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            35788999999999999888999999987665411        11277889999999999999999654 4456666655

...

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.88  E-value=1.6e-08  Score=71.53  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=50.3

Q ss_pred             eEEEEEEccCCCCCCeEEEEeCCCCCCcCC----CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .++|.|....+.|++.++||+++..+....    ....+...++|.|.....+|++.|+|+|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            368999998999999999999998764321    1112233557999999999999999999998664

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.85  E-value=1.8e-08  Score=73.92  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-CcCCCceEEeeeceEEEeccCCCCCe-EEEEEEEcCCCc
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEG-KYTCIAENSAGK  261 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~  261 (471)
                      .....+.+|+.+.|.|....+.|.+.|.|++++... ....++.+.. ++.|.|.++...|.| .|.|.|+|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ-NGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC-CceEEEEEEehhhCCCCeEEEEEccccc
Confidence            345678899999999986589999999999876542 2233443333 689999999999999 899999987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.85  E-value=6.2e-09  Score=71.63  Aligned_cols=59  Identities=31%  Similarity=0.584  Sum_probs=44.9

Q ss_pred             CCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCc----eeEEEEeecCCCCCeEEEEEE
Q psy17058        289 GEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTS----RAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       289 g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      |+++.|.|.+ .+.+...+.|++++..............    ...|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 6577779999999888764322111111    123999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.85  E-value=6.5e-08  Score=71.75  Aligned_cols=82  Identities=27%  Similarity=0.457  Sum_probs=61.6

Q ss_pred             cCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC--CCceEEe------eeceEEEeccCCCC-CeEEEEEE
Q psy17058        186 HPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG--PDVEVYQ------ELGVLRFNNIATGD-EGKYTCIA  255 (471)
Q Consensus       186 ~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~------~~~~l~i~~~~~~d-~G~Y~C~~  255 (471)
                      .....+.+.+|+.++|.|.+ .+.|.+ .+.|..++..+...  .++.+..      ..+.|.|.++...| .|.|.|.|
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a   84 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA   84 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence            33455678899999999999 556654 78888877654332  3555543      24579999998867 79999999


Q ss_pred             EcCCCceEEEEEE
Q psy17058        256 ENSAGKEVMNAYI  268 (471)
Q Consensus       256 ~~~~~~~~~~~~l  268 (471)
                      .|..|.....+.|
T Consensus        85 ~N~~G~d~~~i~L   97 (98)
T cd05898          85 WNSFGSGTAIIQL   97 (98)
T ss_pred             EeCCccceEEEEe
Confidence            9999998877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.84  E-value=3.1e-08  Score=74.74  Aligned_cols=72  Identities=15%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC--------------------CCCCcc--cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ--------------------LPPNMI--AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~--------------------~~~~~~--~~~~L~i~~v~~~  150 (471)
                      ++++|.+..+.+|+++.|.|. .......+.|+|+....                    ..++..  .+++|.|.+++.+
T Consensus         1 ~tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~   80 (105)
T cd05774           1 LTIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK   80 (105)
T ss_pred             CeEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence            356677778999999999998 54555689999972211                    001111  5679999999999


Q ss_pred             CCeEEEEEEEecCCc
Q psy17058        151 DEGVYICSIQNAQGN  165 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~  165 (471)
                      |+|.|.|.+.+....
T Consensus        81 D~G~Y~~~v~~~~~~   95 (105)
T cd05774          81 DTGFYTLQTITTNFQ   95 (105)
T ss_pred             cCEEEEEEEEeCCcc
Confidence            999999999987643

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.82  E-value=1.6e-08  Score=74.59  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=52.4

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccC-C---------------Ccccc---cccCceeEEEEeecCCCCCeEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-D---------------RNLER---DELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~-~---------------~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      +.+.+|++|+|.|.+.+.+.+.+.|+++++.. .               .....   ........|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            35678999999999998888999999665321 0               00000   01234467999999999999999


Q ss_pred             EEEEcCCCce
Q psy17058        345 CIGKNSAGTE  354 (471)
Q Consensus       345 C~a~n~~g~~  354 (471)
                      |.|.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999976653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.82  E-value=1.5e-08  Score=74.60  Aligned_cols=79  Identities=19%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             EEecCCCcEEEEEEE-ee----cCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCce---
Q psy17058        284 VSVRPGEPLTLECEA-TG----RPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE---  354 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~-~g----~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---  354 (471)
                      ..+.+|.+..|.|.- .+    ++.++++|+|++.++...... ........|.|.++..+|+|.|+|.|.+..|..   
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            356779999999983 33    356699999999887643221 111234579999999999999999999987644   


Q ss_pred             -EEEEEEEE
Q psy17058        355 -EKVITVAV  362 (471)
Q Consensus       355 -~~~~~l~V  362 (471)
                       ++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence             44555554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.82  E-value=2.5e-08  Score=68.18  Aligned_cols=63  Identities=30%  Similarity=0.619  Sum_probs=50.7

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      +|+.++|.|.+ .+.+.+.+.|++++..+.  ...........|.|.++...|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999997 678888999999887655  2333344466899999999999999999988653

>smart00409 IG Immunoglobulin

Probab=98.81  E-value=7.7e-08  Score=70.32  Aligned_cols=80  Identities=34%  Similarity=0.611  Sum_probs=62.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+...  ...........|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34677899999999999887889999998 6655411  11111222578999999999999999999999888877777


Q ss_pred             EEE
Q psy17058        360 VAV  362 (471)
Q Consensus       360 l~V  362 (471)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            766

>smart00410 IG_like Immunoglobulin like

Probab=98.81  E-value=7.7e-08  Score=70.32  Aligned_cols=80  Identities=34%  Similarity=0.611  Sum_probs=62.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+...  ...........|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34677899999999999887889999998 6655411  11111222578999999999999999999999888877777


Q ss_pred             EEE
Q psy17058        360 VAV  362 (471)
Q Consensus       360 l~V  362 (471)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            766

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.80  E-value=5.6e-08  Score=72.81  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccC---------C-Ccccc-cccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF---------D-RNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~---------~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++.+..+         . ..... ........|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            467899999999999988888899998633221         1 00000 112245689999999999999999999865


Q ss_pred             CceEEEEEEEE
Q psy17058        352 GTEEKVITVAV  362 (471)
Q Consensus       352 g~~~~~~~l~V  362 (471)
                      . .+.++.|.|
T Consensus        86 ~-~~~~~~~~v   95 (95)
T cd05717          86 V-QTAKATVTV   95 (95)
T ss_pred             C-ceEEEEEEC
Confidence            3 455555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.79  E-value=7e-08  Score=71.15  Aligned_cols=80  Identities=23%  Similarity=0.366  Sum_probs=58.3

Q ss_pred             eeEEcCCeEEEEEEccC----------CCCCCeEEEEeCCCCCCcCC-----CceEEeeeceEEEeccCCCCCeEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEA----------GEPSPTQTWIRPDNDGKFGP-----DVEVYQELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~----------~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      ..+.+|+.+.|.|....          ......+.|||++..+....     ..++...+..|.|.++..+|+|.|+|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            45779999999998611          12234899999975543322     1255556788999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy17058        256 ENSAGKEVMNAYIHV  270 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V  270 (471)
                      +|...-...++.|+|
T Consensus        90 rN~t~C~~~~i~l~V  104 (104)
T cd05896          90 RNSTYCMKVSMSLTV  104 (104)
T ss_pred             CCCCcceEEEEEEEC
Confidence            988766666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.79  E-value=4.7e-08  Score=72.03  Aligned_cols=73  Identities=19%  Similarity=0.396  Sum_probs=52.3

Q ss_pred             ceeecCCCcEEEEeeC------------CCCCCeEEEEeCCCCCCCC--------Ccc-cCcEEEEcCCCCCCCeEEEEE
Q psy17058        100 QQSAPEGSQVTIECKS------------NDPSATIKWSKDNQEQLPP--------NMI-AGETLIINGITKADEGVYICS  158 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~~------------~~p~~~v~W~~~~~~~~~~--------~~~-~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ...+.+|+.+.|.|..            ......+.|+|++......        +.. .+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            4678999999999982            2234479999994222211        111 678999999999999999999


Q ss_pred             EEecCCceeeeeEEE
Q psy17058        159 IQNAQGNVFQDYASI  173 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l  173 (471)
                      +.|.... ......|
T Consensus        89 ~rN~t~C-~~~~i~l  102 (104)
T cd05896          89 LRNSTYC-MKVSMSL  102 (104)
T ss_pred             ECCCCcc-eEEEEEE
Confidence            9987755 4333333

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.77  E-value=6.9e-08  Score=72.31  Aligned_cols=65  Identities=26%  Similarity=0.591  Sum_probs=48.6

Q ss_pred             CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC--------CC-CCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ--------LP-PNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~--------~~-~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      +.+.+.+|++++|.|. .+.+.+.+.|++.++..        .. .+..      ....|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            5678999999999999 66677899998632211        11 1111      2357999999999999999999865


Q ss_pred             C
Q psy17058        163 Q  163 (471)
Q Consensus       163 ~  163 (471)
                      .
T Consensus        85 ~   85 (95)
T cd05717          85 P   85 (95)
T ss_pred             C
Confidence            4

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.76  E-value=2.3e-08  Score=68.72  Aligned_cols=60  Identities=25%  Similarity=0.525  Sum_probs=46.1

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec----eEEEeccCCCCCeEEEEEE
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~Y~C~~  255 (471)
                      |++++|.|.+....+...+.|++++................    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            78999999985566778999999998755443333322222    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.75  E-value=6.2e-08  Score=71.29  Aligned_cols=65  Identities=23%  Similarity=0.369  Sum_probs=51.0

Q ss_pred             ceeecCCCcEEEEee--C----CCCCCeEEEEeCCCCCCCCCc------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058        100 QQSAPEGSQVTIECK--S----NDPSATIKWSKDNQEQLPPNM------IAGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~--~----~~p~~~v~W~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      .+.+.+|.+..|.|.  .    ..+.+.++|||+ +..+....      .....|.|.++..+|+|.|+|.+.+..+.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            346888999999997  2    446679999999 55554322      13468999999999999999999997655

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.74  E-value=7.2e-08  Score=70.37  Aligned_cols=76  Identities=17%  Similarity=0.286  Sum_probs=54.8

Q ss_pred             CCeEEEEEEccC-CCCCCeEEEEeCCCCCCcC---CC--ce---EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        196 GDRADIQCVLEA-GEPSPTQTWIRPDNDGKFG---PD--VE---VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       196 g~~~~L~C~~~~-~~p~~~v~W~~~~~~~~~~---~~--~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      |++++|.|.+.. ..+...+.|.++++.....   ..  ..   .....+.|.|.+++..|+|.|+|.+.|..+....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999932 2345688999877642111   11  00   012256799999999999999999999888777777


Q ss_pred             EEEEE
Q psy17058        267 YIHVL  271 (471)
Q Consensus       267 ~l~V~  271 (471)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.73  E-value=6.7e-08  Score=71.55  Aligned_cols=73  Identities=23%  Similarity=0.409  Sum_probs=56.2

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      |.+.+.|  ...+..|++|+|.|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|.+.|.
T Consensus         3 P~L~a~p--~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP--SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC--CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4455554  34678999999999886 6677899999988654321 123455678999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.72  E-value=9.1e-08  Score=68.72  Aligned_cols=75  Identities=20%  Similarity=0.348  Sum_probs=54.1

Q ss_pred             CceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058         99 RQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      ...++.+|+++.|.|....+.+.+.|+++ +..+..+..   ....|.|..++.+|+|.|.|.+.-. |- ....+.+.+
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~n-g~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~-gf-~~~~~~y~l   80 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNLASPVWLFN-GTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE-GF-QQLVASYSL   80 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCCccEEEEEC-CcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC-CC-eEEEEEEEE
Confidence            35679999999999995555789999999 555543222   5556889999999999999998632 22 333444444


Q ss_pred             e
Q psy17058        176 D  176 (471)
Q Consensus       176 ~  176 (471)
                      .
T Consensus        81 ~   81 (85)
T cd05872          81 N   81 (85)
T ss_pred             E
Confidence            3

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA03376 BARF1; Provisional

Probab=98.70  E-value=1.2e-07  Score=76.20  Aligned_cols=118  Identities=17%  Similarity=0.325  Sum_probs=74.0

Q ss_pred             ceeecCCCcEEEEee-C---CCCCCeEEEEeCCC---C---------CCCCCc-----------ccCcEEEEcCCCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-S---NDPSATIKWSKDNQ---E---------QLPPNM-----------IAGETLIINGITKADE  152 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~---~~p~~~v~W~~~~~---~---------~~~~~~-----------~~~~~L~i~~v~~~D~  152 (471)
                      .+.+..|+.+.|.|. .   ..+...|.|+|.+.   .         ......           .++-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            456888999999998 3   33556899999511   0         000000           0455899999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND  222 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~  222 (471)
                      |.|+|.+...... ......+.+.  .+-.+.+..... ....-+..++.|.+ .+.|.|.+.|.-+.+.
T Consensus       100 GtY~C~fQkge~~-~~k~ehLt~V--~~~~Lsv~a~~~-dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~~  164 (221)
T PHA03376        100 GNYLCRMKLGETE-VTKQEHLSVV--KPLTLSVHSERS-QFPDFSVLTVTCTV-NAFPHPHVQWLMPEGV  164 (221)
T ss_pred             ceEEEEEEcCCCc-eeeeeeeeee--ecceEEEEeccc-cCCCCCeeEEEEec-CCcCCchheeccccCC
Confidence            9999999875543 2112222221  111222222111 11225677899996 9999999999987654

>smart00409 IG Immunoglobulin

Probab=98.67  E-value=4.6e-07  Score=66.12  Aligned_cols=80  Identities=28%  Similarity=0.473  Sum_probs=60.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeC-CCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRP-DNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      ...+..|+++.|.|.+ .+.+...+.|+++ +..+....+.......  ..|.|.++...|.|.|.|.+.+..+.....+
T Consensus         3 ~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        3 SVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            3457789999999999 4557889999998 5554434444444432  5799999999999999999998777666556


Q ss_pred             EEEE
Q psy17058        267 YIHV  270 (471)
Q Consensus       267 ~l~V  270 (471)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            6554

>smart00410 IG_like Immunoglobulin like

Probab=98.67  E-value=4.6e-07  Score=66.12  Aligned_cols=80  Identities=28%  Similarity=0.473  Sum_probs=60.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeC-CCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRP-DNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      ...+..|+++.|.|.+ .+.+...+.|+++ +..+....+.......  ..|.|.++...|.|.|.|.+.+..+.....+
T Consensus         3 ~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        3 SVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            3457789999999999 4557889999998 5554434444444432  5799999999999999999998777666556


Q ss_pred             EEEE
Q psy17058        267 YIHV  270 (471)
Q Consensus       267 ~l~V  270 (471)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            6554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PHA03376 BARF1; Provisional

Probab=98.65  E-value=8.3e-07  Score=71.54  Aligned_cols=119  Identities=17%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             EEecCCCcEEEEEEEee---cCCCeEEEEeCCcc----CC------------C---cccccccCceeEEEEeecCCCCCe
Q psy17058        284 VSVRPGEPLTLECEATG---RPMPTVSWVKYIAP----FD------------R---NLERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g---~p~~~i~W~~~~~~----~~------------~---~~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      +.+..|+.+.|+|...-   .+..+|.|+|.+..    +-            .   ........++-+|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            46778999999999752   23337999995431    00            0   011111246778999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCe
Q psy17058        342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR  421 (471)
Q Consensus       342 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~  421 (471)
                      .|+|.+........+.-.|.+..+                                               -.+.+....
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V~~-----------------------------------------------~~Lsv~a~~  133 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVVKP-----------------------------------------------LTLSVHSER  133 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeeeec-----------------------------------------------ceEEEEecc
Confidence            999999876544444334433321                                               112222111


Q ss_pred             eeeeCCCeEEEEEEecccCCceEEEecC
Q psy17058        422 QTVKPGDIANIRCSAIGATPISIRWQPL  449 (471)
Q Consensus       422 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~  449 (471)
                      .....-+...+.|.+-|+|.|.++|.-|
T Consensus       134 ~dFp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        134 SQFPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             ccCCCCCeeEEEEecCCcCCchheeccc
Confidence            1111255678999988999999999876

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.64  E-value=1.6e-07  Score=68.09  Aligned_cols=71  Identities=23%  Similarity=0.427  Sum_probs=50.4

Q ss_pred             cEEEEEEEee-cCCCeEEEEeCCccCCCcccccc-------cCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEE
Q psy17058        291 PLTLECEATG-RPMPTVSWVKYIAPFDRNLERDE-------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITV  360 (471)
Q Consensus       291 ~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l  360 (471)
                      .+.|.|.+.| +|.+.++|++++..+........       ....+.|.|.....+|.|.|+|.|.|.....  ..++.|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            3689999987 68889999999988754321110       1123567888888889999999999986544  444444


Q ss_pred             E
Q psy17058        361 A  361 (471)
Q Consensus       361 ~  361 (471)
                      .
T Consensus        81 ~   81 (82)
T cd05759          81 D   81 (82)
T ss_pred             c
Confidence            3

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.64  E-value=7.2e-05  Score=68.47  Aligned_cols=258  Identities=17%  Similarity=0.265  Sum_probs=144.9

Q ss_pred             eeeeccceEEEEecCcEEEEEEeeeCCccE---EEeccchhhhheeeeeeeecCCCCcEEEcCCceeecCCCcEEEEeeC
Q psy17058         39 FVSAENHEVTVYEGGDAELKCNTYYAPGRW---MWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKS  115 (471)
Q Consensus        39 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~---~w~~~~~~~~~~~~c~~~~~~~~~~v~~~p~~~~v~~G~~v~l~C~~  115 (471)
                      .+.=..+++.+.-|+.+.+.|.+....+.+   .|.........       ..+.|....-......+.+|.++.+.=..
T Consensus        79 ~~~C~~~~vsa~yg~~v~i~C~~~~~~~~~RLeiwr~~~~~~~~-------~~~~P~~~~~~l~n~~a~~~g~l~y~sa~  151 (466)
T PHA03270         79 PFRCKRPDVLARYGSRVQIRCRFPRPTAEFRLQIWRVAAAPSEE-------IRPAPIEPGAVLVNVTAPPGGELVYDSAP  151 (466)
T ss_pred             CEEecCcccccccCccEEEEecccCCCCceEEEEEEeccCCccc-------cCCCCCCcccceeecccCCCceEEeccCc
Confidence            355556789999999999999998765432   33211000000       00000000000012234456666654331


Q ss_pred             CCCCCeEEEEeCCCC-CCCC-----CcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCC
Q psy17058        116 NDPSATIKWSKDNQE-QLPP-----NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA  189 (471)
Q Consensus       116 ~~p~~~v~W~~~~~~-~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~  189 (471)
                      ..-...+.|--.-+. .++.     .......|.|..++...+|.|+-...+..+. ......+.|....+|.+.+.+. 
T Consensus       152 ~~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~-~~~~~~VtV~~yr~Psvsv~~~-  229 (466)
T PHA03270        152 NRTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRP-HRYGTWTRVRMFRRPSLSIRPH-  229 (466)
T ss_pred             cccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCc-eeeeeEEEEEEecCCcccccCC-
Confidence            112346777533111 1111     0114457999999999999999998776665 4445557777667788777654 


Q ss_pred             ceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCce---EEeeeceEEEeccCCCCC------eEEEEEEEcC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVE---VYQELGVLRFNNIATGDE------GKYTCIAENS  258 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~------G~Y~C~~~~~  258 (471)
                        .+.+|+...-.|.+.+.+|.  ..++|++|+..+.......   ....++...++.++.++.      -..+|.+...
T Consensus       230 --PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~  307 (466)
T PHA03270        230 --AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWH  307 (466)
T ss_pred             --ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEc
Confidence              47799999999999776775  4799999998753221111   111122222333333332      2789998754


Q ss_pred             CCc-----eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCC-CeEEEEeCCccCC
Q psy17058        259 AGK-----EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFD  316 (471)
Q Consensus       259 ~~~-----~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~~~~~  316 (471)
                      ...     .+.+..-.|+.+|.+.+.      ...|.   ..|.+.-.|. ..+.|+.++....
T Consensus       308 rd~vS~sR~nAa~~P~VY~~P~Isv~------F~dG~---AVCtA~CVPegV~l~W~V~D~~~p  362 (466)
T PHA03270        308 RDSVSFSRRNATGAPTVLPRPTIEME------FGGDE---AVCTAACVPEGVTLAWLLGADPAP  362 (466)
T ss_pred             cCCccceeecccccCccccCCeEEEE------EeCCE---EEEeccccCCCCEEEEEecCCCCC
Confidence            332     223334445555555433      33343   3487766554 4899998776553

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.63  E-value=6.2e-07  Score=65.96  Aligned_cols=81  Identities=20%  Similarity=0.265  Sum_probs=63.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCe-EEEEeCCCCCCcCCCceEEe-------eeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPT-QTWIRPDNDGKFGPDVEVYQ-------ELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .+.+.+|+.+.|.|.+ ...|.+. +.|.+++..+..........       -.+.|.|..++.+|.|.|+|.|.|....
T Consensus        12 ~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          12 TIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             eEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            4568899999999999 7888886 99999877533222211111       1357999999999999999999999988


Q ss_pred             eEEEEEEEEE
Q psy17058        262 EVMNAYIHVL  271 (471)
Q Consensus       262 ~~~~~~l~V~  271 (471)
                      .+.++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.63  E-value=1.4e-07  Score=69.57  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------CCCceEEe-----eeceEEEeccCCCCCeEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQ-----ELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~  252 (471)
                      .+.+|+.++|.|.+ .+.+.+.+.|+++++....              ..++....     ....|.|.+++.+|+|.|.
T Consensus         3 ~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            46789999999998 6678899999976633211              11111111     1246999999999999999


Q ss_pred             EEEEcCCC
Q psy17058        253 CIAENSAG  260 (471)
Q Consensus       253 C~~~~~~~  260 (471)
                      |.+.|..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99977543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.60  E-value=4.4e-07  Score=66.90  Aligned_cols=64  Identities=19%  Similarity=0.439  Sum_probs=47.2

Q ss_pred             CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------CCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------PPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      +++++.+|+++.|.|. .+.....+.|++.+...+         +.+..      ...+|.|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4678999999999999 665566788887632211         11111      2347999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.59  E-value=4.6e-08  Score=69.67  Aligned_cols=73  Identities=36%  Similarity=0.672  Sum_probs=49.3

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecC-CCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      |.+.+.+.. ... .+..+.|.|.+.+.+ .+.+.|+ +................+.|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~-~~~-~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPP-VVT-SGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTS-EEE-TTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCC-cEe-eceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            555555433 222 233399999999877 7799999 111111122223455678899999999999999999987

...

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.58  E-value=3.8e-07  Score=70.31  Aligned_cols=68  Identities=24%  Similarity=0.449  Sum_probs=50.9

Q ss_pred             EcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------------CCCCcc-------cCcEEEEcCCCCCCC
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------------LPPNMI-------AGETLIINGITKADE  152 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------------~~~~~~-------~~~~L~i~~v~~~D~  152 (471)
                      ..|..+.+.+|++|+|.|. ...+...+.|++.....               ...+..       ....|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            4566788999999999999 55577899999863211               011111       345899999999999


Q ss_pred             eEEEEEEEecC
Q psy17058        153 GVYICSIQNAQ  163 (471)
Q Consensus       153 G~Y~C~~~~~~  163 (471)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.56  E-value=5e-07  Score=69.68  Aligned_cols=67  Identities=21%  Similarity=0.460  Sum_probs=50.3

Q ss_pred             EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC-C------------------CCCcc------cCcEEEEcCCC
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ-L------------------PPNMI------AGETLIINGIT  148 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~-~------------------~~~~~------~~~~L~i~~v~  148 (471)
                      ...|..+.+.+|++++|.|. .+ +...+.|||..... .                  ..+..      ...+|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            34577889999999999999 55 66789999973210 0                  01110      34689999999


Q ss_pred             CCCCeEEEEEEEec
Q psy17058        149 KADEGVYICSIQNA  162 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~  162 (471)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.56  E-value=6.8e-07  Score=64.22  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      ..++..|+++.|.|..  ..+.+.+.|++++..+....++...  ...|.|..++..|+|.|.|.+.-
T Consensus         5 ~~tv~~g~~v~L~C~~--~s~~A~v~W~~ng~~l~~~~r~~~~--~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           5 NRTVAPGADVVLPCQL--RSNLASPVWLFNGTPLNAQFSYRVG--TDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEEecCCCEEEECCC--CCCCccEEEEECCcccCCCcceEEe--CCCCEEEECCHhhCEEEEEEEec
Confidence            4568899999999998  3346799999999986554443332  44578999999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.52  E-value=5.3e-07  Score=69.01  Aligned_cols=69  Identities=28%  Similarity=0.483  Sum_probs=49.6

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +...|..+.+.+|++|+|.|. .+.. ...+.|||......               ..+..     ....|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            455677889999999999999 4443 56799998731110               00111     22479999999999


Q ss_pred             CeEEEEEEEec
Q psy17058        152 EGVYICSIQNA  162 (471)
Q Consensus       152 ~G~Y~C~~~~~  162 (471)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.51  E-value=9.8e-07  Score=62.64  Aligned_cols=73  Identities=18%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCcccc-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCc-eEEEEEEEEec
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGT-EEKVITVAVEH  364 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  364 (471)
                      +.|.|.+.| .|.+.|.|++++..+......     ......++|.+..-..+|...|+|+|.|+.-. ...+..|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            689999987 788899999999988754221     11234567888777777878999999997542 45567777764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.49  E-value=2.1e-06  Score=63.26  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC--------CcCCCceEEe---eeceEEEeccCCCCCeEEEEEEEc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+.++.+|++++|.|.+ .+.....+.|++.+..+        ....++....   ...+|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            35678899999999999 55555678888766432        2334554433   233699999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.49  E-value=1.4e-06  Score=66.56  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             CCCcEEEEEEEeecC------------CCeEEEEeCCc--cCC------------Ccc--ccc-----ccCceeEEEEee
Q psy17058        288 PGEPLTLECEATGRP------------MPTVSWVKYIA--PFD------------RNL--ERD-----ELTSRAVYTIAS  334 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p------------~~~i~W~~~~~--~~~------------~~~--~~~-----~~~~~~~l~i~~  334 (471)
                      .|++++|.|......            .+.|.|+|...  ...            ...  +..     ......+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987432            35899998521  100            000  100     123678999999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      ++.+|+|.|.|.+.+........+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999999888888888888865

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.48  E-value=1.4e-06  Score=61.91  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEe
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLT  272 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~  272 (471)
                      +.|.|.+.++.|.+.|+|++++..+......     ......++|.|..-..+|+..|+|+|.|..-. ......|.|++
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            6899999888999999999999775443211     11122456888777777777999999986532 45566777765

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.48  E-value=2.1e-06  Score=60.72  Aligned_cols=68  Identities=16%  Similarity=0.283  Sum_probs=52.3

Q ss_pred             EEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      +++.+ +..+..|++++|+|. .+  .|.+.++|...++...........+|.+..+...|+|.++|.+...
T Consensus         3 vT~s~-~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           3 LTATS-SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             EecCC-CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            44544 447899999999999 33  4455999998855544333347789999999999999999999754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.47  E-value=1.1e-06  Score=65.42  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC----CC--cccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP----PN--MIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~----~~--~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      |.+...| ...|.+|++|+|.|....+...+.|+|++...-.    ..  ......+.|.+++.+|+|.|+|....
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            5666666 5569999999999984445678999999443211    11  11355789999999999999998753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.46  E-value=1.1e-06  Score=67.77  Aligned_cols=77  Identities=16%  Similarity=0.408  Sum_probs=52.0

Q ss_pred             CCceeecCCCcEEEEee-CC----CCCCeEEEEeC--------------CCCCCC-------CCc-------ccCcEEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SN----DPSATIKWSKD--------------NQEQLP-------PNM-------IAGETLII  144 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~----~p~~~v~W~~~--------------~~~~~~-------~~~-------~~~~~L~i  144 (471)
                      +..+.+..|+++.|.|. .+    .+...+.|.+.              ++....       ++.       ..+.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            45778999999999999 33    23468999332              122221       111       14568999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        145 NGITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      .+++.+|+|.|+|.+.|..+. ......+.+
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~-~~~~~~~~l  114 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI-VGKSSQVTL  114 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc-CCceeEEEE
Confidence            999999999999999987664 333344443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.46  E-value=1.1e-06  Score=65.46  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=45.0

Q ss_pred             CCcEEEEee-CCCCCCeEEEEeCCCCCCC-------------------CCcc--cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        106 GSQVTIECK-SNDPSATIKWSKDNQEQLP-------------------PNMI--AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       106 G~~v~l~C~-~~~p~~~v~W~~~~~~~~~-------------------~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      |++|+|.|. .......+.|+++......                   .+..  .+.+|+|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            789999999 5556668999998432211                   0000  45789999999999999999998876


Q ss_pred             Cc
Q psy17058        164 GN  165 (471)
Q Consensus       164 ~~  165 (471)
                      +.
T Consensus        81 ~~   82 (92)
T cd05741          81 GV   82 (92)
T ss_pred             Cc
Confidence            54

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.45  E-value=9.4e-07  Score=64.04  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce-------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEE
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-------VYQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIH  269 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~  269 (471)
                      +.|.|.+.++.|.+.++|++++..+.......       .....+.|.|.....+|.|.|+|.+.|....  ...++.|+
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            68999996567889999999987643221100       0111346778887788899999999987644  34444444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.44  E-value=1e-07  Score=67.81  Aligned_cols=69  Identities=28%  Similarity=0.583  Sum_probs=49.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCC----CCcccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLP----PNMIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +|.|.+.+.......+. +.|.|. .+.+ .+.+.|+.. .....    ......+.|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            47788887776666665 999999 5555 889999911 11100    0111567899999999999999999986

...

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.43  E-value=2.2e-06  Score=65.65  Aligned_cols=77  Identities=22%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             CCCcEEEEEEEeecC------CCeEEEEeCCcc-------C-C--------C-c-cccc---ccCceeEEEEeecCCCCC
Q psy17058        288 PGEPLTLECEATGRP------MPTVSWVKYIAP-------F-D--------R-N-LERD---ELTSRAVYTIASVRESDA  340 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p------~~~i~W~~~~~~-------~-~--------~-~-~~~~---~~~~~~~l~i~~~~~~d~  340 (471)
                      .|++++|.|.....|      ...+.|++....       + .        . . .+..   ......+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      236999986421       0 0        0 0 0000   012356899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEec
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      |.|.|.+.+..+..+..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999999999998864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.42  E-value=2e-06  Score=65.79  Aligned_cols=77  Identities=23%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             CCCcEEEEEEEeecC------CCeEEEEeCC---ccC-------CCc------c--c---ccccCceeEEEEeecCCCCC
Q psy17058        288 PGEPLTLECEATGRP------MPTVSWVKYI---APF-------DRN------L--E---RDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p------~~~i~W~~~~---~~~-------~~~------~--~---~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .|++++|.|.....+      ...+.|++..   ...       ...      .  +   ........+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987653      3489999973   110       000      0  0   01123567999999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEec
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      |.|.|.+.+..+..+..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888999998875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.40  E-value=3.7e-06  Score=63.44  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-------------------CcCCCceEEeeeceEEEeccCCCCCeEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-------------------KFGPDVEVYQELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  252 (471)
                      .+.+|+++.|.|.. ...+...++|+|.....                   ....+..+.. +++|.|.+++..|+|.|+
T Consensus         9 ~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           9 QVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             cccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCEEEE
Confidence            46789999999975 33334489999963221                   0122333333 678999999999999999


Q ss_pred             EEEEcCCC-ceEEEEEEE
Q psy17058        253 CIAENSAG-KEVMNAYIH  269 (471)
Q Consensus       253 C~~~~~~~-~~~~~~~l~  269 (471)
                      |.+.+... .....+.|.
T Consensus        87 ~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          87 LQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEeCCccEEEEEEEEE
Confidence            99998763 344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.40  E-value=1.6e-06  Score=67.23  Aligned_cols=68  Identities=19%  Similarity=0.482  Sum_probs=47.3

Q ss_pred             CCceeecCCCcEEEEee-CCCC----CCeEEEEeCC---CCC--C---------------CCCc-------ccCcEEEEc
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP----SATIKWSKDN---QEQ--L---------------PPNM-------IAGETLIIN  145 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~---~~~--~---------------~~~~-------~~~~~L~i~  145 (471)
                      |..+.+.+|++++|.|. ...+    ...+.|++..   +..  +               ..+.       ....+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            56788999999999999 3322    2469997531   110  0               0010       024579999


Q ss_pred             CCCCCCCeEEEEEEEecCCc
Q psy17058        146 GITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      +++.+|+|.|+|.+.+..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999986653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.37  E-value=3.2e-06  Score=62.82  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=51.7

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      |.+...+  ...+..|++|+|.|.... +...+.|+|++.......  ..........|.|..++.+|+|.|+|...
T Consensus         2 P~l~a~p--~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHP--SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecC--CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4444443  346789999999998764 455899999987644221  11123446689999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.37  E-value=2.6e-06  Score=66.32  Aligned_cols=68  Identities=24%  Similarity=0.549  Sum_probs=47.6

Q ss_pred             CCceeecCCCcEEEEee-CC-C---CCCeEEEEeCCCCC--------------C---CCCcc-----------cCcEEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SN-D---PSATIKWSKDNQEQ--------------L---PPNMI-----------AGETLII  144 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~-~---p~~~v~W~~~~~~~--------------~---~~~~~-----------~~~~L~i  144 (471)
                      |..+.+.+|++|+|.|. .. .   ....+.|++.....              .   ..+..           ...+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            66788999999999998 32 2   12569998742100              0   00100           2357999


Q ss_pred             cCCCCCCCeEEEEEEEecCCc
Q psy17058        145 NGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      .+++.+|+|.|.|.+.+..+.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999986553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.36  E-value=6e-05  Score=69.68  Aligned_cols=196  Identities=19%  Similarity=0.286  Sum_probs=117.0

Q ss_pred             cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEE
Q psy17058        140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWI  217 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~  217 (471)
                      -.|.|..++..++|.|+-...+..+. ......+.|....+|.+.+.+.   .+.+|+...-.|.+...+|.  ..++|+
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t-~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGT-LVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCc-eeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            35999999999999998776565554 4556677776667788777654   57799999999999766765  479999


Q ss_pred             eCCCCCCcCCC----ceEEe-----eeceEEEeccCC-CCCeEEEEEEEcCCCce-----EEEEEEEEEeCCceeeCCCc
Q psy17058        218 RPDNDGKFGPD----VEVYQ-----ELGVLRFNNIAT-GDEGKYTCIAENSAGKE-----VMNAYIHVLTLPAVTITPSE  282 (471)
Q Consensus       218 ~~~~~~~~~~~----~~~~~-----~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~~~~~~  282 (471)
                      +|+..+.....    .....     ..++|.+..... +..-..+|.+.......     +....-.|..+|.+.+    
T Consensus       274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~----  349 (486)
T PHA03273        274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV----  349 (486)
T ss_pred             eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE----
Confidence            99987552221    11111     122344443222 33348999987543321     1233344555555543    


Q ss_pred             cEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCcc----cccccCceeEEEEee---cCCCCCe--EEEEEEEc
Q psy17058        283 YVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNL----ERDELTSRAVYTIAS---VRESDAG--QYKCIGKN  349 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~---~~~~d~G--~Y~C~a~n  349 (471)
                        ....|+   ..|.+.-.|.  ..+.|+.++..-....    ...-...-+...|.+   +...| |  +|+|.+..
T Consensus       350 --~F~~G~---AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~G  421 (486)
T PHA03273        350 --TVEDGD---AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIEG  421 (486)
T ss_pred             --EEeCCE---EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEee
Confidence              333343   3488877665  5899988763111110    000112223444554   33343 5  99999864

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.36  E-value=4.5e-06  Score=63.84  Aligned_cols=77  Identities=17%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             cCCeEEEEEEccCCCC-----------CCeEEEEeCCCC--C--------------CcCCCceEEe-----eeceEEEec
Q psy17058        195 VGDRADIQCVLEAGEP-----------SPTQTWIRPDND--G--------------KFGPDVEVYQ-----ELGVLRFNN  242 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p-----------~~~v~W~~~~~~--~--------------~~~~~~~~~~-----~~~~l~i~~  242 (471)
                      .|++++|.|......+           .+.+.|+|....  .              ....++.+..     .+..|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            3899999998843221           358999985321  0              1112333322     356899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        243 IATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      ++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999877777777777765

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.35  E-value=4.2e-06  Score=63.31  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             CCcEEEEEEEeecCC---CeEEEEeCCccC-----------CC----c--cccc-----ccCceeEEEEeecCCCCCeEE
Q psy17058        289 GEPLTLECEATGRPM---PTVSWVKYIAPF-----------DR----N--LERD-----ELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       289 g~~v~l~C~~~g~p~---~~i~W~~~~~~~-----------~~----~--~~~~-----~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      |++++|.|.......   ..+.|++.....           ..    .  .+..     ......+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            788999999863222   258888754211           00    0  0100     112357899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy17058        344 KCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       344 ~C~a~n~~g~~~~~~~l~V  362 (471)
                      +|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888888888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.35  E-value=3.3e-06  Score=64.59  Aligned_cols=71  Identities=24%  Similarity=0.462  Sum_probs=48.1

Q ss_pred             CCCcEEEEee-CCC------CCCeEEEEeCC--CC-C------CCC------Cc----------ccCcEEEEcCCCCCCC
Q psy17058        105 EGSQVTIECK-SND------PSATIKWSKDN--QE-Q------LPP------NM----------IAGETLIINGITKADE  152 (471)
Q Consensus       105 ~G~~v~l~C~-~~~------p~~~v~W~~~~--~~-~------~~~------~~----------~~~~~L~i~~v~~~D~  152 (471)
                      .|++|+|.|. ...      ....+.|++..  .. .      ...      ..          ....+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            4899999999 332      35689999972  11 0      000      00          0456899999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEe
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |.|.|.+.+..+. ......|.|.
T Consensus        81 G~Y~C~v~~~~~~-~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIED-EQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCc-eEEEEEEEEE
Confidence            9999999986544 4444455543

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.34  E-value=2.3e-06  Score=64.37  Aligned_cols=60  Identities=27%  Similarity=0.546  Sum_probs=43.7

Q ss_pred             eecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeEEEEE
Q psy17058        102 SAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGVYICS  158 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      .+.+|++|+|.|. .+.  ....+.||+......+               .+..     ....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            5789999999999 443  4567999997322111               0111     334799999999999999999


Q ss_pred             EEe
Q psy17058        159 IQN  161 (471)
Q Consensus       159 ~~~  161 (471)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.34  E-value=4.9e-06  Score=63.66  Aligned_cols=77  Identities=16%  Similarity=0.267  Sum_probs=53.5

Q ss_pred             cCCeEEEEEEccCC-----CCCCeEEEEeCCCCC-C-----------------cCCCceEEe---eeceEEEeccCCCCC
Q psy17058        195 VGDRADIQCVLEAG-----EPSPTQTWIRPDNDG-K-----------------FGPDVEVYQ---ELGVLRFNNIATGDE  248 (471)
Q Consensus       195 ~g~~~~L~C~~~~~-----~p~~~v~W~~~~~~~-~-----------------~~~~~~~~~---~~~~l~i~~~~~~d~  248 (471)
                      .|+.++|.|.....     .....+.|+|..... +                 ...++.+..   ....|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999987322     123579999964210 0                 112222211   134799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEE
Q psy17058        249 GKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       249 G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988888888888775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.33  E-value=0.0003  Score=64.04  Aligned_cols=197  Identities=16%  Similarity=0.213  Sum_probs=106.0

Q ss_pred             cEEEEcCCCCCCCeEEEEEEEecCCc-eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEE
Q psy17058        140 ETLIINGITKADEGVYICSIQNAQGN-VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTW  216 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W  216 (471)
                      -.|.|.++...|+|.|.-...+.... .......+.+ ..-+|.+.+.+.   .+.+|+...-.|.+...+|+  ..++|
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v-~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrW  282 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRV-CQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSW  282 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEE-EecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEE
Confidence            37899999999999665444443222 1222222222 234555666654   46799999999999766776  47999


Q ss_pred             EeCCCCCCcCCCceEE----------eeeceEEEeccCCCCCeEEEEEEEcCCCce----EEEEEEEEEeCCceeeCCCc
Q psy17058        217 IRPDNDGKFGPDVEVY----------QELGVLRFNNIATGDEGKYTCIAENSAGKE----VMNAYIHVLTLPAVTITPSE  282 (471)
Q Consensus       217 ~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~p~~~~~~~~  282 (471)
                      ++||............          ..-++|.+.+...+..-..+|.+.......    +.++.-.|..+|.+.+    
T Consensus       283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv----  358 (490)
T PHA03271        283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL----  358 (490)
T ss_pred             EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE----
Confidence            9998764322111110          112234443333333448999987644322    2222233444444433    


Q ss_pred             cEEecCCCcEEEEEEEeecCC-CeEEEEeCCccCCCccc-----ccccCceeEEEEee-cCCCCC---eEEEEEEEc
Q psy17058        283 YVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFDRNLE-----RDELTSRAVYTIAS-VRESDA---GQYKCIGKN  349 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~-----~~~~~~~~~l~i~~-~~~~d~---G~Y~C~a~n  349 (471)
                        ....|+   ..|.+.-.|. .++.|+-++........     ..-....+...|.+ .-.+|.   -.|+|++..
T Consensus       359 --~FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        359 --AFKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             --EEeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence              334443   3477765553 48999987765432211     00011123334444 222332   489999764

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.32  E-value=2e-06  Score=65.83  Aligned_cols=63  Identities=29%  Similarity=0.495  Sum_probs=46.2

Q ss_pred             eecCCCcEEEEee-CCC-CCCeEEEEeCCCCCC------------------CCCcc-------cCcEEEEcCCCCCCCeE
Q psy17058        102 SAPEGSQVTIECK-SND-PSATIKWSKDNQEQL------------------PPNMI-------AGETLIINGITKADEGV  154 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~------------------~~~~~-------~~~~L~i~~v~~~D~G~  154 (471)
                      .+.+|++++|.|. ... +...+.|++......                  ..+..       ...+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            5789999999999 443 667899999733110                  01111       23489999999999999


Q ss_pred             EEEEEEecCC
Q psy17058        155 YICSIQNAQG  164 (471)
Q Consensus       155 Y~C~~~~~~~  164 (471)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.32  E-value=1.7e-06  Score=64.76  Aligned_cols=72  Identities=19%  Similarity=0.354  Sum_probs=49.3

Q ss_pred             cCCCcEEEEee-CC-CCCCeEEEEeCCCCCC--------C----------CCcc---cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058        104 PEGSQVTIECK-SN-DPSATIKWSKDNQEQL--------P----------PNMI---AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus       104 ~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~--------~----------~~~~---~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..|++|+|.|. .. .....+.|++.....+        .          .+..   ...+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998 43 4556899998621100        0          0011   34789999999999999999999


Q ss_pred             ecCCceeeeeEEEEE
Q psy17058        161 NAQGNVFQDYASIQV  175 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v  175 (471)
                      ...+........|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            877653444444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.32  E-value=6.8e-05  Score=69.51  Aligned_cols=198  Identities=16%  Similarity=0.217  Sum_probs=115.2

Q ss_pred             cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEE
Q psy17058        140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWI  217 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~  217 (471)
                      -.|.|.+++..++|.|.=.+.+...........+.|....+|.+.+.+.   .+.+|+...-.|.+...+|.  ..++|+
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf  365 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWT  365 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            3699999999999999877654332214445667777667787776654   57799999999999766765  479999


Q ss_pred             eCCCCCCcC---CCceEEee-----eceEEEeccCCCC--CeEEEEEEEcCCCce-----EEEEEEEEEeCCceeeCCCc
Q psy17058        218 RPDNDGKFG---PDVEVYQE-----LGVLRFNNIATGD--EGKYTCIAENSAGKE-----VMNAYIHVLTLPAVTITPSE  282 (471)
Q Consensus       218 ~~~~~~~~~---~~~~~~~~-----~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~~~~~~  282 (471)
                      +|+..+...   .......+     .++|.+......|  --..+|.+.......     +.+..-.|+.+|.+.+    
T Consensus       366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm----  441 (566)
T PHA03269        366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI----  441 (566)
T ss_pred             eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE----
Confidence            998775531   11111121     2234432211111  336799987543321     2333444555555543    


Q ss_pred             cEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCcccc---cccCceeEEEEee---cCCCC-CeEEEEEEEc
Q psy17058        283 YVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNLER---DELTSRAVYTIAS---VRESD-AGQYKCIGKN  349 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~---~~~~d-~G~Y~C~a~n  349 (471)
                        ....|+   ..|.+.-.|.  ..+.|+.++.........   .-...-+...|.+   +...| --+|+|++..
T Consensus       442 --~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        442 --EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             --EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence              333443   3488776665  379999877664321110   0111223444444   33333 2389999764

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.32  E-value=3.9e-06  Score=62.95  Aligned_cols=70  Identities=21%  Similarity=0.411  Sum_probs=46.3

Q ss_pred             CCcEEEEee-CCCC-CCeEEEEeCCCCCC--------------CCCcc----------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058        106 GSQVTIECK-SNDP-SATIKWSKDNQEQL--------------PPNMI----------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus       106 G~~v~l~C~-~~~p-~~~v~W~~~~~~~~--------------~~~~~----------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      |++|+|.|. .... ...+.|+|..+...              .....          ...+|+|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998 4332 23699998633210              00000          3568999999999999999998


Q ss_pred             EecCCceeeeeEEEEE
Q psy17058        160 QNAQGNVFQDYASIQV  175 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v  175 (471)
                      .............|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7544332555555555

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.32  E-value=2e-06  Score=66.87  Aligned_cols=70  Identities=23%  Similarity=0.537  Sum_probs=51.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCC----CC----------------CCcc-------cCcEEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQ----LP----------------PNMI-------AGETLI  143 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~----~~----------------~~~~-------~~~~L~  143 (471)
                      .++..|..+.+.+|+++.|.|. . ......+.|++.....    +.                .+..       ...+|.
T Consensus         3 ~vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   82 (114)
T PF07686_consen    3 QVTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT   82 (114)
T ss_dssp             EEEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred             eEEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence            3555678889999999999999 5 4566689999963311    00                0000       234799


Q ss_pred             EcCCCCCCCeEEEEEEEec
Q psy17058        144 INGITKADEGVYICSIQNA  162 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~  162 (471)
                      |.+++.+|+|.|.|.+...
T Consensus        83 i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   83 IKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESSESGGGEEEEEEEEEES
T ss_pred             ECCCCcCcCEEEEEEEEEC
Confidence            9999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.32  E-value=4.5e-06  Score=64.29  Aligned_cols=71  Identities=23%  Similarity=0.374  Sum_probs=51.9

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------Ccccc--cccCceeEEEEeecCCCCCeEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLER--DELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~--~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ..+.+.+|++++|.|.+.+.+...+.|++....  ..              .....  ........|.|.+++.+|+|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            356889999999999998777779999985321  00              00000  1123567899999999999999


Q ss_pred             EEEEEcCCC
Q psy17058        344 KCIGKNSAG  352 (471)
Q Consensus       344 ~C~a~n~~g  352 (471)
                      .|.+.+..+
T Consensus        86 ~C~~~~~~~   94 (109)
T cd04983          86 FCALSESGG   94 (109)
T ss_pred             EEEEecCCC
Confidence            999997653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.32  E-value=2.8e-06  Score=63.19  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=51.1

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCc-----------------ccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRN-----------------LERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      |++|+|.|.........+.|++........                 ..+.....+.+|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            789999999876555589999876443210                 011112344789999999999999999999876


Q ss_pred             Cce-EEEEEEE
Q psy17058        352 GTE-EKVITVA  361 (471)
Q Consensus       352 g~~-~~~~~l~  361 (471)
                      |.. ...+.|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            543 4555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.27  E-value=9.2e-06  Score=62.32  Aligned_cols=77  Identities=23%  Similarity=0.399  Sum_probs=55.5

Q ss_pred             CCCcEEEEEEEeecC----------CCeEEEEeCC--ccCC------------Ccc--cc-----cccCceeEEEEeecC
Q psy17058        288 PGEPLTLECEATGRP----------MPTVSWVKYI--APFD------------RNL--ER-----DELTSRAVYTIASVR  336 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p----------~~~i~W~~~~--~~~~------------~~~--~~-----~~~~~~~~l~i~~~~  336 (471)
                      .|++++|.|.....+          ...+.|++..  ....            ...  +.     .......+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999987543          2469999852  1110            000  10     012355789999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        337 ESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      .+|+|.|.|.+.......+..+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999999877888888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.25  E-value=5e-06  Score=61.66  Aligned_cols=73  Identities=18%  Similarity=0.315  Sum_probs=52.7

Q ss_pred             CcEEEcCCceeecCCCcEEEEee--CCCCCCe--EEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEE
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK--SNDPSAT--IKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICS  158 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~--v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      -.|.+.+....+.+|+.++|.|.  .+.|.+.  +.||++ +..+.....         ...+|.+..-..+|...|+|+
T Consensus         2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG-~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~   80 (100)
T cd05755           2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG-NETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCE   80 (100)
T ss_pred             ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeC-CEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEE
Confidence            45677777777899999999999  6778886  799999 554433211         345677765555566699999


Q ss_pred             EEecCCc
Q psy17058        159 IQNAQGN  165 (471)
Q Consensus       159 ~~~~~~~  165 (471)
                      |.+....
T Consensus        81 A~l~l~~   87 (100)
T cd05755          81 TELDLRP   87 (100)
T ss_pred             EEeccCc
Confidence            9876543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.24  E-value=8.4e-06  Score=62.81  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC------------------Ccccc-cccCceeEEEEeecCCCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD------------------RNLER-DELTSRAVYTIASVRESDA  340 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~------------------~~~~~-~~~~~~~~l~i~~~~~~d~  340 (471)
                      ..+.+.+|++++|.|.+.+ +...+.|+|....  ..                  ..... ........|.|.+++.+|+
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence            3568899999999999987 6678999986431  11                  00000 0112457899999999999


Q ss_pred             eEEEEEEEcCCC
Q psy17058        341 GQYKCIGKNSAG  352 (471)
Q Consensus       341 G~Y~C~a~n~~g  352 (471)
                      |.|.|.+.+..+
T Consensus        85 g~Y~Ca~~~~~~   96 (110)
T cd05899          85 AVYLCASSLGGG   96 (110)
T ss_pred             EEEEEEeeCCCC
Confidence            999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.23  E-value=9.3e-06  Score=61.13  Aligned_cols=74  Identities=18%  Similarity=0.390  Sum_probs=49.5

Q ss_pred             CeEEEEEEccCCC--CCCeEEEEeCCCCC-----------------CcCCCceEEe---eeceEEEeccCCCCCeEEEEE
Q psy17058        197 DRADIQCVLEAGE--PSPTQTWIRPDNDG-----------------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       197 ~~~~L~C~~~~~~--p~~~v~W~~~~~~~-----------------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      ++++|.|......  ....+.|+|.....                 ....+..+..   ....|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999884333  23479999965420                 0011222221   245799999999999999999


Q ss_pred             EEc-CCCceEEEEEEEE
Q psy17058        255 AEN-SAGKEVMNAYIHV  270 (471)
Q Consensus       255 ~~~-~~~~~~~~~~l~V  270 (471)
                      +.. ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5667777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.23  E-value=1.1e-05  Score=60.77  Aligned_cols=73  Identities=27%  Similarity=0.397  Sum_probs=51.5

Q ss_pred             CcEEEEEEEeecC---CCeEEEEeCCccCC---------------Cc--ccccc---cCceeEEEEeecCCCCCeEEEEE
Q psy17058        290 EPLTLECEATGRP---MPTVSWVKYIAPFD---------------RN--LERDE---LTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       290 ~~v~l~C~~~g~p---~~~i~W~~~~~~~~---------------~~--~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      ++++|.|.....+   ...+.|+|....-.               ..  .+...   .....+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999987644   33799999653200               00  00000   11467999999999999999999


Q ss_pred             EEc-CCCceEEEEEEEE
Q psy17058        347 GKN-SAGTEEKVITVAV  362 (471)
Q Consensus       347 a~n-~~g~~~~~~~l~V  362 (471)
                      +.+ +.|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 6788888888877

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.22  E-value=4.8e-06  Score=64.91  Aligned_cols=66  Identities=26%  Similarity=0.417  Sum_probs=48.3

Q ss_pred             EcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~  145 (471)
                      ..|..+.+.+|++|+|.|. .+  .+...+.||+.....-                    ..+..       ....|+|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3466788999999999999 44  5677899999621110                    11111       23579999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy17058        146 GITKADEGVYICSIQN  161 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~  161 (471)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.22  E-value=1.2e-05  Score=60.71  Aligned_cols=75  Identities=24%  Similarity=0.420  Sum_probs=49.0

Q ss_pred             CCeEEEEEEccCCC--CCCeEEEEeCCCCC-----------C------cCCCceEE-----eeeceEEEeccCCCCCeEE
Q psy17058        196 GDRADIQCVLEAGE--PSPTQTWIRPDNDG-----------K------FGPDVEVY-----QELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       196 g~~~~L~C~~~~~~--p~~~v~W~~~~~~~-----------~------~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y  251 (471)
                      |++++|.|......  ....+.|++.....           .      ...+..+.     ....+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            68899999873221  12368888754211           0      11222221     1235799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy17058        252 TCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       252 ~C~~~~~~~~~~~~~~l~V  270 (471)
                      +|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776666666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.21  E-value=9.2e-06  Score=63.27  Aligned_cols=69  Identities=20%  Similarity=0.329  Sum_probs=49.6

Q ss_pred             EEEcCCceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCC---------------CCCcc-------cCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQL---------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~---------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      +...|..+.+.+|++|+|.|. .. .....+.|++......               .++..       ...+|.|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            445677888999999999999 33 3456799999622110               11111       234799999999


Q ss_pred             CCCeEEEEEEEec
Q psy17058        150 ADEGVYICSIQNA  162 (471)
Q Consensus       150 ~D~G~Y~C~~~~~  162 (471)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~Y~C~~~~~   94 (116)
T cd07706          82 EDSAKYFCALSTL   94 (116)
T ss_pred             HHCEEEEEEEECC
Confidence            9999999998753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.21  E-value=8.4e-06  Score=60.46  Aligned_cols=70  Identities=23%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             EecCCCcEEEEEEEee-cCCCe--EEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        285 SVRPGEPLTLECEATG-RPMPT--VSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g-~p~~~--i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+.+|+.++|+|.+.| .|.+.  |.|++++..+.......    ......+|++.....+|.-.|+|+|.+..+..
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            5689999999999987 77775  79999998886532211    13345677776655666669999999876643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.20  E-value=8.6e-06  Score=58.84  Aligned_cols=63  Identities=22%  Similarity=0.380  Sum_probs=43.5

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCcccccc------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERDE------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +.|.|.+.+ +|.+++.|+++++.+........      ....+.|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999987 58889999999988753321111      1123445555555667779999999986643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.20  E-value=1.1e-05  Score=58.22  Aligned_cols=63  Identities=19%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCccccc-c------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERD-E------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +.|+|.+.| +|.+.|+|+++|+.+....... .      ....+.|.+.....++...|+|.|.|.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            689999987 6888999999998876432101 1      1122445555556677789999999986543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.19  E-value=1.4e-05  Score=58.99  Aligned_cols=68  Identities=25%  Similarity=0.496  Sum_probs=45.2

Q ss_pred             CcEEEEee--CCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058        107 SQVTIECK--SNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus       107 ~~v~l~C~--~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ++++|.|.  .......|.|.|..+..                  ..++..      .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            36889998  33344588998752211                  001111      46799999999999999999986


Q ss_pred             e-cCCceeeeeEEEEE
Q psy17058        161 N-AQGNVFQDYASIQV  175 (471)
Q Consensus       161 ~-~~~~~~~~~~~l~v  175 (471)
                      . +.|. ......|.|
T Consensus        81 tfP~G~-~~~~~~l~~   95 (96)
T cd05887          81 TFPLGN-TQSSTTVTV   95 (96)
T ss_pred             eCCCCC-eeEEEEEEE
Confidence            5 4454 666666655

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.18  E-value=7e-06  Score=61.42  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=49.1

Q ss_pred             cCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccc--cc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        287 RPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLE--RD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ..|+.+.|.|.+.|+ |. +.++|+++|..+.....  ..      .....+.|.+.....++.+.|+|.|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468999999999996 64 58999999988764321  01      1122345667777777999999999997664

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.18  E-value=5.2e-06  Score=62.16  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-----------------CCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-----------------GPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .|++|+|.|..........+.|++....+..                 ..++.+...+..|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            6999999998733244568999986421110                 11233333346899999999999999999987


Q ss_pred             CCCc-eEEEEEEEE
Q psy17058        258 SAGK-EVMNAYIHV  270 (471)
Q Consensus       258 ~~~~-~~~~~~l~V  270 (471)
                      ..+. ....+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            7654 355566655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.18  E-value=1.9e-05  Score=60.86  Aligned_cols=72  Identities=18%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             cEEecCCCcEEEEEEEeecC----CCeEEEEe---------------CCccCCCc-----ccc----cccCceeEEEEee
Q psy17058        283 YVSVRPGEPLTLECEATGRP----MPTVSWVK---------------YIAPFDRN-----LER----DELTSRAVYTIAS  334 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p----~~~i~W~~---------------~~~~~~~~-----~~~----~~~~~~~~l~i~~  334 (471)
                      .+.+..|+++.|.|......    ...+.|.+               ++......     .+.    .......++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            45788899999999987533    23799943               22221100     000    1124567899999


Q ss_pred             cCCCCCeEEEEEEEcCCCce
Q psy17058        335 VRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ++.+|.|.|+|.+.|..+..
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcC
Confidence            99999999999999986644

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.17  E-value=6.8e-06  Score=62.81  Aligned_cols=68  Identities=26%  Similarity=0.397  Sum_probs=49.0

Q ss_pred             EecCCCcEEEEEEEeec-CCCeEEEEeCCcc--CC-----------------Ccccccc--cCceeEEEEeecCCCCCeE
Q psy17058        285 SVRPGEPLTLECEATGR-PMPTVSWVKYIAP--FD-----------------RNLERDE--LTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~--~~-----------------~~~~~~~--~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+|++++|.|.+.+. +...+.|++....  ..                 .......  .....+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999875 5568999985431  10                 0000001  1145689999999999999


Q ss_pred             EEEEEEcCCC
Q psy17058        343 YKCIGKNSAG  352 (471)
Q Consensus       343 Y~C~a~n~~g  352 (471)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=2.1e-05  Score=58.16  Aligned_cols=74  Identities=18%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             CeEEEEEEccCCCCCCeEEEEeCCCCC-----------------CcCCCceEE---eeeceEEEeccCCCCCeEEEEEEE
Q psy17058        197 DRADIQCVLEAGEPSPTQTWIRPDNDG-----------------KFGPDVEVY---QELGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       197 ~~~~L~C~~~~~~p~~~v~W~~~~~~~-----------------~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      +.++|.|..........++|.|.....                 ....+..+.   ..+.+|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            368999998433344589998853210                 111222221   125689999999999999999976


Q ss_pred             c-CCCceEEEEEEEE
Q psy17058        257 N-SAGKEVMNAYIHV  270 (471)
Q Consensus       257 ~-~~~~~~~~~~l~V  270 (471)
                      . +.|..+.++.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            4 6777888888776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.16  E-value=2.2e-05  Score=60.24  Aligned_cols=77  Identities=16%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CCeEEEEEEccCCCC---------CCeEEEEeCCC--CC--------------CcCCCceEE-----eeeceEEEeccCC
Q psy17058        196 GDRADIQCVLEAGEP---------SPTQTWIRPDN--DG--------------KFGPDVEVY-----QELGVLRFNNIAT  245 (471)
Q Consensus       196 g~~~~L~C~~~~~~p---------~~~v~W~~~~~--~~--------------~~~~~~~~~-----~~~~~l~i~~~~~  245 (471)
                      |++++|.|......+         ...+.|+|...  ..              ....+..+.     .....|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            889999998843222         36799998632  10              011222221     1245799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        246 GDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                      +|+|.|.|.+..........+.|.|..
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998766777788888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.15  E-value=2.2e-05  Score=59.92  Aligned_cols=84  Identities=17%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             EeCCceeeCCCccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCe
Q psy17058        271 LTLPAVTITPSEYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       271 ~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G  341 (471)
                      ..+|...+..........|+.++|.|.+.| +|. .+++|++||+.+.......       .....+.|.+.....++.-
T Consensus         3 ~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~   82 (111)
T cd05772           3 RAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHS   82 (111)
T ss_pred             ccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccC
Confidence            445554443322334567888999999998 564 4899999999875421111       1112334545543333333


Q ss_pred             EEEEEEEcCCCce
Q psy17058        342 QYKCIGKNSAGTE  354 (471)
Q Consensus       342 ~Y~C~a~n~~g~~  354 (471)
                      .|+|.+.+.....
T Consensus        83 ~ytC~V~H~~l~~   95 (111)
T cd05772          83 QVTCEVQHRTLQA   95 (111)
T ss_pred             ceEEEEEeCCCCC
Confidence            6999999976443

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.15  E-value=3.3e-05  Score=57.63  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=33.4

Q ss_pred             ceeEEEEeecCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy17058        326 SRAVYTIASVRESDAGQYKCIGKN-SAGTEEKVITVAV  362 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V  362 (471)
                      ...+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            457899999999999999999999 7888888888887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.14  E-value=2e-05  Score=58.80  Aligned_cols=37  Identities=30%  Similarity=0.569  Sum_probs=29.1

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEe-cCCceeeeeEEEEE
Q psy17058        138 AGETLIINGITKADEGVYICSIQN-AQGNVFQDYASIQV  175 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~~l~v  175 (471)
                      .+.+|.|.+++.+|+|.|+|.+.+ +.|. .+....|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence            457999999999999999999998 4554 555555554

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.13  E-value=3e-05  Score=54.95  Aligned_cols=75  Identities=16%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             EecCCCcEEEEEEEeecC--CCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        285 SVRPGEPLTLECEATGRP--MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      .+..|++++|+|.....+  .+.++|...+....    ........+|.+..++..|+|.++|.+.-..-.....+.|.|
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V   85 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV   85 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence            677899999999996534  44899997655422    112356779999999999999999999865444455555555


Q ss_pred             e
Q psy17058        363 E  363 (471)
Q Consensus       363 ~  363 (471)
                      .
T Consensus        86 l   86 (88)
T cd07694          86 L   86 (88)
T ss_pred             E
Confidence            3

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.11  E-value=2.2e-05  Score=64.01  Aligned_cols=78  Identities=22%  Similarity=0.418  Sum_probs=55.6

Q ss_pred             ceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCC---------CC----CCcc------cCcEEEEcCCCCCCCeEEEEE
Q psy17058        100 QQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQ---------LP----PNMI------AGETLIINGITKADEGVYICS  158 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~---------~~----~~~~------~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      .++|.+|++|+|.|. . +.....+.|+|.++..         +.    ++..      ....|+|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            457999999999999 3 5567889999973211         10    1111      457899999999999999999


Q ss_pred             EEec-CCceeeeeEEEEEee
Q psy17058        159 IQNA-QGNVFQDYASIQVDK  177 (471)
Q Consensus       159 ~~~~-~~~~~~~~~~l~v~~  177 (471)
                      ...- .|...+....|.|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            8653 341366666777764

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.10  E-value=2.1e-05  Score=59.24  Aligned_cols=36  Identities=33%  Similarity=0.617  Sum_probs=27.2

Q ss_pred             CcEEEEcCCCCCCCeEEEEEEEe-cCCceeeeeEEEEE
Q psy17058        139 GETLIINGITKADEGVYICSIQN-AQGNVFQDYASIQV  175 (471)
Q Consensus       139 ~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~~l~v  175 (471)
                      ..+|+|.+++.+|+|.|.|.+.+ +.|. ......|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            56899999999999999999987 4444 444444443

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.10  E-value=8.8e-06  Score=61.13  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      |.+.+.+........++.++|.|.+.| +| ...+.|+++|..+.....        .......+.|.+.....++...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            444444433334446788999999999 66 348999999988753211        11122334555655555567799


Q ss_pred             EEEEEcCCCce
Q psy17058        344 KCIGKNSAGTE  354 (471)
Q Consensus       344 ~C~a~n~~g~~  354 (471)
                      +|.|.+.....
T Consensus        82 sC~V~H~~l~~   92 (100)
T cd07699          82 TCEVTHEGLSS   92 (100)
T ss_pred             EEEEEecCCCC
Confidence            99999876433

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.10  E-value=4.1e-05  Score=59.28  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             ccEEecCCCcEEEEEEEeecC----CCeEEEEeC---Ccc---CC---C--------cc--cc----cccCceeEEEEee
Q psy17058        282 EYVSVRPGEPLTLECEATGRP----MPTVSWVKY---IAP---FD---R--------NL--ER----DELTSRAVYTIAS  334 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p----~~~i~W~~~---~~~---~~---~--------~~--~~----~~~~~~~~l~i~~  334 (471)
                      ..+.+.+|++++|.|.....+    ...+.|++.   +..   +-   .        ..  +.    .......+|.|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            356788999999999986533    236999752   111   00   0        00  00    0122456899999


Q ss_pred             cCCCCCeEEEEEEEcCCCc
Q psy17058        335 VRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ++.+|+|.|.|.+.|..+.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CChhhCEEEEEEEEeCCCC
Confidence            9999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.09  E-value=1.6e-05  Score=60.71  Aligned_cols=68  Identities=24%  Similarity=0.374  Sum_probs=47.7

Q ss_pred             cEEecCCCcEEEEEEEeecC-CCeEEEEeCCc--cCC----------C----cccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRP-MPTVSWVKYIA--PFD----------R----NLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~--~~~----------~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+.+.+|++++|.|.+.+.. ...+.|+|...  ...          .    ............|.|.+++.+|+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C   88 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC   88 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence            46789999999999997655 45799997532  110          0    0111112244679999999999999999


Q ss_pred             EEEcC
Q psy17058        346 IGKNS  350 (471)
Q Consensus       346 ~a~n~  350 (471)
                      .+.+.
T Consensus        89 a~~~~   93 (106)
T cd04980          89 QQYGT   93 (106)
T ss_pred             EEeCC
Confidence            98764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.09  E-value=1.7e-05  Score=60.64  Aligned_cols=60  Identities=20%  Similarity=0.386  Sum_probs=42.6

Q ss_pred             eecCCCcEEEEee-CC-CCCCeEEEEeCCCCC--C---------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        102 SAPEGSQVTIECK-SN-DPSATIKWSKDNQEQ--L---------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~--~---------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      .+.+|++|+|.|. .. .....+.||+.....  .                     ..+..       ....|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            5889999999998 43 334579999984321  0                     00110       123699999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.05  E-value=3.8e-05  Score=55.45  Aligned_cols=63  Identities=16%  Similarity=0.353  Sum_probs=43.2

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce-------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-------VYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ++|.|.+.+++|.+.|+|++++..+.......       .+...+.|.|.....++...|+|++.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            68999997778999999999987654322111       1111234555555667778999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.05  E-value=1.9e-05  Score=56.97  Aligned_cols=62  Identities=16%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        292 LTLECEATG-RPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +.|.|.+.| +|.+.++|+++|..+......       ......+.|.+.....++...|+|+|.|..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999987 777899999999987643210       11123456666665566777999999997554

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.05  E-value=3.3e-05  Score=55.75  Aligned_cols=63  Identities=22%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE------VYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      +.|.|.+.+++|.+.++|+++++.+.......      .+...+.|.+.....++.+.|+|++.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            68999997778999999999987654221111      1111334556555666778999999987544

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.03  E-value=3.9e-05  Score=57.51  Aligned_cols=74  Identities=26%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             CCcEEEEEEEeecCCC-eEEEEeCCccCC---------------Cccc-----ccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058        289 GEPLTLECEATGRPMP-TVSWVKYIAPFD---------------RNLE-----RDELTSRAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~-~i~W~~~~~~~~---------------~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      |++++|.|........ .+.|++......               ....     ........+|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999997644333 699998532100               0000     011234678999999999999999998


Q ss_pred             E-cCCCceEEEEEEEE
Q psy17058        348 K-NSAGTEEKVITVAV  362 (471)
Q Consensus       348 ~-n~~g~~~~~~~l~V  362 (471)
                      . .+.|..+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 56788888888877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.03  E-value=5.3e-05  Score=57.03  Aligned_cols=72  Identities=19%  Similarity=0.327  Sum_probs=49.2

Q ss_pred             cEEEEEEEeecC---CCeEEEEeCCcc-----CC-----------C----cccc--cccCceeEEEEeecCCCCCeEEEE
Q psy17058        291 PLTLECEATGRP---MPTVSWVKYIAP-----FD-----------R----NLER--DELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       291 ~v~l~C~~~g~p---~~~i~W~~~~~~-----~~-----------~----~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      +++|.|.....+   ...+.|++....     +.           .    ....  .......+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            688999986433   237899984321     00           0    0000  012246789999999999999999


Q ss_pred             EEEc-CCCceEEEEEEEE
Q psy17058        346 IGKN-SAGTEEKVITVAV  362 (471)
Q Consensus       346 ~a~n-~~g~~~~~~~l~V  362 (471)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 7787777888876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.02  E-value=2.7e-05  Score=60.87  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=46.0

Q ss_pred             CCceeecCCCcEEEEee-CCC------CCCeEEEEeCCCCC---C-----C----------CCcc-------cCcEEEEc
Q psy17058         98 PRQQSAPEGSQVTIECK-SND------PSATIKWSKDNQEQ---L-----P----------PNMI-------AGETLIIN  145 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~------p~~~v~W~~~~~~~---~-----~----------~~~~-------~~~~L~i~  145 (471)
                      |..+.+.+|++|+|.|. ...      ....+.||+.....   .     .          ++..       ...+|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            66788999999999998 211      13569999984221   0     0          1100       23579999


Q ss_pred             CCCCCCCeEEEEEEEec
Q psy17058        146 GITKADEGVYICSIQNA  162 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~  162 (471)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.02  E-value=5.2e-05  Score=61.87  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             EEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCC----------C----ccc-ccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058        284 VSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD----------R----NLE-RDELTSRAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~----------~----~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      +.+.+|++++|.|... +...+.++|.|..+.+.          .    +.. +........|+|.+++.+|+|.|+|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4788999999999984 55567899999744322          1    011 122235678999999999999999988


Q ss_pred             Ec-CCC-ceEEEEEEEEecCC
Q psy17058        348 KN-SAG-TEEKVITVAVEHRP  366 (471)
Q Consensus       348 ~n-~~g-~~~~~~~l~V~~~p  366 (471)
                      .- +.| ..+....|.|....
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EecCCCCCceeEEEEEEEchh
Confidence            74 456 77888889988754

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.01  E-value=3.5e-05  Score=60.02  Aligned_cols=67  Identities=16%  Similarity=0.391  Sum_probs=48.2

Q ss_pred             cEEecCCCcEEEEEEEee--cCCCeEEEEeCC--ccCC-------------------CcccccccC--ceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATG--RPMPTVSWVKYI--APFD-------------------RNLERDELT--SRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g--~p~~~i~W~~~~--~~~~-------------------~~~~~~~~~--~~~~l~i~~~~~  337 (471)
                      .+.+.+|++++|.|.+.+  .+...+.|++..  ....                   .........  ....|+|.+++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            467889999999999987  566789999852  2110                   000111112  467899999999


Q ss_pred             CCCeEEEEEEEc
Q psy17058        338 SDAGQYKCIGKN  349 (471)
Q Consensus       338 ~d~G~Y~C~a~n  349 (471)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999865

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.00  E-value=6.9e-05  Score=58.28  Aligned_cols=72  Identities=22%  Similarity=0.394  Sum_probs=46.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCC---CCeEEEEeCCCC-C--------------C-cC----CCceEEe----eeceEEEe
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP---SPTQTWIRPDND-G--------------K-FG----PDVEVYQ----ELGVLRFN  241 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~-~--------------~-~~----~~~~~~~----~~~~l~i~  241 (471)
                      ....+.+|+.++|.|......+   ...+.|++.... .              . ..    .+..+..    ....|.|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            3456789999999998843322   246999864321 0              0 01    1111111    13579999


Q ss_pred             ccCCCCCeEEEEEEEcCCC
Q psy17058        242 NIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~  260 (471)
                      +++.+|+|.|.|.+.+...
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eCCcccCEEEEEEEEeCCC
Confidence            9999999999999997644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.00  E-value=2.5e-05  Score=58.71  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=46.1

Q ss_pred             EecCCCcEEEEEEEeec--CCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        285 SVRPGEPLTLECEATGR--PMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~--p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+|++++|.|...+.  ....+.|++....  ..              .............|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998764  4457999985321  11              011111122456799999999999999999


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.00  E-value=5.3e-05  Score=57.70  Aligned_cols=77  Identities=21%  Similarity=0.335  Sum_probs=53.7

Q ss_pred             CCCcEEEEEEEeecC-------CCeEEEEeCC--ccCC----------------C---cccc---cccCceeEEEEeecC
Q psy17058        288 PGEPLTLECEATGRP-------MPTVSWVKYI--APFD----------------R---NLER---DELTSRAVYTIASVR  336 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p-------~~~i~W~~~~--~~~~----------------~---~~~~---~~~~~~~~l~i~~~~  336 (471)
                      .|++++|.|...-.|       .+.+.|.+..  ....                .   ....   .......+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378899999965322       3589998752  1110                0   0000   011356799999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        337 ESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      .+|+|.|.|.+.......+..+.|.|..
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999877778888888864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.99  E-value=6.9e-05  Score=55.44  Aligned_cols=57  Identities=23%  Similarity=0.496  Sum_probs=38.7

Q ss_pred             CcEEEEee--CCCCCCeEEEEeCCCCC--------------C----CCCcc------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058        107 SQVTIECK--SNDPSATIKWSKDNQEQ--------------L----PPNMI------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus       107 ~~v~l~C~--~~~p~~~v~W~~~~~~~--------------~----~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      +.++|.|.  ......+|+|.|..+..              +    .++..      .+.+|.|.|++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46788898  33345678898863210              0    01111      35799999999999999999997


Q ss_pred             ecC
Q psy17058        161 NAQ  163 (471)
Q Consensus       161 ~~~  163 (471)
                      ...
T Consensus        81 t~P   83 (96)
T cd05889          81 TYP   83 (96)
T ss_pred             eCC
Confidence            653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.97  E-value=3.6e-05  Score=57.87  Aligned_cols=63  Identities=24%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             eeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCC--------------CCCcc-------cCcEEEEcCCCCCCCeEEEE
Q psy17058        101 QSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQL--------------PPNMI-------AGETLIINGITKADEGVYIC  157 (471)
Q Consensus       101 ~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~--------------~~~~~-------~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      +.+.+|++|+|.|. .. .....+.|+|......              ..+..       ....|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46889999999998 33 3566799999832210              01111       23479999999999999999


Q ss_pred             EEEecC
Q psy17058        158 SIQNAQ  163 (471)
Q Consensus       158 ~~~~~~  163 (471)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.93  E-value=0.03  Score=64.11  Aligned_cols=279  Identities=13%  Similarity=0.104  Sum_probs=159.4

Q ss_pred             eecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEE--EecCCceeeeeEEEEEeec
Q psy17058        102 SAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSI--QNAQGNVFQDYASIQVDKR  178 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~--~~~~~~~~~~~~~l~v~~~  178 (471)
                      .+..|..+.|.-. ...-...+.|..+++.....    .. .   ..+..+.|.|+-..  .|..+. ...+..+.|+  
T Consensus      1796 ~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g----k~-v---~~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQ-- 1864 (2740)
T TIGR00864      1796 FFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG----KH-A---CMTFPDAGTFAIRLNASNAVSG-KSASREFFAE-- 1864 (2740)
T ss_pred             ceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc----ce-e---EEecCCCeEEEEEEEEEcccCc-ceeeeeEEEE--
Confidence            3556777777666 33334578887774432211    11 1   15678999998875  566655 5555555555  


Q ss_pred             cCC-eeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEE--EE
Q psy17058        179 EMP-RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC--IA  255 (471)
Q Consensus       179 ~~p-~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~  255 (471)
                      ++. .+.+.. ....+..|+.++|.+.+ .......+.|...+......      ..+.+ ..+  .....|.|..  .+
T Consensus      1865 e~I~~L~L~a-s~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGdgs~~~~------t~~~t-~~H--sY~~~G~Y~VtV~A 1933 (2740)
T TIGR00864      1865 EPIFGLELKA-SKKIAAIGEKVEFQILL-AAGSAVNFRLQIGGAAPEVL------QPGPR-FSH--SFPRVDDHMVNLRA 1933 (2740)
T ss_pred             EecceEEEec-ccccccCCCEEEEEEEe-cCCCceEEEEEeCCCCceee------cCCCe-EEe--ecCCCCcEEEEEEE
Confidence            333 233332 23356789999999988 44457899998876542211      00111 111  1223466655  45


Q ss_pred             EcCCCceEEEEEEEEEeCC-ceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEee
Q psy17058        256 ENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS  334 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~~~p-~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~  334 (471)
                      .|..+.....+.+.|..+- -+.+.......+..|+..+|.-.+....+..+.|+..-..+............-++..  
T Consensus      1934 ~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~-- 2011 (2740)
T TIGR00864      1934 KNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA-- 2011 (2740)
T ss_pred             EeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc--
Confidence            6777777767777776542 2222221111256799999998886555567999865332221111001111122222  


Q ss_pred             cCCCCCeEEEE--EEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecC
Q psy17058        335 VRESDAGQYKC--IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP  412 (471)
Q Consensus       335 ~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~  412 (471)
                         ...|.|+.  .|.|..|.......|.|+.+.                                              
T Consensus      2012 ---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i---------------------------------------------- 2042 (2740)
T TIGR00864      2012 ---EAAGLLEIQLGAFNALGAENITLQLEAQDAL---------------------------------------------- 2042 (2740)
T ss_pred             ---CCCcEEEEEEEEEcccCcccccEEEEEEehe----------------------------------------------
Confidence               36787775  566888988877888887652                                              


Q ss_pred             CeeEEcCCeeeeeCCCeEEEEEEecccCC-ceEEEecC-CCCC
Q psy17058        413 PRITLRPVRQTVKPGDIANIRCSAIGATP-ISIRWQPL-QGYF  453 (471)
Q Consensus       413 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~-g~~l  453 (471)
                      -...+.........+..+.|.|.+...+. ..+.|-++ |...
T Consensus      2043 ~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~ 2085 (2740)
T TIGR00864      2043 MDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAG 2085 (2740)
T ss_pred             eeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCc
Confidence            11222222345566899999999976553 58899776 5553

Note: this model has been restricted to the amino half because for technical reasons.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.91  E-value=0.00015  Score=55.34  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.6

Q ss_pred             ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      ...+|.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            568999999999999999999999998889999998864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.91  E-value=5.5e-05  Score=55.91  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CCCcEEEEEEEee-cCC-CeEEEEeCCccCCCcc--------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        288 PGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNL--------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .++.+.|.|.+.| +|. ..++|+++|..+....        ........+.|.+......+...|+|.|.+.....+.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~   91 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED   91 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence            4566999999999 565 4899999998863221        1111222344555554455667999999997765443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.91  E-value=3.9e-05  Score=59.42  Aligned_cols=81  Identities=22%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             ccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccC-----C----C--------c------ccccccCceeEEEEeecCC
Q psy17058        282 EYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPF-----D----R--------N------LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~-----~----~--------~------~~~~~~~~~~~l~i~~~~~  337 (471)
                      ..+.+.+|+++.|.|... ......+.|++.....     .    .        .      ..........+|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            346788999999999998 3444589999854310     0    0        0      0001123456899999999


Q ss_pred             CCCeEEEEEEEcC-CCceEEEEEEEE
Q psy17058        338 SDAGQYKCIGKNS-AGTEEKVITVAV  362 (471)
Q Consensus       338 ~d~G~Y~C~a~n~-~g~~~~~~~l~V  362 (471)
                      +|+|.|.|.+... .......+.|.|
T Consensus        89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   89 SDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999987 223344455544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.91  E-value=0.00013  Score=55.74  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=29.4

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      .+.+|.|.+++.+|+|.|.|.+.+.... ......|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            3579999999999999999999887655 4444555543

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.90  E-value=6.6e-05  Score=54.13  Aligned_cols=62  Identities=15%  Similarity=0.285  Sum_probs=43.6

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ++|.|.+.+++|.+.++|+|++..+......       ..+...+.|.+......+...|+|++.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            6899999778899999999999874322111       1122234577766666778899999988653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.89  E-value=0.0001  Score=56.15  Aligned_cols=76  Identities=17%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             CCeEEEEEEccCC------CCCCeEEEEeCC--CCC-----------------CcCCCceEEe-----eeceEEEeccCC
Q psy17058        196 GDRADIQCVLEAG------EPSPTQTWIRPD--NDG-----------------KFGPDVEVYQ-----ELGVLRFNNIAT  245 (471)
Q Consensus       196 g~~~~L~C~~~~~------~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~-----~~~~l~i~~~~~  245 (471)
                      |++++|.|.....      ...+.+.|.|..  ...                 ....+..+..     ...+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            7889999986311      123689998752  110                 0112233322     245799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        246 GDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +|+|.|.|.+..........+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999876667777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.88  E-value=5.9e-05  Score=57.81  Aligned_cols=84  Identities=21%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc----c-----cccCceeEEEEeecCCCC-Ce
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE----R-----DELTSRAVYTIASVRESD-AG  341 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~----~-----~~~~~~~~l~i~~~~~~d-~G  341 (471)
                      |.+.+.++.......++.++|.|.+.| +|.. .+.|++++..+.....    .     ......+.|.|......+ ..
T Consensus         3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~   82 (115)
T cd05769           3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN   82 (115)
T ss_pred             CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence            444444333233445778999999999 5653 8999999987653211    0     112233455565555444 45


Q ss_pred             EEEEEEEcCCCceEEE
Q psy17058        342 QYKCIGKNSAGTEEKV  357 (471)
Q Consensus       342 ~Y~C~a~n~~g~~~~~  357 (471)
                      .|+|.+.+........
T Consensus        83 ~ytC~V~H~g~~~~~~   98 (115)
T cd05769          83 TFTCIVQFYGGTDTDK   98 (115)
T ss_pred             eEEEEEEEeCCcccee
Confidence            9999999987666544

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.88  E-value=4.5e-05  Score=57.39  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=44.5

Q ss_pred             ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc----c-c------cccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL----E-R------DELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~----~-~------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +..|..++|.|.+.| +|.. .+.|+++|+.+....    . .      ......+.|.+..-...+...|+|.|.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            345788999999999 5543 789999998764321    0 0      1122234455544444566689999998754


Q ss_pred             ce
Q psy17058        353 TE  354 (471)
Q Consensus       353 ~~  354 (471)
                      ..
T Consensus        93 ~~   94 (102)
T cd05768          93 PL   94 (102)
T ss_pred             Cc
Confidence            43

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.88  E-value=0.00013  Score=54.86  Aligned_cols=68  Identities=19%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-------------CcCCCceEEe----eeceEEEeccCCCCCeEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-------------KFGPDVEVYQ----ELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-------------~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      .+.+|++++|.|..........+.|+|.....             ....++.+..    ....|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            56799999999998433456689999865321             1122333321    124699999999999999999


Q ss_pred             EEcCC
Q psy17058        255 AENSA  259 (471)
Q Consensus       255 ~~~~~  259 (471)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            97653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.86  E-value=7.5e-05  Score=58.01  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=45.7

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCC--------------------CCCcc----c---CcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQL--------------------PPNMI----A---GETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~--------------------~~~~~----~---~~~L~i~~  146 (471)
                      +|....+.+|++|+|.|. ...  ....+.|||......                    .++..    .   ...|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            466788999999999998 322  245699999732111                    01111    1   12699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy17058        147 ITKADEGVYICSIQN  161 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~  161 (471)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.84  E-value=0.11  Score=59.81  Aligned_cols=277  Identities=11%  Similarity=0.152  Sum_probs=164.7

Q ss_pred             EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEE--EecCCceeeeeE
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSI--QNAQGNVFQDYA  171 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~--~~~~~~~~~~~~  171 (471)
                      .+......+..|+.|.|.-. .......++|..+++......   ...+   .-+....|.|...+  .|..+. ...+.
T Consensus      1701 ~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s---~p~~---tHtf~~~G~y~VtVta~N~vss-~~~s~ 1773 (2740)
T TIGR00864      1701 MLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS---EPFM---SHSFPSAGLHLVTMKAFNELGS-ANASE 1773 (2740)
T ss_pred             EEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC---CCce---EEEccCCceEEEEEEEEccccc-cceeE
Confidence            33334445677999999887 666778999998855432111   1101   11245678887765  566665 44344


Q ss_pred             EEEEeeccCCe-eeecCCC---ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCC
Q psy17058        172 SIQVDKREMPR-IRIHPNA---SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD  247 (471)
Q Consensus       172 ~l~v~~~~~p~-~~~~~~~---~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  247 (471)
                      .|.|.  ++.. +.+....   ...+..|..+.+.-.+..|. ...+.|..++..-.....         .   ..+..+
T Consensus      1774 ~V~Vq--epV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~---------v---~~Tf~~ 1838 (2740)
T TIGR00864      1774 EVDVQ--EPISGLKIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKH---------A---CMTFPD 1838 (2740)
T ss_pred             EEEEE--eccccceEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccce---------e---EEecCC
Confidence            44443  3221 1221111   11345678888877763333 358888887554121111         0   134567


Q ss_pred             CeEEEEE--EEcCCCceEEEEEEEEEeCCc-eeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccccc
Q psy17058        248 EGKYTCI--AENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL  324 (471)
Q Consensus       248 ~G~Y~C~--~~~~~~~~~~~~~l~V~~~p~-~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~  324 (471)
                      .|.|+-.  |.|..+....+..+.|+.+.. +.+.. ....+..|+.++|.+.+...+..++.|...+..-...      
T Consensus      1839 aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~------ 1911 (2740)
T TIGR00864      1839 AGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL------ 1911 (2740)
T ss_pred             CeEEEEEEEEEcccCcceeeeeEEEEEecceEEEec-ccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee------
Confidence            8999775  568888778888888887663 33332 2336778999999999887777789998765331110      


Q ss_pred             CceeEEEEeecCCCCCeEE--EEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCC
Q psy17058        325 TSRAVYTIASVRESDAGQY--KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS  402 (471)
Q Consensus       325 ~~~~~l~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  402 (471)
                      ....+  +.. +....|.|  +-.|.|..+.....+.+.|..+-                                    
T Consensus      1912 t~~~t--~~H-sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V------------------------------------ 1952 (2740)
T TIGR00864      1912 QPGPR--FSH-SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV------------------------------------ 1952 (2740)
T ss_pred             cCCCe--EEe-ecCCCCcEEEEEEEEeccceeeeeEEEEEEEec------------------------------------
Confidence            01111  111 12233444  56778999998888888876541                                    


Q ss_pred             cceEEeeecCCeeEEcCCee-eeeCCCeEEEEEEecccCCceEEEecC
Q psy17058        403 NASISCSVEPPRITLRPVRQ-TVKPGDIANIRCSAIGATPISIRWQPL  449 (471)
Q Consensus       403 ~~~y~c~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~v~W~~~  449 (471)
                                .-+.+...-. .+..|+...|.-.+...-+..+.|+++
T Consensus      1953 ----------~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864      1953 ----------RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred             ----------cceEecCCcccceecCceEEEEEEEecCCceEEEEEee
Confidence                      2232222211 267899999999998555678999866

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.81  E-value=0.002  Score=60.11  Aligned_cols=78  Identities=18%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCC---ceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEe
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAG---KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK  310 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~  310 (471)
                      .|.|.+++..++|.|+-++.+...   .....++|.+...|.+.+.+.   .+.+|+...-.|.+..+-++   .+.|++
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            499999999999999988754322   245667788888888777653   57889999999999874433   699999


Q ss_pred             CCccCCC
Q psy17058        311 YIAPFDR  317 (471)
Q Consensus       311 ~~~~~~~  317 (471)
                      |+..+..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9888764

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.81  E-value=0.00026  Score=52.40  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             CeEEEEEEccCCCCCCeEEEEeCCCC----C-------------CcCCCceEEe---eeceEEEeccCCCCCeEEEEEEE
Q psy17058        197 DRADIQCVLEAGEPSPTQTWIRPDND----G-------------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       197 ~~~~L~C~~~~~~p~~~v~W~~~~~~----~-------------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      +.++|.|..........++|.|....    +             +...+..+..   .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46889998843334457899886431    0             0112222221   24689999999999999999996


Q ss_pred             c-CCCceEEEEE
Q psy17058        257 N-SAGKEVMNAY  267 (471)
Q Consensus       257 ~-~~~~~~~~~~  267 (471)
                      . +.|..+..+.
T Consensus        81 t~P~g~~~~~i~   92 (96)
T cd05889          81 TYPQGSWEKVIE   92 (96)
T ss_pred             eCCCCCeEEEEE
Confidence            5 4555554443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.80  E-value=0.00014  Score=51.35  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             EEEEEEEee-cCC-CeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        292 LTLECEATG-RPM-PTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       292 v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      ++|.|.+.| +|. .++.|+++|+.+.....        .......+.|.|.....++...|+|.|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            689999999 465 48999999986432211        11122334566655566777899999988643

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.79  E-value=0.00017  Score=55.07  Aligned_cols=69  Identities=13%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             eEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-ce------EEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        192 TFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-VE------VYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ....|+.++|.|.+.+.+|. ..++|+|||..+..... ..      .+...+.|.+..-..+....|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence            34578889999999776775 69999999987532111 10      111233455554333333469999998653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00096 Ig Immunoglobulin domain

Probab=97.79  E-value=0.00013  Score=50.52  Aligned_cols=61  Identities=38%  Similarity=0.743  Sum_probs=46.9

Q ss_pred             EEEEEEEeecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        292 LTLECEATGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +.|.|.+.+.+...+.|++++.......      ..........|.|.++...|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            4689999886777999999876654322      223345667899999999999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.79  E-value=0.0025  Score=58.75  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeC
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKY  311 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~  311 (471)
                      .|.|..++...+|.|+-..-+..+.  ....++|..+.+|.+.+.+.   .+.+|+...-.|.+..+-++   .+.|++|
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4899999999999999997765553  34557777778888887754   57789999999999874443   6999999


Q ss_pred             CccCC
Q psy17058        312 IAPFD  316 (471)
Q Consensus       312 ~~~~~  316 (471)
                      +..+.
T Consensus       260 g~~V~  264 (466)
T PHA03270        260 GDEVF  264 (466)
T ss_pred             Ccccc
Confidence            99875

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.77  E-value=0.00044  Score=51.20  Aligned_cols=66  Identities=21%  Similarity=0.266  Sum_probs=43.0

Q ss_pred             ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--cc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--RD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +..|+.++|.|.+.| +|.. +++|+++|+.+.....  ..      .....+.|.+   ..++...|+|.+.+.....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~~   86 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQE   86 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCCC
Confidence            346889999999999 5554 7999999988654311  00      1111223333   3445669999999976543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.75  E-value=0.0026  Score=59.23  Aligned_cols=114  Identities=14%  Similarity=0.179  Sum_probs=75.6

Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeC
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKY  311 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~  311 (471)
                      .|.|..++...+|.|+-+..+..+.  ....+.+....+|.+.+.+.   .+.+|+...-.|.+..+-++   .+.|++|
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4999999999999999887555443  34455555577888877753   57889999999999874433   6999999


Q ss_pred             CccCC-Ccc-cccc-------cCceeEEEEeecC-CCCCeEEEEEEEcCCCc
Q psy17058        312 IAPFD-RNL-ERDE-------LTSRAVYTIASVR-ESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       312 ~~~~~-~~~-~~~~-------~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~  353 (471)
                      +.++. ... ....       ....++|++.... .+..=..+|.+......
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~  327 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE  327 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence            99887 221 1111       1222344444432 22333789998754443

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.72  E-value=0.00053  Score=50.59  Aligned_cols=63  Identities=22%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      ..++..+|.|.+.| +|.. .++|.++|..+.....        .......+.|.+.   .++...|+|.+.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence            34667899999999 6644 7999999988754211        0111222344443   3455699999998654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.71  E-value=6e-05  Score=56.59  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEE
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y  251 (471)
                      |.+.+.++.......++.++|.|.+.+.+| ...++|+++|..+....   ...     .+...+.|.+..-...+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            444444444434446788999999966677 57999999998753211   000     111123455555554567899


Q ss_pred             EEEEEcCCC
Q psy17058        252 TCIAENSAG  260 (471)
Q Consensus       252 ~C~~~~~~~  260 (471)
                      +|++.+...
T Consensus        82 sC~V~H~~l   90 (100)
T cd07699          82 TCEVTHEGL   90 (100)
T ss_pred             EEEEEecCC
Confidence            999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.71  E-value=0.00051  Score=50.90  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=39.5

Q ss_pred             CCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc--cccccCceeEE---EEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL--ERDELTSRAVY---TIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~--~~~~~~~~~~l---~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ++.+.|.|.+.| +|.. .++|+++++.+....  .......++++   ..-.+...+...|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            778999999999 4554 899999986332111  00011111111   12233445788999999987543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.71  E-value=7.8e-05  Score=56.61  Aligned_cols=59  Identities=24%  Similarity=0.501  Sum_probs=42.2

Q ss_pred             eecCCCcEEEEee-CCCCCCeEEEEeCCCC--CCC---------CC------------cc-----cCcEEEEcCCCCCCC
Q psy17058        102 SAPEGSQVTIECK-SNDPSATIKWSKDNQE--QLP---------PN------------MI-----AGETLIINGITKADE  152 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~--~~~---------~~------------~~-----~~~~L~i~~v~~~D~  152 (471)
                      .+.+|++|+|.|. .......+.||+....  ..+         ..            ..     ....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            4789999999998 4444567999998432  110         00            00     224799999999999


Q ss_pred             eEEEEEEE
Q psy17058        153 GVYICSIQ  160 (471)
Q Consensus       153 G~Y~C~~~  160 (471)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.71  E-value=0.00039  Score=51.16  Aligned_cols=75  Identities=15%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             ecCCCceeEEcCCeEEE-EEEccCCCCCCeEEEEeCCCCCCcCCCce-----EEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        185 IHPNASQTFIVGDRADI-QCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L-~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      +.+.....+.+|+.+.+ .|.+..+.|.+.|+|+.+..... .....     ...-.+.+.+......|...++|++.+.
T Consensus         5 ~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704           5 LSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             cCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            34444556778999999 99998999999999998744321 10000     1111335666666667788999999887


Q ss_pred             CC
Q psy17058        259 AG  260 (471)
Q Consensus       259 ~~  260 (471)
                      .-
T Consensus        84 al   85 (97)
T cd07704          84 AL   85 (97)
T ss_pred             cc
Confidence            54

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.70  E-value=7.1e-05  Score=55.89  Aligned_cols=68  Identities=19%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             EcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-c-eE------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        194 IVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-V-EV------YQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       194 ~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~-~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ..|+.++|.|.+.+..|. +.++|++++..+..... . ..      +...+.|.+......+.+.|+|++.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            368899999999544464 79999999876543321 1 11      111334666666667999999999987653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.70  E-value=0.039  Score=50.48  Aligned_cols=82  Identities=17%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             cEEecCCCcEEEEEEEe--ecCCC-eEEEEeCCccCC------------------Ccc-------cccccCceeEEEEee
Q psy17058        283 YVSVRPGEPLTLECEAT--GRPMP-TVSWVKYIAPFD------------------RNL-------ERDELTSRAVYTIAS  334 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~--g~p~~-~i~W~~~~~~~~------------------~~~-------~~~~~~~~~~l~i~~  334 (471)
                      ...+..|..+.|.|..+  |+... ...|..-+-++.                  ...       .-......++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            34677799999999976  34433 689986543322                  000       001223568999999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      ++.+..|=|+|+|....-..+...-|.|.+
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d  382 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVAD  382 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEecc
Confidence            999999999999988755555555555543

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.68  E-value=0.00025  Score=52.12  Aligned_cols=66  Identities=24%  Similarity=0.474  Sum_probs=45.9

Q ss_pred             CCcEEEEEEEe-ecCCCeEEEEeCCccCCCc-------ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        289 GEPLTLECEAT-GRPMPTVSWVKYIAPFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       289 g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      |+.+.|+|.+. ++|++.|.|+.++..+...       .........+.|.+.....++...++|.|.|..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            78999999875 4999999999998877211       011112234567777666667789999999986544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.67  E-value=0.00036  Score=51.33  Aligned_cols=75  Identities=21%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             eCCCccEEecCCCcEEE-EEEEe-ecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        278 ITPSEYVSVRPGEPLTL-ECEAT-GRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       278 ~~~~~~~~~~~g~~v~l-~C~~~-g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      +.+.....+.+|+.+.+ .|.+. |.|.++|.|+.+.........    .....-.+.|.+.....+|.-.++|.+.+..
T Consensus         5 ~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704           5 LSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             cCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            34444557788999999 89975 589999999987444321111    1112233456666666667779999999985


Q ss_pred             C
Q psy17058        352 G  352 (471)
Q Consensus       352 g  352 (471)
                      -
T Consensus        85 l   85 (97)
T cd07704          85 L   85 (97)
T ss_pred             c
Confidence            4

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.65  E-value=0.011  Score=54.19  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEE-eCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEe
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVL-TLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK  310 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~-~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~  310 (471)
                      .+.|.++...++|.|.-...+....  ....+.+.+. .+|.+.+.+.   .+..|+...-.|.+..+-++   .+.|++
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            5899999999999775555543333  2334444444 4555766653   57789999999999874444   699999


Q ss_pred             CCccCCCcccccc-c---------CceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        311 YIAPFDRNLERDE-L---------TSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       311 ~~~~~~~~~~~~~-~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +|........... .         ...++|++.+...+..=..+|.+....+..
T Consensus       285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v  338 (490)
T PHA03271        285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDM  338 (490)
T ss_pred             CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCc
Confidence            9988753321111 0         112333333332233338999998665533

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.63  E-value=0.00027  Score=55.01  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC--------------CcCCCceEEe----eeceEEEeccCCCCCeE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--------------KFGPDVEVYQ----ELGVLRFNNIATGDEGK  250 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~----~~~~l~i~~~~~~d~G~  250 (471)
                      ....+.+|++++|.|..........+.|+|.....              ....++.+..    ....|.|.+++.+|+|.
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~   86 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK   86 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            35567899999999988433345689999853211              1123343321    23469999999999999


Q ss_pred             EEEEEEcC
Q psy17058        251 YTCIAENS  258 (471)
Q Consensus       251 Y~C~~~~~  258 (471)
                      |.|.+...
T Consensus        87 Y~C~~~~~   94 (116)
T cd07706          87 YFCALSTL   94 (116)
T ss_pred             EEEEEECC
Confidence            99999753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.63  E-value=0.00028  Score=52.18  Aligned_cols=64  Identities=14%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      ...+..++|.|.+.| +|.. .++|.++|..+.......       .....+.|.+..-.  ....|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            334677999999999 5644 799999998865331100       11122333333321  2336999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.63  E-value=0.00019  Score=54.80  Aligned_cols=65  Identities=23%  Similarity=0.440  Sum_probs=44.3

Q ss_pred             EecCCCcEEEEEEEeecC-CCeEEEEeCCcc---C--C-----C------------cccc----cccCceeEEEEeecCC
Q psy17058        285 SVRPGEPLTLECEATGRP-MPTVSWVKYIAP---F--D-----R------------NLER----DELTSRAVYTIASVRE  337 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~---~--~-----~------------~~~~----~~~~~~~~l~i~~~~~  337 (471)
                      .+.+|++++|.|.+.+.. ...+.|++....   .  .     .            ..+.    ........|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            478899999999987643 347999985432   0  0     0            0000    0112245799999999


Q ss_pred             CCCeEEEEEEEc
Q psy17058        338 SDAGQYKCIGKN  349 (471)
Q Consensus       338 ~d~G~Y~C~a~n  349 (471)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.61  E-value=0.00021  Score=52.90  Aligned_cols=78  Identities=14%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEee-c-CC-CeEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATG-R-PM-PTVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~-p~-~~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      |.+.+.++.......+..++|.|.+.+ + |. ..+.|.++++. .....      .......+.|.+..-.+.....|+
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt   82 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA   82 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence            444444333334446889999999999 4 43 37999999875 21111      111223345555544455556899


Q ss_pred             EEEEcCCC
Q psy17058        345 CIGKNSAG  352 (471)
Q Consensus       345 C~a~n~~g  352 (471)
                      |.|.+...
T Consensus        83 C~V~H~~l   90 (99)
T cd04986          83 CTVTHPEG   90 (99)
T ss_pred             EEEECCCc
Confidence            99998755

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.60  E-value=0.00024  Score=52.75  Aligned_cols=70  Identities=11%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             EecCCCcEEEEEEEeec--CCC-eEEEEeCCccC-CCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        285 SVRPGEPLTLECEATGR--PMP-TVSWVKYIAPF-DRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~--p~~-~i~W~~~~~~~-~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+..|+.++|.|.+.|+  |.. .++|+|+++.. .....      .......+.|.+..-.+.+.-.|+|.|.+.....
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~   89 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT   89 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence            45668999999999998  443 79999986432 21111      1112223344444444444558999999976543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.60  E-value=0.0012  Score=48.50  Aligned_cols=66  Identities=17%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc--ccCceeEEEE---eecCCCCCeEEEEEEEcCCCc
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD--ELTSRAVYTI---ASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~--~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ..|...+|.|.+.| +|.. .++|+++|..+. .....  ......++.+   -.+..++...|+|.+.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~   85 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS   85 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence            45677799999999 5543 799999999876 32111  1112222222   233456677999999986443

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.55  E-value=0.00023  Score=54.03  Aligned_cols=65  Identities=17%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             EecCCCcEEEEEEEeecCCCeEEEEeCCcc----CC------C--cc------------cccccCceeEEEEeecCCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMPTVSWVKYIAP----FD------R--NL------------ERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~----~~------~--~~------------~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+.+|++++|.|.+.......+.|++....    ..      .  ..            ..........|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            367899999999986554457999986432    10      0  00            000113456799999999999


Q ss_pred             eEEEEEEEc
Q psy17058        341 GQYKCIGKN  349 (471)
Q Consensus       341 G~Y~C~a~n  349 (471)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>KOG1480|consensus

Probab=97.50  E-value=3.5e-05  Score=75.32  Aligned_cols=179  Identities=16%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCC----CeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCe---E
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPS----ATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEG---V  154 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~----~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G---~  154 (471)
                      .-+.|...|.+..+..|..+.|.|. ...+.    ..-.|..+..........       ......|...+.++.|   .
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence            4577888999999999999999998 33322    233465552221111111       1123344444444432   4


Q ss_pred             EEEE--EEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE
Q psy17058        155 YICS--IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY  232 (471)
Q Consensus       155 Y~C~--~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  232 (471)
                      |.|+  +....|...+..+.+.+..  .-......+..+.|..+..++|.|....+.|...+.|++++..+....+... 
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~ay--~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~-  179 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIAY--LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR-  179 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHHH--HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh-
Confidence            7665  4444443222222222221  1112222233456788899999999988899999999999887655333333 


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEE
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVL  271 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~  271 (471)
                      .....+++..+...|.|+|+|++.|-.+.. ...+.+.+.
T Consensus       180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  180 ASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            236679999999999999999999876653 334444444

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.50  E-value=0.00073  Score=52.73  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=46.7

Q ss_pred             CCceeEEcCCeEEEEEEccCCC-----CCCeEEEEeCCCCC-----C------------cCCCceEE----eeeceEEEe
Q psy17058        188 NASQTFIVGDRADIQCVLEAGE-----PSPTQTWIRPDNDG-----K------------FGPDVEVY----QELGVLRFN  241 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~-----p~~~v~W~~~~~~~-----~------------~~~~~~~~----~~~~~l~i~  241 (471)
                      +....+.+|+.++|.|......     ....+.||+.....     .            ...++.+.    .....|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3445788999999999763221     13468999864321     0            01122221    123469999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy17058        242 NIATGDEGKYTCIAENS  258 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~  258 (471)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.49  E-value=0.00094  Score=49.46  Aligned_cols=64  Identities=20%  Similarity=0.360  Sum_probs=41.4

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .++.++|.|.+.| +|.. +++|+++|.. .....        .......+.|.+..........|+|.+.+...
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~   88 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST   88 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence            4667999999999 5544 7999999987 32210        11122334455555444345689999999753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.49  E-value=0.0004  Score=53.23  Aligned_cols=83  Identities=18%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC---c------eEEeeeceEEEeccCCCC-Ce
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD---V------EVYQELGVLRFNNIATGD-EG  249 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~---~------~~~~~~~~l~i~~~~~~d-~G  249 (471)
                      |.+.+.++....+.+++.++|.|.+.+.+|. ..++|++|+..+.....   .      ..+...+.|.+......+ ..
T Consensus         3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~   82 (115)
T cd05769           3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN   82 (115)
T ss_pred             CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence            4444444433344467789999999666777 59999999866432211   1      112223346655544433 56


Q ss_pred             EEEEEEEcCCCceE
Q psy17058        250 KYTCIAENSAGKEV  263 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~  263 (471)
                      .|+|.+.+......
T Consensus        83 ~ytC~V~H~g~~~~   96 (115)
T cd05769          83 TFTCIVQFYGGTDT   96 (115)
T ss_pred             eEEEEEEEeCCccc
Confidence            99999988755443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.40  E-value=0.00074  Score=47.70  Aligned_cols=61  Identities=21%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             EEEEEEccCCCCC-CeEEEEeCCCCCCcCC-C-------ceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        199 ADIQCVLEAGEPS-PTQTWIRPDNDGKFGP-D-------VEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       199 ~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~-~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      ++|.|.+.+.+|. ..++|+|++..+.... .       ...+...+.|.|......+...|+|++.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999666676 6999999987522210 0       0011113346665556677889999998764

>cd00096 Ig Immunoglobulin domain

Probab=97.39  E-value=0.00084  Score=46.21  Aligned_cols=60  Identities=30%  Similarity=0.572  Sum_probs=43.4

Q ss_pred             EEEEEEccCCCCCCeEEEEeCCCCCCcCC------CceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP------DVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      +.|.|.+ .+.+...+.|++++.......      ..........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4689999 446778999999876533221      11122335579999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.36  E-value=0.00029  Score=51.79  Aligned_cols=72  Identities=19%  Similarity=0.377  Sum_probs=46.7

Q ss_pred             cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc-----------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI-----------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      .|...+...... |+.+.|.|.  .++|.+.++|+.+++........           ..+.|.+..-..++...++|.+
T Consensus         2 ~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~   80 (89)
T PF08205_consen    2 EITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA   80 (89)
T ss_dssp             EEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE
T ss_pred             EeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE
Confidence            344444333333 789999998  88999999999994443110000           2346777766666788899999


Q ss_pred             EecCCc
Q psy17058        160 QNAQGN  165 (471)
Q Consensus       160 ~~~~~~  165 (471)
                      .+....
T Consensus        81 ~~~~~~   86 (89)
T PF08205_consen   81 SHPALS   86 (89)
T ss_dssp             EETTCC
T ss_pred             ECCccC
Confidence            987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.35  E-value=0.00069  Score=50.04  Aligned_cols=68  Identities=10%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      .++.++|.|.+.+..|. ..++|++++..+....   ...     .+...+.|.+..-...+...|+|++.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            45668999999665675 6999999987642210   000     11223345555444456789999998875443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.34  E-value=0.00097  Score=48.19  Aligned_cols=65  Identities=23%  Similarity=0.414  Sum_probs=43.9

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..+..+.|.|.+.+ +|.. .|.|++++..+.....        .......+.|.+.   ..+...|+|.+.+.....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence            34889999999998 5644 7999999988653321        1112223344454   566669999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.29  E-value=0.0028  Score=46.88  Aligned_cols=65  Identities=20%  Similarity=0.303  Sum_probs=38.3

Q ss_pred             CCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-ce-EEeeeceE---EEeccCCCCCeEEEEEEEcCCC
Q psy17058        196 GDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-VE-VYQELGVL---RFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~~-~~~~~~~l---~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ++.++|.|.+.+..|. ..++|+++++....... .. ....++++   ....+...+.+.|+|++.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            6789999999554665 49999999852111110 01 11112221   1223334578999999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.29  E-value=0.0017  Score=48.07  Aligned_cols=69  Identities=17%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             CCcEEEEEEEe-ecCCCeEEEEeCCccCCCccc-c---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy17058        289 GEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLE-R---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV  357 (471)
Q Consensus       289 g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  357 (471)
                      .....+.|.+. |+|.++|.|+++......... .   ......+.|.+.....+|.-.|+|+|.|..-.....
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~   88 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR   88 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            34567899984 699999999997222111111 0   112234567776666667779999999987544333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.28  E-value=0.0016  Score=48.21  Aligned_cols=60  Identities=13%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             CCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058        106 GSQVTIECK--SNDPSATIKWSKDNQEQLPPNM--------IAGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       106 G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      .....+.|.  .+.|.+.|+|+++.........        ...+.|.+.....+|...|+|.+.|..-.
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            346788999  7899999999997222111111        02346777777777788999999987644

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.27  E-value=0.00098  Score=50.17  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             EEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC----Cc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        193 FIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP----DV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       193 v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~----~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      +..++.++|.|.+.+.+|. ..++|++++..+....    ..       ..+...+.|.+..-...+...|+|++.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            4457889999999555665 4899999987643211    00       1111133455544444566789999988643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.27  E-value=0.0012  Score=48.72  Aligned_cols=72  Identities=17%  Similarity=0.383  Sum_probs=45.3

Q ss_pred             CcEEEEEEEe-ecCCCeEEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        290 EPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       290 ~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      ..+.+.|.+. |.|.++|+|+++...........    .....+.|.+.....+|...|+|+|.|........+.++
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3578899876 58999999999833221111101    112245666666666677799999999875554444443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.26  E-value=0.0032  Score=46.54  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             EcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCC-CceE-Eee------eceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        194 IVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGP-DVEV-YQE------LGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       194 ~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~-~~~~-~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ..|+.++|.|.+.+.+|.. .++|++++..+.... .... ...      .+.|.+   ...+...|+|++.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCC
Confidence            3688899999996666764 999999998743320 0011 111      222333   335677999999886543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.16  E-value=0.0018  Score=47.73  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             CcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058        107 SQVTIECK--SNDPSATIKWSKDNQEQLPPNM--------IAGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       107 ~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      ..+.+.|.  .+.|.+.++|+++.........        ...+.|.+..-..+|...|+|++.|....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            45789998  7899999999998322211111        12346777666777788999999987644

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.13  E-value=0.0016  Score=43.30  Aligned_cols=52  Identities=25%  Similarity=0.501  Sum_probs=36.3

Q ss_pred             ecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058        103 APEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus       103 v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      -..|.+|+|+|....  ..+.|.++ +..+..   .+..+.+.+-. +++|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~--~~i~W~~n-~~~~~g---~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSG--DDIKWKKN-DQVSQG---SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCC--CCceEEeC-CccCCC---CCceEEeeccC-CCCceEEEEeCC
Confidence            346899999997221  12999999 444443   23456666666 899999999854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.12  E-value=0.0019  Score=43.35  Aligned_cols=49  Identities=18%  Similarity=0.382  Sum_probs=37.4

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      .+.|.|+|.+.    .+|.|++ |..+.       ...+.+|.+.....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~-------~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEIL-------EVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccc-------cccccEEeccCcccCCCcceEecCcc
Confidence            45799999652    4699999 44432       12267889999999999999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.07  E-value=0.00092  Score=44.48  Aligned_cols=52  Identities=25%  Similarity=0.452  Sum_probs=36.0

Q ss_pred             cCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      ..|.+|+|+|...+.   .+.|.+++..+..        ....+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g--------~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG--------SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCC--------CCceEEeeccC-CCCceEEEEeCCC
Confidence            358999999986522   3999999855432        22344444545 8899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.03  E-value=0.0022  Score=47.49  Aligned_cols=80  Identities=19%  Similarity=0.380  Sum_probs=46.6

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCC-CC-CeEEEEeCCCCCCcCCCce-----EEeeeceEEEeccCCCCCeEEEE
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGE-PS-PTQTWIRPDNDGKFGPDVE-----VYQELGVLRFNNIATGDEGKYTC  253 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~-p~-~~v~W~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C  253 (471)
                      |.+.+.++.......+..++|.|.+.+.+ |. ..|+|.++++.........     .+...+.|.+..-.......|+|
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC   83 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFAC   83 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEE
Confidence            44444444333444688899999995555 53 6999999986511111111     11113345555444455567999


Q ss_pred             EEEcCCC
Q psy17058        254 IAENSAG  260 (471)
Q Consensus       254 ~~~~~~~  260 (471)
                      ++.+...
T Consensus        84 ~V~H~~l   90 (99)
T cd04986          84 TVTHPEG   90 (99)
T ss_pred             EEECCCc
Confidence            9988643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.02  E-value=0.0038  Score=48.48  Aligned_cols=68  Identities=15%  Similarity=0.251  Sum_probs=44.7

Q ss_pred             ceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCC-------------------cCCCceEEeee----ceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGK-------------------FGPDVEVYQEL----GVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~-------------------~~~~~~~~~~~----~~l~i~~~~~  245 (471)
                      ...+.+|++++|.|...... ....+.|||......                   ...++......    ..|.|.+++.
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            45678999999999873222 245699998543210                   01223232211    2699999999


Q ss_pred             CCCeEEEEEEEc
Q psy17058        246 GDEGKYTCIAEN  257 (471)
Q Consensus       246 ~d~G~Y~C~~~~  257 (471)
                      +|+|.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.00  E-value=0.007  Score=44.65  Aligned_cols=62  Identities=21%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .++..+|.|.+.+.+|. ..++|.+||..+..+.   ...     .+.....|.+.   ..+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            46668999999655664 6999999987643211   000     01112234443   346679999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.00  E-value=0.0046  Score=45.86  Aligned_cols=69  Identities=10%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             eEEcCCeEEEEEEccCC-CCC-CeEEEEeCCCCCCc-CCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        192 TFIVGDRADIQCVLEAG-EPS-PTQTWIRPDNDGKF-GPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~-~p~-~~v~W~~~~~~~~~-~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      .+..|+.++|.|.+.+. +|. ..++|.|+++.... ......      +...+.|.+..-...+...|+|.+.+...
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            45568999999999555 454 58999998743111 000001      11123344444433456689999988653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.99  E-value=0.0033  Score=46.51  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=39.0

Q ss_pred             eEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-c------eEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        192 TFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-V------EVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .+..+..++|.|.+..-+|. ..++|.++|..+..+.. .      ..+...+.|.+..-.  ....|+|.+.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            34446778999999655665 58999999876432110 0      012223334444322  2446999998854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.95  E-value=0.0021  Score=46.04  Aligned_cols=57  Identities=28%  Similarity=0.529  Sum_probs=36.3

Q ss_pred             cEEEEEEEeecCCC--eEEEEeCCcc--CC------------------Ccccccc--cCceeEEEEeecCCCCCeEEEEE
Q psy17058        291 PLTLECEATGRPMP--TVSWVKYIAP--FD------------------RNLERDE--LTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       291 ~v~l~C~~~g~p~~--~i~W~~~~~~--~~------------------~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      ++.|.|.+.....+  .+.|++....  ..                  .......  .....+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            46789988754443  7889875421  00                  0000001  13457899999999999999996


Q ss_pred             E
Q psy17058        347 G  347 (471)
Q Consensus       347 a  347 (471)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>smart00406 IGv Immunoglobulin V-Type

Probab=96.95  E-value=0.0012  Score=47.28  Aligned_cols=20  Identities=30%  Similarity=0.720  Sum_probs=18.1

Q ss_pred             cEEEEcCCCCCCCeEEEEEE
Q psy17058        140 ETLIINGITKADEGVYICSI  159 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      .+|.|.+++.+|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            57999999999999999963

>PHA02633 hypothetical protein; Provisional

Probab=96.94  E-value=0.0023  Score=41.67  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      .+..|.|.++..+|+|.|.|..+|..-. ...+..++|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEe
Confidence            5668999999999999999999986655 4455555554

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.89  E-value=0.0058  Score=44.71  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             EecCCCcEEEEEEEee-cCC--CeEEEEeCCccCCCccccc------ccCceeEEEEeecCCCCCe-EEEEEEEcCC
Q psy17058        285 SVRPGEPLTLECEATG-RPM--PTVSWVKYIAPFDRNLERD------ELTSRAVYTIASVRESDAG-QYKCIGKNSA  351 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g-~p~--~~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~  351 (471)
                      .+.+|..+++.|.+.+ +|.  ..+.|+++...+.......      .......+++... .+|.| .|+|.|.-..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            4578999999999976 665  4799998776655332211      1123345666554 55555 9999987543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.87  E-value=0.0044  Score=41.60  Aligned_cols=61  Identities=13%  Similarity=0.228  Sum_probs=41.8

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                      ..++|.|.|.+     ..+|.|++ |..+....       ..+|.|.....+-.|.|.|.+++    .+....|.|++
T Consensus         5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY   65 (69)
T cd07691           5 SEGKVFLKCNG-----ATNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY   65 (69)
T ss_pred             cCceEEEEecC-----CCcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence            34689999975     25699999 55422111       45688888888999999999866    23344555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.82  E-value=0.0053  Score=46.41  Aligned_cols=64  Identities=11%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             EcCCceeecCCCcEEEEee-CCC--CC-CeEEEEeCCCCCCC----------------CCcc-------cCcEEEEcCCC
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SND--PS-ATIKWSKDNQEQLP----------------PNMI-------AGETLIINGIT  148 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~--p~-~~v~W~~~~~~~~~----------------~~~~-------~~~~L~i~~v~  148 (471)
                      +++....+..|..++|.|. ++.  .. ..+.|+|+-...++                .+..       ..-.|+|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            3455677889999999998 443  22 46899997322110                0000       33489999999


Q ss_pred             CCCCeEEEEEE
Q psy17058        149 KADEGVYICSI  159 (471)
Q Consensus       149 ~~D~G~Y~C~~  159 (471)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG0613|consensus

Probab=96.70  E-value=0.025  Score=59.65  Aligned_cols=176  Identities=14%  Similarity=0.091  Sum_probs=105.1

Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe----------------CCceeeCC--CccEEecCCCcEEEEEEEe
Q psy17058        238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT----------------LPAVTITP--SEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       238 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~----------------~p~~~~~~--~~~~~~~~g~~v~l~C~~~  299 (471)
                      ..|.+....+.+.|+|...+..+.....+...+..                ++...+..  ...+.+..+..+.+.|...
T Consensus       280 ~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~  359 (1205)
T KOG0613|consen  280 KTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALS  359 (1205)
T ss_pred             ccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccccc
Confidence            44555555666788888777665543333222221                11111111  1123566788899999999


Q ss_pred             ecCCCe-EEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCC
Q psy17058        300 GRPMPT-VSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR  374 (471)
Q Consensus       300 g~p~~~-i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  374 (471)
                      +.+.+. +.|++++.......    ..........+.|..+...+.+.|.|.|.|..|.........|...+..      
T Consensus       360 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g------  433 (1205)
T KOG0613|consen  360 GTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG------  433 (1205)
T ss_pred             CCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC------
Confidence            988885 99999765543221    1222334556788899999999999999999998765544444433200      


Q ss_pred             CCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCC--CeEEEEEEecccCC--ceEEEecCC
Q psy17058        375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPG--DIANIRCSAIGATP--ISIRWQPLQ  450 (471)
Q Consensus       375 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g--~~~~l~C~~~g~p~--~~v~W~~~g  450 (471)
                                                         ..++.+.. ....+...+  +.+.+.|.+.++|.  ..++|++++
T Consensus       434 -----------------------------------t~~~~~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~  477 (1205)
T KOG0613|consen  434 -----------------------------------TQPPKFKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG  477 (1205)
T ss_pred             -----------------------------------CCCccccc-cccccccccCCcccccccCCCCccccceeEeeccCC
Confidence                                               01222222 112333334  77888899988874  466778887


Q ss_pred             CCCCC
Q psy17058        451 GYFPS  455 (471)
Q Consensus       451 ~~l~~  455 (471)
                      -+...
T Consensus       478 ~~~s~  482 (1205)
T KOG0613|consen  478 LPLSD  482 (1205)
T ss_pred             ccccc
Confidence            66543

>PHA02633 hypothetical protein; Provisional

Probab=96.68  E-value=0.0082  Score=39.19  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ....|.|-++..+|+|.|.|..+|..-....++.|.|....
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            55678899999999999999999998888888999988753

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.66  E-value=0.012  Score=43.56  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .++.++|.|.+.+..|. ..++|+++|.. ....   ...     .+...+.|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999665665 58999999885 2210   000     11112335555443334668999998865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.66  E-value=0.009  Score=43.91  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=42.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CC-C-CCCeEEEEeCCCCCCCCCcc------cCcEEEE---cCCCCCCCeEEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SN-D-PSATIKWSKDNQEQLPPNMI------AGETLII---NGITKADEGVYICS  158 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~-~-p~~~v~W~~~~~~~~~~~~~------~~~~L~i---~~v~~~D~G~Y~C~  158 (471)
                      +|.+.+.... .+..|+..+|.|. .+ + +...++|+++ |..+.+...      .++++.+   ..+...+...|.|.
T Consensus         1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~   78 (93)
T cd05770           1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACR   78 (93)
T ss_pred             CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEE
Confidence            3555554322 2456777899999 44 3 3468999999 655442211      2222222   23456678889999


Q ss_pred             EEecC
Q psy17058        159 IQNAQ  163 (471)
Q Consensus       159 ~~~~~  163 (471)
                      +.+..
T Consensus        79 V~H~~   83 (93)
T cd05770          79 VRHNS   83 (93)
T ss_pred             EEECC
Confidence            98854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>KOG0613|consensus

Probab=96.63  E-value=0.0089  Score=62.90  Aligned_cols=251  Identities=14%  Similarity=0.015  Sum_probs=147.2

Q ss_pred             CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEee
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK  177 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~  177 (471)
                      ......+++...|.|. .....+.+.|+.+ .-........+.++.|.+....+.+.|+|...+..+. ........+..
T Consensus       237 ~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~-~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q-~~~~v~~~~~i  314 (1205)
T KOG0613|consen  237 SMSVTLEASDRKIQLTLRAPRGPYSAHILG-YLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQ-DRFKVTEEAPI  314 (1205)
T ss_pred             ccccccchhheeeeEEeecCCCchHHHHhc-chhhhcccCCCccccccccCCccccceeeecccCCcc-cceeeeEEeec
Confidence            3344667788888888 6666677777776 2221112225567778888888889999988877666 32222222211


Q ss_pred             ----cc----------CCeeeec--CCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCC--ceE--Eeeec
Q psy17058        178 ----RE----------MPRIRIH--PNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPD--VEV--YQELG  236 (471)
Q Consensus       178 ----~~----------~p~~~~~--~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~--~~~--~~~~~  236 (471)
                          ..          ++...+.  .........+..+++.|.. .+.+.+ .+.|++++........  ...  .....
T Consensus       315 ~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~  393 (1205)
T KOG0613|consen  315 GKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH  393 (1205)
T ss_pred             cccccCchhhhhhccCCccccccccccceeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCc
Confidence                00          1111111  1112334567789999988 666666 4999987665333321  111  11133


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCc------eeeCCCccEEecCCCcEEEEEEEeecCCC--eEEE
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA------VTITPSEYVSVRPGEPLTLECEATGRPMP--TVSW  308 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~------~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~i~W  308 (471)
                      .+.|..+...+.+.|.|.+.|..+.........+...+.      +............-+.+.+.|...+.+.+  .++|
T Consensus       394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt  473 (1205)
T KOG0613|consen  394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTT  473 (1205)
T ss_pred             chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEee
Confidence            577788888899999999999888765444444443221      11111111122334778889998877744  5667


Q ss_pred             EeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        309 VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      ++++................+|.+.-....++|.|.-......+
T Consensus       474 ~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  474 IKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             ccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence            77766655443333344556777777888888888655444333

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.63  E-value=0.01  Score=43.40  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             EEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCce------EEeeeceEEEeccCCCCCe-EEEEEEEcC
Q psy17058        193 FIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVE------VYQELGVLRFNNIATGDEG-KYTCIAENS  258 (471)
Q Consensus       193 v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~  258 (471)
                      +.+|..+++.|.+....|.  ..+.|++....+.......      .......+.+... ++|.| .|+|+|...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            4689999999999777776  6899998655433222111      0111234555554 56665 999999643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02982 hypothetical protein; Provisional

Probab=96.36  E-value=0.021  Score=47.27  Aligned_cols=112  Identities=15%  Similarity=0.285  Sum_probs=70.0

Q ss_pred             ceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc----------------c---------cCcEEEEcCCCCCCC
Q psy17058        100 QQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM----------------I---------AGETLIINGITKADE  152 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~----------------~---------~~~~L~i~~v~~~D~  152 (471)
                      ++....|+.|.|.|.  .+.......|+++++..+....                .         ..++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            455777999999999  4555567899987543332100                0         457999999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEc-CCeEEEEEEccCCCCCCeEEEEeCCC
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV-GDRADIQCVLEAGEPSPTQTWIRPDN  221 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~-g~~~~L~C~~~~~~p~~~v~W~~~~~  221 (471)
                      |-|+|++....+.......-+.|+...   +..      ...+ ...-.+.|-+ .+....-..|.-+|-
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~---V~~------~W~e~nNeT~V~CyV-gS~~~dvp~W~V~GV  172 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKED---ILY------VVEEHNNETIITCFV-GSKHGDVPRFIVAGI  172 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecce---EEE------EEEecCCeEEEEEEE-EeccCCCccEEEeeE
Confidence            999999987665534445555553111   110      0111 2344678988 443333238877654

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.20  E-value=0.016  Score=41.72  Aligned_cols=64  Identities=17%  Similarity=0.371  Sum_probs=41.4

Q ss_pred             cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCce--E------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVE--V------YQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~--~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .++.++|.|.+.+.+|. ..+.|++++..+.......  .      +...+.|.+.   ..+...|+|++.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            48899999999666675 4899999987643221111  1      1112234544   56667999999886543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG1480|consensus

Probab=96.17  E-value=0.0033  Score=62.11  Aligned_cols=79  Identities=28%  Similarity=0.512  Sum_probs=61.9

Q ss_pred             CCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058         98 PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      |.-..|..+..+.+.|+  .+.|.+.+.|+++ +..+.....    ....|++..+...|.|+|+|++.|..+......+
T Consensus       136 p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~-e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~  214 (909)
T KOG1480|consen  136 PVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN-EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPA  214 (909)
T ss_pred             hhhheecccccccccccCcccchhhhhhcccc-CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccce
Confidence            55667889999999999  7889999999999 555544222    5678999999999999999999998776455555


Q ss_pred             EEEEee
Q psy17058        172 SIQVDK  177 (471)
Q Consensus       172 ~l~v~~  177 (471)
                      .+.|.+
T Consensus       215 ~v~vyv  220 (909)
T KOG1480|consen  215 TVQVYV  220 (909)
T ss_pred             EEEEEE
Confidence            555543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.99  E-value=0.047  Score=41.36  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=43.6

Q ss_pred             EEecCCCcEEEEEEEeecCC---CeEEEEeCCccC-C--------------Cc----ccccccCceeEEEEeecCCCCCe
Q psy17058        284 VSVRPGEPLTLECEATGRPM---PTVSWVKYIAPF-D--------------RN----LERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~---~~i~W~~~~~~~-~--------------~~----~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      ..+..|..++|+|.+.|.-.   -.+.|.|..... +              ..    .........-+|.|.+++.+|++
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            46778999999999977433   368898853221 1              00    11122334568999999999999


Q ss_pred             EEEEEE
Q psy17058        342 QYKCIG  347 (471)
Q Consensus       342 ~Y~C~a  347 (471)
                      .|.|..
T Consensus        88 ~Y~Ca~   93 (115)
T cd05721          88 IYFCKI   93 (115)
T ss_pred             EEEEEe
Confidence            999963

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.50  E-value=0.013  Score=45.46  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=47.2

Q ss_pred             EecCCCcEEEEEEEeec-----CCCeEEEEeCCccCCCccc---------------ccccCceeEEEEeecCCCCCeEEE
Q psy17058        285 SVRPGEPLTLECEATGR-----PMPTVSWVKYIAPFDRNLE---------------RDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      ...-+++|.|.|.+...     +...+.|..++..+-....               .....++.+|.+.....- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            34568899999999741     1225999988765421100               112234566777775544 79999


Q ss_pred             EEEEcCCCceEEEEEEEEecC
Q psy17058        345 CIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       345 C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      |.|.......+..+.|..+..
T Consensus       102 CeVt~~~~ege~~i~Lk~~~~  122 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYRVV  122 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE---
T ss_pred             EEEEecCCCceEEEEEEEEEE
Confidence            999998888888888887654

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=95.45  E-value=0.16  Score=42.38  Aligned_cols=116  Identities=11%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-------------------CC--CceEEeeeceEEEeccCCCCCeE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-------------------GP--DVEVYQELGVLRFNNIATGDEGK  250 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-------------------~~--~~~~~~~~~~l~i~~~~~~d~G~  250 (471)
                      ....++++.|.|....+..-....|++++.....                   ..  ........++|+|.++..+..|-
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            4557999999999866655668899986532110                   00  11122335689999999999999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCc
Q psy17058        251 YTCIAENSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA  313 (471)
Q Consensus       251 Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~  313 (471)
                      |+|++....+.. .....|.|+....+..      ...-.....+.|-+-....+-..|.-+|-
T Consensus       115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        115 FTCEAKDAEGKEETCEKCLEIQKEDILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             eEEEEecCCCchheeheeeeEecceEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            999998866553 3355666642221111      11123345678988654444348887654

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.30  E-value=0.03  Score=48.56  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=38.5

Q ss_pred             CCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        118 PSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       118 p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      ..|.+.|...++..+.++..    ..+.|++.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            45789999998888877643    67889999999999999999987643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=95.06  E-value=0.031  Score=52.32  Aligned_cols=82  Identities=22%  Similarity=0.256  Sum_probs=63.6

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeC---CccCC--Cc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFD--RN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~---~~~~~--~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ..+..+++..++|-+.|.+.+.|+|.+-   ++.+.  .+  .......+...|.|-+....|+|.|+|.|.|..|...+
T Consensus       206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r  285 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR  285 (560)
T ss_pred             hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence            4677899999999999999999999752   22211  11  11223456778999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy17058        357 VITVAVEHR  365 (471)
Q Consensus       357 ~~~l~V~~~  365 (471)
                      .+.+.+...
T Consensus       286 dv~c~s~~g  294 (560)
T KOG4597|consen  286 DVPCSSVKG  294 (560)
T ss_pred             cceeeeecc
Confidence            988876643

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.95  E-value=0.023  Score=44.05  Aligned_cols=75  Identities=15%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             cCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCC------------Cce---EEeeeceEEEeccCCCCCeEEEEEE
Q psy17058        195 VGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGP------------DVE---VYQELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       195 ~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~------------~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      -++++.|.|.+..-    .+...+.|.+++..+-.-.            +..   +...+.+|.+...+.- .|.|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            47899999998321    1334799998776421100            000   1111334777765444 89999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy17058        256 ENSAGKEVMNAYIHV  270 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V  270 (471)
                      ..........+.|..
T Consensus       105 t~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  105 TELSREGETTIELKY  119 (130)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EecCCCceEEEEEEE
Confidence            877666666666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03283 envelope glycoprotein E; Provisional

Probab=94.53  E-value=2.7  Score=40.66  Aligned_cols=82  Identities=22%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEee------ccCCe------------eeecCCCceeEEcCCeE
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK------REMPR------------IRIHPNASQTFIVGDRA  199 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~------~~~p~------------~~~~~~~~~~v~~g~~~  199 (471)
                      ..+.|+|.+++.+++|.|+=..++..+. ......|.|..      ..+|.            +.+..-.......|+++
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~-~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf  210 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMM-KHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF  210 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCce-EEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence            4678999999999999999988875553 44444455542      00111            11111223345679988


Q ss_pred             EEEEEccCCC--C--CCeEEEEeCC
Q psy17058        200 DIQCVLEAGE--P--SPTQTWIRPD  220 (471)
Q Consensus       200 ~L~C~~~~~~--p--~~~v~W~~~~  220 (471)
                      .+.-......  +  ..++.|++-.
T Consensus       211 ~lsi~l~s~~~d~~fs~~i~Wyy~p  235 (542)
T PHA03283        211 DLSVHLESDIGDPSFSATIDWYYMN  235 (542)
T ss_pred             eEeEEEeeccCCCCceEEEEEEEec
Confidence            8866553222  2  2479998643

>PHA03282 envelope glycoprotein E; Provisional

Probab=94.17  E-value=2.7  Score=39.91  Aligned_cols=26  Identities=27%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+.+|.|.+++.+|+|.|+-.+....
T Consensus       122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~  147 (540)
T PHA03282        122 VNGTLVLREARETDSGMYVLSVSRAP  147 (540)
T ss_pred             ecceEEEeeccccCCceEEEEecCCC
Confidence            56789999999999999999875443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.11  E-value=0.11  Score=45.21  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=39.0

Q ss_pred             CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        302 PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       302 p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      ..|.+.|...++..-......+...++.|.+.+....++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            35789999876555444433456778889999999999999999998764

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03052 Hypothetical protein; Provisional

Probab=93.00  E-value=0.21  Score=33.30  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CeeeeeCCCeEEEEEEec-ccCC--ceEEEecCCCCCCCce
Q psy17058        420 VRQTVKPGDIANIRCSAI-GATP--ISIRWQPLQGYFPSHV  457 (471)
Q Consensus       420 ~~~~~~~g~~~~l~C~~~-g~p~--~~v~W~~~g~~l~~~~  457 (471)
                      ....+..|..+++.|.+. |.|.  +.|.|.-||..+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d   45 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD   45 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence            446778899999999998 4443  5889999999994443

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.84  E-value=0.76  Score=34.08  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=28.2

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      .+-.|.|..++..|+|.|.-++.+..|........|.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            56699999999999999999999988875444444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4597|consensus

Probab=92.72  E-value=0.17  Score=47.63  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             cCCceeecCCCcEEEEee-CCCCCCeEEEEeC--CCCCCCCCc---------ccCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKD--NQEQLPPNM---------IAGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~--~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      -|....+..|++..++|- .+.+.+.|+|.+.  +++.+-...         .....|.|-+....|+|.|+|.+.+..|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            355677899999999999 8999999999765  122111110         1456899999999999999999999888


Q ss_pred             ceeeeeEEEEEe
Q psy17058        165 NVFQDYASIQVD  176 (471)
Q Consensus       165 ~~~~~~~~l~v~  176 (471)
                      . ....+.+.+.
T Consensus       282 ~-~~rdv~c~s~  292 (560)
T KOG4597|consen  282 F-LRRDVPCSSV  292 (560)
T ss_pred             e-eeccceeeee
Confidence            7 5445555544

>PHA03286 envelope glycoprotein E; Provisional

Probab=92.70  E-value=8.7  Score=36.50  Aligned_cols=82  Identities=18%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc---CCe-------------eeecCCCceeEEcCCeEEE
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE---MPR-------------IRIHPNASQTFIVGDRADI  201 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---~p~-------------~~~~~~~~~~v~~g~~~~L  201 (471)
                      ..+.|+|.+++.+++|.|+=..+|..+........|.|....   +|.             +.+..........|+++.+
T Consensus       125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v  204 (492)
T PHA03286        125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA  204 (492)
T ss_pred             CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence            457899999999999999999888766534444555553221   111             1222233445568999877


Q ss_pred             EEEccCC----CCCCeEEEEeC
Q psy17058        202 QCVLEAG----EPSPTQTWIRP  219 (471)
Q Consensus       202 ~C~~~~~----~p~~~v~W~~~  219 (471)
                      .-.....    .-...+.|++-
T Consensus       205 Sv~l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        205 SVTAHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEEEeecccCCCceEEEEEEEe
Confidence            7655311    12347899864

>PHA03281 envelope glycoprotein E; Provisional

Probab=92.25  E-value=12  Score=36.48  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=48.6

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc-----CCee---------eecCCCceeEEcCCeEEEEE
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRI---------RIHPNASQTFIVGDRADIQC  203 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-----~p~~---------~~~~~~~~~v~~g~~~~L~C  203 (471)
                      ..+.|+|.+++.+++|.|+=-.+...|........|.|....     .|.+         .+..-.......|+++.|.-
T Consensus       296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v  375 (642)
T PHA03281        296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM  375 (642)
T ss_pred             cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence            456999999999999999988775555423323444454222     1211         11112233456799888777


Q ss_pred             EccCC----CCCCeEEEEeC
Q psy17058        204 VLEAG----EPSPTQTWIRP  219 (471)
Q Consensus       204 ~~~~~----~p~~~v~W~~~  219 (471)
                      .+...    .-...+.|++-
T Consensus       376 ~L~s~ihD~pFsleI~Wyy~  395 (642)
T PHA03281        376 HLQYKIHDAPFDLLLEWLYV  395 (642)
T ss_pred             EEeeeccCCCceeEEEEEEe
Confidence            66322    11247999864

>PHA03042 CD47-like protein; Provisional

Probab=92.13  E-value=0.59  Score=40.92  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=38.0

Q ss_pred             CCcEEEEeeCCC------CCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058        106 GSQVTIECKSND------PSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus       106 G~~v~l~C~~~~------p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      .+++.+.|...+      ....+.|..++......+..+..+|.+.... +-.|+|+|++.+...
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~-~l~GNYTCEv~~l~n   94 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSK-NLSGNYTCEAINKFN   94 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEeccc-cCCCceeEEEeeccc
Confidence            678999999333      3457999999443333222244567766544 448999999987544

>PHA03042 CD47-like protein; Provisional

Probab=91.32  E-value=1  Score=39.56  Aligned_cols=73  Identities=11%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             ecCCCcEEEEEEEeec-----CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        286 VRPGEPLTLECEATGR-----PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ..-++++.+.|.++.-     ....+.|..++..+-....    ...++|.+.- ...-.|+|+|+|.+...+....+.|
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~----tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN----TNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC----CcceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence            3458889999999742     2336999999877643222    1335555544 3445799999999877666666666


Q ss_pred             EEe
Q psy17058        361 AVE  363 (471)
Q Consensus       361 ~V~  363 (471)
                      .-+
T Consensus       103 k~~  105 (286)
T PHA03042        103 QYV  105 (286)
T ss_pred             EEE
Confidence            555

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.71  E-value=1  Score=32.76  Aligned_cols=63  Identities=17%  Similarity=0.455  Sum_probs=41.5

Q ss_pred             EcCCceeecCCCcEEEEee-C-----CCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         96 VTPRQQSAPEGSQVTIECK-S-----NDPSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~-----~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      +.|+...+..|+.+++.|. .     ......+.|..+ +..++....     ..+.+++.+.....+-.|-|..
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln-~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLN-GEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECS-SCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEEC-CEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            4566778999999999998 2     125568999998 557766543     3356777777666666677754

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=90.69  E-value=0.53  Score=45.55  Aligned_cols=83  Identities=24%  Similarity=0.342  Sum_probs=13.8

Q ss_pred             cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc------CCe-----------eeecCCCceeEEcCCeEE
Q psy17058        138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE------MPR-----------IRIHPNASQTFIVGDRAD  200 (471)
Q Consensus       138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~------~p~-----------~~~~~~~~~~v~~g~~~~  200 (471)
                      ..+.|.|.+++.+|+|.|+=...+..+........|.|....      .|.           +.+..........|+++.
T Consensus        87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~  166 (439)
T PF02480_consen   87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFH  166 (439)
T ss_dssp             -----------------------------------------------------------SEEEEEE--SEEE--TT--EE
T ss_pred             cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEE
Confidence            567899999999999999999887665533334444444211      111           122223334456799877


Q ss_pred             EEEEccCC--C-C--CCeEEEEeCC
Q psy17058        201 IQCVLEAG--E-P--SPTQTWIRPD  220 (471)
Q Consensus       201 L~C~~~~~--~-p--~~~v~W~~~~  220 (471)
                      |.-.+...  . +  ..++.|++-.
T Consensus       167 ~~v~l~~~~~d~~~f~~~i~W~~~~  191 (439)
T PF02480_consen  167 LSVHLQSEAHDDPPFSLEIDWYYMP  191 (439)
T ss_dssp             ---EEEEEESSS--EEEEEEEEEE-
T ss_pred             EeEEEEeccCCCCCeeEEEEEEEec
Confidence            76654211  1 1  2479998743

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.56  E-value=0.63  Score=34.49  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=31.9

Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE  363 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  363 (471)
                      ....+..|.|+.++.+|+|.|.-++++..|.. ...+.+.|-
T Consensus        66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            34566789999999999999999999999987 455777663

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.54  E-value=1.5  Score=40.33  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=17.6

Q ss_pred             cEEEEEEEee-cCCC-eEEEEeC
Q psy17058        291 PLTLECEATG-RPMP-TVSWVKY  311 (471)
Q Consensus       291 ~v~l~C~~~g-~p~~-~i~W~~~  311 (471)
                      .++|+|.|.| +|.. .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            6799999999 5543 7999999

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.53  E-value=1.1  Score=32.50  Aligned_cols=66  Identities=11%  Similarity=0.193  Sum_probs=41.0

Q ss_pred             eeEEcCCeEEEEEEccCCC----CCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGE----PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~----p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      ..+..|+.++..|.+....    ....+.|..++..++......+....+.+++.+......-.|.|...
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            3678999999999985442    34589999988864444333333333567777776666667777653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.51  E-value=2.4  Score=30.06  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=24.8

Q ss_pred             ceeEEEEeecCCCCCeEEEEEE-EcCCCceEEEEEEEE
Q psy17058        326 SRAVYTIASVRESDAGQYKCIG-KNSAGTEEKVITVAV  362 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V  362 (471)
                      ....+.......+|+|.+.|.| .+..-.......|.|
T Consensus        41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            3445677778889999999999 554444444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=89.44  E-value=1.4  Score=32.01  Aligned_cols=72  Identities=21%  Similarity=0.333  Sum_probs=44.3

Q ss_pred             cEEEEEE-EeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        291 PLTLECE-ATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       291 ~v~l~C~-~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      .+.-.|. +.|.|+++|+|.-+-.......    ......-.+.+.+-.....|.-..+|.+.+..-....++.|.|
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~v   98 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLNV   98 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEecC
Confidence            3456799 5679999999985422211111    1111223345566666777888999999997665566666543

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=89.22  E-value=2  Score=31.20  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      ..+.+.|+...|..|+++.+.|..+-+.+ .+.|.-.-.+..-.....-..+.|.|++. | ..-.|.+.-.... ....
T Consensus         4 f~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q-~~~~   80 (91)
T PF03921_consen    4 FEVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQ-SSAS   80 (91)
T ss_dssp             S-EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEE-EEEE
T ss_pred             eEEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeE-EEeE
Confidence            46788899999999999999999433333 34443220000000000224677889986 5 4667988754333 4445


Q ss_pred             EEEEEe
Q psy17058        171 ASIQVD  176 (471)
Q Consensus       171 ~~l~v~  176 (471)
                      ..|+|.
T Consensus        81 ~~ItVY   86 (91)
T PF03921_consen   81 ANITVY   86 (91)
T ss_dssp             EEEEEE
T ss_pred             EeeEEe
Confidence            555554

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>KOG1026|consensus

Probab=88.86  E-value=0.99  Score=46.18  Aligned_cols=159  Identities=17%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      .+..|..+++.|.. .+.|.+...|+.++...................+.+        ++|.+.|..+....++.+.+.
T Consensus       203 ~v~~~~~~~~~c~~-~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~  273 (774)
T KOG1026|consen  203 TVEEGSSITLKCSQ-AGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVD  273 (774)
T ss_pred             hhcccchheeeeec-ccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence            46678999999999 888999999998776533322211111111111111        889998888877767666666


Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEe---ecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEAT---GRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~---g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .++........     .++  .-.|...   +.|.+...|..++..+.....  ........-+........+.|.|+|.
T Consensus       274 ~p~~~~~~~~~-----~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~  346 (774)
T KOG1026|consen  274 LPKAEVLLCSP-----LSD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLF  346 (774)
T ss_pred             cccccccCCCC-----ccc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceee
Confidence            54333222111     011  2345543   456667889888776542111  00111002222222355678999999


Q ss_pred             EEcCCCceEEEEEEEEecCC
Q psy17058        347 GKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       347 a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +.|..|.........+...|
T Consensus       347 ~e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  347 PELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             ecccCccccccCcCccccCC
Confidence            99999988777777777665

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=88.58  E-value=21  Score=33.41  Aligned_cols=158  Identities=18%  Similarity=0.241  Sum_probs=90.8

Q ss_pred             ceeEEcCCeEEEEEEccC-CCCC-CeEEEEeCCCCCCc-----------------CCCceEEe--------eeceEEEec
Q psy17058        190 SQTFIVGDRADIQCVLEA-GEPS-PTQTWIRPDNDGKF-----------------GPDVEVYQ--------ELGVLRFNN  242 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~-~~p~-~~v~W~~~~~~~~~-----------------~~~~~~~~--------~~~~l~i~~  242 (471)
                      ...+..|..+.|.|.... ++.. ....|+-.+-++..                 ...+.+..        ..++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            334556999999998732 2333 47899865543210                 11122211        146899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCC-cEEEEEEEeec--CCCeEEEEeCCccCCCcc
Q psy17058        243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE-PLTLECEATGR--PMPTVSWVKYIAPFDRNL  319 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~  319 (471)
                      +..+..|-|+|++............|.|...-.+       ....+|. ...+.|-+...  .++.+.|..+|-......
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f-------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~  425 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFF-------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI  425 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccEEEE-------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence            9999999999999876545555555555421111       1222333 34567887654  345799998875543211


Q ss_pred             cc---------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCce
Q psy17058        320 ER---------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTE  354 (471)
Q Consensus       320 ~~---------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  354 (471)
                      ..         ...-..+.+.|.+-...| --.-.|+..-..|..
T Consensus       426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya  470 (500)
T PHA02914        426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA  470 (500)
T ss_pred             cCcccccccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence            10         011123456677666556 345677766555544

>PHA03282 envelope glycoprotein E; Provisional

Probab=86.31  E-value=29  Score=33.36  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             eceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEE
Q psy17058        235 LGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVL  271 (471)
Q Consensus       235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~  271 (471)
                      +++|.|.+++.+|+|.|+-.+......  ....+.|.|.
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            667999999999999999987543322  2333555553

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.87  E-value=12  Score=26.60  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE-cCCCceEEEEEEEE
Q psy17058        212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE-NSAGKEVMNAYIHV  270 (471)
Q Consensus       212 ~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~V  270 (471)
                      +.+.|+..+..        .......+.......+|+|.+.|.|. +..........|.+
T Consensus        27 ~~~~l~~~~~k--------~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   27 PSLFLENPGKK--------SLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEECSSCE--------EEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             hhheeeccCcc--------ccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            45666654432        23335566777888899999999994 44333444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=84.00  E-value=3.6  Score=29.90  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             eEEEEEEccCCCCCCeEEEEeCCCCCCc-----CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        198 RADIQCVLEAGEPSPTQTWIRPDNDGKF-----GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      .+.-.|.+..|.|++.|+|.-+-.....     ..+... .-.+.+.+......|.-..+|.+.+.......++.|+
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~-TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTV-TVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCE-EEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            3456899879999999999854221000     000000 0123456666777788899999988654444445444

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=83.74  E-value=3.8  Score=37.76  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=18.0

Q ss_pred             eEEEEEEccCCCCC-CeEEEEeC
Q psy17058        198 RADIQCVLEAGEPS-PTQTWIRP  219 (471)
Q Consensus       198 ~~~L~C~~~~~~p~-~~v~W~~~  219 (471)
                      .++|+|.+.+-+|. ..+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999655665 58999999

>PHA03240 envelope glycoprotein M; Provisional

Probab=83.64  E-value=1.5  Score=36.65  Aligned_cols=58  Identities=22%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEe-------CCCCCCC----------CC----------cc-----cCcEEEEcC
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSK-------DNQEQLP----------PN----------MI-----AGETLIING  146 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~-------~~~~~~~----------~~----------~~-----~~~~L~i~~  146 (471)
                      ++.+.+|+.|+|.-. ...+.-.+.|++       ++|....          ++          ..     .+++|.|.+
T Consensus        32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~  111 (258)
T PHA03240         32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH  111 (258)
T ss_pred             ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence            456889999999887 556778999999       3232110          00          00     467888999


Q ss_pred             CCCCCCeEEEE
Q psy17058        147 ITKADEGVYIC  157 (471)
Q Consensus       147 v~~~D~G~Y~C  157 (471)
                      +..+|.|+|.-
T Consensus       112 vn~sd~~nYcr  122 (258)
T PHA03240        112 LNLSDAGEYCR  122 (258)
T ss_pred             EeecCcchhhh
Confidence            99999999843

>PHA03283 envelope glycoprotein E; Provisional

Probab=81.14  E-value=34  Score=33.47  Aligned_cols=41  Identities=24%  Similarity=0.291  Sum_probs=34.4

Q ss_pred             ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ..+.|.|.+++.+++|.|+-..++..+.....+.|.|+.++
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~  172 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPP  172 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCC
Confidence            35789999999999999999999988866677888887744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	471
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		9e-16
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		9e-13
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-14
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-14
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-14
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-14
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-14
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-09
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		8e-14
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		1e-13
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		4e-07
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		1e-13
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		5e-07
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-13
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-07
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		3e-13
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		4e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		3e-13
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		4e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-12
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		4e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-12
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		3e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		2e-12
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-12
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-12
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		8e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-12
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		6e-12
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		7e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-11
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-11
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		6e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-11
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-11
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-11
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		3e-11
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		7e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-10
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-10
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-10
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-10
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		8e-10
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-09
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-09
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-09
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		4e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-09
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		5e-09
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-09
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		9e-09
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		3e-04
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-08
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		6e-08
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-07
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-07
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		2e-07
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		6e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-07
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-06
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		4e-06
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		9e-06
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		2e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-05
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		7e-05
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		7e-05
2e9w_A	489	Crystal Structure Of The Extracellular Domain Of Ki		8e-05
2ec8_A	524	Crystal Structure Of The Exctracellular Domain Of T		8e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		1e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		2e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-04
1gl4_B	98	Nidogen-1 G2PERLECAN IG3 COMPLEX Length = 98		2e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		7e-04

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 30/293 (10%)
Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
           P+ Q    G   +  C+ + DP   + W+K  +       E +  +  AG  L I  + T
Sbjct: 13  PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
             DE VY C  QN+ G +   +A + V + +      P I + P      +   R     
Sbjct: 73  PRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLK--VVERTRTATML 129
Query: 204 VLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
              +G P P  TW +   P +       ++  +  G L+  +    D+GKY C+A NSAG
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS-GALQIESSEETDQGKYECVATNSAG 188
Query: 261 ---KEVMNAYIHVLTL-PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
                  N Y+ V  + P  +I P  +  + PG  + + C A G PMP V W++     D
Sbjct: 189 VRYSSPANLYVRVQNVAPRFSILPMSH-EIMPGGNVNITCVAVGSPMPYVKWMQ--GAED 245
Query: 317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
              E D    R V  +  V+  D+  Y C+  +S G  E V  + V+  P+ G
Sbjct: 246 LTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 113/288 (39%), Gaps = 65/288 (22%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
           E PR    P   Q  + G  A   C    G+P P  TW +     N  +F   +E  +  
Sbjct: 5   EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
           G VLR   + T  DE  Y C+A+NS G+  ++A + VL         P + + P   V  
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
           R     T+ C A+G P P ++W K   P D    N    +L S A+  I S  E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILXXXXXXXXXXXXXXXXVYAVGSN 403
           +C+  NSAG                                             Y+  +N
Sbjct: 180 ECVATNSAGVR-------------------------------------------YSSPAN 196
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
             +      PR ++ P+   + PG   NI C A+G+    ++W  +QG
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW--MQG 242

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 24/224 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGN----------VFQDYASIQVDKREMPRIRIHPNASQ 191
           L I  + K+D G Y C + N   N          + ++     V     P+I +    + 
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG---VMGEYEPKIEVQFPETV 214
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGK 250
               G    ++C    G P PT  W R D  GK        ++  G+L   N    D G 
Sbjct: 215 PAEKGTTVKLEC-FALGNPVPTILWRRAD--GKPIARKARRHKSNGILEIPNFQQEDAGS 271
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV 309
           Y C+AENS GK V    +     P  V I    +V++   E +  EC+A GRP PT  W+
Sbjct: 272 YECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME--ESVFWECKANGRPKPTYRWL 329
Query: 310 KYIAPFDRNLERDEL-TSRAVYTIASVRESDAGQYKCIGKNSAG 352
           K   P    L RD +   +    I  V  SDAG Y+C+ +N  G
Sbjct: 330 KNGDPL---LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 24/224 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGN----------VFQDYASIQVDKREMPRIRIHPNASQ 191
           L I  + K+D G Y C + N   N          + ++     V     P+I +    + 
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG---VMGEYEPKIEVQFPETV 215
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGK 250
               G    ++C    G P PT  W R D  GK        ++  G+L   N    D G 
Sbjct: 216 PAEKGTTVKLEC-FALGNPVPTILWRRAD--GKPIARKARRHKSNGILEIPNFQQEDAGS 272
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV 309
           Y C+AENS GK V    +     P  V I    +V++   E +  EC+A GRP PT  W+
Sbjct: 273 YECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME--ESVFWECKANGRPKPTYRWL 330
Query: 310 KYIAPFDRNLERDEL-TSRAVYTIASVRESDAGQYKCIGKNSAG 352
           K   P    L RD +   +    I  V  SDAG Y+C+ +N  G
Sbjct: 331 KNGDPL---LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 106 GSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGET---------LIINGITKADEGVY 155
           G  V ++C+   DP  TI W K NQ+ L P  I G++         L I+ +   D GVY
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQK-NQQDLNP--IPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 156 ICSIQNAQGNVFQDYASIQVDK-----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
            CS +N       + A +++       R++  ++   N     I G  A ++C + +G P
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV--IAIEGKDAVLECCV-SGYP 249
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
            P+ TW+R +   +     + Y  LG   L  +N+   D G YTC+          +A +
Sbjct: 250 PPSFTWLRGEEVIQL--RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT 325
            VL  P     PS   +    + +  EC  +G+P+PTV+W+K    + P D      ++ 
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMD-IEFECAVSGKPVPTVNWMKNGDVVIPSDYF----QIV 362
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
             +   I  V +SD G Y+C+ +N AG  +
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAENEAGNAQ 392

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 19/190 (10%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATG-----DE 248
           G    + C  E+    P   W +       G D +  Q+L  G L   NI        DE
Sbjct: 36  GGNVLLNCSAESDRGVPVIKWKKDGLILALGMD-DRKQQLPNGSLLIQNILHSRHHKPDE 94
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
           G Y C A       +++    V+   P   ++ +E ++   G+ + L+CE  G PMPT+ 
Sbjct: 95  GLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH 154
Query: 308 WVKY---IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT------EEKVI 358
           W K    + P   +     L S A+  I+ ++  D+G Y+C  +N A T      E +++
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGAL-QISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 359 TVAVEHRPEY 368
           +    HR  Y
Sbjct: 214 SDPGLHRQLY 223

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 181 PRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWI----RPDNDGKFGPDVEVYQE 234
           PRI  HP+     IV  G+ A + C  E G P+PT  W     R + D        +   
Sbjct: 10  PRIVEHPS---DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 235 LGVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRP 288
            G L F  I  G     DEG Y C+A N  G+ V  +A + V  L          V V  
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 289 GEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRA-VYTIASVRESDAGQYKCI 346
           GEP  +EC+   G P PT+SW K  +P D   ER  +T R     I   R+SDAG+Y C+
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER--ITIRGGKLMITYTRKSDAGKYVCV 183
Query: 347 GKNSAGTEE-KVITVAVEHRPEY 368
           G N  G  E +V  + V  RP +
Sbjct: 184 GTNMVGERESEVAELTVLERPSF 206

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           I W+KDN+E  P     M   E   TL +  +TK D G Y C   N  G   +D  S Q+
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 285
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
             +E PR       S+     +    +C +  G P     W + + +     KF   +  
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 342
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
            + + VL   N++  D G YTC A N+AG    +  + V   P     P    +++ G  
Sbjct: 343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 401
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT---IASVRESDAGQYKCIGK 348
           + LECE  G P   VSW K      R+ ++ ++ S    T   I +V  +D G+Y+C   
Sbjct: 402 VHLECELQGTPPFQVSWHKDKREL-RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460
Query: 349 NSAGTEEKVITVAVEHRPEY 368
           N  G++  V ++ ++  P +
Sbjct: 461 NDVGSDTCVGSITLKAPPRF 480

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 91/263 (34%), Gaps = 61/263 (23%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYT 252
           +G+   +QC ++ G P     W +     +  P   ++    +  L  N +   D G+YT
Sbjct: 19  IGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 253 CIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP-----GEPLTLECEATGRPMPTVS 307
           C AENS G    +A   VL +    + PS    ++      G P+  EC   G     VS
Sbjct: 78  CKAENSVGAVASSA---VLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134
Query: 308 WVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
           W K   +   D NL+   + + A   I    +S  GQY C   N  GT            
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT------------ 182
Query: 366 PEYGPISPRPGADILXXXXXXXXXXXXXXXXVYAVGSNASISCSVE--PPRITLRPVRQT 423
                                               S+A ++ S    PP   L+PV   
Sbjct: 183 ----------------------------------ASSSAKLTLSEHEVPPFFDLKPVSVD 208
Query: 424 VKPGDIANIRCSAIGATPISIRW 446
           +  G+    +C   G  PI I W
Sbjct: 209 LALGESGTFKCHVTGTAPIKITW 231

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 115/289 (39%), Gaps = 23/289 (7%)
Query: 93  EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM---------IAGET 141
           +V + P Q     G      C+   +     I W   N E+L PN              T
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           L I      D G+Y C +    G   +   ++++ ++ M +    P   Q F  G+ A I
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP---QEFKEGEDAVI 120
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVE-VYQELGVLRFNNIATGDEGKYTCIAENSAG 260
            C + +  P PT  W     D     DV  +      L+   I   DEG Y C     A 
Sbjct: 121 VCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
            E+    I V+     T+   + +   +   G+ +TL C+A G P PT+SW K   P + 
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 318 NLERDEL----TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
             E DE        +  TI +V ++D  +Y CI +N AG ++  I + V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 86  YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
           + SP+  E ++     + P    V  +C  S  P+ T++W K+ +E  P + I G     
Sbjct: 15  WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
              ++I++ +  +D+G Y C ++N  G++   Y    V++    P ++    A++T  +G
Sbjct: 71  ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
              +  C + + +P P   W++    N  K GPD   Y             +E+ VL   
Sbjct: 131 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           N++  D G+YTC+A NS G    +A++ VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
           +G P+PT  W++  N  +F PD  +      Y    ++  +++   D+G YTCI EN  G
Sbjct: 41  SGTPNPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 97
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
                +  H   L  V  +P   +         +V  G  +   C+    P P + W+K+
Sbjct: 98  -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
           I      +  D L    +   A V  +               DAG+Y C+  NS G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 86  YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
           + SP+  E ++     + P    V  +C  S  P  T++W K+ +E  P + I G     
Sbjct: 15  WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
              ++I++ +  +D+G Y C ++N  G++   Y    V++    P ++    A++T  +G
Sbjct: 71  ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
              +  C + + +P P   W++    N  K GPD   Y             +E+ VL   
Sbjct: 131 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           N++  D G+YTC+A NS G    +A++ VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
           +G P PT  W++  N  +F PD  +      Y    ++  +++   D+G YTCI EN  G
Sbjct: 41  SGTPQPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 97
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
                +  H   L  V  +P   +         +V  G  +   C+    P P + W+K+
Sbjct: 98  -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
           I      +  D L    +   A V  +               DAG+Y C+  NS G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 86  YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
           + SP+  E ++     + P    V  +C  S  P  T++W K+ +E  P + I G     
Sbjct: 16  WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 71
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
              ++I++ +  +D+G Y C ++N  G++   Y    V++    P ++    A++T  +G
Sbjct: 72  ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 131
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
              +  C + + +P P   W++    N  K GPD   Y             +E+ VL   
Sbjct: 132 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           N++  D G+YTC+A NS G    +A++ VL
Sbjct: 191 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
           +G P PT  W++  N  +F PD  +      Y    ++  +++   D+G YTCI EN  G
Sbjct: 42  SGTPQPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 98
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
                +  H   L  V  +P   +         +V  G  +   C+    P P + W+K+
Sbjct: 99  -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 153
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
           I      +  D L    +   A V  +               DAG+Y C+  NS G
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 12  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++ R  P ++    A+ + +VG   +  
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
           C + + +  P   WI+    N  K+GPD   Y             +E+ VL   N+   D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+YTC+A NS G    +A++ VL  P 
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 36  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 95
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI------- 312
              ++ V+      P +        S   G  +   C+      P + W+K++       
Sbjct: 96  HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 155
Query: 313 ----APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
                P+ + L+   + +      V  I +V   DAG+Y C+  NS G
Sbjct: 156 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 10  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 69
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++ R  P ++    A+ + +VG   +  
Sbjct: 70  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
           C + + +  P   WI+    N  K+GPD   Y             +E+ VL   N+   D
Sbjct: 130 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 188
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+YTC+A NS G    +A++ VL  P 
Sbjct: 189 AGEYTCLAGNSIGISFHSAWLTVLPAPG 216

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 34  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 93
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI------- 312
              ++ V+      P +        S   G  +   C+      P + W+K++       
Sbjct: 94  HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 153
Query: 313 ----APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
                P+ + L+   + +      V  I +V   DAG+Y C+  NS G
Sbjct: 154 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 201

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 103/253 (40%), Gaps = 37/253 (14%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           I W+KDN+E  P     M   E   TL +  +TK D G Y C   N  G   +D  S Q+
Sbjct: 37  ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 93
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
             +E PR       S+     +    +C +  G P     W + + +     KF   +  
Sbjct: 94  GVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 150
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
            + + VL   N++  D G YTC A N+AG    +  + V   P     P    +++ G  
Sbjct: 151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 209
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS-----------VRESDA 340
           + LECE  G P   VSW K         ++ EL S   Y I S           V  +D 
Sbjct: 210 VHLECELQGTPPFQVSWHK---------DKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 341 GQYKCIGKNSAGT 353
           G+Y+C   N  G+
Sbjct: 261 GEYQCKASNDVGS 273

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           P   + P  S    +G+    +C +    P    TW      IRP  + K    VE    
Sbjct: 6   PFFDLKP-VSVDLALGESGTFKCHVTGTAPIKI-TWAKDNREIRPGGNYKMTL-VENTAT 62
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
           L VL+   +  GD G+YTC A N AGK+  +A + V   P           V+  E    
Sbjct: 63  LTVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 295 ECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           EC+  G P   V W K       +       + S AV  + ++   D+G Y C   N+AG
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 353 TEEKVITVAVEHRPEY----GPISPRPGADI 379
           +     ++ V+  P +     P+    GAD+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV 210

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 11  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 70
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  
Sbjct: 71  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
           C + + +  P   WI+    N  K+GPD   Y             +E+ VL   N+   D
Sbjct: 131 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 189
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+YTC+A NS G    +A++ VL  P 
Sbjct: 190 AGEYTCLAGNSIGISFHSAWLTVLPAPG 217

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 32/173 (18%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 35  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 91
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
             +  H   L  V  +P   +         S   G  +   C+      P + W+K++  
Sbjct: 92  --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 149
Query: 313 ---------APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
                     P+ + L+   + +      V  I +V   DAG+Y C+  NS G
Sbjct: 150 NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 202

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 12  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
           C + + +  P   WI+    N  K+GPD   Y             +E+ VL   N+   D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+YTC+A NS G    +A++ VL  P 
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 32/173 (18%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 36  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 92
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
             +  H   L  V  +P   +         S   G  +   C+      P + W+K++  
Sbjct: 93  --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 150
Query: 315 FDRNLERDELTSRAVYTIASVRESD---------------AGQYKCIGKNSAG 352
                  D L    V   A V  +D               AG+Y C+  NS G
Sbjct: 151 NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 12  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
           C + + +  P   WI+    N  K+GPD   Y             +E+ VL   N+   D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+YTC+A NS G    +A++ VL  P 
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGK-- 261
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 36  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 95
Query: 262 -----EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI---- 312
                +V+  + H   L A    P+   +V  G+ +   C+      P + W+K++    
Sbjct: 96  HTYHLDVVERWPHRPILQAGL--PANASTVVGGD-VEFVCKVYSDAQPHIQWIKHVEKNG 152
Query: 313 -------APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
                   P+ + L+   + +      V  I +V   DAG+Y C+  NS G
Sbjct: 153 SKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 122/302 (40%), Gaps = 47/302 (15%)
Query: 108 QVTIECKSN-DPSATIKWSKDNQE-QLPP----NMIAGETLIINGITKADEGVYICSIQN 161
           QV + C++   P AT +W  +  E +L P     ++ G  +I+N     D GVY C   N
Sbjct: 23  QVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASN 82
Query: 162 AQGNVFQDYASI------QVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
             G V    A +      +  K E   ++ H         G    + C   A  P  +  
Sbjct: 83  PVGTVVSREAILRFGFLQEFSKEERDPVKAHE--------GWGVMLPCNPPAHYPGLSYR 134
Query: 216 WIRPD------NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS---AGKEVMNA 266
           W+  +       DG+      V Q  G L        D G Y+C+A +    + K V + 
Sbjct: 135 WLLNEFPNFIPTDGRHF----VSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSK 190
Query: 267 YIHV--------LTLPAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
           +  +        L  P++    P+E  ++  G+ +TLEC A G P+P + W K     D 
Sbjct: 191 FAQLNLAAEDTRLFAPSIKARFPAETYALV-GQQVTLECFAFGNPVPRIKWRK----VDG 245
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
           +L     T+     I SV   D G Y+C  +NS G +     + V+ +PE+  +     A
Sbjct: 246 SLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA 305
Query: 378 DI 379
           DI
Sbjct: 306 DI 307

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 102/253 (40%), Gaps = 37/253 (14%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           I W+KDN+E  P     M   E   TL +  +TK D G Y C   N  G   +D  S Q+
Sbjct: 37  ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 93
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
             +  PR       S+     +    +C +  G P     W + + +     KF   +  
Sbjct: 94  GVQAPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 150
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
            + + VL   N++  D G YTC A N+AG    +  + V   P     P    +++ G  
Sbjct: 151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 209
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS-----------VRESDA 340
           + LECE  G P   VSW K         ++ EL S   Y I S           V  +D 
Sbjct: 210 VHLECELQGTPPFQVSWHK---------DKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 341 GQYKCIGKNSAGT 353
           G+Y+C   N  G+
Sbjct: 261 GEYQCKASNDVGS 273

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           P   + P  S    +G+    +C +    P    TW      IRP  + K    VE    
Sbjct: 6   PFFDLKP-VSVDLALGESGTFKCHVTGTAPIKI-TWAKDNREIRPGGNYKMTL-VENTAT 62
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
           L VL+   +  GD G+YTC A N AGK+  +A + V   P           V+  E    
Sbjct: 63  LTVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRY 119
Query: 295 ECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           EC+  G P   V W K       +       + S AV  + ++   D+G Y C   N+AG
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 353 TEEKVITVAVEHRPEY----GPISPRPGADI 379
           +     ++ V+  P +     P+    GAD+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV 210

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 28/272 (10%)
Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
           ++ P  Q+   G      C+ + +P  T+ W KD +       +    L I  + K D+G
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----LRIESVKKEDKG 402
Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
           +Y C ++N + +  +  A +++  R  P +       +T   G    ++CV   G P+P 
Sbjct: 403 MYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPE 460
Query: 214 QTWIRPDNDGKFGPDVEVYQE----------LGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            +W   + DGK   + + YQ           +  L   ++   D G Y CIA++  G   
Sbjct: 461 ISW---ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLER 321
            +A ++V  LP   I   E  ++  GE L + C   G P+ ++ W +     P +R   +
Sbjct: 518 HSAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR---K 572
Query: 322 DELTSRAVYTIASV-RESDAGQYKCIGKNSAG 352
            ++       I +V R SD   Y C+ KN  G
Sbjct: 573 QKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
           V Q  G L   +    D GKY C+  NS G E +   + V    +  I P    +V  G 
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 359
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           P    C+ TG P+ TVSW+K               S +V  I SV++ D G Y+C  +N 
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 411
Query: 351 AGTEE 355
             + E
Sbjct: 412 RESAE 416

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG---- 246
           QT + G  A   C    GEP P  TW+      K G  V   Q   V+ F++ A      
Sbjct: 17  QTGLSGGVASFVC-QATGEPKPRITWM------KKGKKVS-SQRFEVIEFDDGAGSVLRI 68
Query: 247 -------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSVRPGEPL 292
                  DE  Y C A NS G+   +A + VL         P + + P   V V  G   
Sbjct: 69  QPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKV-VEKGRTA 127
Query: 293 TLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
           T+ C A G P P +SW K   P D    N    +L S A+  I S  ESD G+Y+C+  N
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGAL-QIESSEESDQGKYECVATN 186
Query: 350 SAGT 353
           SAGT
Sbjct: 187 SAGT 190

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 27/195 (13%)
Query: 102 SAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAG-------ETLIINGITKADEG 153
           + P  + V   C  + +P+ +I W K+ +E    + I G        +L++  +  +D G
Sbjct: 134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 154 VYICSIQNAQGNVFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            Y C ++N  G++ Q Y ++ V +R    P ++    A+QT ++G   +  C + + +  
Sbjct: 194 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS-DAQ 251
Query: 212 PTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGDEGKYTCIAE 256
           P   W++    N  K GPD   Y             +EL VL  +N+   D G+YTC+A 
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 257 NSAGKEVMNAYIHVL 271
           NS G    +A++ VL
Sbjct: 312 NSIGFSHHSAWLVVL 326

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 48/181 (26%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
           AG P+P+ +W++  N  +F  +     +++  +   L   ++   D G YTC+ EN  G 
Sbjct: 148 AGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
Query: 262 -------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
                  +V+    H   L A    P+   +V  G  +   C+      P + W+K++  
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGL--PANQTAVL-GSDVEFHCKVYSDAQPHIQWLKHVEV 262
Query: 313 ---------APF------------DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
                     P+            D+ LE        V ++ +V   DAG+Y C+  NS 
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELE--------VLSLHNVTFEDAGEYTCLAGNSI 314
Query: 352 G 352
           G
Sbjct: 315 G 315

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG---- 246
           QT + G  A   C    GEP P  TW+      K G  V   Q   V+ F++ A      
Sbjct: 16  QTGLSGGVASFVC-QATGEPKPRITWM------KKGKKVS-SQRFEVIEFDDGAGSVLRI 67
Query: 247 -------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSVRPGEPL 292
                  DE  Y C A NS G+   +A + VL         P++ + P   V V      
Sbjct: 68  QPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKV-VEKARTA 126
Query: 293 TLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
           T+ C A G P P +SW K   P D    N    +L S A+  I S  ESD G+Y+C+  N
Sbjct: 127 TMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQ-IESSEESDQGKYECVATN 185
Query: 350 SAGT 353
           SAGT
Sbjct: 186 SAGT 189

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYT 252
           +V + A   C +E+  P P  +W R     K F     + +   +L   ++   D+G Y 
Sbjct: 20  LVEEVATFMCAVES-YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYC 78
Query: 253 CIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY 311
           C A N  G  V +   + V   P +T  P   V +  G    L C   G P P+VSW+K 
Sbjct: 79  CTANNGVGGAVESCGALQVKMKPKIT-RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137
Query: 312 IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE 363
            +    N  R  +       I +V++ DAGQY+C+ KNS GT   K++ + VE
Sbjct: 138 DSALREN-SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKEV 263
           +G P P  +W R   +GK   + E Y   G    L   NI   D G Y C A N AG++ 
Sbjct: 29  SGSPEPAISWFR---NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE 85
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-----DRN 318
             A++ V   P +    +E  +   G+ +TL C+A G P+P ++W + +  F     D++
Sbjct: 86  KQAFLQVFVQPHIIQLKNE-TTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS 143
Query: 319 LE-RDELTSR---AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           L+ R E+  +   +   I  V+ SD+G+Y C   +  G  +K + + +E
Sbjct: 144 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 272 TLPAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
           ++PA+++    +  +   GE +T  C A+G P P +SW +     + N +     S    
Sbjct: 1   SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
           T+ ++  SD G Y C   N AG +EK   + V  +P
Sbjct: 61  TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 123/315 (39%), Gaps = 50/315 (15%)
Query: 98  PRQQSAPEGS---QVTIECKSN-DPSATIKWSKDNQE-QLPPN----MIAGETLIINGIT 148
           P     PEGS   +VT+ C++  +P AT +W  +  E ++ P+    ++AG+ +I N + 
Sbjct: 11  PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVK 70
Query: 149 KADEGVYICSIQNAQGNVFQDYASI------QVDKREMPRIRIHPNASQTFIVGDRADIQ 202
             D G Y C   NA+G V    AS+      +    E   ++I       F         
Sbjct: 71  AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT-------- 122
Query: 203 CVLEAGEPSPTQTWIR-------PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
           C      P+ +  W+        P +  +F     V Q  G L        D G Y+C A
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRF-----VSQTTGNLYIAKTEASDLGNYSCFA 177
Query: 256 ENSAGKEVMNAYIHVLTLPAVTITPSEYV-SVRP----------GEPLTLECEATGRPMP 304
            +       + +     L        +Y  S++           G+ +TLEC A G P+P
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP 237
Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
            + W K     D +     L+S  +  I +V   D G Y+C  +N  G +     + +  
Sbjct: 238 QIKWRK----LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293
Query: 365 RPEYGPISPRPGADI 379
           +P++  +     ADI
Sbjct: 294 QPDWLDVITDTEADI 308

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
           E PR    P   Q  + G  A   C    G+P P  TW +     N  +F   +E  +  
Sbjct: 5   EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
           G VLR   + T  DE  Y C+A+NS G+  ++A + VL         P + + P   V  
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
           R     T+ C A+G P P ++W K   P D    N    +L S A+  I S  E+D G+Y
Sbjct: 122 RT-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
           +C+  NSAG
Sbjct: 180 ECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
           E PR    P   Q  + G  A   C    G+P P  TW +     N  +F   +E  +  
Sbjct: 5   EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
           G VLR   + T  DE  Y C+A+NS G+  ++A + VL         P + + P   V  
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
           R     T+ C A+G P P ++W K   P D    N    +L S A+  I S  E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-QIESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
           +C+  NSAG
Sbjct: 180 ECVATNSAG 188

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 99  RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKA 150
           R  + P  + V   C +  +P  T +W K+ +E    + I G        +LI   +  +
Sbjct: 19  RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 78
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
           D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  C + + +
Sbjct: 79  DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-D 137
Query: 210 PSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGDEGKYTCI 254
             P   WI+    N  K+GPD   Y             +E+ VL   N+   D G+YTC+
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 255 AENSAGKEVMNAYIHVL 271
           A NS G    +A++ VL
Sbjct: 198 AGNSIGISFHSAWLTVL 214

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 36  GGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSIN 95
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL 319
              ++ V+      P +        S   G  +   C+      P + W+K++       
Sbjct: 96  HTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 155
Query: 320 ERDELTSRAVYTIASVRESD---------------AGQYKCIGKNSAG 352
             D L    V   A V  +D               AG+Y C+  NS G
Sbjct: 156 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
           E P + I     Q  + G  A   C    G+P P  TW +     N  +F   +E  +  
Sbjct: 4   ESPPVFIKKPVDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
           G VLR   + T  DE  Y C+A+N  G+  ++A + VL         P + + P   V  
Sbjct: 62  GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
           R     T+ C A+G P P ++W K   P D    N    +L S  +  I S  E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
           +C+  NSAG
Sbjct: 180 ECVASNSAG 188

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 124/288 (43%), Gaps = 35/288 (12%)
Query: 109 VTIECKSN-DPSATIKWSKDNQ-------EQLPPNMIAGETLIIN----GITKADEGVYI 156
           + IEC++  +P+ +  W+++++        ++     +G TL+I+    G  +  EG Y 
Sbjct: 35  ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG-TLVIDFRSGGRPEEYEGEYQ 93
Query: 157 CSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
           C  +N  G    +   +QV K  + P+  + P   Q    G    +QC    G PSP   
Sbjct: 94  CFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQE---GAPLTLQCNPPPGLPSPVIF 150
Query: 216 WIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGD-EGKYTCIAENSAGKEVMNA---YIHV 270
           W+    +     D  V Q   G L F+N+   D +  Y+C A       +       + V
Sbjct: 151 WMSSSME-PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 271 LTLPAVTI----------TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE 320
           LT   V            T S  + +R G  L LEC A+G P P ++W K       +  
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
           + E  ++A+  I +V E D+G+Y C+  N  G+    I+V V+  P +
Sbjct: 269 KFENFNKAL-RITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYW 315

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 20  NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 79
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++ R  P ++    A+ + +VG   +  
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEG 249
           C + + +  P   WI+    N  K+GPD    ++V +  G       VL   N+   D G
Sbjct: 140 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 250 KYTCIAENSAGKEVMNAYIHVL 271
           +Y C   N  G+   +A++ VL
Sbjct: 199 EYICKVSNYIGQANQSAWLTVL 220

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 20/166 (12%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 44  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA------ 313
              ++ V+      P +        S   G  +   C+      P + W+K++       
Sbjct: 104 HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
Query: 314 -----PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
                P+ + L+   + S    V  + +V E+DAG+Y C   N  G
Sbjct: 164 GPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------GVLRFNNI 243
           +Q   VG  A   C    G+P P+  W +  N  K       Y  L       +LR   +
Sbjct: 17  NQGVRVGGVASFYCAAR-GDPPPSIVWRK--NGKKVSGTQSRYTVLEQPGGISILRIEPV 73
Query: 244 ATG-DEGKYTCIAENSAGKEV-MNAYIHVLT-------LPAVTITPSEYVSVRPGEPLTL 294
             G D+  Y C+AEN  G  V  +A + +          P +T  P   V +  G  + +
Sbjct: 74  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLM 132
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
            C+A G P P + W+K     D +  R  L       I + RE D G+Y+C+ +NS GTE
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQGKYECVAENSMGTE 191
Query: 355 EKVIT 359
               T
Sbjct: 192 HSKAT 196

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------GVLRFNNI 243
           +Q   VG  A   C    G+P P+  W +  N  K       Y  L       +LR   +
Sbjct: 15  NQGVRVGGVASFYCAAR-GDPPPSIVWRK--NGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 244 ATG-DEGKYTCIAENSAGKEV-MNAYIHVLT-------LPAVTITPSEYVSVRPGEPLTL 294
             G D+  Y C+AEN  G  V  +A + +          P +T  P   V +  G  + +
Sbjct: 72  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLM 130
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
            C+A G P P + W+K     D +  R  L       I + RE D G+Y+C+ +NS GTE
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQGKYECVAENSMGTE 189
Query: 355 EKVIT 359
               T
Sbjct: 190 HSKAT 194

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
           D G+Y C   +A+G   +    +++ ++   R  + P   Q F  G+ A++ C + +  P
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP---QEFKQGEDAEVVCRVSSS-P 126
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT----------GDEGKYTCIAENSAG 260
           +P  +W+  + +     D          RF  +A            DEG Y C     A 
Sbjct: 127 APAVSWLYHNEEVTTISDN---------RFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 261 KEVMNAYIHVLTL--PAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
            E+    I V+    PA+++    +  +   GE +T  C A+G P P +SW +     + 
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 237
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
           N +     S    T+ ++  SD G Y C   N AG +EK
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 276

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITPS-------- 281
           V Q  G L   N+   D+G Y+C ++  S  K V + +I ++ +P  T  P         
Sbjct: 61  VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
           + V    G+ +TLEC A G P+P + W K + P     E    TS AV  I +++  D G
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEG 178
Query: 342 QYKCIGKNSAGTEEKVITVAVE 363
            Y+C  +N  G ++    + V+
Sbjct: 179 IYECEAENIRGKDKHQARIYVQ 200

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 20  NTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 79
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
           +  +  +D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 139
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEG 249
           C + + +  P   WI+    N  K+GPD    ++V +  G       VL   N+   D G
Sbjct: 140 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 250 KYTCIAENSAGKEVMNAYIHVL 271
           +Y C   N  G+   +A++ VL
Sbjct: 199 EYICKVSNYIGQANQSAWLTVL 220

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 30/171 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 44  GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 100
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIA- 313
             +  H   L  V  +P   +         S   G  +   C+      P + W+K++  
Sbjct: 101 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Query: 314 ----------PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
                     P+ + L+   + S    V  + +V E+DAG+Y C   N  G
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 113/275 (41%), Gaps = 24/275 (8%)
Query: 96  VTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
           ++P   S   G  + + C + ++P A   W  +   Q      + + L I  IT  + G 
Sbjct: 208 ISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ-----STQELFIPNITVNNSGS 262
Query: 155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ 214
           Y C   N+   + +   +      E P+  I  N S    V D   +    E    + T 
Sbjct: 263 YTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP--VEDEDAVALTCEPEIQNTTY 320
Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI-HVLTL 273
            W   +      P +++  +   L   ++   D G Y C  +N    +  +  I +VL  
Sbjct: 321 LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 274 PAV-TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
           P   TI+PS Y   RPG  L+L C A   P    SW+      D N+++    ++ ++ I
Sbjct: 381 PDDPTISPS-YTYYRPGVNLSLSCHAASNPPAQYSWL-----IDGNIQQH---TQELF-I 430
Query: 333 ASVRESDAGQYKCIGKNSAG----TEEKVITVAVE 363
           +++ E ++G Y C   NSA     T  K ITV+ E
Sbjct: 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGKFGPDV----EVYQEL 235
           R +++P     FI  + A    +L   +  P+P+  W +          V     V Q  
Sbjct: 213 RPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVS 272
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
           G L   +    D GKY C+  NS G E +   + V    +  I P    +V  G P    
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFT 331
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
           C+ TG P+ TVSW+K               S +V  I SV++ D G Y+C  +N   + E
Sbjct: 332 CQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAE 383

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
           V Q  G L   +    D GKY C+  NS G E +   + V    +  I P    +V  G 
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 323
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           P    C+ TG P+ TVSW+K               S +V  I SV++ D G Y+C  +N 
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 375
Query: 351 AGTEE 355
             + E
Sbjct: 376 RESAE 380

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
           V Q  G L   +    D GKY C+  NS G E +   + V    +  I P    +V  G 
Sbjct: 271 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 329
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           P    C+ TG P+ TVSW+K               S +V  I SV++ D G Y+C  +N 
Sbjct: 330 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 381
Query: 351 AGTEE 355
             + E
Sbjct: 382 RESAE 386

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 33/196 (16%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           PR    P   QT + G  A   C    G+P P   W       K G  V   Q   V+ F
Sbjct: 7   PRFTRTP-VDQTGVSGGVASFIC-QATGDPRPKIVW------NKKGKKVS-NQRFEVIEF 57
Query: 241 NNIATG-----------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSE 282
           ++ +             DE  Y C+A N+ G+  ++  + VL         P + + P  
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAV--YTIASVRE 337
            V  R     T+ C A+G P P ++W K   P D    N    +L S ++    I    E
Sbjct: 118 KVVERT-RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 338 SDAGQYKCIGKNSAGT 353
           SD G+Y+C+  NSAGT
Sbjct: 177 SDQGKYECVATNSAGT 192

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 99  RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKA 150
           R  + P  + V   C +  +P  T +W K+ +E    + I G        +LI   +  +
Sbjct: 26  RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 85
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
           D+G Y C ++N  G++   Y    V++    P ++    A+ + +VG   +  C + + +
Sbjct: 86  DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-D 144
Query: 210 PSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEGKYTCIAE 256
             P   WI+    N  K+GPD    ++V +  G       VL   N+   D G+Y C   
Sbjct: 145 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 204
Query: 257 NSAGKEVMNAYIHVL 271
           N  G+   +A++ VL
Sbjct: 205 NYIGQANQSAWLTVL 219

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 30/171 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
            G P PT  W++   + K    +  Y+   +   L   ++   D+G YTC+ EN  G   
Sbjct: 43  GGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYG--- 99
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIA- 313
             +  H   L  V  +P   +         S   G  +   C+      P + W+K++  
Sbjct: 100 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 157
Query: 314 ----------PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
                     P+ + L+   + S    V  + +V E+DAG+Y C   N  G
Sbjct: 158 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 208

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQEL 235
           PRI  HP         + A + C +E G+P PT  W +   DG+     E     V  + 
Sbjct: 10  PRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFK---DGEPVSTNEKKSHRVQFKD 64
Query: 236 GVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGE 290
           G L F     G    D G+Y C+A+N  G+ V  +A + +  L        +   V  GE
Sbjct: 65  GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE 124
Query: 291 PLTLEC-EATGRPMPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAG 341
              LEC    G P PT+ W+K   P D +L+        R  +       I++V   D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLD-DLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 342 QYKCIGKNSAGTEE 355
            YKCI +N  GT E
Sbjct: 184 NYKCIAQNLVGTRE 197

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQEL 235
           PRI  HP         + A + C +E G+P PT  W +   DG+     E     V  + 
Sbjct: 10  PRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFK---DGEPVSTNEKKSHRVQFKD 64
Query: 236 GVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGE 290
           G L F     G    D G+Y C+A+N  G+ V  +A + +  L        +   V  GE
Sbjct: 65  GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE 124
Query: 291 PLTLEC-EATGRPMPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAG 341
              LEC    G P PT+ W+K   P D +L+        R  +       I++V   D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLD-DLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 342 QYKCIGKNSAGTEE 355
            YKCI +N  GT E
Sbjct: 184 NYKCIAQNLVGTRE 197

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKF----GPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
           ++C++E  +     +W +   DGK       +  + ++ G L F      DEG Y C AE
Sbjct: 26  LECIIEGNDQGVKYSWKK---DGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 82
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP--GEPLTLECEA-TGRPMPTVSWVKYIA 313
             AG  V ++ +       +  +P++     P  G P  L+C      P P ++W K ++
Sbjct: 83  TPAG--VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS 140
Query: 314 PFDRNLERDELTSRAV--------YTIASVRE-SDAGQYKCIGKNSAGTEEKVI 358
             D N +  +   R          +TI +  + SD  +Y C  KN+A  EE V+
Sbjct: 141 GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 208 GEPSPTQTWIRP-------DNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
           GEP P  TW R        + D      +EV  + G   L   ++   D G+Y C A + 
Sbjct: 26  GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--KYIAPFD 316
            G    + Y+ +   P      + Y S   G P+ + C+    P  ++ W   K + P  
Sbjct: 86  IGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRRDKLVLPAK 144
Query: 317 R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT--EEKVITVA 361
              NL+      + +  IA   ++D G+Y C   N  GT  +E ++ +A
Sbjct: 145 NTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPF-----DRNLE-RDELTSR---AVYTIASVRESDAGQ 342
           +TL C+A G P+P ++W + +  F     D++L+ R E+  +   +   I  V+ SD+G+
Sbjct: 18  VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEY 368
           Y C   +  G  +K + + +E+ P++
Sbjct: 78  YDCEAASRIGGHQKSMYLDIEYAPKF 103

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 208 GEPSPTQTWIRP-------DNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
           GEP P  TW R        + D      +EV  + G   L   ++   D G+Y C A + 
Sbjct: 26  GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--KYIAPFD 316
            G    + Y+ +   P      + Y S   G P+ + C+    P  ++ W   K + P  
Sbjct: 86  IGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRRDKLVLPAK 144
Query: 317 R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
              NL+      + +  IA   ++D G+Y C   N  GT  +   +A+   P
Sbjct: 145 NTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPF-----DRNLE-RDELTSR---AVYTIASVRESDAGQ 342
           +TL C+A G P+P ++W + +  F     D++L+ R E+  +   +   I  V+ SD+G+
Sbjct: 18  VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEY 368
           Y C   +  G  +K + + +E+ P++
Sbjct: 78  YDCEAASRIGGHQKSMYLDIEYAPKF 103

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 102 SAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAG-------ETLIINGITKADEG 153
           + P  + V   C  + +P+ +I W K+ +E    + I G        +L++  +  +D G
Sbjct: 26  AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 154 VYICSIQNAQGNVFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            Y C ++N  G++ Q Y ++ V +R    P ++    A+QT ++G   +  C + + +  
Sbjct: 86  NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS-DAQ 143
Query: 212 PTQTWIR--PDNDGKFGPDVEVY-----------QELGV-LRFNNIATGDEGKYTCIAEN 257
           P   W++    N  K GPD   Y            E  V LR  N++  D G+Y C A N
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 258 SAG 260
             G
Sbjct: 204 FIG 206

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
           AG P+P+ +W++  N  +F  +     +++  +   L   ++   D G YTC+ EN  G 
Sbjct: 40  AGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
Query: 262 -------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
                  +V+    H   L A    P+   +V  G  +   C+      P + W+K++  
Sbjct: 98  IRQTYTLDVLERSPHRPILQAGL--PANQTAVL-GSDVEFHCKVYSDAQPHIQWLKHVEV 154
Query: 313 ---------APFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
                     P+   L+    + + +     +A+V E D G+Y C   N  G  EK   +
Sbjct: 155 NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Query: 361 AVEHRP 366
           +V H P
Sbjct: 215 SV-HGP 219

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT----- 245
           Q F  G+ A++ C + +  P+P  +W+  +         E    +   RF  +A      
Sbjct: 12  QEFKQGEDAEVVCRVSSS-PAPAVSWLYHN---------EEVTTISDNRFAMLANNNLQI 61
Query: 246 -----GDEGKYTCIAENSAGKEV--MNAYIHVLTLPAVTITPSEY-VSVRPGEPLTLECE 297
                 DEG Y C     A  E+   +  + V   PA+++    +  +   GE +T  C 
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 298 ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
           A+G P P +SW +     + N +     S    T+ ++  SD G Y C   N AG +EK
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RA 328
           TL A  +T    ++V  GE     C+  G P+PTV+W++       +  R ++T+   ++
Sbjct: 12  TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKS 70
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            + I+SV+ SD G Y  + +NS G +E   T+ ++
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRESDA 340
           V+++ G+ L L C   G P P VSW+   K +A  D    + E    A +TI  V  +D+
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G+Y  + KN  G+E    TV+V
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSV 208

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRESDA 340
           V+++ G+ L L C   G P P VSW+   K +A  D    + E    A +TI  V  +D+
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G+Y  + KN  G+E    TV+V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSV 313

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           L+C+ATG P+P +SW+K    F     R  +  +    I ++R SD G Y C+  +S+G
Sbjct: 28  LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG 86

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 162 AQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA-GEPSPTQTWIRP 219
            QG  F+D+  + + +     R RI    +Q   V +   +Q V  A G+P P   W+ P
Sbjct: 363 VQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP 422
Query: 220 DN---DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
                  K    + V+ + G L        D G Y CIA N+ G + M A++HV
Sbjct: 423 RKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
           + D K     E+ + L  L  + +   D+G YTC A +    +  + ++ V   P V   
Sbjct: 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 333
Query: 280 P--SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE 337
                 V    GE + +  +  G P P + W K   P + N     + +  V TI  V E
Sbjct: 334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSE 390
Query: 338 SDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYG 369
            D G Y  I  N    E++  V+++ V   P+ G
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 424

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
           + D K     E+ + L  L  + +   D+G YTC A +    +  + ++ V   P V   
Sbjct: 144 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 203
Query: 280 PS--EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE 337
                 V    GE + +  +  G P P + W K   P + N     + +  V TI  V E
Sbjct: 204 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSE 260
Query: 338 SDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYG 369
            D G Y  I  N    E++  V+++ V   P+ G
Sbjct: 261 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 294

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RAVYTIAS 334
           +T    ++V  GE     C+  G P+PTV+W++       +  R ++T+   ++ + I+S
Sbjct: 12  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISS 70
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           V+ SD G Y  + +NS G +E   T+ ++
Sbjct: 71  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIASVRESDAG 341
           V+ + GE   L C+  GRP+P + W ++       R  +          T+ +  + D G
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
            Y CI  N  G  E    + ++  P++ P  P
Sbjct: 77  VYTCIATNEVGEVETSSKLLLQATPQFHPGYP 108

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLR 239
           P IR  P  +QT  V     + CV   G P PT  W R D       D  + Q E GVL+
Sbjct: 9   PVIRQGP-VNQTVAVDGTFVLSCV-ATGSPVPTILW-RKDGVLVSTQDSRIKQLENGVLQ 65
Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
                 GD G+YTCIA   +G+   +AYI V
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIIN 145
           L P+ +++ V P  ++   G  V + C++   P    +W K N+E   PN    E LI N
Sbjct: 14  LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE--IPNGNTSE-LIFN 70
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP---------------RIRIHPNAS 190
            +   D G Y+C + N     F  ++  Q+D  ++P               +I + P  S
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWS--QLDVCDIPESFQRSVDGVSESKLQICVEP-TS 127
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIR 218
           Q  + G    +QCV   G P P   W +
Sbjct: 128 QKLMPGSTLVLQCV-AVGSPIPHYQWFK 154

>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In Complex With Stem Cell Factor (Scf) Length = 489

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 105 EGSQVTIECKSNDPSATI--KWSKDN-----QEQLPP------NMIAGETLIINGITKAD 151
           EG + T+ C   D S+++   W ++N     QE+         N     TL I+     D
Sbjct: 200 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 259
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE-AGEP 210
            GV++C   N  G+         VDK     I I P  + T  V D  ++  ++E    P
Sbjct: 260 SGVFMCYANNTFGSANVTTTLEVVDKG---FINIFPMINTTVFVNDGENVDLIVEYEAFP 316
Query: 211 SPT-QTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG 260
            P  Q WI  +    F    E Y         + +  L    +   + G YT +  NS  
Sbjct: 317 KPEHQQWIYMNR--TFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 374
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
              +   ++V T P +      Y  +  G    L+C A G P PT+ W  Y  P
Sbjct: 375 NAAIAFNVYVNTKPEILT----YDRLVNG---MLQCVAAGFPEPTIDW--YFCP 419

>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The Receptor Tyrosine Kinase, Kit Length = 524

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 105 EGSQVTIECKSNDPSATI--KWSKDN-----QEQLPP------NMIAGETLIINGITKAD 151
           EG + T+ C   D S+++   W ++N     QE+         N     TL I+     D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE-AGEP 210
            GV++C   N  G+         VDK     I I P  + T  V D  ++  ++E    P
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDK---GFINIFPMINTTVFVNDGENVDLIVEYEAFP 341
Query: 211 SPT-QTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG 260
            P  Q WI  +    F    E Y         + +  L    +   + G YT +  NS  
Sbjct: 342 KPEHQQWIYMNR--TFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
              +   ++V T P +      Y  +  G    L+C A G P PT+ W  Y  P
Sbjct: 400 NAAIAFNVYVNTKPEILT----YDRLVNG---MLQCVAAGFPEPTIDW--YFCP 444

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 290 EPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT---SRAVYTIASVRESDAGQYKCI 346
           + +TL C+A G P PT++W K   P ++    ++ +     +   I  V +SD  +Y CI
Sbjct: 29  QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 347 GKNSAGTEEKVITVAV 362
            +N AG ++  I + V
Sbjct: 89  AENKAGEQDATIHLKV 104

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
           G    + C +E  E  P   W++      N  +    V     +G L   ++   D G+Y
Sbjct: 17  GQPVKLNCSVEGXE-EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 252 TCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWV 309
            C  E+    E+    ++ V  +P  T+ P + ++V P  P  L CEA G P P T+ W 
Sbjct: 76  WCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWW 134
Query: 310 K 310
           +
Sbjct: 135 R 135

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRAD 200
           +    +T+ D G Y C +    GN    Y  ++V    + P  +   N   +  +G+RA 
Sbjct: 70  ITFKSVTREDTGTYTCMVSEEGGN---SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV 126
Query: 201 IQCVLEAGEPSPTQTWIR--------PDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKY 251
           + C  + G P    TW +        P +   F     V     G L F+ ++  D G+Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 252 TCIAENSAG 260
           +C A N  G
Sbjct: 187 SCEARNGYG 195

>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTSRA-----V 329
           VT+      SVRPG  +T  C A  + P  T+ W +        L   +L SRA     +
Sbjct: 12  VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR--------LHNGKLPSRAMDFNGI 63
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            TI +V+ SDAG Y C G N    ++   T+ V+
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
           G  A+++C    G    +  W+ P+      G +   + V  + G L F N+   D G+Y
Sbjct: 327 GMAAELKC--RTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHD-GTLNFTNVTVQDTGQY 383
Query: 252 TCIAENSAGKEVMNAYIHV 270
           TC+  NSAG    +A ++V
Sbjct: 384 TCMVTNSAGNTTASATLNV 402

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
           P +   PS+ + V  GEP TL C+A GRP PT+ W K          D    R  L S +
Sbjct: 10  PRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 329 VYTIASV--RES--DAGQYKCIGKNSAG 352
           ++ +  V  R+S  D G Y C+ +N  G
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLG 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	471
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-60
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-56
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-55
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-38
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-57
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-33
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-55
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-42
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-18
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-55
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-53
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-51
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-50
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-49
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-44
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-54
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-47
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-53
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-33
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-31
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-53
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-51
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-37
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-29
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-15
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-52
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-34
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-52
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-50
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-49
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-48
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-50
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-34
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-50
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-39
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-31
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-48
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-41
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-25
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-20
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-47
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-47
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-44
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-46
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-46
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-32
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-46
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-45
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-45
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-30
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-45
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-33
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-45
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-30
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-44
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-43
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-44
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-43
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-43
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-33
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-19
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-44
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-24
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-43
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-40
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-29
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-40
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-38
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-38
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-09
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-37
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-29
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-37
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-25
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-37
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-28
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-36
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-35
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-19
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-35
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-27
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-24
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-34
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-33
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-27
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-19
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-33
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-30
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-20
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-33
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-25
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-21
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-32
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-22
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-13
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-31
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-32
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-32
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-31
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-31
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-15
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-31
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-17
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-31
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-25
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-19
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-10
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-31
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-31
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-30
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-30
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-28
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-30
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-30
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-19
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-30
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-30
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-20
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-30
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-30
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	9e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-30
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-25
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-29
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-17
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-29
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-28
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-26
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-28
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-25
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-10
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-27
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-24
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-26
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-24
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-11
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-26
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-20
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-25
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-25
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-24
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-25
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-23
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-25
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-23
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-21
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-19
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-21
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-16
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-16
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-21
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-19
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-19
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	8e-12
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-18
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-17
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-14
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-18
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-18
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-11
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-17
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-16
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-08
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-06
2ens_A	96	Advanced glycosylation END product-specific recept	3e-16
2ens_A	96	Advanced glycosylation END product-specific recept	2e-12
2ens_A	96	Advanced glycosylation END product-specific recept	3e-11
2ens_A	96	Advanced glycosylation END product-specific recept	4e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-16
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-15
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-04
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-11
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-10
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-15
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-10
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-15
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	7e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-10
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-12
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	5e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-12
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-10
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	9e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-14
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-13
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-10
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	7e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-10
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-10
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-09
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-11
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	9e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	9e-12
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	1e-12
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-12
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	9e-12
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	9e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-11
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	4e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-11
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	7e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	9e-11
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	6e-10
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	7e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	6e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-10
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	4e-10
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-10
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	8e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	8e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-10
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	3e-10
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	3e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-10
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	5e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	8e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	5e-09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	3e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	3e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	9e-07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	7e-09
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	9e-06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	8e-09
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	8e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	1e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	7e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-07
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	4e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	4e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	1e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	8e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	6e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	1e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	4e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	8e-04
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	5e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	8e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	5e-05
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-05
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	1e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	2e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	9e-04
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	2e-05
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	3e-05
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	3e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	5e-05
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	6e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	6e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	8e-04
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	6e-05
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	6e-05
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	9e-05
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	3e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	2e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	2e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	2e-04
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	3e-04
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	3e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	3e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	4e-04
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	5e-04
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	5e-04
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	5e-04
1xt5_A	135	Variable region-containing chitin-binding protein	6e-04
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	7e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  205 bits (524), Expect = 4e-60
 Identities = 78/366 (21%), Positives = 127/366 (34%), Gaps = 65/366 (17%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLII 144
              + P       G   T +C         I W+KDN+E + P        +    TL +
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTATLTV 257

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
             +TK D G Y C   N  G   +D  S Q+  +E PR       S+     +    +C 
Sbjct: 258 LKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314

Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKE 262
           +  G P     W + + + +      +     + VL   N++  D G YTC A N+AG  
Sbjct: 315 IG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373

Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD 322
             +  + V   P     P   V    G  + LECE  G P   VSW K         +  
Sbjct: 374 SSSTSLKVKEPPVFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 432

Query: 323 ELTSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADIL 380
            ++   + +  I +V  +D G+Y+C   N  G++  V ++ ++                 
Sbjct: 433 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK----------------- 475

Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGAT 440
                                          PPR   +    +   G+   ++ +  GA 
Sbjct: 476 ------------------------------APPRFVKKLSDISTVVGEEVQLQATIEGAE 505

Query: 441 PISIRW 446
           PIS+ W
Sbjct: 506 PISVAW 511

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  195 bits (498), Expect = 2e-56
 Identities = 73/369 (19%), Positives = 119/369 (32%), Gaps = 66/369 (17%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MIAGETLII 144
                 +      G  V  EC+ +      + W KD +  L  +       +    TL I
Sbjct: 103 SFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL-LKDDANLQTSFIHNVATLQI 161

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQC 203
               ++  G Y CS  N  G      A + + + E  P   + P  S    +G+    +C
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKC 219

Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGK 261
            +  G      TW + + + + G + ++        L    +  GD G+YTC A N AGK
Sbjct: 220 HVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278

Query: 262 EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRN 318
           +  +A + V   P           V+  E    EC+  G P   V W K    I    + 
Sbjct: 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338

Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
                + S AV  + ++   D+G Y C   N+AG+     ++ V+               
Sbjct: 339 -RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--------------- 382

Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
                                           EPP    +P       G   ++ C   G
Sbjct: 383 --------------------------------EPPVFRKKPHPVETLKGADVHLECELQG 410

Query: 439 ATPISIRWQ 447
             P  + W 
Sbjct: 411 TPPFQVSWH 419

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  191 bits (488), Expect = 5e-55
 Identities = 63/282 (22%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLIIN 145
           ++     +   +      ECK    P   + W KD   ++  +       + +   L + 
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET-EIQESSKFRMSFVESVAVLEMY 352

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
            ++  D G Y C   NA G      +S  +  +E P  R  P      + G    ++C L
Sbjct: 353 NLSVEDSGDYTCEAHNAAG---SASSSTSLKVKEPPVFRKKP-HPVETLKGADVHLECEL 408

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKEV 263
           + G P    +W +   + + G   ++  E  L  +   N+ + D G+Y C A N  G + 
Sbjct: 409 Q-GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467

Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLE 320
               I +   P      S+ +S   GE + L+    G    +V+W K    I     N+ 
Sbjct: 468 CVGSITLKAPPRFVKKLSD-ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW 526

Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                + A    +    ++AG+Y C  KN AGT+E   T++V
Sbjct: 527 ISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  181 bits (461), Expect = 4e-51
 Identities = 76/392 (19%), Positives = 127/392 (32%), Gaps = 75/392 (19%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-------IAGETLIINGITK 149
                A  G  +T++CK    P   I W K++ + L               +L+IN +  
Sbjct: 12  LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTK-LRSAPAYKMQFKNNVASLVINKVDH 70

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAG 208
           +D G Y C  +N+ G V    A + + +R++ P             +G     +C +  G
Sbjct: 71  SDVGEYTCKAENSVGAV-ASSAVLVIKERKLPPSFARKL-KDVHETLGFPVAFECRIN-G 127

Query: 209 EPSPTQTWIRPDNDGKFGPDVEVY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
                 +W +     K   +++      +  L+         G+Y C A N  G    +A
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSA 187

Query: 267 YIHVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLER 321
            + +      P   + P   V +  GE  T +C  TG     ++W K         N + 
Sbjct: 188 KLTLSEHEVPPFFDLKPVS-VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
             + + A  T+  V + DAGQY C   N AG +     + V+                  
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------ 288

Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGAT 440
                                        EPPR   +    + VK  +     C   G+ 
Sbjct: 289 -----------------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 319

Query: 441 PISIRW----QPLQ--GYFPSHVVEYNGELRL 466
            I + W      +Q    F    VE    L +
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEM 351

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  146 bits (369), Expect = 2e-38
 Identities = 61/299 (20%), Positives = 97/299 (32%), Gaps = 60/299 (20%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVL 238
           P             +G+   +QC ++ G P     W +     +  P  ++  +  +  L
Sbjct: 6   PYFIEPLE-HVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV---LTLPAVTITPSEYVSVRPGEPLTLE 295
             N +   D G+YTC AENS G    +A + +      P+      + V    G P+  E
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD-VHETLGFPVAFE 122

Query: 296 CEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
           C   G     VSW K   +   D NL+   + + A   I    +S  GQY C   N  GT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182

Query: 354 EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPP 413
                 + +                                                 PP
Sbjct: 183 ASSSAKLTLSEHE--------------------------------------------VPP 198

Query: 414 RITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ--GYFPSHVVEYNGELRL 466
              L+PV   +  G+    +C   G  PI I W    + ++  G +   +VE    L +
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  116 bits (292), Expect = 4e-28
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGI 147
           +  P      +G+ V +EC+    P   + W KD +E                ++ I  +
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
             AD G Y C   N  G    D     +  +  PR     +   + +VG+   +Q  +E 
Sbjct: 448 DSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKLS-DISTVVGEEVQLQATIE- 502

Query: 208 GEPSPTQTWIRPDNDGKFGPD---VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
           G    +  W +   +     D   +   + +  L+F+     + GKYTC  +N AG +  
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562

Query: 265 NAYIHVL 271
            A + VL
Sbjct: 563 FATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 34/175 (19%), Positives = 51/175 (29%), Gaps = 46/175 (26%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVYT 331
           P   I P E+V    GEP+TL+C+  G P   ++W K           +     + A   
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
           I  V  SD G+Y C  +NS G       + ++ R                          
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK------------------------- 99

Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                               PP    +        G      C   G+ P+ + W
Sbjct: 100 -------------------LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
           ++EPP             G+   ++C   G   I I W
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAW 39

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  190 bits (484), Expect = 3e-57
 Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 23/289 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM---------IAGET 141
           +V + P Q     G      C+   +     I W   N E+L PN              T
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           L I      D G+Y C +    G   +   ++++   +    +  P   Q F  G+ A I
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI--FQKLMFKNAPT-PQEFKEGEDAVI 120

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
            C +      PT  W     D     DV         L+   I   DEG Y C     A 
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 261 KEVM--NAYIHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAP 314
            E+   +  + V   P V    S    +   G+ +TL C+A G P PT+SW K    I  
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239

Query: 315 FDRNLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
            + + E+   +  +   TI +V ++D  +Y CI +N AG ++  I + V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  138 bits (348), Expect = 2e-37
 Identities = 46/278 (16%), Positives = 76/278 (27%), Gaps = 60/278 (21%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQEL 235
            ++ I P +     VG+     C +         +W  P+ +           V    + 
Sbjct: 3   LQVDIVP-SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
             L   N    D G Y C+     G +      + +         P+     + GE   +
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAVI 120

Query: 295 ECEATGRPMPTVSWVKYIAPFD-RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
            C+      PT+ W         +   R  + S     I  ++++D G Y+C G+  A  
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 354 E--EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE 411
           E   K I V V                                                 
Sbjct: 181 EINFKDIQVIVN-----------------------------------------------V 193

Query: 412 PPRITLRP--VRQTVKPGDIANIRCSAIGATPISIRWQ 447
           PP +  R   V  T   G    + C A G    ++ W 
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWT 231

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  125 bits (315), Expect = 6e-33
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGI 147
            +  P  Q   EG    I C        TI W    ++ +        +++   L I GI
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGI 162

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLE 206
            K DEG Y C  +        ++  IQV     P ++   +  + T  +G    + C  +
Sbjct: 163 KKTDEGTYRCEGRILARGE-INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221

Query: 207 AGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
            G P PT +W +      N+ +         +   L   N+   DE +Y CIAEN AG++
Sbjct: 222 -GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280

Query: 263 VMNAYIHVL 271
             + ++ V 
Sbjct: 281 DASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 33/182 (18%), Positives = 50/182 (27%), Gaps = 55/182 (30%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVK-----YIAPFDRNLERDELTS 326
           +  V I PS+   +  GE     C+  G      +SW             R         
Sbjct: 2   VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            +  TI +    DAG YKC+     GT+ E  + V +                       
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------------------- 98

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                    +       P  Q  K G+ A I C  + + P +I 
Sbjct: 99  -------------------------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133

Query: 446 WQ 447
           W+
Sbjct: 134 WK 135

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  186 bits (473), Expect = 1e-55
 Identities = 68/284 (23%), Positives = 105/284 (36%), Gaps = 20/284 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI-------AGETLII 144
              + P       G   T +C         I W+KDN+E + P             TL +
Sbjct: 7   FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTATLTV 65

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
             +TK D G Y C   N  G   +D  S Q+  +E PR       S+     +    +C 
Sbjct: 66  LKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122

Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKE 262
           +  G P     W + + + +      +       VL   N++  D G YTC A N+AG  
Sbjct: 123 IG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNL 319
             +  + V   P     P   V    G  + LECE  G P   VSW K    +    +  
Sbjct: 182 SSSTSLKVKEPPVFRKKP-HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS-GKKY 239

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           +           I +V  +D G+Y+C   N  G+   V ++ ++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  151 bits (383), Expect = 1e-42
 Identities = 53/270 (19%), Positives = 86/270 (31%), Gaps = 53/270 (19%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVL 238
           P   + P  S    +G+    +C +  G      TW + + + + G + ++        L
Sbjct: 6   PFFDLKP-VSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
               +  GD G+YTC A N AGK+  +A + V   P           V+  E    EC+ 
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123

Query: 299 TGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
            G P   V W K               + S AV  + ++   D+G Y C   N+AG+   
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183

Query: 357 VITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRIT 416
             ++ V+                                               EPP   
Sbjct: 184 STSLKVK-----------------------------------------------EPPVFR 196

Query: 417 LRPVRQTVKPGDIANIRCSAIGATPISIRW 446
            +P       G   ++ C   G  P  + W
Sbjct: 197 KKPHPVETLKGADVHLECELQGTPPFQVSW 226

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 42/203 (20%), Positives = 62/203 (30%), Gaps = 59/203 (29%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P   + P   V +  GE  T +C  TG     ++W K    I P   N +   + + A  
Sbjct: 6   PFFDLKPVS-VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-GGNYKMTLVENTATL 63

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
           T+  V + DAGQY C   N AG +     + V+                           
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--------------------------- 96

Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRP-VRQTVKPGDIANIRCSAIGATPISIRW--- 446
                               EPPR   +    + VK  +     C   G+  I + W   
Sbjct: 97  --------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136

Query: 447 -QPLQ--GYFPSHVVEYNGELRL 466
              +Q    F    VE    L +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEM 159

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ--GYFPSHVVEYNG 462
           ++ PP   L+PV   +  G+    +C   G  PI I W    + ++  G +   +VE   
Sbjct: 2   AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61

Query: 463 ELRL 466
            L +
Sbjct: 62  TLTV 65

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  195 bits (498), Expect = 4e-55
 Identities = 76/391 (19%), Positives = 131/391 (33%), Gaps = 71/391 (18%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
             ++ P  Q+   G      C+   +P  T+ W KD +            L I  + K D
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----SVLRIESVKKED 400

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
           +G+Y C ++N + +  +  A +++  R  P +       +T   G    ++CV   G P+
Sbjct: 401 KGMYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPT 458

Query: 212 PTQTWIRPD----NDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
           P  +W        N+ ++     V      +  L   ++   D G Y CIA++  G    
Sbjct: 459 PEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH 518

Query: 265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL 324
           +A ++V  LP   I   E  ++  GE L + C   G P+ ++ W +       N  + ++
Sbjct: 519 SAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN-RKQKV 575

Query: 325 TSRAVYTIASV-RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDG 383
                  I +V R SD   Y C+ KN  G   +                           
Sbjct: 576 FPNGTLIIENVERNSDQATYTCVAKNQEGYSAR--------------------------- 608

Query: 384 DEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPI 442
                              +  +   V P  I         + G    + CS  G   P+
Sbjct: 609 ------------------GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPL 650

Query: 443 SIRW-------QPLQGYFPSHVVEYNGELRL 466
           +I W           G   S V      L +
Sbjct: 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  189 bits (482), Expect = 7e-53
 Identities = 73/372 (19%), Positives = 127/372 (34%), Gaps = 72/372 (19%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE-----------QLPPNMIAGE 140
            ++   ++++   G  V ++C +  +P+  I W  D ++            +  N     
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVS 490

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
            L I  +   D G+Y C  ++  G       S +++   +P IR      +  + G+   
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAE---HSAKLNVYGLPYIRQMEK--KAIVAGETLI 545

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA-TGDEGKYTCIAENSA 259
           + C + AG P  +  W R +         +V+   G L   N+    D+  YTC+A+N  
Sbjct: 546 VTCPV-AGYPIDSIVWERDNRALPINRKQKVFPN-GTLIIENVERNSDQATYTCVAKNQE 603

Query: 260 GKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK---YIAP 314
           G     +  + V+ LP +     E    + G+ LTL C   G  +P  + W      I+ 
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE 663

Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
                        +V TI +V  S AG + C  +N AG ++    + V            
Sbjct: 664 DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----------- 712

Query: 375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRC 434
                                                PPR  L P  +    G  A + C
Sbjct: 713 ------------------------------------VPPRWILEPTDKAFAQGSDAKVEC 736

Query: 435 SAIGATPISIRW 446
            A G     + W
Sbjct: 737 KADGFPKPQVTW 748

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  184 bits (469), Expect = 4e-51
 Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 20/288 (6%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKA 150
               +++   G  + + C  +  P  +I W +DN+  LP N    +    TLII  + + 
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRA-LPINRKQKVFPNGTLIIENVERN 589

Query: 151 -DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
            D+  Y C  +N +G   +    +QV    +PRI           VG    + C +  G 
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQV--MVLPRIIPFAFEEGPAQVGQYLTLHCSVP-GG 646

Query: 210 PSPTQ-TWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
             P    W            +   +      VL    +     G +TC A N AG +   
Sbjct: 647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706

Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT 325
             ++V   P   + P++  +   G    +EC+A G P P V+W K +       +  + +
Sbjct: 707 TPLNVYVPPRWILEPTD-KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKS 765

Query: 326 SRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
                      + ++++++ G Y C   N  G+    + +       +
Sbjct: 766 DNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  182 bits (462), Expect = 3e-50
 Identities = 74/383 (19%), Positives = 116/383 (30%), Gaps = 84/383 (21%)

Query: 91  ANEVQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMIAGE------ 140
           A   +    ++    G+   I+C       D    + W  D +E   P            
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197

Query: 141 --TLIINGITKAD-EGVYICSIQNAQGNVFQDYASIQVDKREMPR-------IRIHPNAS 190
              L I  +   D    Y C  ++      +  A+        P        + +     
Sbjct: 198 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDM 257

Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATG 246
           +T+       + C  + G P P   W +          V     V Q  G L   +    
Sbjct: 258 KTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
           D GKY C+  NS G E +   + V    +  I P    +V  G P    C+ TG P+ TV
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQYTGNPIKTV 375

Query: 307 SWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           SW+K    I   +  L            I SV++ D G Y+C  +N   + E    + + 
Sbjct: 376 SWMKDGKAIGHSESVL-----------RIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424

Query: 364 HRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT 423
            R                                             +PP I      +T
Sbjct: 425 GRF--------------------------------------------DPPVIRQAFQEET 440

Query: 424 VKPGDIANIRCSAIGATPISIRW 446
           ++PG    ++C A G     I W
Sbjct: 441 MEPGPSVFLKCVAGGNPTPEISW 463

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  180 bits (458), Expect = 1e-49
 Identities = 81/392 (20%), Positives = 123/392 (31%), Gaps = 86/392 (21%)

Query: 98  PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI--------AGETLIINGIT 148
              ++    S + + C +   P    +W K  +       +           TLII    
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
             D G Y+C + N+ G    +     +        +I P  +QT   G  A   C    G
Sbjct: 315 VEDSGKYLCVVNNSVG---GESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQYT-G 369

Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
            P  T +W++   DGK      +     VLR  ++   D+G Y C   N       +A +
Sbjct: 370 NPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

Query: 269 HVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERD 322
            +      P +     E   + PG  + L+C A G P P +SW      IA  DR     
Sbjct: 422 KLGGRFDPPVIRQAFQEET-MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 480

Query: 323 ELTSRAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
            +T          I SV  +D G YKCI K+  G  E    + V                
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY--------------- 525

Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
                                             P I  +  ++ +  G+   + C   G
Sbjct: 526 --------------------------------GLPYIR-QMEKKAIVAGETLIVTCPVAG 552

Query: 439 ATPISIRW----QPLQGYFPSHVVEYNGELRL 466
               SI W    + L        V  NG L +
Sbjct: 553 YPIDSIVWERDNRALPIN-RKQKVFPNGTLII 583

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  165 bits (419), Expect = 2e-44
 Identities = 60/382 (15%), Positives = 106/382 (27%), Gaps = 83/382 (21%)

Query: 98  PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKAD 151
             +      +   IECK++ +P   I W + +   +        + +   L+       D
Sbjct: 46  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105

Query: 152 ------EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
                   VY C  +N  G++      ++             N  +  I G+ A I+C++
Sbjct: 106 YRQEVHAQVYACLARNQFGSIISRDVHVRA--VVAQYYEADVN-KEHVIRGNSAVIKCLI 162

Query: 206 EA--GEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATGD-EGKYTCIAENS 258
            +   +     +W   + +  F         +    G L    +   D    Y C  ++ 
Sbjct: 163 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 222

Query: 259 AGKEVMNAYIHVLTL----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
              E   +      +            V++   +  +      + L C A G P+P   W
Sbjct: 223 LTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW 282

Query: 309 VKYIAPFDRN----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
            K+I    R     L            I      D+G+Y C+  NS G E     + V  
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT- 341

Query: 365 RPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTV 424
                                                          P    + P  QTV
Sbjct: 342 ----------------------------------------------APLSAKIDPPTQTV 355

Query: 425 KPGDIANIRCSAIGATPISIRW 446
             G  A   C   G    ++ W
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSW 377

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  132 bits (333), Expect = 3e-33
 Identities = 50/323 (15%), Positives = 84/323 (26%), Gaps = 59/323 (18%)

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           + +         ++      A G+     A+     ++ P     P     F     A+I
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLA-ANPPDADQKGPVFLKEPTNRIDFSNSTGAEI 59

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGD------EGKYT 252
           +C    G P P   WIR  +DG    DV   +++   G L F      D         Y 
Sbjct: 60  ECKAS-GNPMPEIIWIR--SDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116

Query: 253 CIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA---TGRPMPTVSW 308
           C+A N  G  +  + ++  +         ++   V  G    ++C         +  VSW
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSW 175

Query: 309 VK----YIAPFDRNLERDELTSRAVYTIASVRESDA-GQYKCIGKNSAGTEEKVITVAVE 363
                    P      +  +       I  V   D    Y+C  K+    E ++      
Sbjct: 176 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235

Query: 364 HRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT 423
                   S  P                                          +   +T
Sbjct: 236 LVITEPISSAVP------------------------------------KVVSLAKFDMKT 259

Query: 424 VKPGDIANIRCSAIGATPISIRW 446
                   + C A G      RW
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRW 282

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---------MIAGETL 142
              + P  ++  +GS   +ECK    P   + W K   +               +   TL
Sbjct: 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTL 775

Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
            ++ I K +EG Y+C   N  G+       I V
Sbjct: 776 HVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 14/142 (9%), Positives = 26/142 (18%), Gaps = 51/142 (35%)

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
            + + R      +  +   + G++                                    
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDAD-------------------------- 35

Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPV-RQTVKPGDIANIRCSAIGATPISIRW--- 446
                               + P     P  R        A I C A G     I W   
Sbjct: 36  -------------------QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS 76

Query: 447 --QPLQGYFPSHVVEYNGELRL 466
               +        +  +G+L  
Sbjct: 77  DGTAVGDVPGLRQISSDGKLVF 98

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  186 bits (473), Expect = 1e-54
 Identities = 79/397 (19%), Positives = 123/397 (30%), Gaps = 85/397 (21%)

Query: 98  PRQQSAPEGS---QVTIECKSN-DPSATIKWSKDNQEQLPPN------MIAGETLIINGI 147
           P     PEGS   +VT+ C++  +P AT +W  +  E L         ++AG+ +I N +
Sbjct: 11  PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE-LKMGPDSRYRLVAGDLVISNPV 69

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
              D G Y C   NA+G V    AS++     +               G      C    
Sbjct: 70  KAKDAGSYQCVATNARGTVVSREASLRF--GFLQEFSAEERDPVKITEGWGVMFTCSPPP 127

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
             P+ +  W+  +       D   +     G L        D G Y+C A +       +
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187

Query: 266 AYIHVLTL-----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
            +     L           P++            G+ +TLEC A G P+P + W K    
Sbjct: 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL--- 244

Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
            D +     L+S  +  I +V   D G Y+C  +N  G +     + +            
Sbjct: 245 -DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH----------- 292

Query: 375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRC 434
                                                 P             G      C
Sbjct: 293 ------------------------------------AQPDWLDVITDTEADIGSDLRWSC 316

Query: 435 SAIGATPISIRW----QPLQGYFPSHVVEY-NGELRL 466
            A G    ++RW    QPL      + +E   GELR 
Sbjct: 317 VASGKPRPAVRWLRDGQPLA---SQNRIEVSGGELRF 350

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  166 bits (423), Expect = 2e-47
 Identities = 59/287 (20%), Positives = 95/287 (33%), Gaps = 32/287 (11%)

Query: 97  TPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
                   EG  V   C      P+ + +W  +      P             L I    
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKR--------EMPRIRIHPNASQTFIVGDRAD 200
            +D G Y C   +    + +   S                P I+    A    + G    
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT 226

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
           ++C    G P P   W +   DG         +   +L   N+   DEG Y C AEN  G
Sbjct: 227 LECFAF-GNPVPQIKWRK--LDGSQTSKWLSSE--PLLHIQNVDFEDEGTYECEAENIKG 281

Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR 317
           ++     I +   P      ++      G  L   C A+G+P P V W++    +A  +R
Sbjct: 282 RDTYQGRIIIHAQPDWLDVITD-TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340

Query: 318 -NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
             +   EL        + +   D+G Y+C+ +N  GT      + V+
Sbjct: 341 IEVSGGEL------RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  134 bits (340), Expect = 1e-35
 Identities = 53/294 (18%), Positives = 79/294 (26%), Gaps = 45/294 (15%)

Query: 181 PRIRIHPNASQTFIVG---DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
           P     P A   F  G   ++  + C      P  T  W     + K GPD       G 
Sbjct: 5   PVFEEQP-AHTLFPEGSAEEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRLVAGD 62

Query: 238 LRFNNIATG-DEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
           L  +N     D G Y C+A N+ G  V   A +    L   +    + V +  G  +   
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 296 CEAT-GRPMPTVSWVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           C      P  +  W+   +      +  R    +     IA    SD G Y C   +   
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182

Query: 353 TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP 412
              K +                                             A  +    P
Sbjct: 183 FITKSVFSKFSQLS-----------------------------------LAAEDARQYAP 207

Query: 413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRL 466
                 P       G +  + C A G     I+W+ L G   S  +     L +
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHI 261

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  123 bits (309), Expect = 2e-31
 Identities = 61/286 (21%), Positives = 92/286 (32%), Gaps = 60/286 (20%)

Query: 39  FVSAENHEVTVYEGGDAELKCN-TYYAPG---RWMWLNFYSFL-------------SLII 81
           F + E   V + EG      C+   + P    RW+   F +F+             +L I
Sbjct: 103 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI 162

Query: 82  -----------ICLAY------------------------LSPQANEVQVTPRQQSAPEG 106
                       C A                              +     P    A  G
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTG 222

Query: 107 SQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGN 165
             VT+EC +  +P   IKW K +  Q    + +   L I  +   DEG Y C  +N +G 
Sbjct: 223 QMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG- 281

Query: 166 VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF 225
             +D    ++     P             +G      CV   G+P P   W+R  +    
Sbjct: 282 --RDTYQGRIIIHAQPDWLDVIT-DTEADIGSDLRWSCVAS-GKPRPAVRWLR--DGQPL 335

Query: 226 GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
                +    G LRF+ +   D G Y C+AEN  G    +A + V 
Sbjct: 336 ASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  182 bits (464), Expect = 3e-53
 Identities = 69/398 (17%), Positives = 112/398 (28%), Gaps = 94/398 (23%)

Query: 100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN------MIAGETLIINGITKADE 152
                E  +V + C+   +P   I+W  +  + +         ++ G  LI N     D 
Sbjct: 17  FPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTD-VDIGMDFRYSVVDGSLLINNPNKTQDA 75

Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
           G Y C   N+ G +    A +Q     +   +    ++ +   G    + C         
Sbjct: 76  GTYQCIATNSFGTIVSREAKLQF--AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL 133

Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
           +  WI  +          V QE G L    +   D G YTC+  N+     +      L 
Sbjct: 134 SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193

Query: 273 L----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----------YI 312
           L          P + +   E V    G  + LEC A G P+PT+ W +            
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253

Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
              +  L            I + ++ DAG Y+C+ +NS G       +            
Sbjct: 254 HKSNGIL-----------EIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY--------- 293

Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
                                                   P          V   +    
Sbjct: 294 --------------------------------------AQPNWVQIINDIHVAMEESVFW 315

Query: 433 RCSAIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
            C A G    + RW     PL       +    G L +
Sbjct: 316 ECKANGRPKPTYRWLKNGDPLLTR--DRIQIEQGTLNI 351

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  168 bits (428), Expect = 5e-48
 Identities = 69/283 (24%), Positives = 102/283 (36%), Gaps = 26/283 (9%)

Query: 97  TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKA 150
           T    S   G  + + C    +    +  W  +       N          L I  + K+
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS 167

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREM-------PRIRIHPNASQTFIVGDRADIQC 203
           D G Y C + N   N         +  R         P+I +    +     G    ++C
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227

Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
               G P PT  W R D           ++  G+L   N    D G Y C+AENS GK V
Sbjct: 228 FAL-GNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285

Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NL 319
               +     P      ++ + V   E +  EC+A GRP PT  W+K    +   DR  +
Sbjct: 286 AKGQLTFYAQPNWVQIIND-IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI 344

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
           E+  L       I  V  SDAG Y+C+ +N  G       ++V
Sbjct: 345 EQGTL------NITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  129 bits (325), Expect = 2e-33
 Identities = 61/294 (20%), Positives = 90/294 (30%), Gaps = 45/294 (15%)

Query: 181 PRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
           P     P+     +     +  + C ++ G P P   W     D   G D       G L
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVK-GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 239 RFNNIA-TGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
             NN   T D G Y CIA NS G  V   A +    L          VSVR G+ + L C
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 297 EAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
                    + +W+    P  ++  R          IA V +SD G Y C+  N+    +
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK 184

Query: 356 KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRI 415
            +                                    G     +  N  +    EP   
Sbjct: 185 VL------------------------------------GPPTPLILRNDGVMGEYEPKIE 208

Query: 416 TLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFP---SHVVEYNGELRL 466
              P     + G    + C A+G    +I W+   G      +   + NG L +
Sbjct: 209 VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEI 262

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  122 bits (307), Expect = 5e-31
 Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 60/287 (20%)

Query: 38  QFVSAENHEVTVYEGGDAELKCN-TYYAPG---RWMWLNFYSFLS-----------LII- 81
            F +     V+V  G    L C    ++      W++  + S+             L I 
Sbjct: 103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIA 162

Query: 82  ----------ICLAY--------LSPQANEVQVT---------------PRQQSAPEGSQ 108
                      C+          L P    +                  P    A +G+ 
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTT 222

Query: 109 VTIECKSN-DPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEGVYICSIQNAQG 164
           V +EC +  +P  TI W + + + +        +   L I    + D G Y C  +N++G
Sbjct: 223 VKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG 282

Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK 224
              ++ A  Q+     P      N      + +    +C    G P PT  W++  N   
Sbjct: 283 ---KNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKAN-GRPKPTYRWLK--NGDP 335

Query: 225 FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
                 +  E G L    +   D G Y C+AEN  G    +A + V+
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  181 bits (462), Expect = 9e-53
 Identities = 75/374 (20%), Positives = 115/374 (30%), Gaps = 74/374 (19%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM------IAGETLIINGI 147
             P       G  V + C   S+     IKW KD    L   M      +   +L+I  I
Sbjct: 26  SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI-LALGMDDRKQQLPNGSLLIQNI 84

Query: 148 T-----KADEGVYICSIQ-NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
                 K DEG+Y C       G++    A + V      R       S T  +GD   +
Sbjct: 85  LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV--AGPLRFLSQTE-SITAFMGDTVLL 141

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSA 259
           +C +  G+P PT  W +   D    P       L  G L+ + +  GD G Y C A N A
Sbjct: 142 KCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200

Query: 260 GKEVMN-AYIHVLTLPAVTITPS-----EYVSVRPGEPLTLECEATGRPMPTVSWVKYIA 313
                N A + +L+ P +            V    G+   LEC  +G P P+ +W++   
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260

Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
                 ++  L   +   I++V + D+G Y C+             + V           
Sbjct: 261 VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL---------- 310

Query: 374 RPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIR 433
                                                 PP     P              
Sbjct: 311 -------------------------------------VPPWFLNHPSNLYAYESMDIEFE 333

Query: 434 CSAIGATPISIRWQ 447
           C+  G    ++ W 
Sbjct: 334 CAVSGKPVPTVNWM 347

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  178 bits (453), Expect = 2e-51
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 13/278 (4%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPN----MIAGETLIINGIT 148
                 +A  G  V ++C+   DP  TI W K+ Q    +P +    ++    L I+ + 
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCVL 205
             D GVY CS +N       + A +++            +   ++   I G  A ++C +
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
             G P P+ TW+R +   +             L  +N+   D G YTC+          +
Sbjct: 246 S-GYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISAS 304

Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT 325
           A + VL  P     P   +       +  EC  +G+P+PTV+W+K       + +  ++ 
Sbjct: 305 AELTVLVPPWFLNHP-SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-DYFQIV 362

Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
             +   I  V +SD G Y+C+ +N AG  +    + V 
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  141 bits (356), Expect = 1e-37
 Identities = 56/322 (17%), Positives = 89/322 (27%), Gaps = 63/322 (19%)

Query: 161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD 220
           +   +    +       R        P +    + G    + C  E+    P   W +  
Sbjct: 5   SELESS---HHHHHHGGRRSLHFVSEP-SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60

Query: 221 NDGKFGPDVEVYQ-ELGVLRFNNIA-----TGDEGKYTCIAENSAGKEVM--NAYIHVLT 272
                G D    Q   G L   NI        DEG Y C A       ++   A + V  
Sbjct: 61  LILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAV 329
                      ++   G+ + L+CE  G PMPT+ W K    + P   +  R  +     
Sbjct: 121 PLRFLSQTES-ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD-SRVVVLPSGA 178

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKV-ITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
             I+ ++  D+G Y+C  +N A T       V +   P                      
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPG--------------------- 217

Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW-- 446
                                        RP       G  A + C   G  P S  W  
Sbjct: 218 --------------------LHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257

Query: 447 --QPLQGYFPSHVVEYNGELRL 466
             + +Q     + +     L +
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLI 279

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  118 bits (298), Expect = 1e-29
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
                P    A EG    +EC  +  P  +  W +  +     +    ++ G  L+I+ +
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
           T  D G Y C +     N+    AS ++     P    HP+ +         + +C +  
Sbjct: 283 TDDDSGTYTCVVTYKNENI---SASAELTVLVPPWFLNHPS-NLYAYESMDIEFECAVS- 337

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
           G+P PT  W++  +        ++      LR   +   DEG Y C+AEN AG    +A 
Sbjct: 338 GKPVPTVNWMKNGDVVIPSDYFQIVGG-SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396

Query: 268 IHVLTLPA 275
           + V   PA
Sbjct: 397 LIVPK-PA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 34/228 (14%), Positives = 54/228 (23%), Gaps = 65/228 (28%)

Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIA 313
             +       + +            PS+      G  + L C A   R +P + W K   
Sbjct: 3   WGSELESSHHHHHHGGRRSLHFVSEPSD-AVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

Query: 314 PFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITVAVEH 364
                       L    L  + +   +   + D G Y+C            +   V V  
Sbjct: 62  ILALGMDDRKQQLPNGSLLIQNI-LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA- 119

Query: 365 RPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTV 424
                                                          P R   +    T 
Sbjct: 120 ----------------------------------------------GPLRFLSQTESITA 133

Query: 425 KPGDIANIRCSAIGATPISIRW----QPLQGYFPSH--VVEYNGELRL 466
             GD   ++C  IG    +I W    Q L         VV  +G L++
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI 181

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  176 bits (449), Expect = 3e-52
 Identities = 63/294 (21%), Positives = 109/294 (37%), Gaps = 21/294 (7%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-------AGE 140
           S    +V ++  +     G      C +     +I W     E++               
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
            L I      D G+Y C   +A+G   +    +++   +    R   +  Q F  G+ A+
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI--YQKLTFREVVS-PQEFKQGEDAE 117

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSA 259
           + C +    P+P  +W+  + +     D          L+  NI   DEG Y C     A
Sbjct: 118 VVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 176

Query: 260 GKEV-MNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
             E+     I ++ +P     P  S   +   GE +T  C A+G P P +SW +    I 
Sbjct: 177 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236

Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
             ++ + +   T     T+ ++  SD G Y C   N AG +EK   + V  +  
Sbjct: 237 ENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  129 bits (327), Expect = 2e-34
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 68/302 (22%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---- 235
           + ++ I  +      VG+     C    GEP     +   +  G+     +         
Sbjct: 4   LLQVTISLS-KVELSVGESKFFTCTAI-GEPESIDWY---NPQGEKIISTQRVVVQKEGV 58

Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
              L   N    D G Y C A ++ G+       + +          S     + GE   
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP-QEFKQGEDAE 117

Query: 294 LECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           + C  +  P P VSW+     +     N  R  + +     I ++ +SD G Y+C G+  
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDN--RFAMLANNNLQILNINKSDEGIYRCEGRVE 175

Query: 351 AGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSV 410
           A  E                                             +     I    
Sbjct: 176 ARGE---------------------------------------------IDFRDIIVIVN 190

Query: 411 EPPRITL--RPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
            PP I++  +    T + G+     C A G+   +I W    + ++      +   N EL
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250

Query: 465 RL 466
            +
Sbjct: 251 TV 252

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 56/204 (27%)

Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
           + L  VTI+ S+ V +  GE     C A G P     +                      
Sbjct: 2   MALLQVTISLSK-VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60

Query: 331 T--IASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
              I +    DAG Y+C   ++ G T+E  + + +                         
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------------ 96

Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW- 446
                                  +          Q  K G+ A + C    +   ++ W 
Sbjct: 97  -----------------------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 133

Query: 447 ---QPLQGYFPS-HVVEYNGELRL 466
              + +     +   +  N  L++
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQI 157

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  184 bits (468), Expect = 8e-52
 Identities = 56/271 (20%), Positives = 87/271 (32%), Gaps = 18/271 (6%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
             ++P       G  +++ C +  +P A   W  D   Q        + L I+ IT+ + 
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-----TQELFISNITEKNS 438

Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
           G+Y C   N+     +          E+P+  I  N S+     D     C  E    + 
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTC--EPEAQNT 496

Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVL 271
           T  W          P +++      L   N+   D   Y C  +NS      +   + VL
Sbjct: 497 TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
             P   I      S   G  L L C +   P P  SW                    V  
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI---------NGIPQQHTQVLF 607

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
           IA +  ++ G Y C   N A      I  ++
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  181 bits (460), Expect = 1e-50
 Identities = 60/377 (15%), Positives = 100/377 (26%), Gaps = 72/377 (19%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEG 153
                  +   V + C+    + T  W  +NQ       +       TL +  +T+ D G
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVG 355

Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
            Y C IQN       D   + V     P       +   +  G    + C      P   
Sbjct: 356 PYECGIQNELSVDHSDPVILNV--LYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQ 412

Query: 214 QTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
            +W+    DG       + Q    L  +NI   + G YTC A NSA          +   
Sbjct: 413 YSWLI---DGN------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463

Query: 274 PAV---TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
             +   +I+ +    V   + +   CE   +   T  W         +            
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTL 522

Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
           T+ +V  +DA  Y C  +NS        +T+ V                           
Sbjct: 523 TLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL-------------------------- 556

Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPL 449
                                 P    + P   +   G   N+ C +         W   
Sbjct: 557 --------------------YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSW--- 593

Query: 450 QGYFPSHVVEYNGELRL 466
                    ++   L +
Sbjct: 594 --RINGIPQQHTQVLFI 608

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  177 bits (449), Expect = 4e-49
 Identities = 65/447 (14%), Positives = 113/447 (25%), Gaps = 90/447 (20%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIA------------- 138
           ++ +     +  EG +V +   +         W K  +      +I              
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 139 ---------GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
                      +L+I  I + D G Y   +  +     +     +V   E+P+  I  N 
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV-YPELPKPSISSNN 119

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEG 249
           S+     D     C  E      T  W   +      P +++      L   N+   D  
Sbjct: 120 SKPVEDKDAVAFTC--EPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTA 177

Query: 250 KYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
            Y C  +N        +  ++VL  P          S R GE L L C A   P    SW
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237

Query: 309 VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
                            S     I ++  +++G Y C   NS     +     +    E 
Sbjct: 238 FV---------NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288

Query: 369 GPISPRP------------------------------GADILPDGDEYYRPEPE------ 392
                                                   +          +        
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLS 348

Query: 393 -----EGEYV--------YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA 439
                 G Y                 ++    P   T+ P     +PG   ++ C A   
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN 408

Query: 440 TPISIRWQPLQGYFPSHVVEYNGELRL 466
            P    W         ++ ++  EL +
Sbjct: 409 PPAQYSW-----LIDGNIQQHTQELFI 430

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  174 bits (443), Expect = 3e-48
 Identities = 80/495 (16%), Positives = 136/495 (27%), Gaps = 108/495 (21%)

Query: 18  NALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCN--TYYAPGRWMWLNFYS 75
            +               E+ +   + N+   V +       C   T  A   W W+N  S
Sbjct: 92  KSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW-WVNNQS 150

Query: 76  F------------LSLII-----------ICLA---YLSPQANEVQV-----------TP 98
                         +L +            C       + +++ V +           +P
Sbjct: 151 LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISP 210

Query: 99  RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
              S   G  + + C +  +P A   W  +   Q        + L I  IT  + G Y C
Sbjct: 211 LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-----TQELFIPNITVNNSGSYTC 265

Query: 158 SIQNAQGNVFQDY-ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216
              N+   + +    +I V     P+  I  N S      D   + C  E    + T  W
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEP-PKPFITSNNSNPVEDEDAVALTC--EPEIQNTTYLW 322

Query: 217 IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPA 275
              +      P +++  +   L   ++   D G Y C  +N    +  +   ++VL  P 
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD 382

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
                  Y   RPG  L+L C A   P    SW+          + +         I+++
Sbjct: 383 DPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI---------DGNIQQHTQELFISNI 433

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGE 395
            E ++G Y C   NSA    +     +    E                            
Sbjct: 434 TEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--------------------------- 466

Query: 396 YVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQG 451
                           P         + V+  D     C        +  W    Q L  
Sbjct: 467 ----------------PKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPV 509

Query: 452 YFPSHVVEYNGELRL 466
                +   N  L L
Sbjct: 510 SPRLQLSNGNRTLTL 524

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  173 bits (439), Expect = 1e-50
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 18/285 (6%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIA-GETLIINGITKAD 151
            ++ +  +     G  VT+ C S   + +++W          +  + G TL     T  +
Sbjct: 6   VIEPSGPELVVEPGETVTLRCVS---NGSVEWDGPISPYWTLDPESPGSTLTTRNATFKN 62

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            G Y C+             +I +  ++            T + G  A + C++      
Sbjct: 63  TGTYRCTELEDPM---AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119

Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHV 270
            + + +R          V  +              D   Y C    +  +      ++ V
Sbjct: 120 DSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179

Query: 271 LTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-----IAPFDRNLER 321
             +    P + + PS+ V    GE   + C AT   +     +K        P + + + 
Sbjct: 180 NRVHPEPPQIKLEPSKLV-RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
           +        ++ +V   DAG Y C+  N  GT    +   V    
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  128 bits (322), Expect = 6e-34
 Identities = 45/297 (15%), Positives = 77/297 (25%), Gaps = 63/297 (21%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P I            G+   ++CV        +  W  P +       ++       L  
Sbjct: 5   PVIEPSGP-ELVVEPGETVTLRCVSNG-----SVEWDGPISPY---WTLDPESPGSTLTT 55

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
            N    + G Y C             +++V          ++ V+V  G+   L C  T 
Sbjct: 56  RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115

Query: 301 -RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
                +VS ++              +    + I   +  D+  Y C    +        I
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175

Query: 359 TVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR 418
            + V                                                EPP+I L 
Sbjct: 176 WLKVNRVH-------------------------------------------PEPPQIKLE 192

Query: 419 PVRQTVKPGDIANIRCSAIGA-TPISIRWQ--------PLQGYFPSHVVEYNGELRL 466
           P +     G+ A I CSA  A    ++  +        PL   F  +  +    L L
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  171 bits (436), Expect = 5e-50
 Identities = 70/291 (24%), Positives = 110/291 (37%), Gaps = 26/291 (8%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ-------EQLPPNMIAGETLII-NG 146
             P+ Q    G   +  C++  DP   + W+K  +       E +  +  AG  L I   
Sbjct: 11  KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL 70

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRADI 201
            T  DE VY C  QN+ G +   +A + V          P I + P   +       A +
Sbjct: 71  RTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQ-LKVVERTRTATM 128

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSA 259
            C    G P P  TW +              ++L  G L+  +    D+GKY C+A NSA
Sbjct: 129 LCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187

Query: 260 GKEVM---NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
           G       N Y+ V  +            + PG  + + C A G PMP V W++      
Sbjct: 188 GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG----A 243

Query: 317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
            +L  ++        +      D+  Y C+  +S G  E V  + V+  P+
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPK 294

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  143 bits (362), Expect = 2e-39
 Identities = 69/284 (24%), Positives = 102/284 (35%), Gaps = 65/284 (22%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--- 235
           E PR    P   Q  + G  A   C    G+P P  TW +     K         E    
Sbjct: 5   EPPRFIKEP-KDQIGVSGGVASFVCQAT-GDPKPRVTWNK--KGKKVNSQRFETIEFDES 60

Query: 236 --GVLRFNNIATG-DEGKYTCIAENSAGKEVMNAYIHVL-------TLPAVTITPSEYVS 285
              VLR   + T  DE  Y C+A+NS G+  ++A + VL         P + + P   V 
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV- 119

Query: 286 VRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQ 342
           V      T+ C A+G P P ++W K    + P   N  R +        I S  E+D G+
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN-GRIKQLRSGALQIESSEETDQGK 178

Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402
           Y+C+  NSAG                                             Y+  +
Sbjct: 179 YECVATNSAGV-------------------------------------------RYSSPA 195

Query: 403 NASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
           N  +      PR ++ P+   + PG   NI C A+G+    ++W
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  119 bits (301), Expect = 8e-31
 Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 16/215 (7%)

Query: 78  SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN- 135
            L ++    L      + + P+ +        T+ C ++ +P   I W KD    + P+ 
Sbjct: 95  KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFL-PVDPSA 153

Query: 136 ------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD-KREMPRIRIHPN 188
                  +    L I    + D+G Y C   N+ G  +   A++ V  +   PR  I P 
Sbjct: 154 SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILP- 212

Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
            S   + G   +I CV   G P P   W++        P+      +G          D 
Sbjct: 213 MSHEIMPGGNVNITCVAV-GSPMPYVKWMQ--GAEDLTPED--DMPVGRNVLELTDVKDS 267

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
             YTC+A +S G     A I V +LP        +
Sbjct: 268 ANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 80.6 bits (199), Expect = 5e-17
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 45/182 (24%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
               P     P +      G   +  C+ATG P P V+W K    +          + ++
Sbjct: 3   GEEPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 327 RAVYTIASVR-ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            AV  I  +R   D   Y+C+ +NS G       + V    +                  
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-------------- 107

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                      P I + P  + V+    A + C+A G     I 
Sbjct: 108 --------------------------FPNIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141

Query: 446 WQ 447
           W 
Sbjct: 142 WF 143

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  176 bits (446), Expect = 4e-48
 Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 46/403 (11%)

Query: 85  AYLSPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI----A 138
                 +   Q      +  +   V I C    ++ + ++      +  +P        +
Sbjct: 122 RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 181

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
            +   I     +  G+  C  +    +       + V    +  + + P+      VG++
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEK 241

Query: 199 ADIQCVLEAGEPSPTQTW------------IRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
             + C     E +    +               + D K     E+ + L  L  + +   
Sbjct: 242 LVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMP 304
           D+G YTC A +    +  + ++ V   P V         V    GE + +  +  G P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360

Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAV 362
            + W K   P +       + +  V TI  V E D G Y  I  N    E++  V+++ V
Sbjct: 361 EIKWYKNGIPLE---SNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV 417

Query: 363 EHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE--PPRITLRPV 420
              P+ G  S     D                   Y  G+  +++C+V   PP   +   
Sbjct: 418 YVPPQIGEKSLISPVD------------------SYQYGTTQTLTCTVYAIPPPHHIHWY 459

Query: 421 RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGE 463
            Q  +       +  ++        W+ ++ +   + +E N  
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  165 bits (419), Expect = 1e-44
 Identities = 69/446 (15%), Positives = 114/446 (25%), Gaps = 115/446 (25%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN--MIAGETLII 144
            P             A  G +V I  K    P   IKW K+    L  N  + AG  L I
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIP-LESNHTIKAGHVLTI 385

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS--QTFIVGDRADIQ 202
             +++ D G Y   + N      +    + +     P+I      S   ++  G    + 
Sbjct: 386 MEVSERDTGNYTVILTNPISKE-KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT 444

Query: 203 CVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQE--------------------------- 234
           C +    P P    W     +       +                               
Sbjct: 445 CTVY-AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503

Query: 235 --------LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSV 286
                     V      A      Y C A N  G+       HV   P +T+ P   +  
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD--MQP 561

Query: 287 RPGEPLTLECEATGRPMPTVSWVK------------YIAPFDRNLERDELTSRAVY---- 330
              E ++L C A       ++W K               P  +NL+     +  ++    
Sbjct: 562 TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNST 621

Query: 331 ------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
                  + +    D G Y C+ ++    +   +   +                      
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER----------------- 664

Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISI 444
                                       P IT     QT   G+   + C+A G  P  I
Sbjct: 665 --------------------------VAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 445 RW----QPLQGYFPSHVVEYNGELRL 466
            W    + L       + + N  L +
Sbjct: 699 MWFKDNETLVEDSGIVLKDGNRNLTI 724

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  164 bits (415), Expect = 5e-44
 Identities = 62/433 (14%), Positives = 111/433 (25%), Gaps = 86/433 (19%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQE---------QLPPNMIAGETLI 143
            + +     +    + + I C+       + W   N +             + +  +TL 
Sbjct: 33  RLSIQKDILTIKANTTLQITCRGQ---RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLT 89

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV----GDRA 199
           I  +   D G Y C  +            + V     P I    +      +        
Sbjct: 90  IPKVIGNDTGAYKCFYRETDL---ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
            I C+      + +     P+       +   +         +      G   C A+ + 
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206

Query: 260 GKEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
                  YI V+    +  V ++PS  + +  GE L L C A       + +        
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266

Query: 317 RNLERDELTSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
              ++                     TI  V  SD G Y C   +   T++    V V  
Sbjct: 267 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326

Query: 365 RPEYGPISPRPGADILPDGDEYY-------RPEPE------------------------- 392
           +P     S          G+           P PE                         
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIM 386

Query: 393 ------EGEYVYAVGSN----ASISCSVE-----PPRITLRPVRQ---TVKPGDIANIRC 434
                  G Y   + +N       S  V      PP+I  + +     + + G    + C
Sbjct: 387 EVSERDTGNYT-VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445

Query: 435 SAIGA-TPISIRW 446
           +      P  I W
Sbjct: 446 TVYAIPPPHHIHW 458

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  155 bits (393), Expect = 4e-41
 Identities = 67/421 (15%), Positives = 118/421 (28%), Gaps = 115/421 (27%)

Query: 87  LSPQANEVQVTPRQ-QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------- 137
           +  +  +V ++P        G ++ + C    + +  I ++ +       +         
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278

Query: 138 ---------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
                       TL I+G+T++D+G+Y C+  +          S  V   E P +     
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM---TKKNSTFVRVHEKPFVAFGSG 335

Query: 189 ASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
                    G+R  I      G P P   W +   +G         +   VL    ++  
Sbjct: 336 MESLVEATVGERVRIPAKYL-GYPPPEIKWYK---NGIPLESNHTIKAGHVLTIMEVSER 391

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS----VRPGEPLTLECEATGRP 302
           D G YT I  N   KE  +  + ++      I     +S     + G   TL C     P
Sbjct: 392 DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451

Query: 303 MP-TVSWVK-----------------------------------YIAPFDRNLERDELTS 326
            P  + W                                      I          E  +
Sbjct: 452 PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKN 511

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
           + V T+     + +  YKC   N  G  E+VI+  V                        
Sbjct: 512 KTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT----------------------- 548

Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                                     P ITL+P        +  ++ C+A  +T  ++ W
Sbjct: 549 ------------------------RGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTW 583

Query: 447 Q 447
            
Sbjct: 584 Y 584

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  143 bits (361), Expect = 6e-37
 Identities = 52/346 (15%), Positives = 90/346 (26%), Gaps = 74/346 (21%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE------ 140
           PQ  E  +     S   G+  T+ C   +  P   I W    +E+               
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 141 ---------------------------------TLIINGITKADEGVYICSIQNAQGNVF 167
                                               +         +Y C   N  G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG--- 537

Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP 227
           +    I       P I + P+        +   + C  +        TW +         
Sbjct: 538 RGERVISFHVTRGPEITLQPD--MQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIH 594

Query: 228 DVEV----------------------YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
             E+                        ++ ++   N +  D+G Y C+A++   K+   
Sbjct: 595 VGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC 654

Query: 266 AYIHV----LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER 321
               +       P +T       +   GE + + C A+G P P + W K       +   
Sbjct: 655 VVRQLTVLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
                    TI  VR+ D G Y C   +  G  +      +E   E
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 759

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  131 bits (330), Expect = 7e-33
 Identities = 45/284 (15%), Positives = 84/284 (29%), Gaps = 48/284 (16%)

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
              +++C    A         S+ +D    PR+ I  +   T        I C    G+ 
Sbjct: 8   AVALWLCVETRAAS---VGLPSVSLDL---PRLSIQKD-ILTIKANTTLQITCR---GQR 57

Query: 211 SPTQTWIRPDNDGKFGPDVEVYQE-----LGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
                W+ P+N       VEV +         L    +   D G Y C    +    V+ 
Sbjct: 58  DLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIY 115

Query: 266 AYIHVLTLPAVTITPSE----YVSVRPGEPLTLECEATGRPMPTVSWVKY----IAPFDR 317
            Y+     P +     +    Y++    + + + C  +   +      +Y      P   
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175

Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
            +  D   S+  +TI S   S AG   C  K +  + + ++ + V        +   P  
Sbjct: 176 RISWD---SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP-- 230

Query: 378 DILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRITLR 418
                                +VG    ++C+        I   
Sbjct: 231 ---------------SHGIELSVGEKLVLNCTARTELNVGIDFN 259

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  107 bits (269), Expect = 4e-25
 Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 30/226 (13%)

Query: 83  CLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA--- 138
            +                    E   V++ C         + W K   + LP ++     
Sbjct: 541 RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600

Query: 139 -----------------------GETLIINGITKADEGVYICSIQNAQGNVFQD-YASIQ 174
                                     + +   +  D+G Y+C  Q+ +          + 
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660

Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
           V +R  P I  +   +QT  +G+  ++ C    G P P   W + +        + +   
Sbjct: 661 VLERVAPTITGNLE-NQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDG 718

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
              L    +   DEG YTC A +  G   + A+  +      T   
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 92.1 bits (228), Expect = 6e-20
 Identities = 34/260 (13%), Positives = 65/260 (25%), Gaps = 67/260 (25%)

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
               + C+   +A   + +     L LP ++I       ++    L + C         +
Sbjct: 8   AVALWLCVETRAASVGLPSV---SLDLPRLSIQKDILT-IKANTTLQITCRGQ----RDL 59

Query: 307 SWVKY-----IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361
            W+               E  +       TI  V  +D G YKC  + +       + V 
Sbjct: 60  DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119

Query: 362 VEHRPEYGPISPR---------------------------------PGADILPDGDEY-- 386
               P    +S +                                 P    +PDG+    
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179

Query: 387 --------YRPEPE-EGEYV-YAVGSNASISCSV--------EPPRITLRPVR-QTVKPG 427
                           G     A  ++ S    +            + L P     +  G
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239

Query: 428 DIANIRCSAIGATPISIRWQ 447
           +   + C+A     + I + 
Sbjct: 240 EKLVLNCTARTELNVGIDFN 259

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  165 bits (418), Expect = 1e-47
 Identities = 42/284 (14%), Positives = 84/284 (29%), Gaps = 18/284 (6%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADE 152
           ++ +  +     G+ VT+ C     + +++W                  L  N  T  + 
Sbjct: 7   IEPSVPELVVKPGATVTLRCVG---NGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63

Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
           G Y C+            A+I +  ++  R                A + C+L       
Sbjct: 64  GTYRCTEPGDPL---GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120

Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVL 271
             + +R             +        +         Y C A     K + ++  + V 
Sbjct: 121 GVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180

Query: 272 TL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-----IAPFDRNLERD 322
            +    PA+T+ P+E V    GE   + C A+   +    ++++       P   +   +
Sbjct: 181 KVIPGPPALTLVPAELV-RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
                    +  V    AG Y C+  N  G     +   V    
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  121 bits (305), Expect = 1e-31
 Identities = 42/276 (15%), Positives = 67/276 (24%), Gaps = 59/276 (21%)

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-- 235
             +P I            G    ++CV        +  W  P       P   +Y +   
Sbjct: 2   GSIPVIEPSVP-ELVVKPGATVTLRCVGNG-----SVEWDGPP-----SPHWTLYSDGSS 50

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
            +L  NN    + G Y C             +++V          ++ V V   +   L 
Sbjct: 51  SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110

Query: 296 CEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-T 353
           C  T       VS V+              +    +TI   +   +  Y+C         
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV 170

Query: 354 EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPP 413
               I + V+                                                PP
Sbjct: 171 MSISIRLKVQKVIPG-------------------------------------------PP 187

Query: 414 RITLRPVRQTVKPGDIANIRCSAIGA-TPISIRWQP 448
            +TL P       G+ A I CSA        +  Q 
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 25/201 (12%), Positives = 49/201 (24%), Gaps = 61/201 (30%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
           ++P +  +  E V V+PG  +TL C   G    +V W     P   +       S ++ +
Sbjct: 3   SIPVIEPSVPELV-VKPGATVTLRCVGNG----SVEWDG---PPSPHWTLYSDGSSSILS 54

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
             +    + G Y+C            I + V+                            
Sbjct: 55  TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK---------------------------- 86

Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGATP-ISIRWQPL 449
                              +P R      +   V     A + C          +    +
Sbjct: 87  -------------------DPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRV 127

Query: 450 QGYFPS----HVVEYNGELRL 466
           +G        +         +
Sbjct: 128 RGRPLMRHTNYSFSPWHGFTI 148

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------PNMIAGETL 142
            + + P +     G    I C  S+       + + N  +L                 TL
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTL 247

Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
            ++ +     G Y C   N QG       S+     E      H +
Sbjct: 248 NLDQVDFQHAGNYSCVASNVQGK---HSTSMFFRVVESAGNSHHHH 290

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  165 bits (420), Expect = 8e-47
 Identities = 70/411 (17%), Positives = 118/411 (28%), Gaps = 93/411 (22%)

Query: 94  VQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN------MIAGETLIIN 145
           ++  P +    E +   +EC  + ND      W KD +                 +L+  
Sbjct: 9   LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS-YNWQEHNAALRKDEGSLVFL 67

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
               +DEG Y C  +   G       S +     +       +  +T I G    + CVL
Sbjct: 68  RPQASDEGHYQCFAETPAGVASSRVISFRKT--YLIASPAKTH-EKTPIEGRPFQLDCVL 124

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVY------QELGVLRFNNIA---TGDEGKYTCIAE 256
               P P  TW +  +      DV  +         G L F  +      D  KY C A+
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184

Query: 257 NSAG-KEVMNAYIHVLTL----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPT 305
           N+A  +EV+     +  +          P       + +  + G+   + C     PM  
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKD-MMAKAGDVTMIYCMYGSNPMGY 243

Query: 306 VSWVKYIAPFDRN----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT-EEKVITV 360
            ++ K     + N    + R   TS       +    D G Y C   N  G  ++  + +
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303

Query: 361 AVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPV 420
            V                                                  P+   +P 
Sbjct: 304 TVV-----------------------------------------------SAPKYEQKPE 316

Query: 421 RQ-TVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
           +   VK G    I C   G    ++ W    +PL           +  L +
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---GGRATVTDSGLVI 364

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  159 bits (404), Expect = 2e-44
 Identities = 59/298 (19%), Positives = 98/298 (32%), Gaps = 39/298 (13%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE----------TLI 143
               +++  EG    ++C   +  P   I W K      P   +              L 
Sbjct: 105 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164

Query: 144 INGITKADE---GVYICSIQNAQGNVFQDYASIQV--------DKREMPRIRIHPNASQT 192
              +TK D      Y+C+ +NA  +        ++          +  P  +        
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK-DMM 223

Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDE 248
              GD   I C+     P     + +   D    P+  + +        L F      DE
Sbjct: 224 AKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282

Query: 249 GKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
           G YTC  +N  GK   +   + V++ P     P + + V+ G+ +T+ C+ TG P P V 
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342

Query: 308 WVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
           W      ++     +    L       I  V+  D G Y C   N  G +     V V
Sbjct: 343 WSHNAKPLSGGRATVTDSGL------VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  123 bits (311), Expect = 2e-31
 Identities = 56/309 (18%), Positives = 86/309 (27%), Gaps = 60/309 (19%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQEL-G 236
           + P ++  P A   F   +   ++C++E G     + +W +      +       ++  G
Sbjct: 5   KYPVLKDQP-AEVLFRENNPTVLECIIE-GNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
            L F      DEG Y C AE  AG             L A      E  +   G P  L+
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE-KTPIEGRPFQLD 121

Query: 296 CE-ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT------IASVRE---SDAGQYKC 345
           C      P P ++W K ++  D N +  +   R             V +   SD  +Y C
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVC 181

Query: 346 IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNAS 405
             KN+A  EE V+                                          G    
Sbjct: 182 TAKNAAVDEEVVLV------------------------------------EYEIKGVTKD 205

Query: 406 ISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGY----FPSHV 457
            S     P           K GD+  I C           +    + + G        H 
Sbjct: 206 NSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN 265

Query: 458 VEYNGELRL 466
                 L  
Sbjct: 266 RTSGKRLLF 274

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 30/183 (16%), Positives = 43/183 (23%), Gaps = 52/183 (28%)

Query: 269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNL-ERDELTS 326
            V   P +   P+E V  R   P  LEC   G       SW K    ++           
Sbjct: 2   PVDKYPVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDE 385
                    + SD G Y+C  +  AG    +VI+                          
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT---------------------- 98

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SI 444
                                           +   +T   G    + C    A P   I
Sbjct: 99  -------------------------YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133

Query: 445 RWQ 447
            W+
Sbjct: 134 TWK 136

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  165 bits (418), Expect = 2e-46
 Identities = 77/399 (19%), Positives = 129/399 (32%), Gaps = 81/399 (20%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-------IAGETLIIN---- 145
            +         + IEC+   +P+ +  W+++++                  TL+I+    
Sbjct: 24  AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRF-FNIAKDPRVSMRRRSGTLVIDFRSG 82

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
           G  +  EG Y C  +N  G    +   +QV   + P              G    +QC  
Sbjct: 83  GRPEEYEGEYQCFARNKFGTALSNRIRLQV--SKSPLWPKENLDPVVVQEGAPLTLQCNP 140

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD-EGKYTCIAENSAGKEV- 263
             G PSP   W+    +             G L F+N+   D +  Y+C A       + 
Sbjct: 141 PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200

Query: 264 --MNAYIHVLTLPAVTITP---------SEYVSVRPGEPLTLECEATGRPMPTVSWVKYI 312
                 + VLT   V             +    V  G  L LEC A+G P P ++W K  
Sbjct: 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG 260

Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
                +  + E  ++A+  I +V E D+G+Y C+  N  G+    I+V V+         
Sbjct: 261 GDLPSDKAKFENFNKAL-RITNVSEEDSGEYFCLASNKMGSIRHTISVRVK--------- 310

Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
                                                   P     P    + PG+   +
Sbjct: 311 --------------------------------------AAPYWLDEPKNLILAPGEDGRL 332

Query: 433 RCSAIGATPISIRW----QPLQGYFPSHVVEY-NGELRL 466
            C A G    +++W    +PLQ   P+   E     +  
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF 371

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  163 bits (415), Expect = 5e-46
 Identities = 58/289 (20%), Positives = 96/289 (33%), Gaps = 26/289 (8%)

Query: 94  VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
            +         EG+ +T++C      PS  I W   + E +  +          L  + +
Sbjct: 119 PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNV 178

Query: 148 TKAD-EGVYICSIQNAQGNVFQDYASIQVD-------KREMPRIRIHPN--ASQTFIVGD 197
              D +  Y C+ +    +  Q      +            P         +SQ  + G 
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238

Query: 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAE 256
              ++C+   G P+P   W +    G    D   ++     LR  N++  D G+Y C+A 
Sbjct: 239 DLLLECIAS-GVPTPDIAWYK--KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLAS 295

Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
           N  G       + V   P     P   + + PGE   L C A G P PTV W+     + 
Sbjct: 296 NKMGSIRHTISVRVKAAPYWLDEPKN-LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354

Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
               N   +   +         + S    Y+C   N  G       V+V
Sbjct: 355 SAPPN--PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  124 bits (313), Expect = 9e-32
 Identities = 61/308 (19%), Positives = 92/308 (29%), Gaps = 47/308 (15%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DGKFGPD 228
            SIQ +  + P I             D   I+C  + G P+P+  W R     +    P 
Sbjct: 7   PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPR 65

Query: 229 VEVYQELGVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEY 283
           V + +  G L  +  + G     EG+Y C A N  G  +     + V   P       + 
Sbjct: 66  VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125

Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA-G 341
           V V+ G PLTL+C    G P P + W+          +R           ++V   D   
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185

Query: 342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVG 401
            Y C  +       +              ++ R  + + P G                  
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG------------------ 227

Query: 402 SNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPS---HVV 458
                               Q V  G    + C A G     I W    G  PS      
Sbjct: 228 ----------------TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE 271

Query: 459 EYNGELRL 466
            +N  LR+
Sbjct: 272 NFNKALRI 279

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  122 bits (307), Expect = 7e-31
 Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 12/189 (6%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLI 143
           P     Q T   Q    G  + +EC ++  P+  I W K   + LP +        + L 
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD-LPSDKAKFENFNKALR 278

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
           I  +++ D G Y C   N  G++     +I V  +  P     P  +     G+   + C
Sbjct: 279 ITNVSEEDSGEYFCLASNKMGSI---RHTISVRVKAAPYWLDEPK-NLILAPGEDGRLVC 334

Query: 204 VLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
               G P PT  W+          P+         + F +        Y C   N  G  
Sbjct: 335 RAN-GNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393

Query: 263 VMNAYIHVL 271
           + NA++ VL
Sbjct: 394 LANAFVSVL 402

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  167 bits (424), Expect = 2e-46
 Identities = 65/425 (15%), Positives = 119/425 (28%), Gaps = 84/425 (19%)

Query: 46  EVTVYEGGDAELKCNTYYAPG--RWMW-----LNFYSFLSLII-----------ICLA-- 85
           ++ V  G +  L C     PG  +W +      N       I             C    
Sbjct: 45  DLIVRVGDEIRLLCT---DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH 101

Query: 86  ------YLS-PQANEVQVTPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNM- 136
                 Y+      ++ +  R     E +   + C   DP  T         + LP ++ 
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161

Query: 137 ----IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQ 191
                    +I +           CS+     +V  +   ++V    +   +     AS 
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221

Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-------YQELGVLRFNNIA 244
               G+   + C ++    S   TW R ++  K              Y+    L  ++  
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281

Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRP 302
             D G + C A N+ G   +   + V+    + I P  +  V V  GE + L  E    P
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341

Query: 303 MPT-VSWVK-------YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
            P    W+            + ++     +   +   +  ++ ++ G Y  +  NS    
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401

Query: 355 EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE--- 411
                V V  +P    I                               N  + C      
Sbjct: 402 AIAFNVYVNTKP---EILTYD------------------------RLVNGMLQCVAAGFP 434

Query: 412 PPRIT 416
            P I 
Sbjct: 435 EPTID 439

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  164 bits (417), Expect = 2e-45
 Identities = 58/311 (18%), Positives = 92/311 (29%), Gaps = 48/311 (15%)

Query: 94  VQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPP-----------NMIAGE 140
           V V+       EG + T+ C  K    S    W ++N +               N     
Sbjct: 214 VSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQA 273

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV--GDR 198
           TL I+     D GV++C   N  G+      +  ++  +   I I P  + T  V  G+ 
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSA---NVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330

Query: 199 ADIQCVLEAGEPSPTQ-TWIRPD-------NDGKFGPDVEVYQELGVLRFNNIATGDEGK 250
            D+    E   P P    WI  +        D     +    + +  L    +   + G 
Sbjct: 331 VDLIVEYE-AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389

Query: 251 YTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
           YT +  NS     +   ++V T P +                 L+C A G P PT+ W  
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYD-------RLVNGMLQCVAAGFPEPTIDWYF 442

Query: 311 YIAPFDRNLER--------------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
                 R                           +I S      G  +C   N  G    
Sbjct: 443 CPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSA 502

Query: 357 VITVAVEHRPE 367
               A +   +
Sbjct: 503 YFNFAFKGNNK 513

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  154 bits (390), Expect = 1e-41
 Identities = 58/424 (13%), Positives = 119/424 (28%), Gaps = 93/424 (21%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
           +           G ++ + C        +KW+ +  +    N       I       + G
Sbjct: 39  IHPGKSDLIVRVGDEIRLLCT---DPGFVKWTFEILD--ETNENKQNEWITEKAEATNTG 93

Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
            Y C+ ++          SI V  R+  ++ +    S      +   ++C     +P  T
Sbjct: 94  KYTCTNKHGLS------NSIYVFVRDPAKLFLVDR-SLYGKEDNDTLVRC--PLTDPEVT 144

Query: 214 QTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHV 270
              ++         D+      + G++  +           C  +      +     + V
Sbjct: 145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204

Query: 271 L----TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVK-------YIAPFDRN 318
                 +P V+++ + Y+ +R GE  T+ C           +W +              +
Sbjct: 205 RPAFKAVPVVSVSKASYL-LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263

Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP----- 373
                   +A  TI+S R +D+G + C   N+ G+     T+ V  +  +  I P     
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG-FINIFPMINTT 322

Query: 374 ---------------------------RPGADILPDGDEYYRPEPE-------------- 392
                                                ++Y + E E              
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382

Query: 393 ----EGEYV-YAVGSNASISCSVE-----PPRITLRPVRQTVKPGDIANIRCSAIGATPI 442
                G Y      S+ + + +        P I       T        ++C A G    
Sbjct: 383 KGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEIL------TYDRLVNGMLQCVAAGFPEP 436

Query: 443 SIRW 446
           +I W
Sbjct: 437 TIDW 440

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 99.4 bits (247), Expect = 2e-22
 Identities = 27/252 (10%), Positives = 60/252 (23%), Gaps = 63/252 (25%)

Query: 247 DEGKYTCI----AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
               + C+         G    +      + P++    S+ + VR G+ + L C   G  
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLI-VRVGDEIRLLCTDPG-- 62

Query: 303 MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI---- 358
              V W          L+      +  +       ++ G+Y C  K+       V     
Sbjct: 63  --FVKWTF------EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDP 114

Query: 359 ----------------TVAVEHRPEYGPISP----RPGADILPDGDEY------------ 386
                              V        ++           LP    +            
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKS 174

Query: 387 YRPEPEEGEYV----YAVGSNASISCSVE-------PPRITLRPVRQTVKPGDIANIRCS 435
            +                 S  S    ++        P +++      ++ G+   + C+
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234

Query: 436 AIGA-TPISIRW 446
                + +   W
Sbjct: 235 IKDVSSSVYSTW 246

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 94.0 bits (233), Expect = 1e-20
 Identities = 34/223 (15%), Positives = 57/223 (25%), Gaps = 38/223 (17%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPP----------- 134
               N   +        +G  V +  +  +       +W   N+                
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369

Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
           N+     L +  +   + G Y   + N+  N      +  V     P I  +        
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVN---AAIAFNVYVNTKPEILTYD------- 419

Query: 195 VGDRADIQCVLEAGEPSPTQTW-------------IRPDNDGKFGPDVEVYQELGV-LRF 240
                 +QCV   G P PT  W             + P +          + +L V    
Sbjct: 420 RLVNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSI 478

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
           ++ A    G   C A N  GK                I P  +
Sbjct: 479 DSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHH 521

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 57.0 bits (137), Expect = 6e-09
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 22/118 (18%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSK-------DNQEQLPPNMIAGE---- 140
            V   P   +        ++C +   P  TI W          +   LP ++        
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467

Query: 141 -------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQ 191
                     I+       G   C   N  G      A      +   + +IHP+   
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK---TSAYFNFAFKGNNKEQIHPHHHH 522

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 41/154 (26%)

Query: 336 RESDAGQYKCI----GKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD------- 384
               A  + C+     +   G+ +  ++      P    I P     I+  GD       
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPS---IHPGKSDLIVRVGDEIRLLCT 59

Query: 385 -----EYYRPEPEE-------------------GEY--VYAVGSNASISCSV-EPPRITL 417
                ++     +E                   G+Y      G + SI   V +P ++ L
Sbjct: 60  DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL 119

Query: 418 RPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
                  K  +   +RC        +   +  QG
Sbjct: 120 VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQG 153

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  160 bits (405), Expect = 2e-45
 Identities = 54/320 (16%), Positives = 96/320 (30%), Gaps = 54/320 (16%)

Query: 98  PRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPN---MIAGETLIINGITKADE 152
             Q     G  V + C      P     W KD    L P+   ++  + L +   +  D 
Sbjct: 15  QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTG-LVPSERVLVGPQRLQVLNASHEDS 73

Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS---------------------Q 191
           G Y C  +  Q  +      +               A                       
Sbjct: 74  GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLL 133

Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATG 246
                +    +C    G P+P+ +W++  N  +F  +     +++  +   L   ++   
Sbjct: 134 AVPAANTVRFRCPAA-GNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
           D G YTC+ EN  G       + VL      P +        +   G  +   C+     
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250

Query: 303 MPTVSWVKYIAPFDRNLERDELTSRAVY---------------TIASVRESDAGQYKCIG 347
            P + W+K++      +  D      V                ++ +V   DAG+Y C+ 
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310

Query: 348 KNSAGTEEKVITVAVEHRPE 367
            NS G       + V    E
Sbjct: 311 GNSIGFSHHSAWLVVLPAEE 330

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  128 bits (323), Expect = 1e-33
 Identities = 49/296 (16%), Positives = 76/296 (25%), Gaps = 71/296 (23%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
           E+P           F  GD  ++ C    G P     W++  +     P   V      L
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK--DGTGLVPSERVLVGPQRL 63

Query: 239 RFNNIATGDEGKYTCIAENSAG---------------------KEVMNAYIHVLTLPAVT 277
           +  N +  D G Y+C    +                       ++           P  T
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123

Query: 278 ITPS---EYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYT 331
                  + ++V     +   C A G P P++SW+K         R         +    
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
           + SV  SD G Y C+ +N  G+  +  T+ V  R                          
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS------------------------- 218

Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
                               P      P  QT   G      C         I+W 
Sbjct: 219 -----------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  117 bits (295), Expect = 9e-30
 Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 95  QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIING 146
           ++  +  + P  + V   C +  +P+ +I W K+ +E    + I G        +L++  
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 186

Query: 147 ITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
           +  +D G Y C ++N  G++ Q Y   +       P ++    A+QT ++G   +  C +
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246

Query: 206 EAGEPSPTQTWIRPD--NDGKFGPDVEVY-------------QELGVLRFNNIATGDEGK 250
              +  P   W++    N  K GPD   Y             +EL VL  +N+   D G+
Sbjct: 247 Y-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305

Query: 251 YTCIAENSAGKEVMNAYIHVLTLP 274
           YTC+A NS G    +A++ VL   
Sbjct: 306 YTCLAGNSIGFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 76.6 bits (188), Expect = 1e-15
 Identities = 32/208 (15%), Positives = 49/208 (23%), Gaps = 44/208 (21%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDE--LTSRAV 329
           +P       E +    G+ + L C    G PM    WVK        L   E  L     
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD----GTGLVPSERVLVGPQR 62

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
             + +    D+G Y C  + +            +                          
Sbjct: 63  LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD-------------------------- 96

Query: 390 EPEEGEYVYAVGSNASISCSVEPPRIT----LRPVRQTVKPGDIANIRCSAIGATPISIR 445
            P  G+                 P  T    +      V   +    RC A G    SI 
Sbjct: 97  APSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSIS 156

Query: 446 W----QPLQG---YFPSHVVEYNGELRL 466
           W    +  +G        +      L +
Sbjct: 157 WLKNGREFRGEHRIGGIKLRHQQWSLVM 184

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  162 bits (411), Expect = 3e-45
 Identities = 50/347 (14%), Positives = 103/347 (29%), Gaps = 50/347 (14%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----- 140
           L PQ++              + +T++   +   + +  W   +           +     
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
           +++I  +T+   G Y+  IQ+   N         V  R      +         + ++  
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATN---YTILFTVSIRNTLLYTLRR--PYFRKMENQDA 158

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSA 259
           + C+ E   P P   W+  D+ G+   +             + +   D     C A N  
Sbjct: 159 LVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNEL 214

Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK---YIAPF 315
           G+E    +   L     T  P   + ++ GEPL + C+A        ++W      +   
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG 272

Query: 316 DRNLERDELTSRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
           +        T+R +       ++SV  +D G Y C          +   V +  +     
Sbjct: 273 NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKG---- 325

Query: 371 ISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP-PRIT 416
                          +        +Y          S   +  P+I 
Sbjct: 326 ---------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  128 bits (322), Expect = 8e-33
 Identities = 35/376 (9%), Positives = 91/376 (24%), Gaps = 67/376 (17%)

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
            N  +      Y    ++ +             + +     ++  A+    V     +Q 
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGCAL-------RPQSSGT-VYEAAAVEVDVSASITLQV 70

Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIATGDEGKYTCIAENSAGKE 262
           +++    + +  W+   +     P  ++    +  +    +     G+Y    ++ A   
Sbjct: 71  LVD-APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129

Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRNLER 321
            +   + +      T+    +  +       L C +   P P V WV           E 
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVEWVLCDSQGESCKEES 187

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK---VITVAVEHRPEYGPISPRPGAD 378
             +  +    +    E      +C  +N  G E      I +    +     +  + G  
Sbjct: 188 PAVVKKEEKVL---HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 379 I-----------------------LPDGDEYYRPEPEEGEYVYAVGS------------- 402
           +                       L +G+ +          +  +               
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304

Query: 403 ---------NASISCSV-EPPRITLRPVRQT--VKPGDIANIRCSAIGATPISIRWQPLQ 450
                    + S   ++ E   I      +   +   +             I   W   +
Sbjct: 305 YTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364

Query: 451 GYFPSHVVEYNGELRL 466
             FP      +    +
Sbjct: 365 KSFPCEQKGLDNGYSI 380

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 99.0 bits (246), Expect = 1e-22
 Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 63/279 (22%)

Query: 247 DEGKYTCI----AENSAGKEVMNAYIHVLTLPA-----------VTITPSEYVSVRPGEP 291
           D     C+      N +     ++Y  V   P             T+  +  V V     
Sbjct: 6   DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKN 349
           +TL+         +  WV   +  +      +L +R V +  I  + E+ AG+Y    ++
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQ-PHFDLQNRGVVSMVILKMTETQAGEYLLFIQS 124

Query: 350 SAGTEEKVITVAVEHRPEYGPISP--------------------------RPGADILPDG 383
            A     + TV++ +   Y    P                             +      
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 384 DEYYR---------PEPEEGEYV----YAVGSNASISCSVE-PPRITLRPVRQTVKPGDI 429
           +E             E    +        +G   +   +++          +  +K G+ 
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 430 ANIRCSAIGATP-ISIRW----QPLQGYFPSHVVEYNGE 463
             IRC A+       + W    + L+      +  Y+  
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN 283

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  158 bits (402), Expect = 4e-45
 Identities = 62/315 (19%), Positives = 104/315 (33%), Gaps = 51/315 (16%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIA----GETLIINGITK 149
           V            V ++CK  +      I W KD +E              TL+I   +K
Sbjct: 11  VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 70

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA-- 207
            D G+Y   +++ +G   +D + +++       + +     +  +      IQ   E   
Sbjct: 71  KDAGIYEVILKDDRG---KDKSRLKLVDEAFKELMMEV-CKKIALSATDLKIQSTAEGIQ 126

Query: 208 -------GEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIATGDEGKYTCIA 255
                          W     +G    +   V+         L+ N     D+GKY    
Sbjct: 127 LYSFVTYYVEDLKVNWSH---NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183

Query: 256 ENSAGKEVMNAYIHVLTL--------------------PAVTITPSEYVSVRPGEPLTLE 295
            +          +                           V     + V+++ G+ L L 
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243

Query: 296 CEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           C   G P P VSW+K    +A  D    + E    A +TI  V  +D+G+Y  + KN  G
Sbjct: 244 CNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 303

Query: 353 TEEKVITVAVEHRPE 367
           +E    TV+V   PE
Sbjct: 304 SETSDFTVSV-FIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  118 bits (298), Expect = 3e-30
 Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 47/287 (16%)

Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
           +D    P    +   S          ++C +   +      W +  ++ +   D +   +
Sbjct: 2   IDPFTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFK 57

Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL 292
            G+  L     +  D G Y  I ++  GK+     +       + +   +         L
Sbjct: 58  DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK-KIALSATDL 116

Query: 293 TLECEATGR----------PMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESD 339
            ++  A G               V+W      I      ++      +    I     +D
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-SDRVKTGVTGEQIWLQINEPTPND 175

Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYA 399
            G+Y     +     +K + ++ +   E      R     + + +               
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN--------------- 220

Query: 400 VGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                          +   P   T++ G   N+ C+  G  P  + W
Sbjct: 221 -----------RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 95.4 bits (237), Expect = 5e-22
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 27/211 (12%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP-PNMIAGE----- 140
           +  +        + QS  EG Q+            + WS +         +  G      
Sbjct: 105 VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI 164

Query: 141 TLIINGITKADEGVYICSIQNAQGNV-----------------FQDYASIQVDKREMPRI 183
            L IN  T  D+G Y+  + + +                    FQ      + ++   R+
Sbjct: 165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224

Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRF 240
                   T   G   ++ C +  G+P P  +W++ +          +  E G       
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTI 283

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           N ++T D GKY  + +N  G E  +  + V 
Sbjct: 284 NGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  158 bits (402), Expect = 3e-44
 Identities = 60/294 (20%), Positives = 97/294 (32%), Gaps = 39/294 (13%)

Query: 95  QVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQEQLPPNMIAGE--------TL 142
           +    ++    G+   I+C       D    + W  D +E   P               L
Sbjct: 107 EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGEL 166

Query: 143 IINGITKAD-EGVYICSIQNAQGNVFQDYASIQV------DKREMPRIRIHPNASQTFIV 195
            I  +   D    Y C  ++      +  A+              PR           +V
Sbjct: 167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV 226

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDEGKY 251
                + C  + G P+P+  W +          V +   +    G L   +    D GKY
Sbjct: 227 AHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285

Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK- 310
            C+  NS G E +   + V    +  I P    +V  G P    C+ TG P+ TVSW+K 
Sbjct: 286 LCVVNNSVGGESVETVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQYTGNPIKTVSWMKD 344

Query: 311 --YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
              I   +  L            I SV++ D G Y+C  +N   + E    + +
Sbjct: 345 GKAIGHSESVL-----------RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  155 bits (394), Expect = 4e-43
 Identities = 62/381 (16%), Positives = 112/381 (29%), Gaps = 82/381 (21%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGIT--- 148
             +      +   IECK S +P   I W + +   +        + +   L+        
Sbjct: 11  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 70

Query: 149 ---KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
              +    VY C  +N  G++      ++             N  +  I G+ A I+C++
Sbjct: 71  YRQEVHAQVYACLARNQFGSIISRDVHVRAV--VAQYYEADVN-KEHVIRGNSAVIKCLI 127

Query: 206 EA--GEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATGD-EGKYTCIAENS 258
            +   +     +W   + +  F         +    G L    +   D    Y C  ++ 
Sbjct: 128 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 187

Query: 259 AGKEV---MNAYIHVLTLPAVTITP------SEYVSVRPGEPLTLECEATGRPMPTVSWV 309
              E          V+T P  +  P       + + +     ++L C A G P P+  W 
Sbjct: 188 LTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247

Query: 310 KYI--APFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
           K+I      + +  ++   +   T  I      D+G+Y C+  NS G E     + V   
Sbjct: 248 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-- 305

Query: 366 PEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVK 425
                                                         P    + P  QTV 
Sbjct: 306 ---------------------------------------------APLSAKIDPPTQTVD 320

Query: 426 PGDIANIRCSAIGATPISIRW 446
            G  A   C   G    ++ W
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSW 341

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  112 bits (281), Expect = 2e-27
 Identities = 52/312 (16%), Positives = 84/312 (26%), Gaps = 67/312 (21%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---GV 237
           P     P     F     A+I+C    G P P   WIR  +DG    DV   +++   G 
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKAS-GNPMPEIIWIR--SDGTAVGDVPGLRQISSDGK 60

Query: 238 LRFNNI------ATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGE 290
           L F                Y C+A N  G  +  + ++  +         ++   V  G 
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRGN 119

Query: 291 PLTLECEA---TGRPMPTVSWVK----YIAPFDRNLERDELTSRAVYTIASVRESDA-GQ 342
              ++C         +  VSW         P      +  +       I  V   D    
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179

Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402
           Y+C  K+    E ++              S   G  ++ +                    
Sbjct: 180 YQCRTKHRLTGETRL--------------SATKGRLVITEPIS----------------- 208

Query: 403 NASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFP-------- 454
                 S  P    L      +      ++ C A G    S RW                
Sbjct: 209 ------SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262

Query: 455 SHVVEYNGELRL 466
             V + +G L +
Sbjct: 263 DRVKQVSGTLII 274

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
             ++ P  Q+   G      C+   +P  T+ W KD +  +  +      L I  + K D
Sbjct: 309 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-AIGHS---ESVLRIESVKKED 364

Query: 152 EGVYICSIQNAQGNVFQDYASIQV 175
           +G+Y C ++N + +  +  A +++
Sbjct: 365 KGMYQCFVRNDRESA-EASAELKL 387

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  160 bits (406), Expect = 7e-44
 Identities = 48/348 (13%), Positives = 100/348 (28%), Gaps = 50/348 (14%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----- 140
           L PQ++              + +T++   +   + +  W   +           +     
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
           +++I  +T+   G Y+  IQ+   N         V  R      +         + ++  
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATN---YTILFTVSIRNTLLYTLRR--PYFRKMENQDA 158

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
           + C+ E   P P   W+  D+ G+   +          +   +         C A N  G
Sbjct: 159 LVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEK--VLHELFGTDIRCCARNELG 215

Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKY---IAPFD 316
           +E    +   + L     T    + ++ GEPL + C+A        ++W      +   +
Sbjct: 216 RECTRLF--TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273

Query: 317 RNLERDELTSRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
                   T+R +       ++SV  +D G Y C              V +  +      
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG----- 325

Query: 372 SPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT 416
                         +        +Y          S   +     R T
Sbjct: 326 --------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  159 bits (402), Expect = 3e-43
 Identities = 49/307 (15%), Positives = 83/307 (27%), Gaps = 46/307 (14%)

Query: 95  QVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN------------MIAGE 140
           Q T  Q     G  + I CK    +    + W  +N+     N            MI   
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL 290

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRI-HPNASQTFIVGDRA 199
              ++ + + D G Y CS             S  V   E   I   + +        +  
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVEKGFINATNSSEDYEIDQYEEF 344

Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
                 +   P    TW    +   F  + +       +          G+Y   AEN  
Sbjct: 345 CFSVRFK-AYPQIRCTWTF--SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401

Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL 319
            +      +++   P V         +         C + G P+P+ +W K         
Sbjct: 402 AQFTKMFTLNIRRKPQV---------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452

Query: 320 E------RDELTSRAVY-------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
           E       +   +R V+       T+           KC   NS GT  + I +      
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512

Query: 367 EYGPISP 373
            +     
Sbjct: 513 PFIQDGG 519

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  158 bits (401), Expect = 4e-43
 Identities = 49/382 (12%), Positives = 98/382 (25%), Gaps = 77/382 (20%)

Query: 85  AYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPNMIAGET 141
             +S +   +    R       +Q  + C S   P   ++W   +   E       A   
Sbjct: 133 FTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
                + +       C  +N  G       +I +   + P+  +         VG+   I
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDL--NQTPQTTLPQL---FLKVGEPLWI 247

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--------YQELGVLRFNNIATGDEGKYTC 253
           +C           TW   +   + G   E+           +     +++A  D G YTC
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307

Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKYI 312
            +     +   +A + ++    +  T  SE   +   E           P    +W    
Sbjct: 308 SSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364

Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
             F    E+  L +    +     +   G+Y    +N      K+ T+ +          
Sbjct: 365 KSFPC--EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR--------- 413

Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
                                                   P++        +     +  
Sbjct: 414 --------------------------------------RKPQV--------LAEASASQA 427

Query: 433 RCSAIGATPISIRWQPLQGYFP 454
            C + G    S  W+      P
Sbjct: 428 SCFSDGYPLPSWTWKKCSDKSP 449

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  130 bits (329), Expect = 3e-33
 Identities = 36/375 (9%), Positives = 96/375 (25%), Gaps = 65/375 (17%)

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
            N  +      Y    ++ +             + +     ++  A+    V     +Q 
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGCAL-------RPQSSGT-VYEAAAVEVDVSASITLQV 70

Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAGKE 262
           +++    + +  W+   +     P  ++  + +  +    +     G+Y    ++ A   
Sbjct: 71  LVD-APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129

Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD 322
            +   + +      T+    Y      +   L C +   P P V W   +        ++
Sbjct: 130 TILFTVSIRNTLLYTLRRP-YFRKMENQD-ALVCISESVPEPIVEW--VLCDSQGESCKE 185

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGP----------- 370
           E  +        + E      +C  +N  G E  ++ T+ +   P+              
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245

Query: 371 --------ISPRP------GADILPDGDEYYRPEPEEGEYVYAVG----SNASISCS--- 409
                   ++             L +G+ +          +  +     S+ + + +   
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 410 ----------------VEPPRITL--RPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
                           VE   I          +   +             I   W   + 
Sbjct: 306 TCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365

Query: 452 YFPSHVVEYNGELRL 466
            FP      +    +
Sbjct: 366 SFPCEQKGLDNGYSI 380

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 89.4 bits (221), Expect = 3e-19
 Identities = 28/208 (13%), Positives = 48/208 (23%), Gaps = 31/208 (14%)

Query: 98  PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEG 153
                  +  +     +    P     W+   +   P     +  G ++      K   G
Sbjct: 333 SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLDNGYSISKFCNHKHQPG 391

Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
            YI   +N             ++ R  P++    +ASQ           C  + G P P+
Sbjct: 392 EYIFHAENDDAQF---TKMFTLNIRRKPQVLAEASASQ---------ASCFSD-GYPLPS 438

Query: 214 QTW-------------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
            TW             I      +        Q +     N           C A NS G
Sbjct: 439 WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG 498

Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRP 288
                  ++                   
Sbjct: 499 TSCETILLNSPGPFPFIQDGGTKHHHHH 526

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  154 bits (391), Expect = 7e-44
 Identities = 55/301 (18%), Positives = 94/301 (31%), Gaps = 40/301 (13%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIA-----GET 141
           ++P   E+ +          S   + C  +   A + W + +QE       A        
Sbjct: 3   VTPPGPELVLN-------VSSTFVLTCSGS---APVVWERMSQEPPQEMAKAQDGTFSSV 52

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV---GDR 198
           L +  +T  D G Y C+  +++G    +   + +   +     +  +A + FI       
Sbjct: 53  LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITE 112

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
             I C     +P    T       G     V    + G          ++  Y C     
Sbjct: 113 ITIPC--RVTDPQLVVTLHE--KKGDVALPVPYDHQRGFSGIF-----EDRSYICKTTIG 163

Query: 259 AGKEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----- 310
             +   +AY       +   V++   + V VR GE +TL C   G  +    W       
Sbjct: 164 DREVDSDAYYVYRLQVSSINVSVNAVQTV-VRQGENITLMCIVIGNEVVNFEWTYPRKES 222

Query: 311 --YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRP 366
              + P    L       R++  I S    D+G Y C    S      EK I + V    
Sbjct: 223 GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282

Query: 367 E 367
            
Sbjct: 283 H 283

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  101 bits (252), Expect = 3e-24
 Identities = 34/273 (12%), Positives = 63/273 (23%), Gaps = 65/273 (23%)

Query: 183 IRIHPNASQTFI-VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-VLRF 240
           + + P   +  + V     + C       S    W R   +               VL  
Sbjct: 1   LVVTPPGPELVLNVSSTFVLTC-----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTL 55

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNA---YIHVL---TLPAVTITPSEYVSVRPGEPLTL 294
            N+   D G+Y C   +S G E       YI V               ++ +     +T+
Sbjct: 56  TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115

Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
            C  T  P   V+  +        +  D                +   Y C         
Sbjct: 116 PCRVTD-PQLVVTLHEKKGDVALPVPYDH-------QRGFSGIFEDRSYICKTTIGDREV 167

Query: 355 EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR 414
           +         +                                                 
Sbjct: 168 DSDAYYVYRLQV--------------------------------------------SSIN 183

Query: 415 ITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
           +++  V+  V+ G+   + C  IG   ++  W 
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT 216

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 59.3 bits (143), Expect = 5e-10
 Identities = 26/188 (13%), Positives = 47/188 (25%), Gaps = 45/188 (23%)

Query: 43  ENHEVTVYEGGDAELKC-------------NTYYAPGRWMWLNFYSFLSLII----ICLA 85
           E   + + E  +  + C                       + +   F  +      IC  
Sbjct: 101 EELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKT 160

Query: 86  ---------------YLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ 129
                           L   +  V V   Q    +G  +T+ C    +     +W+   +
Sbjct: 161 TIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220

Query: 130 EQLPP-----------NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR 178
           E                      L I      D G Y C++  +  +  QD  +I +   
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH-QDEKAINITVV 279

Query: 179 EMPRIRIH 186
           E      H
Sbjct: 280 ESGHHHHH 287

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  153 bits (387), Expect = 8e-43
 Identities = 54/299 (18%), Positives = 92/299 (30%), Gaps = 38/299 (12%)

Query: 98  PRQQSAPEGSQVTIEC----------KSNDPSATIKWSKDNQEQLPPNM-IAGETLIING 146
                A  G   + +C          + ND    + W K  + + P N  +    L I  
Sbjct: 36  TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIAN 95

Query: 147 ITKADEG-VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
            T  D    Y+C++    G+  Q      + K   P   I              D+ C +
Sbjct: 96  YTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK---PPSCIPETYELGTHDKYGIDLYCGI 152

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSAGKEVM 264
              +     TW +  N+ +   D   Y +    L  +N    D G+Y C       +   
Sbjct: 153 LYAKHYNNITWYK--NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210

Query: 265 NAYIHVLTLPAV--------TITPSEYVSVRPGEPLTLECEATGRPMP----TVSWVK-- 310
           +  +    +  V         +     ++V  GEP  + C A    +      + W    
Sbjct: 211 DIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS 270

Query: 311 -YIAPFDRNLERDELTSRAVY----TIASVRESDAGQ-YKCIGKNSAGTEEKVITVAVE 363
            +I   D  +     +S  +        +V E   G  Y C G N    +    TV +E
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 98.7 bits (245), Expect = 5e-23
 Identities = 36/255 (14%), Positives = 70/255 (27%), Gaps = 22/255 (8%)

Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW-----IRP 219
           N  +D    +  K   P        +    +G+    +C          +       +  
Sbjct: 13  NKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNW 72

Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEG-KYTCIAENSAGK-EVMNAYIHVLTLPAVT 277
           +  GK    +    + G L   N  + D   +Y C      G         H+   P+  
Sbjct: 73  EKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI 132

Query: 278 ITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR 336
               E +       + L C     +    ++W K       +  +   + + +  I +  
Sbjct: 133 PETYE-LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNL-IIHNPE 190

Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEY 396
             D+G+Y C         +  I V+        P        IL                
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN----------- 239

Query: 397 VYAVGSNASISCSVE 411
              +G  A+I+C+  
Sbjct: 240 -VTIGEPANITCTAV 253

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 21/199 (10%), Positives = 42/199 (21%), Gaps = 64/199 (32%)

Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM---------PTVSWVKY 311
           ++ + A       P+     +       GEP + +C      +           V+W K 
Sbjct: 16  RDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKI 75

Query: 312 ---IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
                P +R ++  +L                 +Y C      G   + I  +       
Sbjct: 76  GKTRRPLNRRVKNGDLWIANY-----TSNDSHRRYLCTVTTKNGDCVQGIVRSHIR---- 126

Query: 369 GPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGD 428
                                                     +PP               
Sbjct: 127 ------------------------------------------KPPSCIPETYELGTHDKY 144

Query: 429 IANIRCSAI-GATPISIRW 446
             ++ C  +      +I W
Sbjct: 145 GIDLYCGILYAKHYNNITW 163

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 21/120 (17%)

Query: 74  YSFLSLIIICLAYLSPQANEVQVT-PRQQSAPEGSQVTIECK-----SNDPSATIKWSKD 127
              +      L  +  Q +  ++    + +   G    I C             I W   
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269

Query: 128 NQEQLPP-----------NMIAGETLIINGITKADEG-VYICSIQNAQGNVFQDYASIQV 175
           +   +               I   TL    +T+   G  Y C   N   +      +  V
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD---KTLTTTV 326

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  147 bits (372), Expect = 1e-40
 Identities = 55/322 (17%), Positives = 99/322 (30%), Gaps = 54/322 (16%)

Query: 96  VTPRQQSAPEGSQVTIECKSN--------DPSATIKWSKDNQEQLPPN------MIAGET 141
              +++   EG  V + C            P   + W K++  +  P             
Sbjct: 23  RHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA 82

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRAD 200
           L +    + D G Y+C+ +NA      D  SI++   E     +      Q   +     
Sbjct: 83  LWLLPALQEDSGTYVCTTRNASY---CDKMSIELRVFENTDAFLPFISYPQILTLSTSGV 139

Query: 201 IQCVLEA----GEPSPTQTWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGDEGKYTC 253
           + C   +     +      W +  +      D E +  +     L  +++A  D G Y C
Sbjct: 140 LVCPDLSEFTRDKTDVKIQWYK--DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197

Query: 254 IAENSAGKEVMNAYIHV--------LTLPAVTITPSEYVSVRPGEPLTLECEA---TGRP 302
           +   +   +  N    +             V I+P + +S   G  LT+ C+    TG P
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257

Query: 303 MPTVSWVK---------------YIAPFDRNLERDELTSRAVYTIASVRESDAG-QYKCI 346
           + T+ W                    P     E +E           V   D    +KC+
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317

Query: 347 GKNSAGTEEKVITVAVEHRPEY 368
             N+   +    TV   H   +
Sbjct: 318 VHNTLSFQTLRTTVKEHHHHHH 339

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  117 bits (293), Expect = 2e-29
 Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 56/292 (19%)

Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE------AGEPSPTQTWIRPDNDGKFG 226
                    R R      +  + G+   ++C         +  P    TW + D+     
Sbjct: 10  AHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP 69

Query: 227 PDVE--VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY- 283
            + E  ++ + G L        D G Y C   N++  + M+  + V       +    Y 
Sbjct: 70  GEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP 129

Query: 284 VSVRPGEPLTLECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY-TIASVRE 337
             +       L C         +    + W K     D++ E+        +  +  V  
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVAL 189

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYV 397
            DAG Y+C+   +   ++  IT ++E R +                              
Sbjct: 190 EDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK--------------------------- 222

Query: 398 YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGAT---PISIRW 446
                          P I       +   G    I C     T     ++ W
Sbjct: 223 -----------EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW 263

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  143 bits (362), Expect = 6e-40
 Identities = 46/266 (17%), Positives = 79/266 (29%), Gaps = 21/266 (7%)

Query: 94  VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
           + + P   S  +   VT+ C+      S++ +W  +             +  I   +  D
Sbjct: 4   ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----PSYRITSASVND 59

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            G Y C    +  +       IQ++      +      S+ F  G+   ++C     +  
Sbjct: 60  SGEYRCQRGLSGRS-----DPIQLEIHRGWLLLQVS--SRVFTEGEPLALRCHAWKDKLV 112

Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
               + R   +GK     + +     L          G Y C              + V 
Sbjct: 113 YNVLYYR---NGK---AFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166

Query: 272 TLP-AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
            L  A  +  S    +  G  +TL CE           + +         R   TS   Y
Sbjct: 167 ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS-EY 225

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEK 356
            I + R  D+G Y C      G   K
Sbjct: 226 QILTARREDSGLYWCEAATEDGNVLK 251

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  103 bits (257), Expect = 4e-25
 Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 39/261 (14%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             I + P    +    +   + C +     S +  W     +G               R 
Sbjct: 2   AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFL---NGTA-----TQTSTPSYRI 52

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT- 299
            + +  D G+Y C    S   + +   IH      + +  S  V    GEPL L C A  
Sbjct: 53  TSASVNDSGEYRCQRGLSGRSDPIQLEIHR---GWLLLQVSSRV-FTEGEPLALRCHAWK 108

Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359
            + +  V + +                 +  TI     S  G Y C G          I+
Sbjct: 109 DKLVYNVLYYR------NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162

Query: 360 VAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRP 419
           V V+       ++    + +L                    G+  ++SC  +        
Sbjct: 163 VTVKELFPAPVLNASVTSPLL-------------------EGNLVTLSCETKLLLQRPGL 203

Query: 420 VRQTVKPGDIANIRCSAIGAT 440
                       +R     + 
Sbjct: 204 QLYFSFYMGSKTLRGRNTSSE 224

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 61.5 bits (149), Expect = 9e-11
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 61/175 (34%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
             +T+ P  +VSV   E +TL CE    P   +  W           +    TS   Y I
Sbjct: 2   AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLN----GTATQ----TSTPSYRI 52

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
            S   +D+G+Y+C    S  ++                                      
Sbjct: 53  TSASVNDSGEYRCQRGLSGRSD-------------------------------------- 74

Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP-ISIRW 446
                        I   +    + L+   +    G+   +RC A       ++ +
Sbjct: 75  ------------PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQEQLPPNMIAGETLII 144
             A  +  +       EG+ VT+ C++      P   + +S     +            I
Sbjct: 169 FPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQI 227

Query: 145 NGITKADEGVYICSIQNAQGNVFQ--DYASIQV 175
               + D G+Y C      GNV +      +QV
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  142 bits (358), Expect = 1e-38
 Identities = 47/310 (15%), Positives = 83/310 (26%), Gaps = 41/310 (13%)

Query: 94  VQVTPRQQSAPEGSQVTIEC-----KSNDPSATIKWSKDNQEQLPPNMIAGE-------- 140
           V           G+ V + C       +     + W K          I           
Sbjct: 17  VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 76

Query: 141 ----------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
                           T+ ++ +   DEGVYIC          +   ++ V  +    I 
Sbjct: 77  PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE 136

Query: 185 IHP--NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE----VYQELGVL 238
                  ++           C    G+P    +W           ++         +   
Sbjct: 137 GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRY 196

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
           R        +    CI      +   +  ++V   P VTI   +         + L C+A
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA 256

Query: 299 TGRPMPT-VSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
              P  T   W       + +L +  E  +R ++    +  S AG Y C   N  GT   
Sbjct: 257 DANPPATEYHWTT----LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSG 312

Query: 357 VITVAVEHRP 366
            + V +    
Sbjct: 313 QVEVNITEAA 322

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 94.0 bits (233), Expect = 2e-21
 Identities = 50/322 (15%), Positives = 80/322 (24%), Gaps = 84/322 (26%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ---TWIRPDNDGKFGPDVEVYQELGV 237
           P   +  N S    +G    + C      PS      TW +   +G           +GV
Sbjct: 14  PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGV 72

Query: 238 ---------------------LRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPA 275
                                +R + +   DEG Y C               + V+  P 
Sbjct: 73  SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132

Query: 276 VTITPSEYV----SVRPGEPLTLECE-ATGRPMPTVSWVKYIAPFDRNLERDE----LTS 326
             I  ++ V      +  + L   C  A G+P   VSW   +       E       +T 
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
            + Y +   RE+      CI        ++ +T+ V++                      
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY---------------------- 230

Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGA-TPISI 444
                                     P +T+               + C A         
Sbjct: 231 -------------------------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265

Query: 445 RWQPLQGYFPSHVVEYNGELRL 466
            W  L G  P  V   N  L  
Sbjct: 266 HWTTLNGSLPKGVEAQNRTLFF 287

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 93.3 bits (231), Expect = 3e-21
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 18/207 (8%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPNMIAGE----- 140
           +      Q   R +   +   +   C S +  P + + W    + +     I        
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191

Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD 197
                 +    +A +    C +        +   S+ ++ +  P + I       ++   
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMD---RFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248

Query: 198 RADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
              + C  +   P  T+  W          P     Q   +     I     G Y C A 
Sbjct: 249 DVKLTCKAD-ANPPATEYHWTT---LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304

Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEY 283
           N  G       +++    A+      +
Sbjct: 305 NPIGTRSGQVEVNITEAAALEHHHHHH 331

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  141 bits (356), Expect = 1e-38
 Identities = 40/305 (13%), Positives = 79/305 (25%), Gaps = 42/305 (13%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
                      +  EC    P +   WSKD       +    +  +     +    +   
Sbjct: 10  VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVS-TEDSPRLEVESKGNKTKMTFKDLGMD 68

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREM--------PRIRIHPNASQTFIVGDRADIQ 202
           D G+Y C + +  G         +  KR +        P + +    +   +   +    
Sbjct: 69  DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFW 128

Query: 203 CVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
              E    +    +      I      K   D      +  +    +   DEG YT   +
Sbjct: 129 MQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG--IIEMFMEKLQDEDEGTYTFQLQ 186

Query: 257 NSAGKEVMNAYIHVLTLPAV-----------------TITPSEYVSVRPGEPLTLECEAT 299
           +          +       +                          V     + L+C+  
Sbjct: 187 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA 246

Query: 300 GRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358
                T + W K       + + D         I    + DAG Y+ I K+  G ++  +
Sbjct: 247 NIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306

Query: 359 TVAVE 363
            +  E
Sbjct: 307 KLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 93.5 bits (232), Expect = 2e-21
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 50/270 (18%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTC 253
               + +C  +   P    +W +     +  P +EV  +     + F ++   D G Y+C
Sbjct: 18  VISLNFEC--DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC 75

Query: 254 IAENSAGK-----------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGR 301
              ++ G            + + A  H    P V +     V +     +    +A    
Sbjct: 76  DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLS 135

Query: 302 PMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV 357
               V+++     I    +  +  D  T      +  +++ D G Y    ++   T    
Sbjct: 136 GNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST 195

Query: 358 ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITL 417
           + +  +   +            L    E+ R E                    + P   +
Sbjct: 196 VVLVGDVFKK------------LQKEAEFQRQEWIRK----------------QGPHF-V 226

Query: 418 RPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
             +   V       ++C          I W
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVW 256

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 58.8 bits (142), Expect = 9e-10
 Identities = 21/151 (13%), Positives = 35/151 (23%), Gaps = 18/151 (11%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAV 329
           +   T      V       L  EC+    P    SW K           LE +   ++  
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED-SPRLEVESKGNKTK 59

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
            T   +   D G Y C   ++ G     +    E          +    +  +      P
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEE---------LKRLLALSHEHKFPTVP 110

Query: 390 EPEEGEYVYAVGSNASISCSVE----PPRIT 416
              E                 E      ++ 
Sbjct: 111 VKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGE-TLIINGIT 148
           V            V ++CK  +      I W KD +E +  +       G  TL+I   +
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKDGICTLLITEFS 284

Query: 149 KADEGVYICSIQNAQGNV 166
           K D G+Y   +++ +G  
Sbjct: 285 KKDAGIYEVILKDDRGKD 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  137 bits (346), Expect = 3e-37
 Identities = 53/309 (17%), Positives = 89/309 (28%), Gaps = 46/309 (14%)

Query: 93  EVQVT-PRQQSAPEGSQVTIECKSNDPS------ATIKWSKDNQEQ-------------- 131
           +V V  P Q     G  VT+ C    P+      + + W++  +                
Sbjct: 1   DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60

Query: 132 ----------LPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
                          +   +L + G+   DEG Y C               ++V     P
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV--LAKP 118

Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQELG 236
           +                   +CV   G P    TW       P+     G          
Sbjct: 119 QNTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKE--VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
           +      +  D    TC  E+ + ++  ++   + V   P V+I+  +          TL
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237

Query: 295 ECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
            C+A   P PT  +W          L    +   A   I  V +       C   N+ G 
Sbjct: 238 TCDARSNPEPTGYNWST----TMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGA 293

Query: 354 EEKVITVAV 362
            +  +TV V
Sbjct: 294 RQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  104 bits (261), Expect = 2e-25
 Identities = 51/319 (15%), Positives = 90/319 (28%), Gaps = 79/319 (24%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDG-------KFGPDVEV 231
           + +         +GD   + C L+      T     TW R    G         GP    
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 232 YQEL-------------GVLRFNNIATGDEGKYTCIAENS-AGKEVMNAYIHVLTLPAVT 277
            + L               LR   +   DEG YTC+      G   ++ ++ VL  P  T
Sbjct: 62  SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT 121

Query: 278 ITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD-----RNLERDELTSRAVYT 331
               + V +         C +T GRP   ++W   +                +T  +++ 
Sbjct: 122 AEVQK-VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
           +    + D     C  ++ +  + +++TV +                             
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------------------------- 212

Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPV-RQTVKPGDIANIRCSAIGA-TPISIRWQPL 449
                VY             PP +++           + A + C A     P    W   
Sbjct: 213 -----VYY------------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255

Query: 450 QGYFPSHVVEYNGELRLGP 468
            G  P   V    +L + P
Sbjct: 256 MGPLPPFAVAQGAQLLIRP 274

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  137 bits (346), Expect = 4e-37
 Identities = 51/302 (16%), Positives = 81/302 (26%), Gaps = 40/302 (13%)

Query: 97  TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
                 +         C    N+   TI W KD+ +               E L      
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA-SQTFIVGDRADIQCVLE- 206
             D G Y C ++N+   + +   S +  + E            Q   V     + C    
Sbjct: 71  VEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129

Query: 207 ----AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
                    P   W   D       ++        L   N+A    G YTC A  +   +
Sbjct: 130 FFKNENNELPKLQW-YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188

Query: 263 VMNAYIHVL---------TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--- 310
                  +          T P +    +E + V  G  + L C  TG+      W     
Sbjct: 189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGS 248

Query: 311 YIAPFDRNLERDELTSR-----------AVYTIASVRESD-AGQYKCIGKNSAGTEEKVI 358
            I   D  L  D  +              V  I+ +        + C  KN+ G +   I
Sbjct: 249 VIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308

Query: 359 TV 360
            +
Sbjct: 309 QL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  112 bits (280), Expect = 7e-28
 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 33/253 (13%)

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--KFGPDVEVYQEL 235
           RE   I +           +     C L   E   T TW + D+           ++Q  
Sbjct: 9   REEKIILVSS-------ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPL 292
             L F      D G Y C+  NS+    +      +         ++ +    +      
Sbjct: 62  EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDG 121

Query: 293 TLEC------EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCI 346
            L C      +     +P + W K   P   +          +  + +V E   G Y C 
Sbjct: 122 GLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI-VMNVAEKHRGNYTCH 180

Query: 347 GKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASI 406
              +   ++  IT  +E          RP   I+          P        +GS   +
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRP--VIV---------SPANETMEVDLGSQIQL 229

Query: 407 SCSVE---PPRIT 416
            C+V         
Sbjct: 230 ICNVTGQLSDIAY 242

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 89.4 bits (221), Expect = 6e-20
 Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 32/214 (14%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK-------SNDPSATIKWSKDNQEQLPPN---MI 137
            P          +Q  P      + C         N+    ++W KD +  L  N     
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159

Query: 138 AGETLIINGITKADEGVYICSIQNAQGNV-FQDYASIQV-----DKREMPRIRIHPNASQ 191
             + LI+  + +   G Y C          +     I+      +K   P I    N + 
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219

Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQE---------LGV 237
              +G +  + C +  G+ S    W        ++D   G D    +          + V
Sbjct: 220 EVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278

Query: 238 LRFNNIATGD-EGKYTCIAENSAGKEVMNAYIHV 270
           L  + I +   +  +TC A+N+ G +     +  
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 20/200 (10%), Positives = 42/200 (21%), Gaps = 57/200 (28%)

Query: 280 PSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDE--LTSRAVYTIASVR 336
               +     E     C         T++W K  +    + E+       +        +
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEY 396
             D+G Y C+ +NS+      I+            + +                      
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA--------------------- 109

Query: 397 VYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCS------AIGATPISIRW---- 446
                                   +Q +       + C               ++W    
Sbjct: 110 ----------------------IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC 147

Query: 447 QPLQGYFPSHVVEYNGELRL 466
           +PL      H       L +
Sbjct: 148 KPLLLD-NIHFSGVKDRLIV 166

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  131 bits (332), Expect = 2e-36
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD------NDGKFGPDVEVYQE 234
            ++ I P+      VG+     C +         +W  P+      N  +    V    +
Sbjct: 3   LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV-VWNDDD 60

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
              L   N    D G Y C+     G +      + +         P+     + GE   
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAV 119

Query: 294 LECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           + C+      PT+ W      +        R  + S     I  ++++D G Y+C G+  
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDV--RFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 351 AGTEEKVITVAVE 363
           A  E     + V 
Sbjct: 178 ARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  128 bits (322), Expect = 6e-35
 Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---------MIAGET 141
           +V + P Q     G      C+   +     I W   N E+L PN              T
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           L I      D G+Y C +    G   +   ++++   +    +  P   Q F  G+ A I
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI--FQKLMFKNAP-TPQEFKEGEDAVI 120

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
            C +      PT  W     D     DV         L+   I   DEG Y C     A 
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 261 KEVMNAYIHVL 271
            E+    I V+
Sbjct: 180 GEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.1 bits (208), Expect = 5e-19
 Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 55/181 (30%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKY----IAPFD-RNLERDELTS 326
           +  V I PS+   +  GE     C+  G      +SW       ++P   R         
Sbjct: 2   VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            +  TI +    DAG YKC+     GT+ E  + V +                       
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                    +       P  Q  K G+ A I C  + + P +I 
Sbjct: 98  ------------------------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133

Query: 446 W 446
           W
Sbjct: 134 W 134

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  132 bits (334), Expect = 1e-35
 Identities = 44/292 (15%), Positives = 86/292 (29%), Gaps = 36/292 (12%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIING 146
           + P  +E+ V         G  +++ C        ++W+                 I   
Sbjct: 15  IHPAQSELIVEA-------GDTLSLTCIDP---DFVRWTFKTYFNEMVENKKN-EWIQEK 63

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE 206
                 G Y CS  N         +SI V  R+  ++ +             A ++C L 
Sbjct: 64  AEATRTGTYTCSNSNGLT------SSIYVFVRDPAKLFLVGL-PLFGKEDSDALVRCPL- 115

Query: 207 AGEPSPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
                   + I  D              + G+   N           C A+        +
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSD 175

Query: 266 AY-IHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK--------- 310
            + + V       P V++  + ++ ++ G+  T+ C            W+K         
Sbjct: 176 KFTLKVREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234

Query: 311 YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
            +     +        +   TI+S R  D+G + C   N+ G+     T+ V
Sbjct: 235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  109 bits (272), Expect = 6e-27
 Identities = 36/268 (13%), Positives = 79/268 (29%), Gaps = 43/268 (16%)

Query: 46  EVTVYEGGDAELKCN-----TYYAPGRWMWLNFYSFLSLII-----------ICLA---- 85
           E+ V  G    L C       +     +  +        I             C      
Sbjct: 21  ELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80

Query: 86  ----YLS-PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--- 136
               Y+      ++ +        E S   + C  ++   +     + + + LP ++   
Sbjct: 81  TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFV 140

Query: 137 --IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQT 192
                   I N           C+ Q     +  D  +++V +  + +P + +    S  
Sbjct: 141 PNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPE-TSHL 199

Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV---------YQELGVLRFNNI 243
              GD   + C ++    S    W++ +   +    V+          Y+    L  ++ 
Sbjct: 200 LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA 259

Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVL 271
              D G + C A N+ G   +   + V+
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  102 bits (255), Expect = 1e-24
 Identities = 32/269 (11%), Positives = 59/269 (21%), Gaps = 61/269 (22%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P I    +       GD   + C            W           +  V  +      
Sbjct: 13  PSIHPAQS-ELIVEAGDTLSLTC-----IDPDFVRWTFKTY-----FNEMVENKKNEWIQ 61

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
                   G YTC   N     +   Y+ V     + +        +      + C  T 
Sbjct: 62  EKAEATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFLVGLPLF-GKEDSDALVRCPLTD 117

Query: 301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV-RESDAGQYKCIGKNSAGTEE-KVI 358
             +   S ++                +A  TI +V R       +C  +           
Sbjct: 118 PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKF 177

Query: 359 TVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR 418
           T+ V    +                                             P +++ 
Sbjct: 178 TLKVREAIKA-------------------------------------------IPVVSVP 194

Query: 419 PVRQTVKPGDIANIRCSAIGA-TPISIRW 446
                +K GD   + C+     T ++  W
Sbjct: 195 ETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 23/176 (13%), Positives = 39/176 (22%), Gaps = 60/176 (34%)

Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
            + P++    SE + V  G+ L+L C         V W      F           +  +
Sbjct: 10  PSPPSIHPAQSELI-VEAGDTLSLTCIDPD----FVRWT-----FKTYFNEMVENKKNEW 59

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
                  +  G Y C   N   +   V                                 
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLTSSIYV--------------------------------- 86

Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                +V             +P ++ L  +    K    A +RC            
Sbjct: 87  -----FVR------------DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL 125

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  125 bits (315), Expect = 7e-34
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK----FGPDVEVYQE 234
           + P I      +   +V + A   C +E   P P  +W R   +      F     + + 
Sbjct: 6   KAPVITTPLE-TVDALVEEVATFMCAVE-SYPQPEISWTR---NKILIKLFDTRYSIREN 60

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLT 293
             +L   ++   D+G Y C A N  G  V +   + V   P +T  P   V +  G    
Sbjct: 61  GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPIN-VKIIEGLKAV 119

Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
           L C   G P P+VSW+K  +    N  R  +       I +V++ DAGQY+C+ KNS GT
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALREN-SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178

Query: 354 EE-KVITVAVE 363
              K++ + VE
Sbjct: 179 AYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  115 bits (291), Expect = 1e-30
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 14/192 (7%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETL 142
           P+A  +        A      T  C     P   I W+++       +        G+ L
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64

Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
            I  +  +D+G+Y C+  N  G   +   ++QV  +  P+I   P  +   I G +A + 
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQV--KMKPKITRPPI-NVKIIEGLKAVLP 121

Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK- 261
           C    G P P+ +WI+ D+  +    + V +  G LR +N+   D G+Y C+A+NS G  
Sbjct: 122 CTTM-GNPKPSVSWIKGDSALRENSRIAVLES-GSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 262 --EVMNAYIHVL 271
             +++   + V 
Sbjct: 180 YSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 83.6 bits (207), Expect = 7e-19
 Identities = 42/200 (21%), Positives = 61/200 (30%), Gaps = 57/200 (28%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P +T      V     E  T  C     P P +SW +    I  FD         +  + 
Sbjct: 8   PVITTPLET-VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI--RENGQLL 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
           TI SV +SD G Y C   N  G                                      
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGG------------------------------------- 87

Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW---- 446
                   AV S  ++   +  P+IT  P+   +  G  A + C+ +G    S+ W    
Sbjct: 88  --------AVESCGALQVKM-KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138

Query: 447 QPLQGYFPSHVVEYNGELRL 466
             L+       V  +G LR+
Sbjct: 139 SALREN-SRIAVLESGSLRI 157

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)

Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNG 462
           + P IT           ++A   C+        I W      ++ +   + +  NG
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  129 bits (326), Expect = 2e-33
 Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 17/200 (8%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---------VEV 231
           P I    N  +T     +  + C  E GEP P  TW R  +   F            V+ 
Sbjct: 2   PHIIQLKN--ETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58

Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
                 L   ++   D G+Y C A +  G    + Y+ +   P              G P
Sbjct: 59  QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ-TIYYSWEGNP 117

Query: 292 LTLECEATGRPMPTVSWVKYIAPFD----RNLERDELTSRAVYTIASVRESDAGQYKCIG 347
           + + C+    P  ++ W +           NL+      + +  IA   ++D G+Y C  
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 348 KNSAGTEEKVITVAVEHRPE 367
            N  GT  +   +A+   P 
Sbjct: 178 TNHIGTRFQEYILALADVPS 197

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  112 bits (281), Expect = 2e-27
 Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 57/294 (19%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-------------T 141
           +  + ++  E  QVT+ C    +P   I W +                           +
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           L I  +  +D G Y C   +  G       S+ +D    P+   +         G+  +I
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGH---QKSMYLDIEYAPKFISNQT-IYYSWEGNPINI 120

Query: 202 QCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
            C ++   P  +  W      +   N               +L     +  D G+Y C A
Sbjct: 121 SCDVK-SNPPASIHWRRDKLVLPAKNTTNL--KTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 256 ENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV------ 309
            N  G       + +                 P  P  ++     +    VS+       
Sbjct: 178 TNHIGTRFQEYILALAD--------------VPSSPYGVKIIELSQTTAKVSFNKPDSHG 223

Query: 310 -----KYIAPFDRNLERDELTSRAV-----YTIASVRESDAGQYKCIGKNSAGT 353
                 Y               R+        + ++  +   + +    N  G 
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 87.6 bits (217), Expect = 6e-19
 Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 56/179 (31%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY------ 330
            I   +  +      +TL C+A G P+P ++W + +  F        L  R         
Sbjct: 3   HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62

Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
               I  V+ SD+G+Y C   +  G  +K + + +E                        
Sbjct: 63  SSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------------ 98

Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                                    P+            G+  NI C      P SI W
Sbjct: 99  -----------------------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHW 134

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 63/251 (25%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---------TLIIN 145
                  + EG+ + I C   ++P A+I W +D    LP                 L I 
Sbjct: 105 SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLV-LPAKNTTNLKTYSTGRKMILEIA 163

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
             +  D G Y C+  N  G     +    +       +   P++     + + +     +
Sbjct: 164 PTSDNDFGRYNCTATNHIGT---RFQEYIL------ALADVPSSPYGVKIIELSQTTAKV 214

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVY----QELGVLRFNNIAT--------------GD 247
                    ++ +PD+ G  G  +  Y    +E+    +  + +                
Sbjct: 215 ---------SFNKPDSHG--GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNT 263

Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
             +    A N  G+   +      TLP    +P   +  +P    +            +S
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF----------KLS 312

Query: 308 WVKYIAPFDRN 318
             K     D  
Sbjct: 313 ITK---QDDGG 320

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  122 bits (308), Expect = 4e-33
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELG 236
            ++   P    T   G    + C +E G   P   W++      N  +    V     +G
Sbjct: 3   LKLMGAPV-KLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
            L   ++   D G+Y C  E+    E+    ++ V  +P  T+ P + ++V P  P  L 
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQLS 119

Query: 296 CEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
           CEA G P P T+ W +          +    + +   +     + +  + C   N  G  
Sbjct: 120 CEAVGPPEPVTIVWWR-------GTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLA 172

Query: 355 E-KVITVAVE 363
             +  TV ++
Sbjct: 173 SSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  102 bits (255), Expect = 1e-25
 Identities = 31/186 (16%), Positives = 51/186 (27%), Gaps = 22/186 (11%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
             P + +  +G  V + C         I+W KD                      L +  
Sbjct: 7   GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 66

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE 206
           + ++D G Y C +++           + V    +P   + P             + C   
Sbjct: 67  VERSDAGRYWCQVEDGGETEISQPVWLTV--EGVPFFTVEPK-DLAVPPNAPFQLSCEAV 123

Query: 207 AGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVM 264
            G P P    W R     K G              N         ++C A N  G     
Sbjct: 124 -GPPEPVTIVWWR--GTTKIGGPAP-----SPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

Query: 265 NAYIHV 270
            A +H+
Sbjct: 176 TATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 54/180 (30%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
             +   P + ++V  G+P+ L C   G   P + WVK    +   D+  +   E      
Sbjct: 3   LKLMGAPVK-LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
            ++ SV  SDAG+Y C  ++   TE  + + + VE                         
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------------------------- 96

Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRWQ 447
                                   P  T+ P    V P     + C A+G   P++I W 
Sbjct: 97  ----------------------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW 134

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPL----QGYFPSHVVEYNGE 463
             ++   PV+ TV  G    + CS  G     I+W      +    Q Y P     + G 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 464 LRL 466
           L L
Sbjct: 62  LSL 64

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  122 bits (307), Expect = 1e-32
 Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 11/195 (5%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LG 236
           E P IR       T  +G+ A + C +  G P P   W R   +       ++  +    
Sbjct: 6   EAPGIRKEMK-DVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT--ITPSEYVSVRPGEPLTL 294
            L        DEG YTCIA N  G+   ++ + +   P         E      G  L L
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRL 123

Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSR---AVYTIASV-RESDAGQYKCIGKNS 350
                GRP+P ++W         + E   + +        + +V R++ AG+YK    N 
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNS-ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 351 AGTEEKVITVAVEHR 365
            GT + ++ V ++ +
Sbjct: 183 FGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 97.8 bits (244), Expect = 6e-24
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 18/187 (9%)

Query: 97  TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGIT 148
             +  +   G    + C+    P   IKW +  +E L  +    ++ +    TL +    
Sbjct: 13  EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKE-LIQSRKYKMSSDGRTHTLTVMTEE 71

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA--SQTFIVGDRADIQCVLE 206
           + DEGVY C   N  G V     S ++  +  P+              VG    +  +  
Sbjct: 72  QEDEGVYTCIATNEVGEV---ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY- 127

Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIAT-GDEGKYTCIAENSAGKEV 263
            G P P  TW       +   ++ +        L   N+      GKY     N  G   
Sbjct: 128 IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187

Query: 264 MNAYIHV 270
               + +
Sbjct: 188 AILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 24/148 (16%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYT 331
           P +     + V+ + GE   L C+  GRP+P + W ++       R  +          T
Sbjct: 8   PGIRKEMKD-VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
           + +  + D G Y CI  N  G  E    + ++  P      P                 P
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP---QFHPGY---------------P 108

Query: 392 EEGEYVYAVGSNASISCSVE---PPRIT 416
            + +Y  AVGS   +         P +T
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMT 136

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGET- 141
           +PQ +       +     GS + +       P   + W    +  L  +    +   E  
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL-LQNSENITIENTEHY 158

Query: 142 ---LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR 178
              ++ N   K   G Y   + N  G V      +++  +
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQDK 197

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  122 bits (308), Expect = 1e-32
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 34/220 (15%)

Query: 164 GNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG 223
           G+    +           +I ++P  S+  + G    + C    G P     W + + + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPE-SKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEI 59

Query: 224 KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPA------- 275
             G           L FN +   D G Y C   N+   E    + + V  +P        
Sbjct: 60  PNGNT-------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112

Query: 276 --------VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR 327
                   + + P+    + PG  L L+C A G P+P   W K       N       ++
Sbjct: 113 GVSESKLQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFK-------NELPLTHETK 164

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRP 366
            +Y +  V     G Y C   N   +++ K + + ++   
Sbjct: 165 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  112 bits (282), Expect = 5e-29
 Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
           P+ +++ V P  ++   G  V + C++   P    +W K N+E +P        LI N +
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE-IPNG--NTSELIFNAV 72

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQV-------------DKREMPRIRIHPNASQTFI 194
              D G Y+C + N     F  ++ + V                   +I + P  SQ  +
Sbjct: 73  HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP-TSQKLM 131

Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
            G    +QCV   G P P   W +  N+     + +      +     +    +G Y C 
Sbjct: 132 PGSTLVLQCVAV-GSPIPHYQWFK--NELPLTHETK-----KLYMVPYVDLEHQGTYWCH 183

Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPS 281
             N    +       ++        P 
Sbjct: 184 VYNDRDSQDSKKVEIIIDELNNLGHPD 210

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 93.8 bits (233), Expect = 3e-22
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 45/199 (22%)

Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
           S+     ++   V     +T+ P    +V  G+ + L C ATG P     W K       
Sbjct: 3   SSHHHHHHSSGLVPRGSKITVNPES-KAVLAGQFVKLCCRATGHPFVQYQWFK------- 54

Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPG 376
             +     + +     +V   DAG Y C   N+   E  +   + V   PE    S    
Sbjct: 55  MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114

Query: 377 ADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSA 436
           ++                                   +I + P  Q + PG    ++C A
Sbjct: 115 SE--------------------------------SKLQICVEPTSQKLMPGSTLVLQCVA 142

Query: 437 IGATPISIRW----QPLQG 451
           +G+     +W     PL  
Sbjct: 143 VGSPIPHYQWFKNELPLTH 161

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 71  LNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ 129
           L+           +  +S    ++ V P  Q    GS + ++C +   P    +W K+  
Sbjct: 98  LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157

Query: 130 EQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
             L       +  ++  +    +G Y C + N + +       I +D  E+  +    N 
Sbjct: 158 P-LTHE--TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID--ELNNLGHPDNK 212

Query: 190 SQT 192
            QT
Sbjct: 213 EQT 215

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  121 bits (305), Expect = 2e-32
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 12/190 (6%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVL 238
           M   R   +  Q F  G+ A++ C +    P+P  +W+  + +     D          L
Sbjct: 2   MLTFREVVS-PQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT---PSEYVSVRPGEPLTLE 295
           +  NI   DEG Y C     A  E+    I V+      I+    S   +   GE +T  
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 296 CEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           C A+G P P +SW +    I   ++ + +   T     T+ ++  SD G Y C   N AG
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNKAG 176

Query: 353 TEEKVITVAV 362
            +EK   + V
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  117 bits (295), Expect = 4e-31
 Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 9/183 (4%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITK 149
                Q   +G    + C+ +  P+  + W   N+E    +     M+A   L I  I K
Sbjct: 7   EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK 66

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLEAG 208
           +DEG+Y C  +        D+  I V     P I +     + T   G+     C    G
Sbjct: 67  SDEGIYRCEGRVEARGEI-DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-G 124

Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
            P P  +W R     +      +      L   NI   D G Y C A N AG++   A++
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

Query: 269 HVL 271
            V 
Sbjct: 185 QVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 57/203 (28%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRA 328
           ++       S     + GE   + C  +  P P VSW+     +     N  R  + +  
Sbjct: 1   SMLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN--RFAMLANN 57

Query: 329 VYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
              I ++ +SD G Y+C G+  A  E   + I V V   P                    
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA------------------- 98

Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                                       +  +    T + G+     C A G+   +I W
Sbjct: 99  --------------------------ISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 132

Query: 447 ----QPLQGYFPSHVVEYNGELR 465
               + ++      +   N EL 
Sbjct: 133 FRNGKLIEENEKYILKGSNTELT 155

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  121 bits (306), Expect = 2e-32
 Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 24/205 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--------DGKFGPDVEVY 232
             +     +       +   + C    G  SP   W             + +        
Sbjct: 2   GSVYTAQ-SDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59

Query: 233 QEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVRPG 289
                  + F+++   D G+YTC+     G+      IH+  L P    T S   SV  G
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119

Query: 290 EPLTLEC-EATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY-------TIASVRES 338
               L C E  G P    SW K    +   D    R  + S               V   
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 339 DAGQYKCIGKNSAGTEEKVITVAVE 363
           D+G+Y C  +N  GT  +     ++
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  121 bits (304), Expect = 4e-32
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 94  VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--------------IA 138
           V         PE   + + C  S   S  ++W                           +
Sbjct: 4   VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
              +  + +T+ D G Y C +    G  + +  SI +     P          +  +G+R
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGE-VSIHLTVLVPPSKPTISV-PSSVTIGNR 121

Query: 199 ADIQCVLEAGEPSPTQTWIRPDND----------GKFGPDVEVYQELGVLRFNNIATGDE 248
           A + C    G P    +W +                      +  + G L F+ +   D 
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLP 274
           G+Y C A+N  G  + +   H+  + 
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 78.5 bits (193), Expect = 5e-17
 Identities = 32/184 (17%), Positives = 49/184 (26%), Gaps = 57/184 (30%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
            +V    S+ V V   E + L C  +G   P V W              +        R 
Sbjct: 2   GSVYTAQSD-VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 329 VY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDG 383
            +     T +SV   D G+Y C+     G     +++ +                     
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT-------------------- 100

Query: 384 DEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAI-GATPI 442
                        V              PP      V  +V  G+ A + CS   G+ P 
Sbjct: 101 -------------VLV------------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS 135

Query: 443 SIRW 446
              W
Sbjct: 136 EYSW 139

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPNMIAGE---------- 140
                    S   G++  + C  +   P +   W KD    L  +               
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165

Query: 141 ----TLIINGITKADEGVYICSIQNAQGNV 166
                LI + +T  D G Y C  QN  G  
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  121 bits (304), Expect = 4e-32
 Identities = 39/206 (18%), Positives = 61/206 (29%), Gaps = 23/206 (11%)

Query: 180 MPRIRIH-PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND--------GKFGPDVE 230
           M  + +H           +   + C    G  SP   W     D         K     E
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 231 VYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVR 287
                    + F ++   D G YTC+     G       + ++ L P    T +   S  
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 288 PGEPLTLECEAT-GRPMPTVSWVK---YIAPFDRNLERDELTSRAVY------TIASVRE 337
            G    L C    G P    +W K    +    ++      +S  +           +  
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVE 363
           SD G+Y C  +N  GT      V +E
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  119 bits (299), Expect = 1e-31
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 26/201 (12%)

Query: 94  VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--------------IA 138
           V  +  +   PE + V + C  S   S  ++W  D  +                      
Sbjct: 7   VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
              +    +T+ D G Y C +    GN + +   +++     P          +  +G+R
Sbjct: 67  PTGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKLIVLVPPSKPTVNI-PSSATIGNR 124

Query: 199 ADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVY---QELGVLRFNNIATGDEG 249
           A + C  + G P    TW      +  +           Y      G L F+ ++  D G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184

Query: 250 KYTCIAENSAGKEVMNAYIHV 270
           +Y+C A N  G  + +  + +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 81.5 bits (201), Expect = 6e-18
 Identities = 31/187 (16%), Positives = 47/187 (25%), Gaps = 57/187 (30%)

Query: 273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVK----------YIAPFDRNLER 321
           + +VT+  SE  V +    P+ L C  +G   P V W            Y      + E 
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
                    T  SV   D G Y C+     G     + V +                   
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI------------------ 103

Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
                                       + PP      +  +   G+ A + CS    +P
Sbjct: 104 ---------------------------VLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136

Query: 442 -ISIRWQ 447
                W 
Sbjct: 137 PSEYTWF 143

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 20/99 (20%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPN--------------M 136
                    SA  G++  + C      P +   W KD    +P N               
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI-VMPTNPKSTRAFSNSSYVLN 167

Query: 137 IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
                L+ + ++ +D G Y C  +N  G       S  V
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYGT---PMTSNAV 203

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  119 bits (299), Expect = 1e-31
 Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 15/191 (7%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
           PRI                 +QC L +         W +   +G               R
Sbjct: 4   PRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTK---NGVELTATRKNASNMEYR 59

Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT 299
            N     D G+Y C+  +       NA I V   P +T       +   G+   + C++ 
Sbjct: 60  INKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRS-ENKNEGQDAMMYCKSV 117

Query: 300 GRPMPTVSWVK---YIAPFDRNLE-RDELTSRAVYT---IASVR-ESDAGQYKCIGKNSA 351
           G P P   W K    +     N   R  + ++  YT   I +++   D G+Y+C   NS 
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177

Query: 352 GTEEKVITVAV 362
           G+      + V
Sbjct: 178 GSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  104 bits (260), Expect = 3e-26
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 20/190 (10%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN---DPSATIKWSKDNQEQLPPN--MIAGETLIINGIT 148
           +  +           VT++C             W+K+  E L       +     IN   
Sbjct: 6   IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE-LTATRKNASNMEYRINKPR 64

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
             D G Y C             A+  ++ +  P I  H   S+    G  A + C    G
Sbjct: 65  AEDSGEYHCVYHFVSA----PKANATIEVKAAPDITGHK-RSENKNEGQDAMMYCKSV-G 118

Query: 209 EPSPTQTWIR-----PDNDGKFGPDVEVYQE--LGVLRFNNIA-TGDEGKYTCIAENSAG 260
            P P   W +      +          +  +     L   N+  T D G+Y C A NS G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 261 KEVMNAYIHV 270
              ++  + V
Sbjct: 179 SASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 26/176 (14%), Positives = 44/176 (25%), Gaps = 54/176 (30%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFDRNLERDELTSRAVYT 331
           P +  +  E +      P+TL+C  T          W K         +         Y 
Sbjct: 4   PRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME---YR 59

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
           I   R  D+G+Y C+  +     +   T+ V+                            
Sbjct: 60  INKPRAEDSGEYHCV-YHFVSAPKANATIEVK---------------------------- 90

Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
                                P IT     +    G  A + C ++G       W+
Sbjct: 91  -------------------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWR 127

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 28/168 (16%), Positives = 43/168 (25%), Gaps = 48/168 (28%)

Query: 47  VTVYEGGDAELKCNTYYAPG---RWMWL----------NFYSFLSLII-----------I 82
           +         L+CN   +        W              S +   I            
Sbjct: 13  IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYH 72

Query: 83  CLAYLSPQAN-----EVQVTP------RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE 130
           C+ +           EV+  P      R ++  EG    + CKS   P     W K    
Sbjct: 73  CVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132

Query: 131 QLPPNMIA------------GETLIINGITKADEGVYICSIQNAQGNV 166
                  +             E  I+N     D G Y C+  N+ G+ 
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA 180

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  119 bits (300), Expect = 1e-31
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 17/196 (8%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ------E 234
           P  +     +        A + C +  G P P   W R     +   D   Y+       
Sbjct: 5   PHFKEELR-NLNVRYQSNATLVCKVT-GHPKPIVKWYR--QGKEIIADGLKYRIQEFKGG 60

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT----ITPSEYVSVRPGE 290
              L   ++   D   Y   A N  G     A + V     +     +     V    GE
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 291 PLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
            ++++   +G+P P ++W K    I            +  ++     V   DAG Y    
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 348 KNSAGTEEKVITVAVE 363
           KN  G ++K + + V 
Sbjct: 181 KNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 99.0 bits (247), Expect = 3e-24
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 18/189 (9%)

Query: 97  TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI--------AGETLIINGI 147
             R  +    S  T+ CK    P   +KW +  +E +   +             LII  +
Sbjct: 10  ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCV 204
           T  D  VY     N  G+V    AS++V+   K  +P+       +   + G+   I+  
Sbjct: 70  TDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGM-GAVHALRGEVVSIKIP 127

Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGK 261
              G+P P  TW +  +        +V        ++  N +   D G Y   A+N  G 
Sbjct: 128 FS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186

Query: 262 EVMNAYIHV 270
           +     + V
Sbjct: 187 DQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 79.0 bits (195), Expect = 3e-17
 Identities = 33/182 (18%), Positives = 51/182 (28%), Gaps = 55/182 (30%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
           P         ++VR     TL C+ TG P P V W +      + +  D L  R      
Sbjct: 5   PHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYR----QGKEIIADGLKYRIQEFKG 59

Query: 331 -----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
                 IASV + DA  Y+    N  G+     ++ VE   +                  
Sbjct: 60  GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK------------------ 101

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                   +  P+            G++ +I+    G     I 
Sbjct: 102 ------------------------IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT 137

Query: 446 WQ 447
           WQ
Sbjct: 138 WQ 139

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 81  IICLAYLSPQANEVQVTPRQ------QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP 133
           +   A L  +       P+         A  G  V+I+   S  P   I W K   + + 
Sbjct: 88  VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ-DLID 146

Query: 134 PN----MIAGET----LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
            N    +I   +    +  NG+ + D G Y+   +N  G   Q    + V
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDV 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  119 bits (299), Expect = 2e-31
 Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 18/205 (8%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQEL 235
             PR    P   QT + G  A   C    G+P P   W +     ++ +F          
Sbjct: 5   TPPRFTRTPV-DQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 236 GVLRFNNIATG-DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS------EYVSVRP 288
            VLR   + T  DE  Y C+A N+ G+  ++  + VL    +           +   V  
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 289 GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYT--IASVRESDAGQY 343
               T+ C A+G P P ++W K    +   + N    +L S ++    I    ESD G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182

Query: 344 KCIGKNSAGTEE-KVITVAVEHRPE 367
           +C+  NSAGT       + V     
Sbjct: 183 ECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  102 bits (255), Expect = 2e-25
 Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 25/200 (12%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
            TP  Q+   G   +  C++  DP   I W+K  ++            +       I   
Sbjct: 11  RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPL 70

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRADI 201
            T  DE +Y C   N  G +      + V       R  P I + P   +       A +
Sbjct: 71  RTPRDEAIYECVASNNVGEISVS-TRLTVLREDQIPRGFPTIDMGP-QLKVVERTRTATM 128

Query: 202 QCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
            C    G P P  TW      +   N+      +   + +G L+       D+GKY C+A
Sbjct: 129 LCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRS-ESIGALQIEQSEESDQGKYECVA 186

Query: 256 ENSAGKEV-MNAYIHVLTLP 274
            NSAG      A ++V    
Sbjct: 187 TNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 45/182 (24%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
             T P  T TP +  +   G   +  C+ATG P P + W K    ++     +   +  S
Sbjct: 3   GETPPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 327 RAVYTIASVR-ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            +V  I  +R   D   Y+C+  N+ G       + V    +                  
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR--------------- 106

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                      P I + P  + V+    A + C+A G     I 
Sbjct: 107 -------------------------GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141

Query: 446 WQ 447
           W 
Sbjct: 142 WF 143

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 78  SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM 136
            L ++    +      + + P+ +        T+ C  S +P   I W KD    +  + 
Sbjct: 95  RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDTSN 153

Query: 137 IAGE----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
             G            L I    ++D+G Y C   N+ G  +   A++ V
Sbjct: 154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  119 bits (299), Expect = 3e-31
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 28/227 (12%)

Query: 166 VFQDYASIQVDKREMPRIRIHP---NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND 222
           + +D+ S   + +  P                  +    +C    G P PT  W++  N 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLK--NG 57

Query: 223 GKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL----TL 273
            +F  +      +V  +   L   ++   D+G YTC+ EN  G      ++ V+      
Sbjct: 58  KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
           P +        S   G  +   C+      P + W+K++         D L    V    
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 331 ----------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
                      + +V E+DAG+Y C   N  G   +   + V  + +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  114 bits (287), Expect = 1e-29
 Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 95  QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN--------MIAGETLIIN 145
           ++  R  + P  + V   C +  +P  T++W K+ +E                  +LI+ 
Sbjct: 23  KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIME 81

Query: 146 GITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
            +  +D+G Y C ++N  G++   Y   +    R  P ++    A+ + +VG   +  C 
Sbjct: 82  SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 141

Query: 205 LEAGEPSPTQTWIRPD--NDGKFGPDVEVYQEL-----------GVLRFNNIATGDEGKY 251
           +   +  P   WI+    N  K+GPD   Y ++            VL   N+   D G+Y
Sbjct: 142 VY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 200

Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
            C   N  G+   +A++ VL          E
Sbjct: 201 ICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.7 bits (225), Expect = 6e-21
 Identities = 32/197 (16%), Positives = 46/197 (23%), Gaps = 47/197 (23%)

Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--- 310
           +AE+   +   N      T            +V     +   C A G PMPT+ W+K   
Sbjct: 1   MAEDFVSENSNNKRAPYWTNT--EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58

Query: 311 YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
                 R              + SV  SD G Y C+ +N  G+      + V  R     
Sbjct: 59  EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS---- 114

Query: 371 ISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIA 430
                                                    P      P   +   G   
Sbjct: 115 --------------------------------------RHRPILQAGLPANASTVVGGDV 136

Query: 431 NIRCSAIGATPISIRWQ 447
              C         I+W 
Sbjct: 137 EFVCKVYSDAQPHIQWI 153

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  118 bits (296), Expect = 4e-31
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVEVYQEL--GV 237
           P              G    + C      P   +  W+  +       D   +     G 
Sbjct: 9   PFPPEER-PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL---------PAVTITPSEYVSVRP 288
           L   N+   D+G Y+C   + +  + + +    L           PA  +   + V    
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           G+ +TLEC A G P+P + W K + P       +  TS AV  I +++  D G Y+C  +
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYECEAE 185

Query: 349 NSAGTEEKVITVAVE 363
           N  G ++    + V+
Sbjct: 186 NIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  109 bits (274), Expect = 4e-28
 Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 23/202 (11%)

Query: 85  AYLSPQANEVQVTPRQQSAPEGSQVTIEC---KSNDPSATIKWSKDNQEQLPP------N 135
            YL P   E      +    EG  + + C          + +W  +              
Sbjct: 5   GYLDPFPPE---ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV 61

Query: 136 MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV-------DKREMPRIRIHPN 188
                 L I  +  +D+G Y C + +           I +        K     I +   
Sbjct: 62  SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121

Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
                ++G    ++C    G P P   W +           E+     VL+  NI   DE
Sbjct: 122 -DVYALMGQNVTLECFAL-GNPVPDIRWRK--VLEPMPSTAEISTSGAVLKIFNIQLEDE 177

Query: 249 GKYTCIAENSAGKEVMNAYIHV 270
           G Y C AEN  GK+   A I+V
Sbjct: 178 GIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 48/201 (23%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVK--YIAPFDRNLERDELTSRAV 329
           P       E V V+ G+ + L C+         +  W+   +      +  R    +   
Sbjct: 9   PFPPEERPE-VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
             IA+V  SD G Y C   + + T+                  P                
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP---------------- 111

Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW--- 446
                                 P  I ++        G    + C A+G     IRW   
Sbjct: 112 ---------------------YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV 150

Query: 447 -QPLQGYFPSHVVEYNGELRL 466
            +P+     + +      L++
Sbjct: 151 LEPMPST--AEISTSGAVLKI 169

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 75  SFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLP 133
            F+ LI I      P   ++ V  +   A  G  VT+EC +  +P   I+W K  +  +P
Sbjct: 97  KFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-MP 155

Query: 134 PN---MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
                  +G  L I  I   DEG+Y C  +N +G   +D    ++
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRG---KDKHQARI 197

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  123 bits (309), Expect = 6e-31
 Identities = 52/368 (14%), Positives = 95/368 (25%), Gaps = 67/368 (18%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQE---QLPPNMIAGETLIING 146
           V++ P     P G  +T+ C+        + T+   +  +E   +      A  T  +  
Sbjct: 89  VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV 148

Query: 147 ITKADEGVYICSIQNAQGN-----VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
                   + C  +               A  Q+    +P       + +   V  +  +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIATGDEGKY--TCIAENS 258
            C L+   P           D +  P V    +        ++   DEG    TC     
Sbjct: 209 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268

Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN 318
              +     + + + PA  +  ++   V  G  +T++CEA  R   T++ V         
Sbjct: 269 NQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEAHPRAKVTLNGVP-------- 319

Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
                L  RA   + +  E +   + C        +        E R  YGP        
Sbjct: 320 --AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-------- 369

Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
                                                   P   T          C A G
Sbjct: 370 ---------------------------------RLDERDCPGNWTWPENSQQTPMCQAWG 396

Query: 439 ATPISIRW 446
                ++ 
Sbjct: 397 NPLPELKC 404

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  120 bits (302), Expect = 5e-30
 Identities = 40/286 (13%), Positives = 77/286 (26%), Gaps = 40/286 (13%)

Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
                    +     +Q T+ C  +       A +  +  +Q   P      ++      
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248

Query: 148 TKA---DEGVY--ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
                 DEG     C++     +         V     P   +          G    ++
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQ---ETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVK 304

Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
           C      P    T          GP  +       L        +   ++C A      +
Sbjct: 305 C---EAHPRAKVTLNG-VPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 353

Query: 263 VMN----AYIHVLTLPAVTI-TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
           +++      + VL  P +         +       T  C+A G P+P +  +K       
Sbjct: 354 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------- 406

Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
               D      +    +V     G Y C  +++ G   + +TV V 
Sbjct: 407 ----DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 86.5 bits (213), Expect = 2e-18
 Identities = 41/328 (12%), Positives = 75/328 (22%), Gaps = 68/328 (20%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
             + P+       G    + C     +P        P           +        +  
Sbjct: 2   TSVSPS-KVILPRGGSVLVTCSTSCDQP-MLLGIETP-----LPKKELLLPGNNRKVYEL 54

Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-- 300
               ++ +  C +    G+     ++ V   P              G+ LTL C+  G  
Sbjct: 55  SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA 114

Query: 301 -RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE----- 354
            R   TV  ++      R     E       T+   R+     + C  +     +     
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173

Query: 355 ---EKVITVAVEHRPEYGPIS----------------------PRPGADI-LPDGDEYYR 388
                   +     P   P                        P   A + L  GD+   
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233

Query: 389 PEP------------------EEGEYVY-AVGSNASISCSVE-------PPRITLRPVRQ 422
           P                    +EG           + S            P   +   + 
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP 293

Query: 423 TVKPGDIANIRCSAIGATPISIRWQPLQ 450
            V  G    ++C A     +++   P Q
Sbjct: 294 EVSEGTEVTVKCEAHPRAKVTLNGVPAQ 321

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  115 bits (291), Expect = 2e-30
 Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 20/198 (10%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVY 232
           + P        S   + G  A  +  +  G P P  +W      I           +   
Sbjct: 4   QAPTFTQPL-QSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGV--QISFS 59

Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL---PAVTITPSEYVSVRPG 289
                L    +   + G+Y+  A N +G+    A + V      P         ++VR G
Sbjct: 60  DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS-MTVRQG 118

Query: 290 EPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKC 345
             + L+   TG P P V + +    I       + ++         IA     D+G Y  
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG--DLYSLLIAEAYPEDSGTYSV 176

Query: 346 IGKNSAGTEEKVITVAVE 363
              NS G       + V+
Sbjct: 177 NATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  110 bits (278), Expect = 1e-28
 Identities = 49/196 (25%), Positives = 70/196 (35%), Gaps = 15/196 (7%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE----QLPPNMIAGE- 140
           ++ QA       +     EGS  T E   S  P   + W +D Q      LP   I+   
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVG 196
               L I  +TKA+ G Y     N  G      A + V      P        S T   G
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRL-QSMTVRQG 118

Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCI 254
            +  +Q  +  G P+P   + R   + +   D ++ QE  L  L        D G Y+  
Sbjct: 119 SQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177

Query: 255 AENSAGKEVMNAYIHV 270
           A NS G+    A + V
Sbjct: 178 ATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 83.2 bits (206), Expect = 8e-19
 Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 49/178 (27%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLER-DELTSRAV 329
           P  T      V V  G   T E   +G P+P VSW +    I+       +      RA 
Sbjct: 6   PTFTQPLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
            TI +V ++++G+Y     N +G       + V+                          
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET----------------------- 101

Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
                                 PP    R    TV+ G    ++    G     +++ 
Sbjct: 102 ---------------------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY 138

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  117 bits (294), Expect = 2e-30
 Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRF 240
           R+           +    +C    G P+P+ +W++             +++  +   L  
Sbjct: 19  RMDKK-LLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 76

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLEC 296
            ++   D G YTC+ EN  G       + VL      P +        +   G  +   C
Sbjct: 77  ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 136

Query: 297 EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--------------TIASVRESDAGQ 342
           +      P + W+K++      +  D      V                +A+V E D G+
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196

Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADI 379
           Y C   N  G  EK   ++V                 
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAG 233

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  116 bits (293), Expect = 3e-30
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 29/225 (12%)

Query: 95  QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIING 146
           ++  +  + P  + V   C +  +P+ +I W K+ +E    + I G        +L++  
Sbjct: 19  RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 78

Query: 147 ITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
           +  +D G Y C ++N  G++ Q Y   +       P ++    A+QT ++G   +  C +
Sbjct: 79  VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 138

Query: 206 EAGEPSPTQTWIRPD--NDGKFGPDVEVYQEL------------GVLRFNNIATGDEGKY 251
              +  P   W++    N  K GPD   Y  +              LR  N++  D G+Y
Sbjct: 139 Y-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197

Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
            C A N  G      ++ V    A          V   E  ++  
Sbjct: 198 LCRATNFIGVAEKAFWLSVHGPRAAEEEL-----VEADEAGSVHH 237

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 84.6 bits (209), Expect = 9e-19
 Identities = 30/166 (18%), Positives = 44/166 (26%), Gaps = 45/166 (27%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDA 340
           ++V     +   C A G P P++SW+K         R         +    + SV  SD 
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84

Query: 341 GQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAV 400
           G Y C+ +N  G+  +  T+ V  R                                   
Sbjct: 85  GNYTCVVENKFGSIRQTYTLDVLERS---------------------------------- 110

Query: 401 GSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                      P      P  QT   G      C         I+W
Sbjct: 111 --------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  118 bits (298), Expect = 2e-30
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 13/198 (6%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----G 236
           P  +     +        A + C +  G P P   W R   +          QE      
Sbjct: 5   PHFKEEL-RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS----EYVSVRPGEPL 292
            L   ++   D   Y   A N  G     A + V     + +  +      V    GE +
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 293 TLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
           +++   +G+P P ++W K    I            +  ++     V   DAG Y    KN
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 350 SAGTEEKVITVAVEHRPE 367
             G ++K + + V   P+
Sbjct: 183 RFGIDQKTVELDVADVPD 200

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  105 bits (263), Expect = 2e-25
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 34/234 (14%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLI 143
             +   R  +    S  T+ CK +  P   +KW +  +E +       +   +     LI
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN----ASQTFIVGDRA 199
           I  +T  D  VY     N  G+V     +  ++     +I +        +   + G+  
Sbjct: 66  IASVTDDDATVYQVRATNQGGSV---SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAE 256
            I+     G+P P  TW +  +        +V        ++  N +   D G Y   A+
Sbjct: 123 SIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
           N  G +     + V                 P  P  ++     R    ++W +
Sbjct: 182 NRFGIDQKTVELDVAD--------------VPDPPRGVKVSDVSRDSVNLTWTE 221

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 80.2 bits (198), Expect = 7e-17
 Identities = 29/177 (16%), Positives = 47/177 (26%), Gaps = 47/177 (26%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER----DELTSRAV 329
           P         ++VR     TL C+ TG P P V W +       +  +    +       
Sbjct: 5   PHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
             IASV + DA  Y+    N  G+     ++ VE                          
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA----------------------- 100

Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                               +  P+            G++ +I+    G     I W
Sbjct: 101 -------------------KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  119 bits (300), Expect = 2e-30
 Identities = 54/324 (16%), Positives = 84/324 (25%), Gaps = 59/324 (18%)

Query: 97  TPRQQSAPEGSQVTIECK------------SNDPSATIKWSKDNQEQLPPNMIA------ 138
           T RQ    E     I+C             ++    T+ W    Q++     I       
Sbjct: 13  TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72

Query: 139 -----GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQT 192
                 + L        D G Y C ++N      +    ++V  K       +     + 
Sbjct: 73  RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKL 131

Query: 193 FIVGDRADIQC----VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
           +I      I C            PT TW       K      V  E   L F      + 
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYM--GCYKIQNFNNVIPEGMNLSFLIALISNN 189

Query: 249 GKYTCIA----ENSAGKEVMNAYIHVLTLPAVTITP-------SEYVSVRPGEPLTLECE 297
           G YTC+                 + V+  P   + P              PGE L + C 
Sbjct: 190 GNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT 249

Query: 298 AT----GRPMPTVSWVK------------YIAPFDRNLERDELTSRAVYTIASVRESD-A 340
                       V W               I     +   ++ T   + +I  V   D  
Sbjct: 250 VYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLK 309

Query: 341 GQYKCIGKNSAGTEEKVITVAVEH 364
             Y C  +++ G   K   V  + 
Sbjct: 310 RSYVCHARSAKGEVAKAAKVKQKV 333

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 92.6 bits (229), Expect = 7e-21
 Identities = 38/246 (15%), Positives = 64/246 (26%), Gaps = 44/246 (17%)

Query: 194 IVGDRADIQCVLE----------AGEPSPTQTWIRPDNDGKF-------GPDVEVYQELG 236
              + A I+C L           A     T  W     D           P+  + +E  
Sbjct: 20  FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPLT 293
           VL F      D G YTC+  N+     +   + V+   +   +P +              
Sbjct: 80  VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139

Query: 294 LECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           + C            PT++W             + +      +      S+ G Y C+  
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVT 197

Query: 349 ----NSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNA 404
                      + +TV V   P+                        +   Y    G   
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVP-------------PVIHSPNDHVVYEKEPGEEL 244

Query: 405 SISCSV 410
            I C+V
Sbjct: 245 LIPCTV 250

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 89.5 bits (221), Expect = 8e-20
 Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 32/215 (14%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK------SNDPSATIKWSKDNQEQLPPN--MIAG 139
               N     P  +   E     I C        +    TI W     +    N  +  G
Sbjct: 117 DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG 176

Query: 140 ETLIINGITKADEGVYICSIQNAQGNV-FQDYASIQVDKREMPRIRIHP-------NASQ 191
             L       ++ G Y C +   +    F    ++ V     P+  + P       +   
Sbjct: 177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVY 236

Query: 192 TFIVGDRADIQCV---LEAGEPSPTQTWIRPDNDGKFGPDVEVYQE------------LG 236
               G+   I C        +      W                 E              
Sbjct: 237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQ 296

Query: 237 VLRFNNIATGDEG-KYTCIAENSAGKEVMNAYIHV 270
           +L    + + D    Y C A ++ G+    A +  
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 23/215 (10%), Positives = 47/215 (21%), Gaps = 62/215 (28%)

Query: 274 PAVTITPSEYVSVRPGEPLTLEC-----------EATGRPMPTVSWVKYIAPFDRNLERD 322
               +     + V   EP  ++C                   T+ W       D     +
Sbjct: 7   DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66

Query: 323 ELTSRAVYT-------IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
                   +             +D G Y C+ +N+    +    + V  +          
Sbjct: 67  FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS-------- 118

Query: 376 GADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCS 435
                     +  P       +Y       I+C                      N+   
Sbjct: 119 ---------CFNSPMKLPVHKLYIEYGIQRITC---------------------PNVDGY 148

Query: 436 AIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
              +   +I W      +Q    ++V+     L  
Sbjct: 149 FPSSVKPTITWYMGCYKIQN--FNNVIPEGMNLSF 181

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  120 bits (301), Expect = 2e-30
 Identities = 46/307 (14%), Positives = 81/307 (26%), Gaps = 68/307 (22%)

Query: 103 APEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA----------------------- 138
             +G  V + C  S   S    W   NQ ++  N  +                       
Sbjct: 6   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
              LII  +   D   YIC +++ +  V            ++    +  N+    + G  
Sbjct: 66  NFPLIIKNLKIEDSDTYICEVEDQKEEV------------QLLVFGLTANSDTHLLQGQS 113

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
             +         SP+     P          +  Q    L  + +   D G +TC    +
Sbjct: 114 LTLTLESP-PGSSPSVQCRSPRG--------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 164

Query: 259 AGKEVMNAYIHVLTL--PAVTITPSEYVSVRPGEPLT-----------LECEATGRPMP- 304
             K      I VL     +  +   E   V    PL            L  +A       
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224

Query: 305 ---TVSW------VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
              T         VK +    +     +L        A  + + +G      +   G   
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284

Query: 356 KVITVAV 362
           + + + V
Sbjct: 285 QEVNLVV 291

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  101 bits (253), Expect = 6e-24
 Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 37/192 (19%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------------------ 235
             GD  ++ C     + S    W   +     G       +                   
Sbjct: 7   KKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65

Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
              L   N+   D   Y C  E+   +         + L    +T +    +  G+ LTL
Sbjct: 66  NFPLIIKNLKIEDSDTYICEVEDQKEE---------VQLLVFGLTANSDTHLLQGQSLTL 116

Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
             E+     P+V              ++    + + +++ +   D+G + C    +    
Sbjct: 117 TLESPPGSSPSVQCR-------SPRGKNIQGGKTL-SVSQLELQDSGTWTCTVLQNQKKV 168

Query: 355 EKVITVAVEHRP 366
           E  I + V    
Sbjct: 169 EFKIDIVVLAFQ 180

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 52/175 (29%)

Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVK-----------------YIAPFDRNLERDEL 324
           + V  + G+ + L C A+ +      W                        DR   R  L
Sbjct: 2   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61

Query: 325 TSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD 382
             +  +   I +++  D+  Y C  ++             E +     ++      +L  
Sbjct: 62  WDQGNFPLIIKNLKIEDSDTYICEVEDQKE----------EVQLLVFGLTANSDTHLLQ- 110

Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT-LRPVRQTVKPGDIANIR 433
                             G + +++        P +    P  + ++ G   ++ 
Sbjct: 111 ------------------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVS 147

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  117 bits (293), Expect = 4e-30
 Identities = 36/274 (13%), Positives = 72/274 (26%), Gaps = 40/274 (14%)

Query: 105 EGSQVTIECKSND----PSATIKWSKDNQEQLPPNMIAGETLIINGITKA-----DEGVY 155
             +Q T+ C  +       A +  +  +Q   P      ++                   
Sbjct: 17  VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76

Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
            C++     +         V     P   +          G    ++C      P    T
Sbjct: 77  TCAVILGNQSQ---ETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVKC---EAHPRAKVT 129

Query: 216 WIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN----AYIHVL 271
                     G   +       L        +   ++C A      ++++      + VL
Sbjct: 130 L--------NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181

Query: 272 TLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
             P +         +       T  C+A G P+P +  +K           D      + 
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-----------DGTFPLPIG 230

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
              +V     G Y C  +++ G   + +TV V  
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 87.8 bits (217), Expect = 1e-19
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 95  QVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
            V   +    EG++VT++C+++ P A +  +    + L P       L++    + +   
Sbjct: 102 NVILTKPEVSEGTEVTVKCEAH-PRAKVTLNGVPAQPLGPRA----QLLLKATPEDNGRS 156

Query: 155 YICSIQN-AQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLEAGEPSP 212
           + CS      G +     + ++     PR+       + T+    +    C    G P P
Sbjct: 157 FSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLP 215

Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
               ++   DG           L +     +    EG Y C A ++ G+      ++VL
Sbjct: 216 ELKCLK---DGT--------FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 85.9 bits (212), Expect = 5e-19
 Identities = 39/242 (16%), Positives = 72/242 (29%), Gaps = 36/242 (14%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P++     + +   V  +  + C L+   P           D +  P V    +    + 
Sbjct: 7   PQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA 62

Query: 241 NNIAT-GDEG--KYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
           +   T  DEG  + TC        +     + + + PA  +  ++   V  G  +T++CE
Sbjct: 63  SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCE 121

Query: 298 ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV 357
           A  R   T++ V              L  RA   + +  E +   + C        +   
Sbjct: 122 AHPRAKVTLNGVP----------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 171

Query: 358 ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPR 414
                E R  YGP                       G + +   S  +  C       P 
Sbjct: 172 KNQTRELRVLYGPRLDER---------------DCPGNWTWPENSQQTPMCQAWGNPLPE 216

Query: 415 IT 416
           + 
Sbjct: 217 LK 218

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 52.4 bits (125), Expect = 9e-08
 Identities = 21/186 (11%), Positives = 42/186 (22%), Gaps = 53/186 (28%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGR---PMPTVSWVKYIAPFDRNLERDELTS 326
           VL      +     + V      T+ C   G        V         +  +     + 
Sbjct: 1   VLPATPPQLVSPRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 58

Query: 327 RAVYTI-ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            A  ++  +  +    +  C       ++E + TV +   P                   
Sbjct: 59  SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP------------------- 99

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
                                      P + L      V  G    ++C A     +++ 
Sbjct: 100 --------------------------APNVILTK--PEVSEGTEVTVKCEAHPRAKVTLN 131

Query: 446 WQPLQG 451
             P Q 
Sbjct: 132 GVPAQP 137

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  115 bits (289), Expect = 5e-30
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK----FGPDVEVYQELG 236
           P I   P  +Q   VG  A   C    G+P P+  W +   +GK          V ++ G
Sbjct: 7   PEIIRKPQ-NQGVRVGGVASFYCAAR-GDPPPSIVWRK---NGKKVSGTQSRYTVLEQPG 61

Query: 237 VLRFNNI----ATGDEGKYTCIAENSAGKEV-MNAYIHVLTL-------PAVTITPSEYV 284
            +    I    A  D+  Y C+AEN  G  V  +A + +          P +T  P   V
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYK 344
            +  G  + + C+A G P P + W+K     D +  R  L    +  I + RE D G+Y+
Sbjct: 122 -IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL-QIENSREEDQGKYE 179

Query: 345 CIGKNSAGTEE 355
           C+ +NS GTE 
Sbjct: 180 CVAENSMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  102 bits (255), Expect = 3e-25
 Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 23/206 (11%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
             P+ Q    G   +  C +  DP  +I W K+ + ++         +     + I  I 
Sbjct: 11  RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGK-KVSGTQSRYTVLEQPGGISILRIE 69

Query: 149 KA----DEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRA 199
                 D+  Y C  +N  G+     A++ +          P I   P  ++   VG   
Sbjct: 70  PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVIEVGHTV 128

Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENS 258
            + C    G P+P   WI+  N  K       Y  + G L+  N    D+GKY C+AENS
Sbjct: 129 LMTCKAI-GNPTPNIYWIK--NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 185

Query: 259 AGKEVMNA-YIHVLTLPAVTITPSEY 283
            G E   A  ++V      T     +
Sbjct: 186 MGTEHSKATNLYVKVRRVGTKHHHHH 211

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 56/208 (26%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
               P +   P     VR G   +  C A G P P++ W K    ++          L  
Sbjct: 3   GAHPPEIIRKPQN-QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV--LEQ 59

Query: 327 RAVYTIASVRE----SDAGQYKCIGKNSAGT-EEKVITVAVEHRPEYGPISPRPGADILP 381
               +I  +       D   Y+C+ +N  G       T+ +    +              
Sbjct: 60  PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA----------- 108

Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
                                          P IT  P  + ++ G    + C AIG   
Sbjct: 109 -----------------------------GFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139

Query: 442 ISIRW----QPLQGYFPSHVVEYNGELR 465
            +I W      +    P + ++ +G L+
Sbjct: 140 PNIYWIKNQTKVDMSNPRYSLK-DGFLQ 166

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 78  SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN- 135
           +L I            +   P  +    G  V + CK+  +P+  I W K+  + +  + 
Sbjct: 97  TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK-VDMSN 155

Query: 136 ---MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
               +    L I    + D+G Y C  +N+ G       ++ V  +       H 
Sbjct: 156 PRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVRRVGTKHH 208

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  116 bits (291), Expect = 1e-29
 Identities = 43/295 (14%), Positives = 87/295 (29%), Gaps = 33/295 (11%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-----DPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
           V +   ++    G   T+            + T  W+KD+Q    P+     TL +   T
Sbjct: 5   VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ----PHENNTATLTVADAT 60

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
             + G Y  ++Q+       +     +++ E+    I              ++   ++  
Sbjct: 61  SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVN-ITEPQHFYVSSQTDVELHATVKFS 119

Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
                            G DV        +          G YT      +     +A  
Sbjct: 120 GGKTPADNYELHYSWSKGEDV--IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177

Query: 269 HVLTLP-AVTITPSEYVSVRPGEPLTLEC--------EATGRPMPTVSWVKYI------- 312
            ++     V     E  +V  G  ++L          +++G P  T+ +  Y+       
Sbjct: 178 KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLS 237

Query: 313 -----APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                +     LE   +T        S    D  ++ C+ K     E++ + VA 
Sbjct: 238 PTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 81.4 bits (200), Expect = 3e-17
 Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 21/194 (10%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ---TWIRPDNDGKFGPDVEVYQELGV 237
             + I  N  + F+ GD   +   +   EP P+    TW +   D               
Sbjct: 3   FTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK---DD-----QPHENNTAT 53

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL--TLPAVTITPSEYVSVRPGEPLTLE 295
           L   +  + + G Y    +++     + + + ++      V IT  ++  V     + L 
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113

Query: 296 CE---ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
                + G+       + Y      ++    + +    TI        G Y       + 
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV----IDTTQDITIQEFTADKNGVYTVKVWGESE 169

Query: 353 TEEKVITVAVEHRP 366
                 +  +    
Sbjct: 170 DSAASASTKIMLAT 183

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMP---TVSWVKYIAPFDRNLERDELTSRAV 329
             V+I  ++      G+  TL     G  P+P   T +W K   P +         + A 
Sbjct: 3   FTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE--------NNTAT 53

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
            T+A     +AG YK   +++         V +    E       P    +    +
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  116 bits (292), Expect = 3e-29
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 17/198 (8%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGV 237
            +P +++    + +  VGD   ++C +E G       WI  + +             LG+
Sbjct: 157 GVPTLKVQV-PNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKSGGLPSLGL 214

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
              N  +  +    TC AEN  G+  ++  ++V    +V        +        +   
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ-----LHTAVEMHHWCIPFS 269

Query: 298 ATGRPMPTVSWVK---------YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
             G+P P++ W+          +I         +E        +      + G Y  +  
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329

Query: 349 NSAGTEEKVITVAVEHRP 366
           N  G     I  A    P
Sbjct: 330 NPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  105 bits (263), Expect = 2e-25
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 24/200 (12%)

Query: 90  QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP-----NMIAGETLI 143
               ++V     S   G  V + C+          W     EQ         + +    +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
            N  +  +     C  +N  G   +   S+QV+      +++H              I  
Sbjct: 217 ANVTSDLNRKNVTCWAENDVG---RAEVSVQVNVSFPASVQLHTAVEM-----HHWCIPF 268

Query: 204 VLEAGEPSPTQTWIRPD---------NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
            ++ G+P+P+  W+                  P        G LR N     + G YT +
Sbjct: 269 SVD-GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327

Query: 255 AENSAGKEVMNAYIHVLTLP 274
           A N  G+   +     +  P
Sbjct: 328 AANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.8 bits (183), Expect = 7e-15
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 1/116 (0%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV-R 336
                  SV  G+ + L C+  GR +    W+         + +         T+A+V  
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS 221

Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
           + +     C  +N  G  E  + V V         +               +P P 
Sbjct: 222 DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPS 277

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  112 bits (282), Expect = 5e-29
 Identities = 66/222 (29%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGP 227
            S++ +    PRI  HP+       G+ A + C  E G P+PT  W +        K  P
Sbjct: 1   GSLRQEDF-PPRIVEHPS-DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDP 57

Query: 228 DVEVYQ-ELGVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITP 280
                    G L F  I  G     DEG Y C+A N  G+ V  +A + V  L       
Sbjct: 58  RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117

Query: 281 SEYVSVRPGEPLTLECEAT-GRPMPTVSWVK---YIAPFDRN--LERDELTSRAVYTIAS 334
              V V  GEP  +EC+   G P PT+SW K    +   D    +   +L       I  
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM------ITY 171

Query: 335 VRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRP 375
            R+SDAG+Y C+G N  G  E +V  + V  RP         
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPS---FVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  104 bits (260), Expect = 6e-26
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 20/202 (9%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPNMIAGETLIING------ 146
             P      +G   T+ CK+   P+ TI+W K  +  E    +  +   L+ +G      
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73

Query: 147 -----ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
                 ++ DEGVY+C  +N  G      AS++V        R +P +     VG+ A +
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-AILRDDFRQNP-SDVMVAVGEPAVM 131

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
           +C    G P PT +W +  +        E      G L        D GKY C+  N  G
Sbjct: 132 ECQPPRGHPEPTISWKK--DGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189

Query: 261 K-EVMNAYIHVLTLPAVTITPS 281
           + E   A + VL  P+     +
Sbjct: 190 ERESEVAELTVLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 44/207 (21%), Positives = 64/207 (30%), Gaps = 61/207 (29%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
           P +   PS+ + V  GEP TL C+A GRP PT+ W K          D    R  L S +
Sbjct: 10  PRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 329 VY----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
           ++            D G Y C+ +N  G                                
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGE------------------------------- 97

Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP-IS 443
                         AV  +AS+  ++        P    V  G+ A + C      P  +
Sbjct: 98  --------------AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143

Query: 444 IRW----QPLQGYFPSHVVEYNGELRL 466
           I W     PL       +    G+L +
Sbjct: 144 ISWKKDGSPLDDK-DERITIRGGKLMI 169

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
            S+     PPRI   P    V  G+ A + C A G    +I W 
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  111 bits (278), Expect = 1e-28
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-------PDNDGKFGPDVEV 231
           E      +P  + T   G    ++C L+     P   W+R        D+     P  E 
Sbjct: 1   EESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59

Query: 232 YQEL----GVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSV 286
            Q+       LR  ++   D G+Y C+        V    Y+ +  LP     P +  +V
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED-RTV 118

Query: 287 RPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
               P  L C+A G P P  + W++        L           ++     +    + C
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQ----DAVPLATAPGHGPQ-RSLHVPGLNKTSSFSC 173

Query: 346 IGKNSAGTEEK 356
              N+ G    
Sbjct: 174 EAHNAKGVTTS 184

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  103 bits (257), Expect = 9e-26
 Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 28/195 (14%)

Query: 96  VTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQ---------------EQLPPNMIA 138
             P   +   G   T+ C  +       + W +D Q               E    + I 
Sbjct: 7   GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIV 66

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
              L I  +  +D G Y C +             + +    +P     P   +T      
Sbjct: 67  VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL--EGLPYFLEEPE-DRTVAANTP 123

Query: 199 ADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257
            ++ C  + G P P    W++   D         +     L    +       ++C A N
Sbjct: 124 FNLSCQAQ-GPPEPVDLLWLQ---DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAHN 177

Query: 258 SAGKEV-MNAYIHVL 271
           + G      A I VL
Sbjct: 178 AKGVTTSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 62/188 (32%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVK-----------YIAPFDRNLER 321
                 P   ++   G   TL C+       P V W++                    E+
Sbjct: 3   SPFVGNPGN-ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADIL 380
           D+    +   I S++ SD GQY+C+      T   +   V +E                 
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----------------- 104

Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA- 439
                                           P     P  +TV      N+ C A G  
Sbjct: 105 ------------------------------GLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134

Query: 440 TPISIRWQ 447
            P+ + W 
Sbjct: 135 EPVDLLWL 142

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  111 bits (279), Expect = 1e-28
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--G 236
           + PRI  HP         + A + C +E G+P PT  W +               +   G
Sbjct: 8   QSPRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65

Query: 237 VLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEP 291
            L F     G    D G+Y C+A+N  G+ V  +A + +  L        +   V  GE 
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125

Query: 292 LTLEC-EATGRPMPTVSWVK-------YIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
             LEC    G P PT+ W+K         A       R  +       I++V   D G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 344 KCIGKNSAGTEE-KVITVAVEHRPE 367
           KCI +N  GT E     + V+ +  
Sbjct: 186 KCIAQNLVGTRESSYAKLIVQVKAA 210

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  102 bits (256), Expect = 2e-25
 Identities = 48/199 (24%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE----------QLPPNMIAGETLII 144
             P      +    T+ CK    P  TI+W KD +               +        +
Sbjct: 14  EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
            G  + D G Y C  +N  G     +AS+Q+        R+ P        G+ A ++C 
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-AVLRDDFRVEP-KDTRVAKGETALLECG 131

Query: 205 LEAGEPSPTQTW------IRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAEN 257
              G P PT  W      +       FG    V   + G L  +N+   DEG Y CIA+N
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191

Query: 258 SAGKEV-MNAYIHVLTLPA 275
             G      A + V    A
Sbjct: 192 LVGTRESSYAKLIVQVKAA 210

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 81.1 bits (200), Expect = 8e-18
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 53/181 (29%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P +   P++ + V+  EP TL C+  G+P PT+ W K    ++  ++   R +    A++
Sbjct: 10  PRIIEHPTD-LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
              T+   +E D G+Y C+ KN  G                                   
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQ---------------------------------- 94

Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SIRW 446
                      AV  +AS+  +V      + P    V  G+ A + C      P  ++ W
Sbjct: 95  -----------AVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143

Query: 447 Q 447
            
Sbjct: 144 I 144

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 84  LAYLSPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE- 140
           +A L     + +V P+     +G    +EC      P  T+ W KD         ++   
Sbjct: 104 IAVLRD---DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160

Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
                      L+I+ +   DEG Y C  QN  G     YA + V  +       H 
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
           A ++   + PRI   P    VK  + A + C   G    +I W 
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWF 44

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  113 bits (284), Expect = 3e-27
 Identities = 45/349 (12%), Positives = 83/349 (23%), Gaps = 60/349 (17%)

Query: 85  AYLSPQANEVQVTPRQQSAPEGSQVTIECK---------------SNDPSATIKWSKDNQ 129
              +     ++  P          VT  C                S+  +  +  +   +
Sbjct: 211 NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGK 270

Query: 130 EQLPPN---------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
                               +++I G+ K D G Y+C   +                   
Sbjct: 271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE 330

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-------- 232
                        + G    + C     E    + W   +        + V         
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390

Query: 233 ------------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
                            +  N + + D G Y C+               +   P + +  
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG 450

Query: 281 SEYVSVRPGEPLTLEC----EATGRPMPTVSWVKYIAPF--------DRNLERDELTSRA 328
           +  V+   GE L + C    + +        W                +     +  SR 
Sbjct: 451 N--VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508

Query: 329 VY-TIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
           V  T+  V  +D G Y C + +     E   + VAVE R   G      
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL 557

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  104 bits (259), Expect = 5e-24
 Identities = 50/374 (13%), Positives = 94/374 (25%), Gaps = 78/374 (20%)

Query: 96  VTPRQQSAPEGSQVTIEC----KSNDPSATIKWSKDNQEQLPPNMIAGE----------- 140
             P + ++ EG+ V+I C     S +      W +         +I+ E           
Sbjct: 5   FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA 64

Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
                       + I  +++ D G Y C +             + ++  + P +      
Sbjct: 65  NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRG---LSFDVSLEVSQGPGLLNDTK- 120

Query: 190 SQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDGKFGPDVEVYQELG------------ 236
             T  +G    I C  +          + +         D   Y                
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180

Query: 237 -----VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV--------TITPSEY 283
                 +  N +   D G+Y C A + +     NA + VL             ++T    
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCA 240

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRES 338
           +           C  +      V              R      +        I  +R+ 
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300

Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVY 398
           DAG+Y C   +    +E     A +         PR    +                   
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV-----------------KG 343

Query: 399 AVGSNASISCSVEP 412
             GS+ ++ C    
Sbjct: 344 VAGSSVAVLCPYNR 357

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 97.0 bits (240), Expect = 1e-21
 Identities = 45/339 (13%), Positives = 87/339 (25%), Gaps = 61/339 (17%)

Query: 94  VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE------------ 140
           +    +  +   G  VTI C    + +   K         P  +I               
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174

Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
                      +++IN +  +D G Y+C   +   +  +  A +QV K E   +      
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPEPELVYEDLRG 233

Query: 190 SQTF------IVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQELGVL 238
           S TF       V + A   C  ++   +            P  +G+   + +       +
Sbjct: 234 SVTFHCALGPEVANVAKFLCR-QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY---VSVRPGEPLTLE 295
               +   D G+Y C A +    +  +             T       V    G  + + 
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352

Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---------------------TIAS 334
           C    +   ++ +               + S                          +  
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412

Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
           +   DAG Y C+          V    +E  P       
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN 451

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  106 bits (265), Expect = 1e-26
 Identities = 42/198 (21%), Positives = 65/198 (32%), Gaps = 33/198 (16%)

Query: 195 VGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
             +   +   +          W      IR  +  K G   E       L+ N     D+
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDK 71

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTL--------------------PAVTITPSEYVSVRP 288
           GKY     +          +                           V     + V+++ 
Sbjct: 72  GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131

Query: 289 GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
           G+ L L C   G P P VSW+K    +A  D    + E    A +TI  V  +D+G+Y  
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191

Query: 346 IGKNSAGTEEKVITVAVE 363
           + KN  G+E    TV+V 
Sbjct: 192 VVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 90.7 bits (225), Expect = 3e-21
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKADEG 153
           QS  EG Q+            + WS +    +  +             L IN  T  D+G
Sbjct: 14  QSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKG 72

Query: 154 VYICSIQNAQGNV-----------------FQDYASIQVDKREMPRIRIHPNASQTFIVG 196
            Y+  + + +                    FQ      + ++   R+        T   G
Sbjct: 73  KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132

Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTC 253
              ++ C +  G+P P  +W++ +          +  E G       N ++T D GKY  
Sbjct: 133 KALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191

Query: 254 IAENSAGKEVMNAYIHVL 271
           + +N  G E  +  + V 
Sbjct: 192 VVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 40/176 (22%)

Query: 284 VSVRPGEPLTLECEA----------TGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
                   L ++  A                 V+W      I   DR ++      +   
Sbjct: 3   SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDR-VKTGVTGEQIWL 61

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
            I     +D G+Y     +     +K + ++ +   E      R     + + +      
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN------ 115

Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
                                   +   P   T++ G   N+ C+  G  P  + W
Sbjct: 116 --------------------RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE-------QLPPNMIAGETLIINGITK 149
           P   +  EG  + + C    DP   + W K+ +         L           ING++ 
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVD 176
           AD G Y   ++N  G    + +   V 
Sbjct: 184 ADSGKYGLVVKNKYG---SETSDFTVS 207

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  105 bits (264), Expect = 1e-26
 Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 33/207 (15%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDGKFGPDVEVYQELGV----- 237
           P        G+ A + C      P         W+   +D +    V +           
Sbjct: 6   PEQRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64

Query: 238 ---------------------LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
                                +   N+   D G Y C  + + G       + VL  P+ 
Sbjct: 65  YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124

Query: 277 TITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
           T    +  S   G    L+CE   G       W K               +  V ++ + 
Sbjct: 125 TRCFVD-GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAV 362
               +G Y C  +N  G+++ ++ + V
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 99.0 bits (246), Expect = 4e-24
 Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 39/214 (18%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-----SNDPSATIKWSKDNQEQLP-------------- 133
            +    ++    +G    + CK      +     I+W     +                 
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 134 ----------------PNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
                                  ++ +  +  +D G Y C ++ A G          +  
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPG---VANKKFLLTV 118

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
              P          +  +G+   ++C  + G       W +  +               V
Sbjct: 119 LVKPSG-TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV 177

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           +   N ++   G Y+C  +N  G +     + V+
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 30/224 (13%), Positives = 55/224 (24%), Gaps = 82/224 (36%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPT----VSWVKYIAPFDRN--------------- 318
            TP + +    GE   L C+ T  P       + W+   +                    
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 319 -----------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
                         D  +  A   + +++ SD G Y+C  K + G   K   + V     
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV----- 118

Query: 368 YGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPG 427
                                                     +  P  T   V  + + G
Sbjct: 119 ------------------------------------------LVKPSGTRCFVDGSEEIG 136

Query: 428 DIANIRCSAI-GATPISIRWQ----PLQGYFPSHVVEYNGELRL 466
           +   ++C    G+ P+   WQ          P      +  + +
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  103 bits (258), Expect = 6e-26
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 22/181 (12%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
            ++ P   Q  I   R     +     P      I    +               L    
Sbjct: 29  FKLGPGEEQVLI--GRMHHDVIFI-EWPFRGFFDIHRSANT------------FFLVVTA 73

Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
                +G Y C  +    +     ++ V+    +++             LT+ C     P
Sbjct: 74  ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTVNAFP 132

Query: 303 MPTVSWVK----YIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
            P V W+       AP   N  + +++  S +V    S+ +       C+GKN       
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

Query: 357 V 357
           V
Sbjct: 193 V 193

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 87.8 bits (217), Expect = 3e-20
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 39/200 (19%)

Query: 102 SAPEGSQVTIECK----SNDPSATIKWSKDNQEQLP-----------------------P 134
           +A  G +VT+       S  P   + W K    +                          
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
                  L++     + +G Y+C ++  +  V        +   +   + +H      F 
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEV---TKQEHLSVVKPLTLSVHSE-RSQFP 117

Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDN----DGKFGPDVEVYQE--LGVLRFNNIATGDE 248
                 + C +    P P   W+ P+            V   ++  L V    ++     
Sbjct: 118 DFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176

Query: 249 GKYTCIAENSAGKEVMNAYI 268
              TC+ +N    E    Y+
Sbjct: 177 LPVTCVGKNDKE-EAHGVYV 195

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 63.5 bits (154), Expect = 8e-12
 Identities = 29/212 (13%), Positives = 52/212 (24%), Gaps = 76/212 (35%)

Query: 284 VSVRPGEPLTLECEA---TGRPMPTVSWVKYIA-------------------PFDRNLER 321
           V+   GE +TL       +  P   VSW K                      PF    + 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
               +     + +   S  G Y C  K       K   ++V                   
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV------------------- 101

Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
                                       V+P  +++   R       +  + C+      
Sbjct: 102 ----------------------------VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 133

Query: 442 ISIRWQPLQGYFPS-------HVVEYNGELRL 466
             ++W   +G  P+        + E +G L +
Sbjct: 134 PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSV 165

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 11/88 (12%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAG----------ETLII 144
           V   +   P+ S +T+ C  N  P   ++W      +  P    G             + 
Sbjct: 109 VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVD 168

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYAS 172
             + K       C  +N +      Y S
Sbjct: 169 LSLPKPWHLPVTCVGKNDKEEAHGVYVS 196

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----------LERDELTS- 326
             P E  +V  G  ++LEC+   R    +  ++       N          L  ++L   
Sbjct: 6   TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE- 385
           +A++ I SV+  D+GQY+C+    A  + K +TV V    +   +        +P   E 
Sbjct: 66  KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV----KASYMRIDTRILEVPGTGEV 121

Query: 386 ------YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT--VKPGDIANIRCSA 436
                    P  E    V     +   + S       L  V     +KP    N  C  
Sbjct: 122 QLTCQARGYPLAE----VSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  101 bits (252), Expect = 3e-25
 Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 37/187 (19%)

Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPD--------------NDGKFGPDVEVYQEL----- 235
            GD  ++ C     + S    W   +                 K     +  + L     
Sbjct: 9   KGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
             L   N+   D   Y C  E+    EV      +               +  G+ LTL 
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTH--------LLQGQSLTLT 118

Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
            E+     P+V       P  +N++  +       +++ +   D+G + C    +    E
Sbjct: 119 LESPPGSSPSVQCRS---PRGKNIQGGK-----TLSVSQLELQDSGTWTCTVLQNQKKVE 170

Query: 356 KVITVAV 362
             I + V
Sbjct: 171 FKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 98.1 bits (244), Expect = 4e-24
 Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 45/199 (22%)

Query: 103 APEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-----------------------A 138
             +G  V + C  S   S    W   NQ ++  N                          
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
              LII  +   D   YIC +++ +  V            ++    +  N+    + G  
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEEV------------QLLVFGLTANSDTHLLQGQS 114

Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
             +         SP+     P          +  Q    L  + +   D G +TC    +
Sbjct: 115 LTLTLESP-PGSSPSVQCRSPRG--------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 165

Query: 259 AGKEVMNAYIHVLTLPAVT 277
             K      I VL     +
Sbjct: 166 QKKVEFKIDIVVLAFQKAS 184

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 60.4 bits (146), Expect = 6e-11
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 82  ICLAYLSPQANEVQV----TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNM 136
           IC      +  ++ V            +G  +T+  +S    S +++      + +    
Sbjct: 84  ICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG- 142

Query: 137 IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
              +TL ++ +   D G + C++   Q  V      I +
Sbjct: 143 ---KTLSVSQLELQDSGTWTCTVLQNQKKV---EFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 56.9 bits (137), Expect = 9e-10
 Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 52/175 (29%)

Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVK-----------------YIAPFDRNLERDEL 324
           + V  + G+ + L C A+ +      W                        DR   R  L
Sbjct: 3   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62

Query: 325 TSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD 382
             +  +   I +++  D+  Y C  ++             E +     ++      +L  
Sbjct: 63  WDQGNFPLIIKNLKIEDSDTYICEVEDQKE----------EVQLLVFGLTANSDTHLLQ- 111

Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT-LRPVRQTVKPGDIANIR 433
                             G + +++        P +    P  + ++ G   ++ 
Sbjct: 112 ------------------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVS 148

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score =  101 bits (253), Expect = 4e-25
 Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 23/212 (10%)

Query: 179 EMPRIRIHPNASQTFIV----GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE--VY 232
             P I    +      +         I C       +   +      + +F PD     +
Sbjct: 3   RSPFIASVSDQHGVVYITENKNKTVVIPC--LGSISNLNVSLCARYPEKRFVPDGNRISW 60

Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL---TLPAVTITPSEYVSVRPG 289
                    +      G   C A+ +        YI V+    +  V ++PS  + +  G
Sbjct: 61  DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120

Query: 290 EPLTLECEATGRPMPTV--SWVKYIAPFDRNLERDELTSR----------AVYTIASVRE 337
           E L L C A       +  +W    +        +               +  TI  V  
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
           SD G Y C   +   T++    V V   P  G
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG 212

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 96.4 bits (239), Expect = 4e-23
 Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 17/190 (8%)

Query: 102 SAPEGSQVTIECKSNDPSATIKW-SKDNQEQLPPNMIA-----GETLIINGITKADEGVY 155
           +  +   V I C  +  +  +   ++  +++  P+         +   I     +  G+ 
Sbjct: 20  TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79

Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG-EPSPTQ 214
            C  +    +       + V    +  + + P+      VG++  + C            
Sbjct: 80  FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139

Query: 215 TWIRPDNDGKFGPDV----------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
            W  P +  +    V          E+ + L  L  + +   D+G YTC A +    +  
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199

Query: 265 NAYIHVLTLP 274
           + ++ V   P
Sbjct: 200 STFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 21/142 (14%)

Query: 273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT--SRAV 329
           + +V+      Y++    + + + C  +      VS            + + ++  S+  
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKG 65

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
           +TI S   S AG   C  K +  + + ++ + V        +   P   I          
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI---------- 115

Query: 390 EPEEGEYVYAVGSNASISCSVE 411
                    +VG    ++C+  
Sbjct: 116 -------ELSVGEKLVLNCTAR 130

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  100 bits (249), Expect = 7e-25
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 20/184 (10%)

Query: 101 QSAPEGSQVTIECKSND---PSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
                GS++ + C  ND        +W K     L  + + G+       +    G Y C
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVV-LKEDALPGQKTEFKVDSDDQWGEYSC 66

Query: 158 SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
                         +  +     PR++   + S+    G+ A + C  E+  P     W 
Sbjct: 67  VFLPEPM------GTANIQLHGPPRVKAVKS-SEHINEGETAMLVCKSESVPPVTDWAWY 119

Query: 218 RPDNDGKFGPD--------VEVYQELGVLRFNNI-ATGDEGKYTCIAENSAGKEVMNAYI 268
           +  +               V   Q    L   N+    D G+Y C   +S G +     +
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

Query: 269 HVLT 272
            V +
Sbjct: 180 RVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 93.9 bits (233), Expect = 1e-22
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 20/179 (11%)

Query: 195 VGDRADIQCVLEAG-EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
           +G +  + C L           W++    G    +  +        F   +    G+Y+C
Sbjct: 12  LGSKILLTCSLNDSATEVTGHRWLK---GGVVLKEDAL--PGQKTEFKVDSDDQWGEYSC 66

Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYI 312
           +           A I +   P V    S    +  GE   L C++   P +   +W K  
Sbjct: 67  VFLPEPM---GTANIQLHGPPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKIT 122

Query: 313 APFDRNLE-----RDELTSRAVYT---IASV-RESDAGQYKCIGKNSAGTEEKVITVAV 362
              D+ L      R  ++S    +   I ++  E+D GQY+C G +S G+++ +IT+ V
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 15/164 (9%), Positives = 32/164 (19%), Gaps = 58/164 (35%)

Query: 286 VRPGEPLTLECEATGRPMPTVS--WVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
              G  + L C             W+K        + +++             +   G+Y
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLK-----GGVVLKEDALPGQKTEFKVDSDDQWGEY 64

Query: 344 KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSN 403
            C+             + +                                         
Sbjct: 65  SCVFLPEPMGT---ANIQLH---------------------------------------- 81

Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
                   PPR+      + +  G+ A + C +          W
Sbjct: 82  -------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 18/99 (18%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKS--NDPSATIKWSKDNQEQLPPNMIAGE---------- 140
            V+     +   EG    + CKS    P     W K    +    M   E          
Sbjct: 85  RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144

Query: 141 --TLIINGIT-KADEGVYICSIQNAQGNVFQDYASIQVD 176
              L I  +  +AD G Y C+  +++G    D A I + 
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKG---SDQAIITLR 180

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 95.0 bits (236), Expect = 4e-23
 Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 21/188 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P++ ++P        G+   + C         +  W     +G         +    L  
Sbjct: 5   PKVSLNPP-WNRIFKGENVTLTCNGNNFFEVSSTKWFH---NGSLSE-----ETNSSLNI 55

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-T 299
            N    D G+Y C  +     E    Y+ V +   +    +E V    G+PL L C    
Sbjct: 56  VNAKFEDSGEYKCQHQQVNESE--PVYLEVFSDWLLLQASAEVV--MEGQPLFLRCHGWR 111

Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
              +  V + K                    +I +    D+G Y C GK      E + +
Sbjct: 112 NWDVYKVIYYK------DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165

Query: 359 TVAVEHRP 366
            + V   P
Sbjct: 166 NITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 90.0 bits (223), Expect = 3e-21
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 20/184 (10%)

Query: 94  VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
           V + P      +G  VT+ C   +    ++ KW  +       N     +L I      D
Sbjct: 7   VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----SSLNIVNAKFED 62

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            G Y C  Q    +       + ++      +      ++  + G    ++C        
Sbjct: 63  SGEYKCQHQQVNES-----EPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDV 115

Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHV 270
               + +   DG+    ++ + E   +   N    D G Y C  +            I V
Sbjct: 116 YKVIYYK---DGEA---LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

Query: 271 LTLP 274
           +  P
Sbjct: 170 IKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 85  AYLSPQANEVQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGETL 142
            YL   ++ + +    +   EG  + + C    N     + + KD +            +
Sbjct: 79  VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--ENHNI 136

Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
            I   T  D G Y C+ +  Q +   +  +I V   + PR +
Sbjct: 137 SITNATVEDSGTYYCTGKVWQLDYESEPLNITV--IKAPREK 176

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 92.3 bits (229), Expect = 8e-22
 Identities = 25/198 (12%), Positives = 50/198 (25%), Gaps = 26/198 (13%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNI 243
           +   +   +       E    +    +      I      K   D      +  +    +
Sbjct: 11  AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG--IIEMFMEKL 68

Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS-----------------V 286
              DEG YT   ++          +       +                          V
Sbjct: 69  QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 128

Query: 287 RPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
                + L+C+       T + W K       + + D         I    + DAG Y+ 
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 188

Query: 346 IGKNSAGTEEKVITVAVE 363
           I K+  G ++  + +  E
Sbjct: 189 ILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 81.1 bits (200), Expect = 7e-18
 Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 24/198 (12%)

Query: 97  TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI--------AGETLIING 146
           +       E  QV    +      +A + +  + +E                   + +  
Sbjct: 8   SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67

Query: 147 ITKADEGVYICSIQNAQG----------NVFQDYASIQVDKREMPRIRIHP----NASQT 192
           +   DEG Y   +Q+ +           +VF+        +R+    +  P      S  
Sbjct: 68  LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127

Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYT 252
                   ++C +   +      W + + +       +    +  L     +  D G Y 
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYE 187

Query: 253 CIAENSAGKEVMNAYIHV 270
            I ++  GK+     +  
Sbjct: 188 VILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 47/175 (26%)

Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVK----------YIAPFDRNLERDELTSRAVYTI 332
           V +     +    +A        V+++           Y    DRN    E+       +
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF------M 65

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
             +++ D G Y    ++   T    + +  +   +            L    E+ R E  
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK------------LQKEAEFQRQEWI 113

Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
                             + P      +   V       ++C          I W
Sbjct: 114 RK----------------QGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVW 151

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE----TLIINGITK 149
           V            V ++CK  +      I W KD +E         +    TL+I   +K
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
            D G+Y   +++ +G   +D + +++
Sbjct: 181 KDAGIYEVILKDDRG---KDKSRLKL 203

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 93.4 bits (231), Expect = 1e-21
 Identities = 43/249 (17%), Positives = 71/249 (28%), Gaps = 58/249 (23%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLE--AGEPSPTQTWIRPDNDGKFGPDVEVYQEL-- 235
           +P + +         VG+   + CV++    +      W+   +       V  Y     
Sbjct: 5   LPGLTVSS-PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 236 --------------------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
                               G L   ++   DEG YTC         VM   + +  LP 
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP- 122

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK---------YIAPFDRNLERDE 323
                   + VR G+   + C            V+W+           +  +D N+   +
Sbjct: 123 ---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 324 LTSRAVY-----------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
             S   +                  + +V+ESD G Y C          K I + V    
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239

Query: 367 EYGPISPRP 375
               ISP P
Sbjct: 240 FQRTISPTP 248

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 84.9 bits (209), Expect = 9e-19
 Identities = 37/254 (14%), Positives = 68/254 (26%), Gaps = 66/254 (25%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMIAGE--- 140
           S     + V+  Q     G  V + C            + W     +      +      
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 141 -----------------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
                                  +L++  + KADEG+Y C I+    ++        V+ 
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM---VMKKPVEL 118

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ--TWIRPDNDGKFGPDVEVYQEL 235
             +P             VGD   ++C +++ E        W+           V  Y   
Sbjct: 119 WVLP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSN 174

Query: 236 --------------------------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
                                     G ++   +   D+G YTC       +      +H
Sbjct: 175 MRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234

Query: 270 VLTL-PAVTITPSE 282
           V+      TI+P+ 
Sbjct: 235 VVQDEFQRTISPTP 248

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 58.7 bits (141), Expect = 8e-10
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 26/124 (20%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLEC---EATGRPMPTVSWVK---------------- 310
              LP +T++  + + V  GE + + C       + +  V W+                 
Sbjct: 2   SQGLPGLTVSSPQ-LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 311 ----YIAPFD--RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
                   F    +L  D   +     +  V+++D G Y C  +    +      V +  
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120

Query: 365 RPEY 368
            PE 
Sbjct: 121 LPEE 124

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 91.0 bits (225), Expect = 2e-21
 Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 19/202 (9%)

Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
           +I   P +     +GD   + C    G  SP  +W R   D      V        L  N
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTT-GCESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMN 59

Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG- 300
            ++ G+E  Y C A   + K      + + + P           +  G+P+T++C     
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADV 118

Query: 301 --RPMPTVSWVKYIAPFDRNLERDELTSRAV------YTIASVRESDAGQYKCIGKNSAG 352
                  +  +K           ++   +++       T   V E       C  K    
Sbjct: 119 YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178

Query: 353 -------TEEKVITVAVEHRPE 367
                    + V  + V   P+
Sbjct: 179 EMDSVPTVRQAVKELQVYISPK 200

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 24/205 (11%)

Query: 93  EVQVTPRQQ-SAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---TLIINGI 147
           +++ TP  +  A  G  V++ C  +   S    W       L   +       TL +N +
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
           +  +E  Y+C+       + +    +++            + S     G    ++C +  
Sbjct: 62  SFGNEHSYLCTATCESRKL-EKGIQVEIYS---FPKDPEIHLSGPLEAGKPITVKCSVAD 117

Query: 208 GEPSPTQTW--------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
             P              ++     +      +  +   + F  +         C A+   
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177

Query: 260 GKE-------VMNAYIHVLTLPAVT 277
            +             + V   P  T
Sbjct: 178 DEMDSVPTVRQAVKELQVYISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 75.2 bits (184), Expect = 7e-16
 Identities = 27/176 (15%), Positives = 44/176 (25%), Gaps = 55/176 (31%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT--SRAVYTIA 333
           +  TP      + G+ ++L C  TG   P  SW   I   D  L        + +  T+ 
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI---DSPLNGKVTNEGTTSTLTMN 59

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEE 393
            V   +   Y C     +   EK I V +                               
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIY------------------------------ 89

Query: 394 GEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI---SIRW 446
                              P+     +   ++ G    ++CS     P     I  
Sbjct: 90  -----------------SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 89.1 bits (221), Expect = 4e-21
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 21/184 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             +++ P      +  D   + C       S +  W     +G       +         
Sbjct: 5   AVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFH---NGN-----LIPTHTQPSYR 55

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
                 D G+YTC    ++  +    ++ VL    V  TP        GE + L C +  
Sbjct: 56  FKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQE--GETIMLRCHSWK 111

Query: 301 RPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
                 V++ +          +        ++I     S +G Y C G         K +
Sbjct: 112 DKPLVKVTFFQ------NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPV 165

Query: 359 TVAV 362
           T+ V
Sbjct: 166 TITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 86.8 bits (215), Expect = 3e-20
 Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 19/177 (10%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIIN 145
           +P    +++ P   +  +   VT+ C+   +  S +I+W  +            +     
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----QPSYRF 56

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
                D G Y C           D   + V       +   P     F  G+   ++C  
Sbjct: 57  KANNNDSGEYTCQTGQTS---LSDPVHLTV--LFEWLVLQTP--HLEFQEGETIMLRCHS 109

Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
              +P    T+ +   +GK     +                  G Y C         
Sbjct: 110 WKDKPLVKVTFFQ---NGKS---QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLF 160

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 23/165 (13%), Positives = 43/165 (26%), Gaps = 31/165 (18%)

Query: 40  VSAENHEVTVYEGGDAELKCNTYYAPGRW--MWLNFYSFL-----SLIII---------- 82
           +  E   + V +     L C    +P      W +  + +                    
Sbjct: 7   LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEY 66

Query: 83  -CLA---YLSPQAN-EVQVTPRQQSAP-----EGSQVTIEC--KSNDPSATIKWSKDNQE 130
            C      LS   +  V         P     EG  + + C    + P   + + ++ + 
Sbjct: 67  TCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKS 126

Query: 131 QLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           Q   +     T  I     +  G Y C+             +I V
Sbjct: 127 QKFSH--LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 87.7 bits (216), Expect = 1e-19
 Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 64/240 (26%)

Query: 187 PNASQTFIVGDRADIQC--VLEAGEPSPTQTWIR-------------------------- 218
            +       G   ++ C   L      P  +W++                          
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 219 ----PDNDGKFGPDVEVYQELGV-LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
                ++ G F     V       LR  ++   D G+Y C     + +         + L
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127

Query: 274 --------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE----- 320
                     V ++ +E V V  G  +T+ C  T      V+W      F+         
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQP 187

Query: 321 ------------------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                             R   +      I + + +DAG+  C      G  +   +  +
Sbjct: 188 LANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 83.0 bits (204), Expect = 4e-18
 Identities = 28/245 (11%), Positives = 52/245 (21%), Gaps = 68/245 (27%)

Query: 94  VQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMI------------ 137
           V+ T  +     G  V + C     ++     I W K         +             
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 138 -----------------------AGETLIINGITKADEGVYICSIQN--AQGNVFQDYAS 172
                                  A  TL +  +   D G Y C +     +     D  S
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124

Query: 173 IQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN---DGKFG 226
           + +          + +          G+   + C       +   TW        + + G
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETG 183

Query: 227 PDVEVYQ--------------------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
               +                          L        D G+  C      G+   + 
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243

Query: 267 YIHVL 271
              +L
Sbjct: 244 SSTIL 248

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 58.8 bits (141), Expect = 6e-10
 Identities = 25/216 (11%), Positives = 44/216 (20%), Gaps = 73/216 (33%)

Query: 276 VTIT-PSEYVSVRPGEPLTLECE---ATGRPMPTVSWVK--------------------- 310
           +T+      V V  G  + L C    A     P +SW+K                     
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 311 --YIAPFDRNLERDELTSRAVY--------TIASVRESDAGQYKCIGKNSAGTEEKVITV 360
             ++          +   RA           +  V   D G+Y C     +   E  +  
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 361 AVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPV 420
                   G                                                   
Sbjct: 123 KSVVLKVTGHTPS--------------------------------------NNVHVSTAE 144

Query: 421 RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH 456
              V  G+   + C        ++ W     +F ++
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 39  FVSAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVT 97
              +    V V EG D  + C     A     W               Y  P   E   T
Sbjct: 138 VHVSTAEVVQVDEGNDITMTCPCTDCANANVTW---------------YTGPTFFENYET 182

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
              Q     +Q  I   S++ +    +S                L+I      D G   C
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGAR------------NLVIRAAKITDAGRVWC 230

Query: 158 SIQNAQGNVFQD 169
            +   QG +  D
Sbjct: 231 ELATGQGELDAD 242

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
             Y   +     +           + A  +     V    G  + + CE    P  T+SW
Sbjct: 1   ATYAAASSALVPRGSH--------MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 309 VKY---IAPFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
            +    +   +  N++     S +   +    E+D G Y C   N  G E     +    
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

Query: 365 RPE 367
            P 
Sbjct: 113 TPS 115

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 177 KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVE 230
              M   ++    +     G++ +I C +    PS T +W      +   N       + 
Sbjct: 14  GSHMYAPKLQGPVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNI--KIY 70

Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
                  L     +  D G Y C A N  G+E +   +     P+
Sbjct: 71  NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPS 115

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 30/136 (22%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------NMIAGETLIINGI 147
           P      EG+QV I C+    PSATI W +D Q  LP          N  +   L +   
Sbjct: 25  PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQL-LPSSNYSNIKIYNTPSASYLEVTPD 83

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
           ++ D G Y C+  N  G   Q+     +           P++     V   +        
Sbjct: 84  SENDFGNYNCTAVNRIG---QESLEFIL------VQADTPSSPSIDQVEPYSS------- 127

Query: 208 GEPSPTQTWIRPDNDG 223
              +    +  P+  G
Sbjct: 128 ---TAQVQFDEPEATG 140

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 86.5 bits (213), Expect = 5e-19
 Identities = 44/292 (15%), Positives = 91/292 (31%), Gaps = 26/292 (8%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPNMIAGETLIINGITKA 150
           +  V+P +   P G  V + C ++   P      +   +++L       +   ++ +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
           ++   +C      G   Q  A   +     P             VG    ++C +E G P
Sbjct: 59  EDSQPMCYSNCPDG---QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115

Query: 211 SP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY- 267
               T   +R + + K  P V    E                ++C  E     + +  + 
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174

Query: 268 -------IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE 320
                  +    LPA          +      T+ C   G   P      ++A  D+ L 
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLF-PVSEAQVHLALGDQRLN 233

Query: 321 R------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
                  D  +++A  ++ +  +    +  C       ++E + TV +   P
Sbjct: 234 PTVTYGNDSFSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 64.9 bits (157), Expect = 8e-12
 Identities = 32/241 (13%), Positives = 61/241 (25%), Gaps = 41/241 (17%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
             + P+       G    + C     +P        P    +               +  
Sbjct: 2   TSVSPS-KVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPG-----NNRKVYEL 54

Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATG- 300
               ++ +  C +    G+     ++ V   P  V + P        G+ LTL C+  G 
Sbjct: 55  SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEGG 113

Query: 301 --RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE---- 354
             R   TV  ++      R     E       T+   R+     + C  +     +    
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172

Query: 355 ----EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSV 410
                    +     P   P    P                     V  V +  ++ CS+
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSP--------------------RVLEVDTQGTVVCSL 212

Query: 411 E 411
           +
Sbjct: 213 D 213

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 27/203 (13%), Positives = 64/203 (31%), Gaps = 15/203 (7%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQE---QLPPNMIAGETLIING 146
           V++ P     P G  +T+ C+        + T+   +  +E   +      A  T  +  
Sbjct: 89  VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV 148

Query: 147 ITKADEGVYIC----SIQNAQGNVFQD-YASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
                   + C     ++     +F++  A  Q+    +P       + +   V  +  +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE---GKYTCIAENS 258
            C L+   P           D +  P V    +    + +   T ++    + TC     
Sbjct: 209 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268

Query: 259 AGKEVMNAYIHVLTLPAVTITPS 281
              +     + + + PA  +  +
Sbjct: 269 NQSQETLQTVTIYSFPAPNVILT 291

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 23/184 (12%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             + + P    + +  D   ++C         +  W     +           +      
Sbjct: 8   AVVFLEPQ-WYSVLEKDSVTLKCQGAYSPEDNSTQWFH---NESLIS-----SQASSYFI 58

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT- 299
           +     D G+Y C    S   +     + V     +   P      +  +P+ L C +  
Sbjct: 59  DAATVNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWK 114

Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--- 356
              +  V++++         +R      + + I      D+G Y C G   +        
Sbjct: 115 NTALHKVTYLQ------NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168

Query: 357 VITV 360
            IT+
Sbjct: 169 NITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 19/171 (11%)

Query: 94  VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
           V + P+  S  E   VT++C+   +    + +W  +    +        +  I+  T  D
Sbjct: 10  VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL-ISSQ---ASSYFIDAATVND 65

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            G Y C       +   D   ++V       +   P     F   D   ++C        
Sbjct: 66  SGEYRC---QTNLSTLSDPVQLEV--HIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTAL 118

Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
              T+++   +GK   D + +              D G Y C     +   
Sbjct: 119 HKVTYLQ---NGK---DRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNV 163

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
             V + P    SV   + +TL+C+    P   +  W       + +L     +  + Y I
Sbjct: 8   AVVFLEPQW-YSVLEKDSVTLKCQGAYSPEDNSTQWFH-----NESLIS---SQASSYFI 58

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
            +   +D+G+Y+C    S  ++   + V        G +  +    +  + D
Sbjct: 59  DAATVNDSGEYRCQTNLSTLSDPVQLEV------HIGWLLLQAPRWVFKEED 104

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 82.8 bits (204), Expect = 2e-18
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 29/192 (15%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----------- 140
           EV +        E + V +   +         W K N        IA             
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGN-TTAIDKEIARFVPNSNMNFTGQ 59

Query: 141 ------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
                       +L+   IT  D GVY   + +      Q      V  + + +  +   
Sbjct: 60  AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVH-QPVTQPFLQVT 118

Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
            + T    D   + C   + +      W+      +    + + Q   +LR + I   D 
Sbjct: 119 -NTTVKELDSVTLTC--LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDA 175

Query: 249 GKYTCIAENSAG 260
           G+Y C   N   
Sbjct: 176 GEYQCEISNPVS 187

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
           G L F  I   D G YT    +   +        HV              +V+  + +TL
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130

Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSR-AVYTIASVRESDAGQYKCIGKNSAGT 353
            C +       + W+          ER  L+   ++  I  ++  DAG+Y+C   N    
Sbjct: 131 TCLSND-IGANIQWLFNSQSLQLT-ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188

Query: 354 EE-KVITVAVEHRPEY 368
                I + +   P +
Sbjct: 189 RRSNSIKLDIIFDPHH 204

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGIT 148
             +     +  E   VT+ C SND  A I+W  ++Q  L              L I+ I 
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQS-LQLTERMTLSQNNSILRIDPIK 171

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQV 175
           + D G Y C I N       +   + +
Sbjct: 172 REDAGEYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK------------YIAPFDRNLERDE 323
           VTI       V     + L        +   +W K            ++   + N     
Sbjct: 2   VTIEA-VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 324 LTSRAVY------TIASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEYGPISPRP 375
            + R +           +   D G Y     +      +  +   V        +    
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 81.5 bits (201), Expect = 3e-18
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 25/181 (13%)

Query: 194 IVGDRADIQC-VLEAGEPSPTQTWIRPDND---GKFGPDVEVYQEL--------GVLRFN 241
            +G   ++     +  +      W +  +     +F  + E ++E         G L+  
Sbjct: 12  ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71

Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR 301
           ++ T D+  Y     ++ GK V+     +     V+  P    +       TL CE    
Sbjct: 72  HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS-KPKISWT---CINTTLTCEVMNG 127

Query: 302 PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361
             P ++  +         +   L             S + ++KC   N    E  V  V+
Sbjct: 128 TDPELNLYQ---------DGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

Query: 362 V 362
            
Sbjct: 179 C 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 35/183 (19%)

Query: 106 GSQVTIECKS---NDPSATIKWSKDNQEQLPPNMIAGE---------------TLIINGI 147
           G  + ++  S   +D    IKW K + ++        +               TL I  +
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
              D+ +Y  SI + +G    +     +      +I+   +  +         + C +  
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLE-KIFDL------KIQERVSKPKISWTCINTTLTCEVMN 126

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
           G   P     +   DGK        +    +  +   T    K+ C A N   KE     
Sbjct: 127 G-TDPELNLYQ---DGK------HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEP 176

Query: 268 IHV 270
           +  
Sbjct: 177 VSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 44/157 (28%)

Query: 278 ITPSEYVSVRPGEPLTLECE--ATGRPMPTVSWVKY-----IAPFDRNL------ERDEL 324
           IT +       G+ + L+         +  + W K      IA F +        +  +L
Sbjct: 3   ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62

Query: 325 TSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPD 382
                  I  ++  D   YK    ++ G    EK+  + ++ R                 
Sbjct: 63  FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV---------------- 106

Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT 416
                  +P+    +     N +++C V     P + 
Sbjct: 107 ------SKPK----ISWTCINTTLTCEVMNGTDPELN 133

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
            +   + +    SQ+   G      C  ++  P+ T  W R  N GK       +   G+
Sbjct: 7   SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN-GKLPSRAMDFN--GI 63

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
           L   N+   D G Y C   N    +   A +HV
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
             VT+      SVRPG  +T  C A +  P  T+ W +     +  L    +    + TI
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR---LHNGKLPSRAMDFNGILTI 66

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            +V+ SDAG Y C G N    ++   T+ V+
Sbjct: 67  RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 85  AYLSPQANEVQVT---PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN-MIA 138
           A L+  +  + VT    R QS   G+ VT  C   S  P+ T+ W++ +  +LP   M  
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60

Query: 139 GETLIINGITKADEGVYICSIQNAQGNV 166
              L I  +  +D G Y+C+  N     
Sbjct: 61  NGILTIRNVQPSDAGTYVCTGSNMFAMD 88

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 404 ASISCSVEPPRITLR-PVRQTVKPGDIANIRCSAIGATPI-SIRWQ-PLQGYFPSHVVEY 460
           A ++   +P  +T+     Q+V+PG      C+A   +P  ++ W     G  PS  +++
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60

Query: 461 NGELRL 466
           NG L +
Sbjct: 61  NGILTI 66

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 81.9 bits (202), Expect = 4e-18
 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 23/201 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             + + P   +     D   ++C    G  SP     +  ++           +      
Sbjct: 8   AVVFLEPQWYRVL-EKDSVTLKCQ---GAYSPEDQSTQWFHNESLIS-----SQASSYFI 58

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
           +     D G+Y C  + S   +     + V     +   P      +  +P+ L C +  
Sbjct: 59  DAATVDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWK 114

Query: 301 RPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT---EEK 356
                 V++++          R      + + I      D+G Y C G   +     E  
Sbjct: 115 NTALHKVTYLQ------NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETV 168

Query: 357 VITVAVEHRPEYGPISPRPGA 377
            IT+              PG 
Sbjct: 169 QITITQGLAVSTISSFFPPGY 189

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 31/166 (18%)

Query: 39  FVSAENHEVTVYEGGDAELKCNTY--YAPGRWMWLNFYSFL-----SLII---------- 81
            V  E     V E     LKC            W +  S +     S  I          
Sbjct: 9   VVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGE 68

Query: 82  -ICLAYLSPQANEVQVT----PRQQSAP-----EGSQVTIEC--KSNDPSATIKWSKDNQ 129
             C   LS  ++ VQ+          AP     E   + + C    N     + + ++ +
Sbjct: 69  YRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128

Query: 130 EQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
            +   +        I   T  D G Y C       NV  +   I +
Sbjct: 129 GRKYFH--HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 61/175 (34%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
             V + P     V   + +TL+C+    P   +  W       + +L     +  + Y I
Sbjct: 8   AVVFLEPQW-YRVLEKDSVTLKCQGAYSPEDQSTQWFH-----NESLIS---SQASSYFI 58

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
            +    D+G+Y+C  + S  ++                                      
Sbjct: 59  DAATVDDSGEYRCQTQLSTLSD-------------------------------------- 80

Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSA-IGATPISIRW 446
                        +   V    + L+  R   K  D  ++RC +        + +
Sbjct: 81  ------------PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY 123

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSR 327
           +  +  +   E   V PG+ L L C        +++W++    +A  +R  +  +E+   
Sbjct: 2   SSGSSGVEV-ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVE-- 57

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
               +     +D+G Y C+  + +G++    +V V      GP S
Sbjct: 58  ----VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITK 149
              V         G  + + C+  D   +I W +D   QL  +    I GE + +     
Sbjct: 5   SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGV-QLAESNRTRITGEEVEVQDSVP 63

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
           AD G+Y C   +  G+    Y S+ V
Sbjct: 64  ADSGLYACVTSSPSGSD-TTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
                +    S     GD   ++C     +   +  W+R  +  +             + 
Sbjct: 3   SGSSGVEVE-SFLVHPGDLLQLRC--RLRDDVQSINWLR--DGVQLAESNRTRITGEEVE 57

Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
             +    D G Y C+  + +G +     ++V     
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVY 330
           L    +T S  + ++ G    LE +  G P PT +W      A     L  D  +S    
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
              S + +D+G YK   KN  G +E +  V V+
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VL 238
           P+I            G   +++     G P PT TW   D+     P++ V  +     +
Sbjct: 3   PKILTASR-KIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            F +    D G Y    +N  G++     + V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGE---TLIIN 145
           +    R+     G    +E      P  T  W+  +           + A     ++   
Sbjct: 5   ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG-AALAPELLVDAKSSTTSIFFP 63

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV 175
              +AD G Y   ++N  G   +D A  +V
Sbjct: 64  SAKRADSGNYKLKVKNELG---EDEAIFEV 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
             + + P+    + PG  L L+C A G P+P   W K     +  L  +   ++ +Y + 
Sbjct: 4   LQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFKN----ELPLTHE---TKKLYMVP 55

Query: 334 SVRESDAGQYKCIGKNSAGTEE-KVITVAVE 363
            V     G Y C   N   +++ K + + ++
Sbjct: 56  YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
           ++ V P  Q    GS + ++C     P    +W K+    L       +  ++  +    
Sbjct: 5   QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-LTHE--TKKLYMVPYVDLEH 61

Query: 152 EGVYICSIQNAQGNVFQDYASIQVD 176
           +G Y C + N + +       I +D
Sbjct: 62  QGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
            +I + P  SQ  + G    +QCV   G P P   W +  N+     + +      +   
Sbjct: 4   LQICVEP-TSQKLMPGSTLVLQCVAV-GSPIPHYQWFK--NELPLTHETK-----KLYMV 54

Query: 241 NNIATGDEGKYTCIAENSAG 260
             +    +G Y C   N   
Sbjct: 55  PYVDLEHQGTYWCHVYNDRD 74

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQG 451
             +I + P  Q + PG    ++C A+G+     +W     PL  
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH 46

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPSEY---VSVRPGEPLTLECEATGRPMPTVSWVKY 311
           +  S+G       I  +  P     P         + GE L L     G+P P V W K 
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK- 60

Query: 312 IAPFDRNLERDELTSR-----AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
                  L+   +  R      V+ +     SD+G+Y+   +     +   I + V  + 
Sbjct: 61  ---GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 176 DKREMPRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VE 230
           +  E P+IR+  +  QT+I   G++ ++    + G+P P   W +             V 
Sbjct: 17  EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTK--GGAPLDTSRVHVR 73

Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
                 V      A  D G+Y    +    K+     I V+   
Sbjct: 74  TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 20/103 (19%)

Query: 90  QANEVQVTPR---------QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAG 139
              E+   P+               G Q+ +       P   + W+K     L  + +  
Sbjct: 14  TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP-LDTSRVHV 72

Query: 140 ET------LIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
            T        +    ++D G Y  S+Q       +D A+I++ 
Sbjct: 73  RTSDFDTVFFVRQAARSDSGEYELSVQIENM---KDTATIRIR 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 75.5 bits (185), Expect = 8e-17
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA------------PFDRNL 319
            +  V ++PS  + +  GE L L C A       + +                       
Sbjct: 6   RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
             +     +  TI  V  SD G Y C   +   T++    V V  +P
Sbjct: 66  GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG------------ 226
            +  + + P+      VG++  + C     E +    +       K              
Sbjct: 6   RIYDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 64

Query: 227 PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
              E+ + L  L  + +   D+G YTC A +    +  + ++ V   P V     
Sbjct: 65  SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG 119

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 93  EVQVTP-RQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMI----------- 137
           +V ++P        G ++ + C      +      W   + +     ++           
Sbjct: 9   DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68

Query: 138 ---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
                 TL I+G+T++D+G+Y C+  +          S  V   E P +    
Sbjct: 69  MKKFLSTLTIDGVTRSDQGLYTCAASSGLMT---KKNSTFVRVHEKPFVAFGS 118

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
           P +   P +   VR GE + L  + TG    T +W+K    I   +   +E  E  S+  
Sbjct: 8   PQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK-- 64

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
            TI + R+   G Y  + +N  G+ +  + + V  +P+
Sbjct: 65  LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 177 KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVY 232
               P+I   P   Q    G+  ++   +  G    T TW++     +        VE  
Sbjct: 4   GSSGPQIIQFPE-DQKVRAGESVELFGKVT-GTQPITCTWMK--FRKQIQESEHMKVENS 59

Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
           +    L          G YT + EN  G       + V+  P
Sbjct: 60  ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE---TLIINGITK 149
           P  Q    G  V +  K +     T  W K  ++ +  +    +   E    L I    +
Sbjct: 14  PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQ 72

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
              G Y   ++N  G      A + +
Sbjct: 73  EHCGCYTLLVENKLG---SRQAQVNL 95

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P IR  P  +QT  V     + CV   G P PT  W +               E GVL+ 
Sbjct: 9   PVIRQGP-VNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY-VSVRPGEP 291
                GD G+YTCIA   +G+   +AYI V         P     ++ P  P
Sbjct: 67  RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAP 118

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P +   P    +V       L C ATG P+PT+ W K          R +     V  I 
Sbjct: 9   PVIRQGPVN-QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
             +  D G+Y CI    +G       + V+         PRP
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV-PVQPPRP 108

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
            ++  P  Q+        + C +   P  TI W KD       +     +    L I   
Sbjct: 10  VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYA 69

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQ 191
              D G Y C      G      A I+V  +E       P  + 
Sbjct: 70  KLGDTGRYTCIASTPSGEATWS-AYIEV--QEFGVPVQPPRPTD 110

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
           S  PP I   PV QTV       + C A G+   +I W      +           NG L
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64

Query: 465 R 465
           +
Sbjct: 65  Q 65

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P +   P+   ++       L+C+ATG P+P +SW+K    F     R  +  +    I 
Sbjct: 9   PIILQGPAN-QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           ++R SD G Y C+  +S+G       + V 
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVL 238
           P I   P A+QT  V   A ++C    G+P P  +W++      F            G L
Sbjct: 9   PIILQGP-ANQTLAVDGTALLKCKAT-GDPLPVISWLK--EGFTFPGRDPRATIQEQGTL 64

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
           +  N+   D G YTC+A +S+G+   +A + V 
Sbjct: 65  QIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIING 146
            +   P  Q+        ++CK+  DP   I W K+     P       +    TL I  
Sbjct: 10  IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT-FPGRDPRATIQEQGTLQIKN 68

Query: 147 ITKADEGVYICSIQNAQGNV 166
           +  +D G Y C   ++ G  
Sbjct: 69  LRISDTGTYTCVATSSSGET 88

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ----PLQGYFPSHVVEYNGELR 465
            PP I   P  QT+     A ++C A G     I W        G  P   ++  G L+
Sbjct: 7   GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAV 329
            L    + + P    +V PG  +TL CE   +P P + W+K       +     L    V
Sbjct: 7   GLEEVQLVVEPEG-GAVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPV 58

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEE--KVITVAV 362
             +  +   D G Y C+  +S+   +  + +++++
Sbjct: 59  LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
           E  ++ + P        G    + C +   +PSP   W++        P         VL
Sbjct: 9   EEVQLVVEPE-GGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPS-------PVL 59

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
               I   D+G Y+C+A +S+     +  + +
Sbjct: 60  ILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE-QLPPNMIAGETLIINGITKA 150
           ++ V P   +   G  VT+ C+    PS  I W KD     LPP+      LI+  I   
Sbjct: 12  QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----PVLILPEIGPQ 67

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKRE 179
           D+G Y C   ++     Q+  ++ +   E
Sbjct: 68  DQGTYSCVATHSSHGP-QESRAVSISIIE 95

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
           +S S  +E  ++ + P    V PG    + C         I W 
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWM 45

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 76.2 bits (187), Expect = 5e-16
 Identities = 41/224 (18%), Positives = 62/224 (27%), Gaps = 41/224 (18%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSA-----TIKWSKDNQ----------------- 129
            V V         GS +TIECK   +         + W  +++                 
Sbjct: 3   TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62

Query: 130 ------EQLPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPR 182
                   L   +  G   L I  +   D GVY C I    G       +++V     P 
Sbjct: 63  SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKV---NAPY 117

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN- 241
            +I+        V    ++ C  E G P     W   D+    G       +     FN 
Sbjct: 118 NKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176

Query: 242 ----NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
                I T     + C       +E   A + +  LP       
Sbjct: 177 TSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 30/213 (14%), Positives = 53/213 (24%), Gaps = 31/213 (14%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDN------DGKFGPDVEVYQELG 236
           P        G    I+C     +          W   D        G+    V+      
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 237 --------------VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
                          L+  ++   D G Y C+  +  G +     + V   P   I    
Sbjct: 67  RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNA-PYNKINQRI 124

Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIAS---VRE 337
            V         L C+A G P   V W          +    +      ++ + S   +  
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT 184

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
           +    + C  +     E     + +   P   P
Sbjct: 185 TTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 41/195 (21%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMP-----TVSWVK-------YIAPFDR-------- 317
             P +   V  G  +T+EC+             V W         ++   +         
Sbjct: 5   TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSY 64

Query: 318 ----NLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
                L +D+L+       I  V+  DAG Y+C+     G + K ITV V + P      
Sbjct: 65  RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-NAPYNKINQ 122

Query: 373 PRPGADILPDGDE-------YYRPE----PEEGEYVYAVGSNASISCSVEPPRITLRPVR 421
                D +    E       Y + E      + + +    +  +     +   +T     
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL-- 180

Query: 422 QTVKPGDIANIRCSA 436
             +         C+ 
Sbjct: 181 -RINTTTNEIFYCTF 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 30/196 (15%), Positives = 44/196 (22%), Gaps = 35/196 (17%)

Query: 105 EGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG 164
           E   V + C  +  +  I W KD +  +       +   +    K   G+Y C     + 
Sbjct: 17  EDGSVLLTC--DAEAKNITWFKDGKM-IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73

Query: 165 NVFQDY-----------------------ASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
              Q Y                       A             I     +  I G    +
Sbjct: 74  KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVIL 133

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIA-TGDEGKYTCIAENSA 259
            C      P     W   D +     D +        L     +     G Y C    S 
Sbjct: 134 TCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190

Query: 260 GKEVMNAYIHVLTLPA 275
                      L L A
Sbjct: 191 P----EDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 66.8 bits (162), Expect = 5e-13
 Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 39/193 (20%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
           +   + D   +L     +   TW +   DGK      + ++       + A    G Y C
Sbjct: 12  VYDYQEDGSVLLTCDAEAKNITWFK---DGK--MIGFLTEDKKKWNLGSNAKDPRGMYQC 66

Query: 254 IAENSAGKEVMNAYI--------------------------HVLTLPAVTITPSEYVSVR 287
               +  K +   Y                                    IT + Y    
Sbjct: 67  KGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSI 126

Query: 288 PGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRE-SDAGQY 343
            G  + L C     P   + W      I   +   +++  +     ++    E   +G Y
Sbjct: 127 SGTTVILTCPQY--PGSEILWQHNDKNIGGDED--DKNIGSDEDHLSLKEFSELEQSGYY 182

Query: 344 KCIGKNSAGTEEK 356
            C  + S   +  
Sbjct: 183 VCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCI 346
           +    + L C+A       ++W K     D  +       +  + + S  +   G Y+C 
Sbjct: 16  QEDGSVLLTCDA---EAKNITWFK-----DGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67

Query: 347 GKNSAGTEEKV---ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAV--- 400
           G  +     +V   +  A + + +          D   DG +         +  Y V   
Sbjct: 68  GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127

Query: 401 GSNASISCSVEPP 413
           G+   ++C   P 
Sbjct: 128 GTTVILTCPQYPG 140

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
             +   P   ++V  GE     C+  G P+PTV+W++    ++      +      ++ +
Sbjct: 15  ARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-SARHQVTTTKYKSTF 72

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            I+SV+ SD G Y  + +NS G +E   T+ ++
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
            RI   P  S T   G+ A   C  + GEP PT TW+R           +V         
Sbjct: 15  ARILTKPR-SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
             +++   DEG Y+ + ENS GK+     + +
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLII 144
            +   PR  +  EG      C ++ +P  T+ W +  Q  L  +            T  I
Sbjct: 16  RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV-LSTSARHQVTTTKYKSTFEI 74

Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
           + +  +DEG Y   ++N++G   +   ++ + K
Sbjct: 75  SSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQK 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P     P + ++V+ G+   ++C+ +G P P +SW      + P   +            
Sbjct: 10  PHFLQAPGD-LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
            I  V   DAG Y CI  N AG     + + V  +  
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           P     P    T   G    + C +  G P+P  +W      +RPD+  K      + +E
Sbjct: 10  PHFLQAP-GDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKM-----LVRE 62

Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            GV  L    + + D G YTCIA N AG+   +  + V    +
Sbjct: 63  NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
             P   +  EG    ++CK S  P+  + W  D +  + P+    M+  E    +LII  
Sbjct: 14  QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP-VRPDSAHKMLVRENGVHSLIIEP 72

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
           +T  D G+Y C   N  G        + V  +E  
Sbjct: 73  VTSRDAGIYTCIATNRAGQN-SFSLELVVAAKESG 106

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE---- 323
           +     P +T       +   GE + + C A+G P P + W K     +  L  D     
Sbjct: 5   VLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFK----DNETLVEDSGIVL 59

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
                  TI  VR+ D G Y C   +  G  +      +E   E
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY 232
           + V +R  P I  +   +QT  +G+  ++ C    G P P   W + +        + + 
Sbjct: 3   LTVLERVAPTITGNL-ENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK 60

Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
                L    +   DEG YTC A +  G   + A+  +      T
Sbjct: 61  DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE-TLIINGITKAD 151
              Q+   G  + + C  S +P   I W KDN+  L  +    +  G   L I  + K D
Sbjct: 17  LENQTTSIGESIEVSCTASGNPPPQIMWFKDNET-LVEDSGIVLKDGNRNLTIRRVRKED 75

Query: 152 EGVYICSIQNAQGNVFQDYASIQVD 176
           EG+Y C   +  G   +  A   ++
Sbjct: 76  EGLYTCQACSVLGCA-KVEAFFIIE 99

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 70.2 bits (172), Expect = 3e-15
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
           P       E + V PG+ L L C        +++W++    +   +R  +  +E+     
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVE---- 63

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
             +     +D+G Y C+  + +G++    +V V
Sbjct: 64  --VRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKA 150
           V V         G  + + C+  D   +I W +D   QL  +    I GE + +     A
Sbjct: 12  VPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDG-VQLVESNRTRITGEEVEVRDSIPA 70

Query: 151 DEGVYICSIQNAQGNVFQDYASIQV 175
           D G+Y C   +  G+    Y S+ V
Sbjct: 71  DSGLYACVTSSPSGSD-TTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             + +    S     GD   ++C     +   +  W+R  +  +             +  
Sbjct: 10  WGVPVEVE-SLLVHPGDLLQLRC--RLRDDVQSINWLR--DGVQLVESNRTRITGEEVEV 64

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            +    D G Y C+  + +G +     ++V
Sbjct: 65  RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 71.4 bits (175), Expect = 6e-15
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 8/147 (5%)

Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS-----EYVSVRPGEPLTLECEA 298
                G       N+   E  +A++  +      + P        + V  G     +C+ 
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 299 TGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
            G P P V W K    +          +       TI+ V   D  +Y C   NS G   
Sbjct: 66  EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125

Query: 356 KVITVAVEHRPEYGPISPRPGADILPD 382
               + VE   + G        D   +
Sbjct: 126 CTAELLVETMGKEGEGEGEGEEDEEEE 152

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 6/152 (3%)

Query: 144 INGITKADEGVYICSIQNAQGNVFQDY-ASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
           ++G   +          N   N         +      P            + G  A   
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI-LDMEVVEGSAARFD 62

Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTCIAENSA 259
           C +E G P P   W + DN  K     ++  +      L  + +   D+ KYTC A NS 
Sbjct: 63  CKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121

Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
           G+    A + V T+        E       E 
Sbjct: 122 GEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE-------QLPPNMIAGETLIINGI 147
            T       EGS    +CK    P   + W KD+         Q+  +     +L I+ +
Sbjct: 46  KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105

Query: 148 TKADEGVYICSIQNAQGNV 166
              D+  Y C   N+ G  
Sbjct: 106 CGDDDAKYTCKAVNSLGEA 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 6e-15
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEVYQE 234
             P I   P A      G  A+++C   A     + +WI P+      G +   + V  +
Sbjct: 340 YAPVIVEPP-ADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD 396

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
            G L F N+   D G YTC+  NS G    +A ++V    
Sbjct: 397 -GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 4e-13
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 241 NNIATGDEGKYTCIA-ENSAGKEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEA 298
           +   +       C    N  G+ +     +  T    V + P   ++V  G    L+C A
Sbjct: 306 DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA 365

Query: 299 TGRPMPTVSWVKYIAPFDRNLERDELTSRA-VY-----TIASVRESDAGQYKCIGKNSAG 352
           +   + +VSW+    P    +       R  V         +V   D G Y C+  NS G
Sbjct: 366 ST-SLTSVSWIT---PNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVG 421

Query: 353 TEEKVITVAV 362
                 T+ V
Sbjct: 422 NTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%)

Query: 67  RWMWLNFYSFLSLIIIC----------LAYLSP-----QANEVQVTPRQQSAPEGSQVTI 111
            W+     S  +    C          +  L        A  +   P   +  EG    +
Sbjct: 302 WWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAEL 361

Query: 112 ECKSNDPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQG 164
           +C+++    ++ W   N   +               TL    +T  D G+Y C + N+ G
Sbjct: 362 KCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVG 421

Query: 165 NVFQDYASIQVDKREMPRIRIH 186
           N     AS  ++         H
Sbjct: 422 N---TTASATLNVTGTHHHHHH 440

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 69.4 bits (170), Expect = 6e-15
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 285 SVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY----TIASVRE 337
           S        +     G P P + W      +        +  +T+   Y     + +   
Sbjct: 12  SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
            + G Y  I KN  G +EK I+      P
Sbjct: 72  MNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           P I    +            I   ++ G P P   W      +           V  + E
Sbjct: 5   PTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 235 L-GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
             G L+ +N    + G YT IA+N  GK+      H +  P +
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 18/105 (17%)

Query: 94  VQVTPR---QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
           V   P     +S        I      +P   ++W  +         I  +         
Sbjct: 1   VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 141 --TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRI 183
              L ++  T  + G Y    +N  G   +D   I       P I
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHFMGWPGI 102

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 69.3 bits (170), Expect = 7e-15
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P     P   +S+  G    ++ + +G P P VSW      +   D +            
Sbjct: 6   PRFIQVPEN-MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
               VR SDAG Y C+ KN AG     + + V  +
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 97  TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIINGI 147
            P   S  EG    ++ K S  P+  + W  + +  +  +    MI  E    +LI   +
Sbjct: 11  VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT-VQSDDLHKMIVSEKGLHSLIFEVV 69

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
             +D G Y C  +N  G        + V  +E
Sbjct: 70  RASDAGAYACVAKNRAGEA-TFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           PR    P  + +   G    +   +  G P+P  +W      ++ D+  K      +  E
Sbjct: 6   PRFIQVP-ENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKM-----IVSE 58

Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
            G+  L F  +   D G Y C+A+N AG+      + VL
Sbjct: 59  KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLERDELTSRAV 329
           P     P     V  G+ + LEC+ +  P P + W +         DR     + T R  
Sbjct: 16  PMFIYKPQS-KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
             I  V + DAG Y     N AG       + V  RP 
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP 227
             +     + +  P     P  S+  + GD   ++C +    P P   W R +   +F  
Sbjct: 3   HHHHHHSHEHKRAPMFIYKP-QSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNT 60

Query: 228 D----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI 278
           D     +       L   ++   D G YT  A N AG    N  + V   P  T+
Sbjct: 61  DRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
             P+ +   EG  V +EC+ +  P   + W ++N+          L  +     TL+I  
Sbjct: 20  YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79

Query: 147 ITKADEGVYICSIQNAQGNV 166
           + K D G Y  S  N  G  
Sbjct: 80  VNKKDAGWYTVSAVNEAGVT 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDA 340
            +V     +   C A G PMPT+ W+K         R              + SV  SD 
Sbjct: 18  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77

Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G Y C+ +N  G+      + V
Sbjct: 78  GNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIA 244
                  +    +C    G P PT  W++  N  +F  +      +V  +   L   ++ 
Sbjct: 17  LHAVPAANTVKFRCPAG-GNPMPTMRWLK--NGKEFKQEHRIGGYKVRNQHWSLIMESVV 73

Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVL 271
             D+G YTC+ EN  G      ++ V+
Sbjct: 74  PSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 57.5 bits (139), Expect = 9e-11
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 92  NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C +  +P  T++W K+ +E    + I G        +LI
Sbjct: 9   NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
           +  +  +D+G Y C ++N  G++     +  +D
Sbjct: 69  MESVVPSDKGNYTCVVENEYGSI---NHTYHLD 98

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 7e-14
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 9/96 (9%)

Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY-----TIAS 334
                    G+ LT+ C+   + M  V       P +  +                    
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVS----PSNEQVLSQGSNGSVSVRNGDLFFKK 307

Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
           V+  D G Y C        E   + + V +   +G 
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGD 247
           +    +GD   I+C  +  +    + W+ P N+            +  G L F  +   D
Sbjct: 255 AWEAHLGDTLTIRCDTK-QQGMT-KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312

Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
            G YTC A      E ++  + V          +   +  P      E
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQFE 360

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 97  TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKA 150
                 A  G  +TI C +       +  S  N++ L         +    L    +   
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 151 DEGVYICSIQNAQGNVFQDYASIQV 175
           D GVY C       N       ++V
Sbjct: 312 DGGVYTCYAMGETFNETL-SVELKV 335

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 68.8 bits (168), Expect = 7e-14
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 23/179 (12%)

Query: 194 IVGDRADIQC-VLEAGEPSPTQTWIRPD-------NDGKFGPDVEVYQEL--GVLRFNNI 243
            +G   ++     +  +      W R            K       ++ L  G L+  N+
Sbjct: 9   ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 68

Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM 303
              D G Y     ++ G  ++N  + +  L  V+  P  Y         TL CE      
Sbjct: 69  TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-KPMIYWE---CSNATLTCEVLEGTD 124

Query: 304 PTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
             +   +          ++ L S    T++    +    +KC   N    E ++  V  
Sbjct: 125 VELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 35/178 (19%)

Query: 102 SAPEGSQVTIEC---KSNDPSATIKWSKDNQE------QLPPNMIAGE-------TLIIN 145
               G  + +     +  D    ++W + +        ++ P + +G         L I 
Sbjct: 7   WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCV 204
            +T+ D G Y  ++ +  G    +  ++ +     + +  I+   S          + C 
Sbjct: 67  NLTRDDSGTYNVTVYSTNGTRILN-KALDLRILEMVSKPMIYWECSNAT-------LTCE 118

Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
           +  G         +     +        + L     +   T     + C A N   +E
Sbjct: 119 VLEG-TDVELKLYQ---GKE------HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQE 166

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 38/162 (23%)

Query: 281 SEYVSVRPGEPLTLEC--EATGRPMPTVSWVK---YIAPFDRNLERDELTSR-AVY---- 330
           S  V    G  + L          +  V W +    +A F R ++    +    +     
Sbjct: 3   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62

Query: 331 -TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
             I ++   D+G Y     ++ GT      + +                           
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM--------------------VS 102

Query: 390 EPEEGEYVYAVGSNASISCSVE---PPRITLRPVRQTVKPGD 428
           +P     +Y   SNA+++C V       + L   ++ ++   
Sbjct: 103 KPM----IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 140

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 67.2 bits (164), Expect = 7e-14
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK-----YIA 313
           G    +  + V   P ++ T +++     GE   ++C     P P  ++W          
Sbjct: 1   GSSGSSGTLTVNGPPIISSTQTQHALH--GEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58

Query: 314 PFDRNLERDELTSRAVY---TIASVRESD-AGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
              R       T   V    TI+++  +D    Y C   NS G++ ++I +  +     G
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118

Query: 370 PIS 372
           P S
Sbjct: 119 PSS 121

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE--L 235
            I    +Q  + G++  I+C + +  P     W      +     G++  +    +E  +
Sbjct: 16  IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75

Query: 236 GVLRFNNIATGDEG-KYTCIAENSAGKEVMNAYIHV 270
             L  +NI   D    Y C A NS G +     +  
Sbjct: 76  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 18/99 (18%)

Query: 98  PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQ------------EQLPPNMIAGETLI 143
            + Q A  G +  I+C   S  P   I WS                E +        TL 
Sbjct: 20  TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLT 79

Query: 144 INGITKADEG-VYICSIQNAQGNVFQDYASIQVDKREMP 181
           I+ I +AD   +Y C+  N+ G    D   I++ ++   
Sbjct: 80  ISNIVRADFQTIYNCTAWNSFG---SDTEIIRLKEQGSE 115

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSR 327
           +   P+ +    +  +V  G+   L+C   G P+P ++W+       + R+     +   
Sbjct: 8   MEVAPSFSSVLKD-CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE- 65

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEE 355
               I      D G Y C+ +N+ G   
Sbjct: 66  --LHIQDALPEDHGTYTCLAENALGQVS 91

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
           +S        P            I G    +QC +  G P P  TW+    +G+      
Sbjct: 2   SSGSSGMEVAPSFSSVL-KDCAVIEGQDFVLQCSVR-GTPVPRITWLL---NGQPIQYAR 56

Query: 231 VYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
              E GV  L   +    D G YTC+AEN+ G+   +A++ V
Sbjct: 57  STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----TLIINGITKA 150
              +  +  EG    ++C     P   I W  + Q  +       E     L I      
Sbjct: 16  SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP-IQYARSTCEAGVAELHIQDALPE 74

Query: 151 DEGVYICSIQNAQGNV 166
           D G Y C  +NA G V
Sbjct: 75  DHGTYTCLAENALGQV 90

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN------LERDELTSRAVY 330
            +   E   +R      +E    G P PT+ W+    P   +        ++   S    
Sbjct: 10  RVVSLEEPELR--LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 67

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP----EYGPISPRP 375
                   + G Y  I KN  GT  + I       P    E  P  P  
Sbjct: 68  LFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 29/120 (24%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
           PR+           +     I+ V+  G P PT  W      +R           E    
Sbjct: 9   PRVVSLEEP----ELRLEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
            G L FN     + G YT IA+N  G        H L  P      S      P  P+T+
Sbjct: 64  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS------PTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 93  EVQVTPRQQSAPEGSQV---TIECK-SNDPSATIKWSKDNQE----------QLPPNMIA 138
            V   PR  S  E        IE     +P  T+ W  + Q                 I+
Sbjct: 4   TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
              L+ N  T  + G Y    +N  G       +I     + P      +
Sbjct: 64  EGCLLFNKPTHYNNGNYTLIAKNPLG---TANQTINGHFLKEPFPVDEVS 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELG 236
           P I   P        G  A+++C      P  +  W+ P+    +     P + V  + G
Sbjct: 353 PFIMDAPR-DLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND-G 407

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
            L F+++   D G YTC+  N AG    +AY++V T    T     +
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG--THHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 13/134 (9%)

Query: 241 NNIATGDEGKYTCIA-ENSAGKEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEA 298
             I T       C A  +  G+ ++              +     +++  G    L+C  
Sbjct: 317 EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT 376

Query: 299 TGRPMPTVSWVKYIAPFDRNLERDELTSRAVY------TIASVRESDAGQYKCIGKNSAG 352
              PM +V W+    P    L       R           + V  SD G Y C+  N AG
Sbjct: 377 P--PMSSVKWLL---PNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAG 431

Query: 353 TEEKVITVAVEHRP 366
                  + V    
Sbjct: 432 NSNASAYLNVSTAG 445

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 24/132 (18%)

Query: 67  RWMWLNFYSFLSLIIIC----------LAYLSP-----QANEVQVTPRQQSAPEGSQVTI 111
            W+     +  +    C          L  +        A  +   PR  +  EG    +
Sbjct: 313 WWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAEL 372

Query: 112 ECKSNDPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQG 164
           +C++  P +++KW   N   L               TL  + +  +D GVY C + N  G
Sbjct: 373 KCRT-PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAG 431

Query: 165 NVFQDYASIQVD 176
           N     A + V 
Sbjct: 432 NSNA-SAYLNVS 442

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
           LR +N+   D GKY C  ++    E        L + A+       V       + LEC 
Sbjct: 85  LRIHNVTASDSGKYLCYFQDGDFYEKAL---VELKVAALGSDLHVDVKGYKDGGIHLECR 141

Query: 298 ATG-RPMPTVSWVKY----IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
           +TG  P P + W       I   +  +  D +   AV     +R S      C  ++S  
Sbjct: 142 STGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL 201

Query: 353 TEEKVITVAV 362
             EK  ++++
Sbjct: 202 GLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 46/216 (21%)

Query: 93  EVQVTPRQQS--APEGSQVTIEC----KSNDPSATIKWSKDNQEQ--------------- 131
           +  V        A  G    + C      +  +  +KW   +  Q               
Sbjct: 4   QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQ 63

Query: 132 ----------LPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
                     L   + AG+  L I+ +T +D G Y+C  Q+     F + A +++    +
Sbjct: 64  SAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGD---FYEKALVELKVAAL 120

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
                  +            ++C      P P   W   +N G+  P VE       +  
Sbjct: 121 GS---DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS--NNKGENIPTVEAPVVADGVGL 175

Query: 241 NNIAT------GDEGKYTCIAENSAGKEVMNAYIHV 270
             +A             +C   +S       A I +
Sbjct: 176 YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 27/124 (21%)

Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVK--------------------YIA 313
           + PS  +    GE   L C      +   M  + WV                        
Sbjct: 8   LGPSGPILAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAP 66

Query: 314 PFDR-NLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
              R ++ RD +T+      I +V  SD+G+Y C  ++    E+ ++ + V        +
Sbjct: 67  YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV 126

Query: 372 SPRP 375
             + 
Sbjct: 127 DVKG 130

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELT 325
           + + P +     +  +V          +ATG P PT  W K    I    +  L  D+  
Sbjct: 3   ISSKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK-- 59

Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
                 I     SD+G Y C  KNSAG+      + ++
Sbjct: 60  GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV- 237
             P I        T      A        GEP PT  W +       G   ++ ++ G  
Sbjct: 5   SKPVIVTGLQ-DTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            L  +   T D G YTC  +NSAG    +  + +
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 97  TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE---TLIINGIT 148
             +  +    S      K + +P  T  W+KD +  +       +   +    L I+   
Sbjct: 12  GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA-ITQGGKYKLSEDKGGFFLEIHKTD 70

Query: 149 KADEGVYICSIQNAQGNV 166
            +D G+Y C+++N+ G+V
Sbjct: 71  TSDSGLYTCTVKNSAGSV 88

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P   ++  +  SVR G+ + +     G P P VSW++    + P  R    +        
Sbjct: 6   PTFKVSLMD-QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            I +    DAG Y C   N  G  +    + V 
Sbjct: 65  RILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
           V+   QS  EG  V +  +   +P   + W ++ Q  + P+        E     L I  
Sbjct: 10  VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP-VRPDQRRFAEEAEGGLCRLRILA 68

Query: 147 ITKADEGVYICSIQNAQGNV 166
             + D G Y C   N  G  
Sbjct: 69  AERGDAGFYTCKAVNEYGAR 88

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VEVYQELGV 237
           P  ++     Q+   G    +   ++ GEP P  +W+R  N     PD        E G+
Sbjct: 6   PTFKVSLM-DQSVREGQDVIMSIRVQ-GEPKPVVSWLR--NRQPVRPDQRRFAEEAEGGL 61

Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
             LR      GD G YTC A N  G     A + V
Sbjct: 62  CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 67.5 bits (164), Expect = 5e-13
 Identities = 28/211 (13%), Positives = 56/211 (26%), Gaps = 45/211 (21%)

Query: 93  EVQVT-PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
           EV+++ P       G  V ++C          ++W   ++    P + + E         
Sbjct: 1   EVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVT 60

Query: 141 -----------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPR 182
                             L++      DE  Y+C ++       +  A + V  + E   
Sbjct: 61  MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV----------- 231
           +  +           +    C    G P+P  TW R     +   ++             
Sbjct: 121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE 180

Query: 232 ----YQELGVLRFNNIATGDEGKYTCIAENS 258
                     L         +  + C A  S
Sbjct: 181 ASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 61.7 bits (149), Expect = 4e-11
 Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 42/206 (20%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG---------KFGPDVEVYQ 233
           +R+        + G    + C            W   D  G           G +++V  
Sbjct: 2   VRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61

Query: 234 ELGV-------------LRFNNIATGDEGKYTCIAE-NSAGKEVMNAYIHVL---TLPAV 276
                            L       GDE  Y C+    +AG     A ++V        V
Sbjct: 62  HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121

Query: 277 TITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDE------------ 323
           +        +         C +  G P P ++W +     +  +E +             
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREA 181

Query: 324 ---LTSRAVYTIASVRESDAGQYKCI 346
              L+  +   +   ++     + C 
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCA 207

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 24/125 (19%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAP-------------------- 314
           V ++    V V  G+ + L+C  TG      + W                          
Sbjct: 2   VRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61

Query: 315 --FDRNLERDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYGPI 371
                     +L S+    +A  +  D   Y C +   +AGT E    + V  +PE   +
Sbjct: 62  HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121

Query: 372 SPRPG 376
           SP  G
Sbjct: 122 SPNKG 126

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
            S++ +    PRI  HP+       G+ A + C  E G P+PT  W +     +   D  
Sbjct: 1   GSLRQEDF-PPRIVEHPS-DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDP 57

Query: 231 VYQEL----GVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLP 274
               +    G L F  I  G     DEG Y C+A N  G+ V  +A + V    
Sbjct: 58  RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
           P +   PS+ + V  GEP TL C+A GRP PT+ W K          D    R  L S +
Sbjct: 10  PRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 329 VY----TIASVRESDAGQYKCIGKNSAGT 353
           ++            D G Y C+ +N  G 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE---------TLIIN 145
             P      +G   T+ CK+   P+ TI+W K  +  +  +              +L   
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER-VETDKDDPRSHRMLLPSGSLFFL 72

Query: 146 GI-----TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH 186
            I     ++ DEGVY+C  +N  G      AS++V          H
Sbjct: 73  RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV--AAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
            S+     PPRI   P    V  G+ A + C A G    +I W 
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 65.8 bits (160), Expect = 9e-13
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 33/192 (17%)

Query: 94  VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL---------PPNMIAGE-- 140
           + +TP   +   G  VT+  +  + +    I W  +              P   +     
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60

Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS 190
                     +L ++ +   D G Y   I          Y    + +    ++  H    
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLF 120

Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK 250
           Q   +     + C +E  + + +  W    N     P++ V          +     E  
Sbjct: 121 QN--MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS--------WDPRISSEQD 170

Query: 251 YTCIAENSAGKE 262
           YTCIAEN+    
Sbjct: 171 YTCIAENAVSNL 182

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN------------------DGKFGPDVEVYQEL 235
           I+G+   +     AGE     TW+  +                   + K G  +   Q  
Sbjct: 11  ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS- 69

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL-TLPAVTITPSEYVSVRPGEPLTL 294
             L+ +N+   D G Y          ++ +  + +L  L  + +T    +       L L
Sbjct: 70  YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHL 129

Query: 295 ECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
            C         +  W                +   +      R S    Y CI +N+   
Sbjct: 130 TCSVEDADDNVSFRWEALGNTL--------SSQPNLTVSWDPRISSEQDYTCIAENAVSN 181

Query: 354 EEKVITVAV 362
               ++   
Sbjct: 182 LSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 38/157 (24%)

Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK-----------------YIAPFDR 317
           +++TP   V+   GE +TL  E   G  +  ++W+                        +
Sbjct: 1   MSLTPLM-VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPK 59

Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
             +R   T      +++++  D G Y+         +    T+ +  +     ++     
Sbjct: 60  QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-- 117

Query: 378 DILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR 414
                         +             ++CSVE   
Sbjct: 118 -----------QLFQNM------TCELHLTCSVEDAD 137

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 43/271 (15%), Positives = 77/271 (28%), Gaps = 36/271 (13%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLP--PNMIAGETLIINGITKADEGVYICSIQN 161
           P G  VT+ C            K+++  +P     I  E+  ++ +T A  G Y C   +
Sbjct: 36  PRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSH 95

Query: 162 AQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCVLEA----------G 208
                     S  V         +  +  +       G+R  +QC  +           G
Sbjct: 96  PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEG 155

Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY- 267
                   +   +DG    +              +     G Y C    +     ++A  
Sbjct: 156 ISKDPSRLVGQIHDGVSKAN---------FSIGPMMLALAGTYRCYGSVTHTPYQLSAPS 206

Query: 268 ----IHV---LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-YIAPFDRNL 319
               I V      P+++  P     V+ GE +TL C +           +   A   R  
Sbjct: 207 DPLDIVVTGPYEKPSLSAQPGP--KVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLP 263

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
              ++             +  G Y+C G   
Sbjct: 264 AVRKVNRTFQADFPLGPATHGGTYRCFGSFR 294

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 25/219 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P +   P  S     G    ++C              +   D    P             
Sbjct: 25  PFLSAWP--SAVVPRGGHVTLRC--HYRHRFNNFMLYK--EDRIHIPIFHGRIFQESFNM 78

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSVRPGEPL 292
           + + T   G YTC   +       +A  + + +        P++   P   V    GE +
Sbjct: 79  SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK--SGERV 136

Query: 293 TLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
            L+C +           K      P     +  +  S+A ++I  +  + AG Y+C G  
Sbjct: 137 ILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSV 195

Query: 350 SAGTEE-----KVITVAVEHRPEYGPISPRPGADILPDG 383
           +    +       + + V    E   +S +PG  +    
Sbjct: 196 THTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGE 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
             +    ++ V V  G  +   C A G P P + W+    P  ++L   +   R      
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS---P-RKHLVSAKSNGRLTVFPD 440

Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
               +   +  D G Y CI  N+ G +     + V
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN---DGKFGPDVEVYQELGV 237
            RIR           G      C  + G+P P   W+ P       K    + V+ + G 
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GT 442

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
           L        D G Y CIA N+ G + M A++HV
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN------MIAGET 141
            +A       +Q    EG  V   C+   DP   I W    +  +         +    T
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           L +      D G Y+C   NA GN     A + V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSM-PAHLHV 475

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE----LTSRAV 329
           P +T+       V  G+          +P   V W          L+         +  V
Sbjct: 9   PRITLRMRS-HRVPCGQNTRFILNVQSKPTAEVKWYH----NGVELQESSKIHYTNTSGV 63

Query: 330 YT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
            T  I      D+G Y+ +  N  G      T+ V    +Y
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG-GDY 103

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
                 PRI +    S     G        ++  +P+    W     + +    +     
Sbjct: 3   FTLDHAPRITLRMR-SHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNT 60

Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            GV  L   +  T D G Y  +  N  G+    A + V
Sbjct: 61  SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE---- 140
             A  + +  R    P G          + P+A +KW  +  E L  +            
Sbjct: 6   DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE-LQESSKIHYTNTSGVL 64

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
           TL I      D G Y     N +G    DYA++ V   +
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEA-SDYATLDVTGGD 102

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 62.3 bits (151), Expect = 5e-12
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 21/129 (16%)

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
           G       +S+G            +      P        G  + L CEA G P+P + W
Sbjct: 2   GSSHHHHHHSSGLVP-----RGSHMAGFVQAPLS-QQRWVGGSVELHCEAVGSPVPEIQW 55

Query: 309 VK-------------YIAPFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAGT 353
                            A  DR          A  T  I ++ E D G Y+C   N    
Sbjct: 56  WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115

Query: 354 EEKVITVAV 362
                   V
Sbjct: 116 NHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 18/125 (14%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
           + +      M      P  SQ   VG   ++ C    G P P   W              
Sbjct: 12  SGLVPRGSHMAGFVQAP-LSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQL 69

Query: 231 VY---------------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-P 274
                                 +  + +   D G Y C A N   +  +     V  +  
Sbjct: 70  WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129

Query: 275 AVTIT 279
              + 
Sbjct: 130 QAVVL 134

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 28/119 (23%)

Query: 96  VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------------- 140
             P  Q    G  V + C++   P   I+W  + Q          +              
Sbjct: 26  QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85

Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
                T+ I+ + + D G Y C   N          + +V         +   A    +
Sbjct: 86  QHAASTISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRV-------KWVRAQAVVLVL 136

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAP-FDRNLERDELTSRAV 329
           P   +       +  G P+T  C   G P P + W K    I+P  D    + +L     
Sbjct: 9   PFFEMKLKH-YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
               +    D G Y  +  N  G       + V+     GP S
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ-AVNSGPSS 109

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE-- 140
           S  A   ++  +     EG  VT  C+ + +P   I W KD ++ + P      I  +  
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ-ISPKSDHYTIQRDLD 63

Query: 141 ---TLIINGITKADEGVYICSIQNAQGNV 166
              +L     T  D+G Y     N QG +
Sbjct: 64  GTCSLHTTASTLDDDGNYTIMAANPQGRI 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD--VEVYQELGV- 237
           P   +          G      C +  G P P   W +         D         G  
Sbjct: 9   PFFEMKLK-HYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            L        D+G YT +A N  G+      + V  + +
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIAS 334
               +  +V  G          G+P P   W K    I   DR        +     I  
Sbjct: 9   FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68

Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           V   D+        N AG       + V+
Sbjct: 69  VTGEDSASIMVKAINIAGETSSHAFLLVQ 97

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-- 236
           E P+I      SQT   G  A  +  +  G+P P   W +     +    +  Y      
Sbjct: 4   EAPKIFERI-QSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 237 -VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
             L   ++   D       A N AG+   +A++ V
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
              + Q+  +GS      +    P    +W K+  + +  +        E     L+I  
Sbjct: 10  ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK-IERSDRIYWYWPEDNVCELVIRD 68

Query: 147 ITKADEGVYICSIQNAQGNV 166
           +T  D    +    N  G  
Sbjct: 69  VTGEDSASIMVKAINIAGET 88

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 17/93 (18%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-----------TLIING 146
              Q    G +V +  + ++  A + W K+  E L                    LI + 
Sbjct: 15  LEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVE-LTREDSFKARYRFKKDGKRHILIFSD 73

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
           + + D G Y       Q       A + V++++
Sbjct: 74  VVQEDRGRYQVITNGGQCE-----AELIVEEKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS---R 327
           P + +TP E   V  G+ + +  E +      V W+K    +   D    R        R
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGT-----EEK 356
            +   + V + D G+Y+ I            EEK
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGGQCEAELIVEEK 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELG 236
             I + P   Q   VGDR ++    E  E      W++       +  F       ++  
Sbjct: 9   VLI-VTPLEDQQVFVGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 237 V--LRFNNIATGDEGKYTCIAENS 258
              L F+++   D G+Y  I    
Sbjct: 66  RHILIFSDVVQEDRGRYQVITNGG 89

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE---- 140
           S  AN            E       CK+  P+AT+ W K   E L  +     + E    
Sbjct: 5   SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLE-LRASGKHQPSQEGLTL 63

Query: 141 TLIINGITKADEGVYICSIQNAQ 163
            L I+ + KAD   Y C I  AQ
Sbjct: 64  RLTISALEKADSDTYTCDIGQAQ 86

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
                     + V         C+ T  P  TV+W K    +    +    ++ LT R  
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLR-- 64

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
            TI+++ ++D+  Y C      G  +    + V+ R 
Sbjct: 65  LTISALEKADSDTYTCD----IGQAQSRAQLLVQGRR 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 5/83 (6%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
                    +        A   C  +   P+ T TW +   + +     +  QE     L
Sbjct: 9   NCFTEEL-TNLQVEEKGTAVFTC--KTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65

Query: 239 RFNNIATGDEGKYTCIAENSAGK 261
             + +   D   YTC    +  +
Sbjct: 66  TISALEKADSDTYTCDIGQAQSR 88

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERD 322
           +   V       I   E V V+ G   T  C  +      V W      +   + N    
Sbjct: 5   SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
           +     V T+  +   D+G         AG +     + V  +P
Sbjct: 65  QPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 12/86 (13%)

Query: 83  CLAYLSPQANEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---- 135
             +    Q   V +          EGS  T  C+ S      + W  D    L  N    
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTP-LHANELNE 61

Query: 136 MIAGE----TLIINGITKADEGVYIC 157
           + A       L +  +   D G    
Sbjct: 62  IDAQPGGYHVLTLRQLALKDSGTIYF 87

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
           +S  V  R    I            G  A  +C + +        W             E
Sbjct: 5   SSGLVQGRR-VHIIEDL-EDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNE 61

Query: 231 VYQELG---VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
           +  + G   VL    +A  D G         AG +  +A + V   P+V
Sbjct: 62  IDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSV 106

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDE------LTSR 327
           A+      +     G  +   C+       T V+W        R LE  E          
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF----GVRQLENSEKYEITYEDGV 57

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
           A+  +  + + D G Y+C   N  G +     + V+   E
Sbjct: 58  AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGV--LRFNNIATG 246
                 G      C +E      TQ TW       +     E+  E GV  L   +I   
Sbjct: 10  HAVGEEGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKL 68

Query: 247 DEGKYTCIAENSAGKEVMNAYIHV 270
           D+G Y C   N  G++   A + V
Sbjct: 69  DDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 98  PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGIT 148
                  EG  V   CK  + D S  + W    ++ L  +    I  E     L +  IT
Sbjct: 8   IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQ-LENSEKYEITYEDGVAILYVKDIT 66

Query: 149 KADEGVYICSIQNAQG 164
           K D+G Y C + N  G
Sbjct: 67  KLDDGTYRCKVVNDYG 82

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
           P +   P        G+   I C     + +      R D +    P    +    +   
Sbjct: 6   PTLWAEP--GSVISWGNSVTIWC-----QGTLEAREYRLDKEESPAPWDRQNPLEPKNKA 58

Query: 237 VLRFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
                ++     G+Y C   +  G       +        + P ++  PS  V    G+ 
Sbjct: 59  RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLV--TSGKS 116

Query: 292 LTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
           +TL C+ +  PM T    K            E      +A + ++ V     G Y+C   
Sbjct: 117 VTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSS 175

Query: 349 NS 350
           + 
Sbjct: 176 HG 177

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
           P +   P   +S   G  +T+ C+ T          K    AP+DR     E  ++A ++
Sbjct: 6   PTLWAEPGSVIS--WGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQ-NPLEPKNKARFS 61

Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
           I S+ E  AG+Y+C  ++  G  +    + + +        +S  P   +          
Sbjct: 62  IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS-------- 113

Query: 390 EPEEGEYVYAVGSNASISCSVEPP 413
                      G + ++ C    P
Sbjct: 114 -----------GKSVTLLCQSRSP 126

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 26/169 (15%), Positives = 45/169 (26%), Gaps = 32/169 (18%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-------QEQLPPNMIAGETLIINGITKADEGVYI 156
             G+ VTI C+    +   +  K+        Q  L P   A     I  +T+   G Y 
Sbjct: 17  SWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKA--RFSIPSMTEDYAGRYR 74

Query: 157 CSIQNAQGNVFQ-DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEA------- 207
           C  ++  G     D   + +      P +   P  S     G    + C   +       
Sbjct: 75  CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP--SPLVTSGKSVTLLCQSRSPMDTFLL 132

Query: 208 ---GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
                  P           +   +            + + +   G Y C
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAE---------FPMSPVTSVHGGTYRC 172

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 12/115 (10%)

Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
           +S      +A + V  LP              G    L CE +      V W K    + 
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59

Query: 314 PFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
             DR +L +D         I  +   DAG+Y C+     G E     + V   P 
Sbjct: 60  DGDRHSLRQDGARCELQ--IRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 83  CLAYLSPQANEVQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MI 137
             A L+ +A  ++ T   R + A EG+   + C+     A ++W K ++  L       +
Sbjct: 9   TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHET-LRDGDRHSL 66

Query: 138 AGE----TLIINGITKADEGVYICSIQNAQ 163
             +     L I G+   D G Y+C     +
Sbjct: 67  RQDGARCELQIRGLVAEDAGEYLCMCGKER 96

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
            +       ++    G  A ++C L          W +     + G    + Q+     L
Sbjct: 20  IKFTEGL-RNEEATEGATAVLRCELS---KMAPVEWWKGHETLRDGDRHSLRQDGARCEL 75

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
           +   +   D G+Y C+     GKE  +A + V  +P+
Sbjct: 76  QIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVKYIAPFDRNLERDELTSRAVY---- 330
           I   +  +V+ GE +T   +     +   PT+ W K       +     L  +  +    
Sbjct: 11  IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70

Query: 331 -------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP---ISPRPG 376
                   I   +++ AG Y+C        +     + V       P     P  G
Sbjct: 71  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG 126

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 19/89 (21%)

Query: 97  TPRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPP---------------NMI 137
            P+  +   G  +T   K   +      TIKW K     L                 + +
Sbjct: 13  KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 138 AGETLIINGITKADEGVYICSIQNAQGNV 166
               + I        G Y C +       
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 190 SQTFIVGDRADIQCVLEAGEPS---PTQTWIR---------PDNDGKFGPDVEVYQELGV 237
             T  VG+       ++  E     PT  W +              +     E +  +  
Sbjct: 16  GGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74

Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
             ++         G Y C        +  +  + V      T
Sbjct: 75  FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM-----IAGE----TLIINGIT 148
               +A  G +V +EC+ ++  A +KW K+ +E + P       I  E     LII G T
Sbjct: 14  LEDTTAYCGERVELECEVSEDDANVKWFKNGEE-IIPGPKSRYRIRVEGKKHILIIEGAT 72

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
           KAD   Y       Q +     A + VD +  P
Sbjct: 73  KADAAEYSVMTTGGQSS-----AKLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 274 PAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDR-NLERDELTS 326
             + +T   E  +   GE + LECE +      V W K        P  R  +  +    
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGT 353
                I    ++DA +Y  +      +
Sbjct: 65  I--LIIEGATKADAAEYSVMTTGGQSS 89

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 14/80 (17%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE--LGVLRFN 241
             T   G+R +++C  E  E      W      I P    ++     +  E    +L   
Sbjct: 16  DTTAYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRY----RIRVEGKKHILIIE 69

Query: 242 NIATGDEGKYTCIAENSAGK 261
                D  +Y+ +       
Sbjct: 70  GATKADAAEYSVMTTGGQSS 89

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 58.8 bits (142), Expect = 7e-11
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)

Query: 288 PGEPLTLECEATGRPMPTVSWVK---------YIAPFDRNLERDELTSRAVYTIASVRES 338
                 +     G+P P++ W+          +I         +E        +      
Sbjct: 14  EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73

Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHRP-EYGPISPRP 375
           + G Y  +  N  G     I  A    P E+ P  P P
Sbjct: 74  NNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIP 111

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 18/104 (17%)

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEV---------YQELGVLRFNNIATGDEGKYTCIAENS 258
           G+P+P+  W+   +       +               G LR N     + G YT +A N 
Sbjct: 26  GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85

Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
            G+   +     +  P             P +P+      +G P
Sbjct: 86  FGQASASIMAAFMDNP---------FEFNPEDPIPDTNSTSGDP 120

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 20/101 (19%)

Query: 98  PRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQE-------------QLPPNMIAGE 140
           P         ++   C        P+ +++W  +                      +   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
            L +N  T  + G Y     N  G   Q  ASI     + P
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFMDNP 101

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 60.7 bits (146), Expect = 9e-11
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
           P     P   V+V  G    L C         +V W                T R+V T+
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---QSDTGRSVLTV 63

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
            +   S AG   C+G     T +  + + V   P    +SP  
Sbjct: 64  RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAA 106

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 58.0 bits (139), Expect = 6e-10
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 9/157 (5%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
           P       +G    + C L   +   +  W   D        V+      VL   N +  
Sbjct: 13  PEPVVAVALGASRQLTCRLACADRGASVQWRGLD---TSLGAVQSDTGRSVLTVRNASLS 69

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEATG-RPMP 304
             G   C+             + V   P  +T++P+  V         + C A    P+ 
Sbjct: 70  AAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALV----PGDPEVACTAHKVTPVD 125

Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
             +    +    + LE  +     V       + D  
Sbjct: 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 162

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 11/135 (8%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSK-DNQEQLPPNMIAGETLIINGITK 149
           +V+      +   G+   + C+    D  A+++W   D       +      L +   + 
Sbjct: 9   QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASL 68

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
           +  G  +C              ++Q+     P        S   +V    ++ C      
Sbjct: 69  SAAGTRVCVGSCGGR---TFQHTVQLLVYAFPNQ---LTVSPAALVPGDPEVACTAHKVT 122

Query: 210 P--SPTQTWIRPDND 222
           P      ++      
Sbjct: 123 PVDPNALSFSLLVGG 137

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 63.3 bits (153), Expect = 9e-11
 Identities = 26/175 (14%), Positives = 46/175 (26%), Gaps = 15/175 (8%)

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
             P     W    +  +             L  +            +  +     +    
Sbjct: 102 NGPLGNPIWNISGDPTR-------TWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154

Query: 268 IHVLTLP---AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNL 319
           + VL  P          + V V  G+  T +C A GR +              AP     
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
                   A + + +  + DAG+Y+C+ +   G         V   P      P+
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 36/244 (14%), Positives = 58/244 (23%), Gaps = 10/244 (4%)

Query: 115 SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQ 174
           +N P     W+       P        L I+        V    I +             
Sbjct: 101 NNGPLGNPIWNISGD---PTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKV 157

Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--- 231
           +              +     G  A  QC    G             D +  P  E+   
Sbjct: 158 LGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVT 216

Query: 232 --YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPG 289
              + +      N    D GKY C+     G  + N    V+  P V I P +  SV   
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276

Query: 290 E-PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
              + L   +     P V+          +    +      Y I  +      +   +  
Sbjct: 277 YLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLT 336

Query: 349 NSAG 352
               
Sbjct: 337 RPGE 340

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIING 146
            ++        +G +V    +  DP   +KW K+ QE + P+   +   +     L IN 
Sbjct: 11  AKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQE-IRPSTKYIFEHKGCQRILFINN 69

Query: 147 ITKADEGVYICSIQNAQ 163
               D+  Y  +  + +
Sbjct: 70  CQMTDDSEYYVTAGDEK 86

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
            A          V  G  +    E    P   V W K    I P  + +   +   R + 
Sbjct: 8   AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL- 65

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
            I + + +D  +Y       AG E+    + V   P
Sbjct: 66  FINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTC 253
           G R       E  +P     W +   + +         +     L  NN    D+ +Y  
Sbjct: 23  GGRVRFVV--ELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80

Query: 254 IAENSAGKEVMNAYIHVLTLPA 275
                AG E  +  + V + P+
Sbjct: 81  T----AGDEKCSTELFVRSGPS 98

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 31/214 (14%), Positives = 50/214 (23%), Gaps = 13/214 (6%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
           P+  QVTI C+ N  +   +   +          PP  I      I  +     G Y C 
Sbjct: 19  PKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 78

Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR 218
            +  +           V         +  +     I G++    C       +     ++
Sbjct: 79  YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC--RLDTATSMFLLLK 136

Query: 219 PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS--AGKEVMNA-YIHVLTLPA 275
                         Q         + T   G Y C    +  A         + V     
Sbjct: 137 EGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE 194

Query: 276 VTITPSEYVSVRPGEPLTLECE-ATGRPMPTVSW 308
            T    E  +       T      TG       W
Sbjct: 195 NTSLAPEDPTFPADTWGTYLLTTETGLQKDHALW 228

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 58.8 bits (142), Expect = 4e-10
 Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 17/177 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
           P I   P          +  I C              +   +G                 
Sbjct: 8   PFIWAEP--HFMVPKEKQVTICCQG----NYGAV-EYQLHFEGSLFAVDRPKPPERINKV 60

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLT 293
                ++ +   G+Y+CI          +  + ++        T++      V  GE +T
Sbjct: 61  KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120

Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
             C            +K       +++R     +A + +  V  +  G Y+C G  +
Sbjct: 121 FYCR-LDTATSMFLLLKEGR--SSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
           P +   P   V     + +T+ C+                +   DR  +  E  ++  + 
Sbjct: 8   PFIWAEPHFMVP--KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDR-PKPPERINKVKFY 63

Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
           I  +    AGQY CI +      E   ++ + V    +   +S  PG +++   
Sbjct: 64  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 117

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 24/182 (13%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--- 237
           P I      S    +     IQC           T +    +  +       +       
Sbjct: 10  PFISAKS--SPVIPLDGSVKIQCQ---AIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64

Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-----PAVTITPSEYVSVRPGEP 291
               +++     G+Y C       +   +  + ++       P ++      +   PGE 
Sbjct: 65  EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL--MPGEN 122

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RAVYTIASVRESDAGQYKCIGK 348
           ++L C +   P    S  K     +  L   +  S    A +++  V  + +G Y+C G 
Sbjct: 123 ISLTCSSAHIPFDRFSLAK-----EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGW 177

Query: 349 NS 350
            +
Sbjct: 178 YN 179

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 31/149 (20%)

Query: 269 HVLTLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY----IAPFDRNLERD 322
                P   I+   S  +       + ++C+A  R       +           R L + 
Sbjct: 3   QEGDFPMPFISAKSSPVIP--LDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL-KF 58

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADIL 380
              +   + I  +  + AG+Y+C  +           + + V        +S   G  ++
Sbjct: 59  WNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLM 118

Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCS 409
           P                   G N S++CS
Sbjct: 119 P-------------------GENISLTCS 128

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 14/159 (8%)

Query: 104 PEGSQVTIECKSNDPSATIK--WSKDNQEQLPPNMIAGET-----LIINGITKADEGVYI 156
           P    V I+C++   +   +    K++  +     +          +I+ +     G Y 
Sbjct: 21  PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80

Query: 157 CSIQNAQGN-VFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ 214
           C  +       + D   + V      P +          + G+   + C      P    
Sbjct: 81  CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSSA-HIPFDRF 137

Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
           +  +             +          +     G Y C
Sbjct: 138 SLAKEGELSLPQHQSGEHP--ANFSLGPVDLNVSGIYRC 174

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIING 146
            +         +G ++ +  +  D  A +KW K+ QE        +        TL I+ 
Sbjct: 19  QKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQ 78

Query: 147 ITKADEGVYICSIQNAQG 164
            + AD+  Y C +   + 
Sbjct: 79  CSLADDAAYQCVVGGEKC 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERD 322
           + +      A          V  G  + L  E        V W+K    I         +
Sbjct: 8   SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFE 66

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            + ++   TI+    +D   Y+C+     G E+    + V+
Sbjct: 67  SIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 9/101 (8%), Positives = 24/101 (23%), Gaps = 15/101 (14%)

Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDN 221
             +    +D+++    +     +     G +  +    E  +      W      I+   
Sbjct: 3   HHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSG 60

Query: 222 DGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENSAG 260
                             L  +  +  D+  Y C+      
Sbjct: 61  S-----KYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC 96

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
           PR      GS    E ++      ++W +   + +  +    +A E    TL +  +  A
Sbjct: 15  PRSVEVAAGSPAVFEAETERAGVKVRWQRGGSD-ISASNKYGLATEGTRHTLTVREVGPA 73

Query: 151 DEGVYICSIQNAQG 164
           D+G Y     +++ 
Sbjct: 74  DQGSYAVIAGSSKV 87

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
            +        V V  G P   E E        V W +    I+  ++  L  +       
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT-- 64

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            T+  V  +D G Y  I    AG+ +    + V 
Sbjct: 65  LTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGD 247
           S     G  A  +   E         W R  +D        +  E     L    +   D
Sbjct: 17  SVEVAAGSPAVFEA--ETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74

Query: 248 EGKYTCIAENSAGK 261
           +G Y  IA +S  K
Sbjct: 75  QGSYAVIAGSSKVK 88

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 36/192 (18%)

Query: 102 SAPEGSQVTIECKSNDPSA-----TIKWSKDNQEQLP----PNMIAGE------------ 140
           +       T+ C  N          I W K+ +  L        I  E            
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 141 -TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVG 196
            +++I  +  +DEG Y C +   + + F+     +V    K + P   I      T    
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPT---S 121

Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT------GDEGK 250
           +   I C    G P P  +W+  +N  +         +        +++           
Sbjct: 122 NIRRIICSTSGGFPEPHLSWL--ENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179

Query: 251 YTCIAENSAGKE 262
           + C+ +    + 
Sbjct: 180 FMCLIKYGHLRV 191

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 12/133 (9%)

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPLTL 294
           +    +   DEG Y C+            ++  +TL      P+  +S   +       +
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126

Query: 295 ECEATG-RPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIAS---VRESDAGQYKCIG 347
            C  +G  P P +SW++    +   +  + +D      +Y ++S      +    + C+ 
Sbjct: 127 ICSTSGGFPEPHLSWLENGEELNAINTTVSQD--PETELYAVSSKLDFNMTTNHSFMCLI 184

Query: 348 KNSAGTEEKVITV 360
           K       +    
Sbjct: 185 KYGHLRVNQTFNW 197

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 87  LSPQANEVQVTPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPNMIAGETLII 144
           LS +A+    +      P  +   I C ++   P   + W  +N E+L            
Sbjct: 102 LSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSW-LENGEELNAINTTVSQDPE 160

Query: 145 NG---------ITKADEGVYICSIQN 161
                              ++C I+ 
Sbjct: 161 TELYAVSSKLDFNMTTNHSFMCLIKY 186

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLERDELTSRA 328
           + ++T   +E ++V  G+ LTL+C  + R   ++ W+      I   +  + ++      
Sbjct: 1   MGSLT-NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59

Query: 329 VY-------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE----YGPISPRP 375
            +       T+ +V   D G YKC+   S     K + V V    +      P   RP
Sbjct: 60  HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGEFCRYPSHWRP 116

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 17/123 (13%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN------------DGKFGP 227
           M  +  H   + T   G    ++CV      + +  W+ P              + K+  
Sbjct: 1   MGSLTNHTE-TITVEEGQTLTLKCVTS-LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58

Query: 228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR 287
                 +   +   N+   DEG Y C+   S         + VL               R
Sbjct: 59  LHHSANQ-LSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYP-SHWR 115

Query: 288 PGE 290
           P E
Sbjct: 116 PLE 118

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 16/81 (19%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---------------T 141
               +  EG  +T++C  S   +++++W   +   +  N                    +
Sbjct: 8   TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67

Query: 142 LIINGITKADEGVYICSIQNA 162
           + +  +T  DEGVY C   + 
Sbjct: 68  ITVPNVTLQDEGVYKCLHYSD 88

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
                   G     E + ++P    +W    Q  L  +    I  +     LI++     
Sbjct: 12  LYGVEVFVGETAHFEIELSEPDVHGQWKLKGQP-LAASPDCEIIEDGKKHILILHNCQLG 70

Query: 151 DEGVYICSIQNAQ 163
             G       N +
Sbjct: 71  MTGEVSFQAANTK 83

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
           V V  GE    E E +  P     W      +A      +  D         + + +   
Sbjct: 15  VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQLGM 71

Query: 340 AGQYKCIGKNSAGT 353
            G+      N+   
Sbjct: 72  TGEVSFQAANTKSA 85

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 180 MPRIRI-HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQE- 234
           M  I +  P       VG+ A  +   E  EP     W      G+     PD E+ ++ 
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKL---KGQPLAASPDCEIIEDG 57

Query: 235 -LGVLRFNNIATGDEGKYTCIAENSAGK 261
              +L  +N   G  G+ +  A N+   
Sbjct: 58  KKHILILHNCQLGMTGEVSFQAANTKSA 85

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 31/218 (14%), Positives = 56/218 (25%), Gaps = 49/218 (22%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK--------SNDPSATIKWSKDNQEQLPPNMIAGE---- 140
           E+QV  +  +  EG  V + C          + P   + W +D +      ++A      
Sbjct: 3   ELQV-QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61

Query: 141 ---------------------TLIINGITKADEGVYICSIQN---AQGNVFQDYASIQV- 175
                                +L I      D G Y   ++     + +  Q+  +++V 
Sbjct: 62  RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121

Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---GEPSPTQTWIRPDNDGKFGPDVEVY 232
              E P I            G    + C L       P  T +W          P     
Sbjct: 122 ALIEKPDIHFLEPLES----GRPTRLSCSLPGSCEAGPPLTFSWTGNAL----SPLDPET 173

Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
                L             TC  +    +      + +
Sbjct: 174 TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 55.6 bits (133), Expect = 5e-09
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 13/161 (8%)

Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
           +     ++P+  G+F    +V ++   L   +    D G Y    E     +       +
Sbjct: 57  NNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKL 116

Query: 271 -LTLPAVTITPSEYVS--VRPGEPLTLECEAT----GRPMPTVSWVKYIAPFDRNLERDE 323
            L + A+   P  +    +  G P  L C         P  T SW         +    E
Sbjct: 117 NLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN----ALSPLDPE 172

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITVAV 362
            T  +  T+    E       C  K      T E+ + + V
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 22/183 (12%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRF 240
             + P        G    + C      P                 G      Q + +   
Sbjct: 5   ADLQPR-VAFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQRGLRWLARQLVDI--- 59

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEAT 299
                  E +  C    +         I     P  V + P        GE  TL C   
Sbjct: 60  ----REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLP-PWQPVGENFTLSCRVP 114

Query: 300 G---RPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
           G   R   T++ ++         F          +    T+ + RE     + C  +   
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGE-PPRARGAVLTATVLARREDHGANFSCRAELDL 173

Query: 352 GTE 354
              
Sbjct: 174 RPH 176

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 13/181 (7%)

Query: 90  QANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
           +     + PR      G  + + C +N             +       +      +  I 
Sbjct: 1   EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR 60

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEA 207
           +  E   +C  + A     Q    I+  +R +   +   P       VG+   + C +  
Sbjct: 61  E-PETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLP---PWQPVGENFTLSCRVPG 115

Query: 208 GEPSP--TQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
             P    T T +R           G        +               ++C AE     
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175

Query: 262 E 262
            
Sbjct: 176 H 176

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 52.8 bits (126), Expect = 3e-08
 Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 8/111 (7%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
             + P     V  G  L L C               +    R              +  +
Sbjct: 5   ADLQPRV-AFVERGGSLWLNCSTNCPRPERGGLETSL----RRNGTQRGLRWLARQLVDI 59

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
           RE    Q  C  + +  T +    +    RP+   + P P     P G+ +
Sbjct: 60  RE-PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLP--PWQPVGENF 107

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
               +     Q   +C+ +D   T KW K+  E + P+    I+       L+I+ +   
Sbjct: 15  IADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVE-VRPSKRITISHVGRFHKLVIDDVRPE 73

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
           DEG Y         +      S +++  E+    
Sbjct: 74  DEGDYTFVPDGYALS-----LSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
           ++V+  E    +CE +     T  W K    + P  R  +       + V  I  VR  D
Sbjct: 18  LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV--IDDVRPED 74

Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
            G Y  +    A +      +        GP S
Sbjct: 75  EGDYTFVPDGYALSLS--AKLNFLEIKVSGPSS 105

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
             +     A  T    ++A  +C  E  +   T  W +   + +    + +        L
Sbjct: 9   LEVLQDI-ADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKL 65

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
             +++   DEG YT + +  A    ++A ++ L +    
Sbjct: 66  VIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 37/185 (20%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN---------------DGKFGPDVEVYQELGVL 238
           I G    +  +          TW+   N               +  F   V++ +  G L
Sbjct: 12  ITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGAL 71

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV---LTLPAVTITPSEYVSVRPGEPLTLE 295
           R  N++  D G Y     +    +     + V   ++ P +    S           TL 
Sbjct: 72  RIYNVSKEDRGDYYMRMLHETEDQ-WKITMEVYEMVSKPMIYWECSN---------ATLT 121

Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
           CE        +   +          ++ L S    T++    +    +KC   N    E 
Sbjct: 122 CEVLEGTDVELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172

Query: 356 KVITV 360
           ++  V
Sbjct: 173 EMEVV 177

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 41/187 (21%)

Query: 97  TPRQQSAPEGSQVTIECKSNDPS--ATIKWSKDNQEQLPPNMIAGE-------------- 140
           +    +A  GS VT+    +  +    + W     +++      G+              
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV 195
                 L I  ++K D G Y   + +   + ++   +++V +  + +  I+   S     
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEM-VSKPMIYWECSNAT-- 119

Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
                + C +  G         +           E  + L     +   T     + C A
Sbjct: 120 -----LTCEVLEG-TDVELKLYQGK---------EHLRSLRQKTMSYQWTNLRAPFKCKA 164

Query: 256 ENSAGKE 262
            N   +E
Sbjct: 165 VNRVSQE 171

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKADEG 153
            +     +V + C+ +       W KD Q+ +  +   ++  +     LI+      D G
Sbjct: 20  LTFTTSERVVLTCELSRVDFPATWYKDGQK-VEESELLVVKMDGRKHRLILPEAKVQDSG 78

Query: 154 VYICSIQNAQGN 165
            + C  +     
Sbjct: 79  EFECRTEGVSAF 90

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 274 PAVTITPSEY--VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSR 327
           P   ++P +   ++    E + L CE +       +W K    +   +   ++ D    R
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHR 66

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
               +   +  D+G+++C              V V+
Sbjct: 67  --LILPEAKVQDSGEFECR----TEGVSAFFGVTVQ 96

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIA 244
              S TF   +R  + C  E        TW +     +    + V  +     L      
Sbjct: 16  DKVSLTFTTSERVVLTC--ELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAK 73

Query: 245 TGDEGKYTCIAENSAGK 261
             D G++ C  E  +  
Sbjct: 74  VQDSGEFECRTEGVSAF 90

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 55.5 bits (133), Expect = 7e-10
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFD----------R 317
               P +T+ P E  S   G  ++  C A        T +W                  R
Sbjct: 7   DFPXPQITVQP-ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65

Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
               + +    +  + +V  +  G Y+C+  N  G+
Sbjct: 66  AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGS 101

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 20/112 (17%)

Query: 82  ICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQE-------- 130
           +C  +  PQ   + V P  QSA  GS V+  C    S+D   T  W  DN+         
Sbjct: 4   VCDDFPXPQ---ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMEN 60

Query: 131 ------QLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
                 Q    M     L +  +    EG Y C I N  G+ +   A + ++
Sbjct: 61  YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF------ 225
               D    P+I + P  +Q+ I G      C           T+    ++         
Sbjct: 2   GFVCDDFPXPQITVQP-ETQSAIXGSDVSFTCSAA-SSSDSPMTFAWXXDNEALQDAEME 59

Query: 226 ------GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
                     E+ +   +LR  N+    EG Y C+  N  G
Sbjct: 60  NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 405 SISCSVEP-PRITLRPVRQTVKPGDIANIRCSAIG--ATPISIRW 446
              C   P P+IT++P  Q+   G   +  CSA     +P++  W
Sbjct: 2   GFVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAW 46

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
            R+  A  G+  T+ C+       + W KD ++ L  +    +        L++    +A
Sbjct: 18  HREVQAEAGASATLSCEVAQAQTEVTWYKDGKK-LSSSSKVRVEAVGCTRRLVVQQAGQA 76

Query: 151 DEGVYICSIQNAQG 164
           + G Y C     Q 
Sbjct: 77  EAGEYSCEAGGQQL 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
           V    G   TL CE        V+W K    ++   +  +E    T R    +    +++
Sbjct: 21  VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRR--LVVQQAGQAE 77

Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
           AG+Y C     AG ++    + V  +  +G
Sbjct: 78  AGEYSCE----AGGQQLSFRLQVAGQC-FG 102

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 10/77 (12%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIA 244
                 G  A + C  E  +     TW +   DGK       V V        L      
Sbjct: 20  EVQAEAGASATLSC--EVAQAQTEVTWYK---DGKKLSSSSKVRVEAVGCTRRLVVQQAG 74

Query: 245 TGDEGKYTCIAENSAGK 261
             + G+Y+C A      
Sbjct: 75  QAEAGEYSCEAGGQQLS 91

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
              Q    G  V + C+ +     + W KD +  +  +    +  E     L+I G +  
Sbjct: 15  LEDQWVAPGEDVELRCELSRAGTPVHWLKDRKA-IRKSQKYDVVCEGTMAMLVIRGASLK 73

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
           D G Y C ++ ++       AS+ V+++   
Sbjct: 74  DAGEYTCEVEASKST-----ASLHVEEKASG 99

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
           PA  I P E   V PGE + L CE +    P V W+K    I    + ++  +   +  V
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
             I      DAG+Y C  + S  T      + VE +   GP S
Sbjct: 67  --IRGASLKDAGEYTCEVEASKSTAS----LHVEEKAS-GPSS 102

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
             I I P   Q    G+  +++C L     +P   W++     +     +V  E  +  L
Sbjct: 9   AAI-IKPLEDQWVAPGEDVELRCELS-RAGTPV-HWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
                +  D G+YTC  E S       A +HV    +
Sbjct: 66  VIRGASLKDAGEYTCEVEASKST----ASLHVEEKAS 98

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 27/176 (15%)

Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKA-DEGVYICSIQNAQG 164
           G+ V + C   D    +KW K+ QE    +    + L++   ++  D G Y+C    +  
Sbjct: 14  GTSVELTCPL-DSDENLKWEKNGQELPQKH---DKHLVLQDFSEVEDSGYYVCYTPASNK 69

Query: 165 NVF--------------QDYASIQVDKREMPRIRIHPNASQTFIV---GDRADIQCVLEA 207
           N +              +D A     K++  +           +V   G R D   +L  
Sbjct: 70  NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC 129

Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
           G    T  W++   DG     +   +        N A    G Y C         +
Sbjct: 130 GLTDKTIKWLK---DGSIISPLNATKN--TWNLGNNAKDPRGTYQCQGAKETSNPL 180

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
            Q N+ +   +   +     V + C       TIKW KD    + P      T  +    
Sbjct: 105 SQTNKAKNLVQVDGSRGDGSVLLTC--GLTDKTIKWLKDGSI-ISPLNATKNTWNLGNNA 161

Query: 149 KADEGVYICSIQNAQGNVFQDY 170
           K   G Y C       N  Q Y
Sbjct: 162 KDPRGTYQCQGAKETSNPLQVY 183

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 54/207 (26%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA-T 245
               +  I G   ++ C L+         W +   +G+  P          L   + +  
Sbjct: 5   NIEYKVSISGTSVELTCPLD---SDENLKWEK---NGQELPQKHDKH----LVLQDFSEV 54

Query: 246 GDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP----------------- 288
            D G Y C    S     +     V +        ++    +                  
Sbjct: 55  EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114

Query: 289 -------GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRES 338
                     + L C  T     T+ W+K    I+P +          +  + + +  + 
Sbjct: 115 QVDGSRGDGSVLLTCGLTD---KTIKWLKDGSIISPLNAT--------KNTWNLGNNAKD 163

Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHR 365
             G Y+C G            + V +R
Sbjct: 164 PRGTYQCQGAKETSN-----PLQVYYR 185

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 29/183 (15%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
           P I   P          +  I C              +   +G                 
Sbjct: 5   PFIWAEP--HFMVPKEKQVTICCQG----NYGAV-EYQLHFEGSLFAVDRPKPPERINKV 57

Query: 237 VLRFNNIATGDEGKYTCIAENSAGK---------EVMNAYIHVLTLPAVTITPSEYVSVR 287
                ++ +   G+Y+CI                 V   Y      P +++ P   V   
Sbjct: 58  KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMY----DTPTLSVHPGPEV--I 111

Query: 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
            GE +T  C            +K       +++R     +A + +  V  +  G Y+C G
Sbjct: 112 SGEKVTFYCR-LDTATSMFLLLKEGR--SSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168

Query: 348 KNS 350
             +
Sbjct: 169 SYN 171

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
           TLP   I   P   V     + +T+ C+                +   DR  +  E  ++
Sbjct: 1   TLPKPFIWAEPHFMVP--KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDR-PKPPERINK 56

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
             + I  +    AGQY CI +      E   ++ + V    +   +S  PG +++   
Sbjct: 57  VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 11/161 (6%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
           P+  QVTI C+ N  +   +   +          PP  I      I  +     G Y C 
Sbjct: 16  PKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 75

Query: 159 IQNAQGNVFQ-DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
            +  +      +   + V +       +  +     I G++    C       +     +
Sbjct: 76  YRVGELWSEPSNLLDLVVTEM-YDTPTLSVHPGPEVISGEKVTFYC--RLDTATSMFLLL 132

Query: 218 RPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
           +              Q         + T   G Y C    +
Sbjct: 133 KEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSYN 171

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 33/180 (18%)

Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN------------DGKFGPDVEVYQELGVLRFN 241
           +V           +  P     W +  +               F   V +    G L   
Sbjct: 8   VVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65

Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHV-LTLPAVTITPSEYVSVRPGEPLTLECEATG 300
           N+ + DE +Y   + N         Y+   ++ P +    S           TL CE   
Sbjct: 66  NLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSN---------ATLTCEVLE 116

Query: 301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
                +   +          ++ L S    T++    +    +KC   N    E ++  V
Sbjct: 117 GTDVELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 37/181 (20%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSK--------DNQEQLPPNMIAGE--------T 141
            +Q        VT    SN P   + W K        +N E    +             +
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
           L I  +T +DE  Y     N           + V +  + +  I+   S          +
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEM-VSKPMIYWECSNAT-------L 110

Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
            C +  G     + +             E  + L     +   T     + C A N   +
Sbjct: 111 TCEVLEGTDVELKLYQ----------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160

Query: 262 E 262
           E
Sbjct: 161 E 161

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 41/143 (28%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRN--LERDELTSRAVY----- 330
           S+ +       +T    +   P+  V W K    +A  + +         +R        
Sbjct: 2   SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 331 --TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
             TI ++  SD  +Y+    N   T +    + V                          
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMK--FFLYVLEMV---------------------- 96

Query: 389 PEPEEGEYVYAVGSNASISCSVE 411
            +P     +Y   SNA+++C V 
Sbjct: 97  SKPM----IYWECSNATLTCEVL 115

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 14/99 (14%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVK-----YIAPFDRNLERDELTSRAV 329
           +   +   V  G  +T      G  +   P V W K       +   ++L+  +   RA 
Sbjct: 8   VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67

Query: 330 Y------TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                   I   + +  G Y+C        +     + V
Sbjct: 68  KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 19/88 (21%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPP---------------NMIA 138
           P+      G  +T   + +         +KW K     L                 + + 
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 139 GETLIINGITKADEGVYICSIQNAQGNV 166
              L I     A  G Y C +       
Sbjct: 71  LFELHITDAQPAFTGSYRCEVSTKDKFD 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 13/94 (13%), Positives = 18/94 (19%), Gaps = 13/94 (13%)

Query: 190 SQTFIVGDRADIQCVLEAGEPS--PTQTWIR------PDNDG-----KFGPDVEVYQELG 236
                VG        +        P   W +          G         D      L 
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            L   +      G Y C        +  N  + V
Sbjct: 73  ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---MIAGE-- 140
           S     +    +     EG   + EC       S    W+   +  +  +       +  
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKT-VGSSSRFQATRQGR 63

Query: 141 --TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
              L++     +D G  + S++          AS+ V +R  P
Sbjct: 64  KYILVVREAAPSDAGEVVFSVRGLTSK-----ASLIVRERSGP 101

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 6/88 (6%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGD 247
           +   + G+    +CVL     S    W             +  ++     L     A  D
Sbjct: 17  TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSD 76

Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
            G+          K    A + V     
Sbjct: 77  AGEVVFSVRGLTSK----ASLIVRERSG 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVKY---IAPFDR-NLERDELTSRAVYTIASVRES 338
           + V  GE  + EC  +         W      +    R    R          +     S
Sbjct: 18  MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI--LVVREAAPS 75

Query: 339 DAGQYKCIGKNSAGT 353
           DAG+     +     
Sbjct: 76  DAGEVVFSVRGLTSK 90

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P ++  P  S    +     ++C      P     +       K       YQ+  VL  
Sbjct: 9   PSLQALP--SSLVPLEKPVTLRCQG----PPGVDLYR----LEKLSSSR--YQDQAVLFI 56

Query: 241 NNIATGDEGKYTCIAENSAGKEVM--NAYIHVLTL---PAVTITPSEYVSVRPGEPLTLE 295
             +     G+Y C  +N +   +      +    +   P+++  P    +V  G  +TL+
Sbjct: 57  PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGP--AVSSGGDVTLQ 114

Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
           C+ T       +  K   P     +  E   RA + I +V  + +G Y+C   +S
Sbjct: 115 CQ-TRYGFDQFALYKEGDP--APYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 29/194 (14%), Positives = 50/194 (25%), Gaps = 33/194 (17%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQ 163
           P    VT+ C+        +  K +      +      L I  + ++  G Y CS QN  
Sbjct: 20  PLEKPVTLRCQGPPGVDLYRLEKLS-SSRYQDQ---AVLFIPAMKRSLAGRYRCSYQNGS 75

Query: 164 GNVFQ-DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
                 D   +        P +   P        G    +QC  +           +  +
Sbjct: 76  LWSLPSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQC--QTRYGFDQFALYKEGD 131

Query: 222 DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
              +      Y+         +     G Y C + +S                       
Sbjct: 132 PAPYKNPERWYR--ASFPIITVTAAHSGTYRCYSFSSR---------------------D 168

Query: 282 EYVSVRPGEPLTLE 295
            Y+   P +PL L 
Sbjct: 169 PYLWSAPSDPLELV 182

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 32/145 (22%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P++   PS  V     +P+TL C+     +      K        L       +AV  I 
Sbjct: 9   PSLQALPSSLVP--LEKPVTLRCQGP-PGVDLYRLEK--------LSSSRYQDQAVLFIP 57

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP--ISPRPGADILPDGDEYYRPEP 391
           +++ S AG+Y+C  +N +        + +     +    +S +PG  +            
Sbjct: 58  AMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS---------- 107

Query: 392 EEGEYVYAVGSNASISCSVEPPRIT 416
                    G + ++ C        
Sbjct: 108 ---------GGDVTLQCQTRYGFDQ 123

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 270 VLTLPAVTITPSE--YVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDE 323
              + +  + PS   YV+    E + L CE   RP   V W K    +       L++++
Sbjct: 7   GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKED 65

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
              R V  + +V+  D+G+Y C        E    TV V   P
Sbjct: 66  TVRRLV--LPAVQLEDSGEYLC----EIDDESASFTVTVTEPP 102

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
               +A    +V + C+   P A ++W+KD +E +  +   ++  E     L++  +   
Sbjct: 20  KVYVAAVRLERVVLTCELCRPWAEVRWTKDGEE-VVESPALLLQKEDTVRRLVLPAVQLE 78

Query: 151 DEGVYICSIQNAQ 163
           D G Y+C I +  
Sbjct: 79  DSGEYLCEIDDES 91

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 179 EMPRIRIHPNASQ--TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG 236
           ++    ++P+       +  +R  + C  E   P     W +   +    P + + +E  
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTC--ELCRPWAEVRWTKDGEEVVESPALLLQKEDT 66

Query: 237 V--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
           V  L    +   D G+Y C        E  +  + V   P   I    
Sbjct: 67  VRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVRIIYSGP 110

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 55.4 bits (133), Expect = 7e-09
 Identities = 34/233 (14%), Positives = 57/233 (24%), Gaps = 42/233 (18%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGITKADEGVYI 156
                V ++C S+         ++ +            + ++     I  + +   G Y 
Sbjct: 19  KSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78

Query: 157 CSIQNAQGNVFQ----DYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---- 207
           C               D   I +    E P +   P    T + G+   + C   +    
Sbjct: 79  CYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP--GPTVLAGESVTLSCSSRSSYDM 136

Query: 208 ------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
                 GE    +    P  +G F              F        G Y C        
Sbjct: 137 YHLSREGEAHERRFSAGPKVNGTF-----------QADFPLGPATHGGTYRCFGSFRDSP 185

Query: 262 EVMNAYIHVLTLPAVTITPSEYV------SVRPGEPLTLECEATGRPMPTVSW 308
              +     L +  VT  PS         S   G P  L   A  + +     
Sbjct: 186 YEWSNSSDPLLVS-VTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDL 237

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
           P++   P   V     E + L+C +           +   +        E  +  S+A +
Sbjct: 8   PSLLAHPGPLVK--SEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANF 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-----KVITVAVEHRPEYGPISPRPGADILP 381
           +I  + +  AG Y+C G  +    +       + + +    E   +S +PG  +L 
Sbjct: 65  SIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLA 120

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 29/187 (15%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----- 235
           P +  HP         +   +QC                  +GKF   + +  E      
Sbjct: 8   PSLLAHP--GPLVKSEETVILQC-----WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVS 60

Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSV 286
                   +     G Y C    +     ++A    L +        P+++  P    +V
Sbjct: 61  KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP--TV 118

Query: 287 RPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
             GE +TL C  +          +             +   T +A + +     +  G Y
Sbjct: 119 LAGESVTLSCS-SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTY 175

Query: 344 KCIGKNS 350
           +C G   
Sbjct: 176 RCFGSFR 182

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 21/182 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
             +   P        G+   I+C     + +      R   +G   P    +    +   
Sbjct: 6   ATLWAEP--GSVISRGNSVTIRC-----QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKA 58

Query: 237 VLRFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
                ++     G+Y C   + AG       +          P ++  PS  V+   GE 
Sbjct: 59  RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVT--SGEN 116

Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR---AVYTIASVRESDAGQYKCIGK 348
           +TL+C +  R    +   +        L+     S    A++ +  V  S     +C G 
Sbjct: 117 VTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGS 176

Query: 349 NS 350
             
Sbjct: 177 RR 178

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
             +   P   +S   G  +T+ C+ T         VK     P+D      E  ++A ++
Sbjct: 6   ATLWAEPGSVIS--RGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQ-NPLEPKNKARFS 61

Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
           I S+ E  AG+Y+C   + AG  E    + + V        +S  P   +    
Sbjct: 62  IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGE 115

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 27/202 (13%), Positives = 45/202 (22%), Gaps = 36/202 (17%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
             G+ VTI C+    +   +  K+        Q P          I  +T+   G Y C 
Sbjct: 17  SRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCY 76

Query: 159 IQNAQGNVFQ-DYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216
             +  G     D   + V      P +   P  S     G+   +QC   +         
Sbjct: 77  YYSPAGWSEPSDPLELVVTGFYNKPTLSALP--SPVVTSGENVTLQC--GSRLRFDRFIL 132

Query: 217 IRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
               +              G    +     +         C                   
Sbjct: 133 TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH------------- 179

Query: 273 LPAVTITPSEYVSVRPGEPLTL 294
                      V   P + L +
Sbjct: 180 --------ILQVWSEPSDLLEI 193

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGE--TLIINGITKA 150
            + + A EG+  T++C+ +   A ++W K  +  L           G    L I+ ++ A
Sbjct: 15  LKTKEASEGATATLQCELS-KVAPVEWKKGPET-LRDGGRYSLKQDGTRCELQIHDLSVA 72

Query: 151 DEGVYICSIQNAQG 164
           D G Y C     + 
Sbjct: 73  DAGEYSCMCGQERT 86

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
           PA      +      G   TL+CE +   +  V W K    +    R +L++D       
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE-- 63

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
             I  +  +DAG+Y C+     G E    T+ V   P
Sbjct: 64  LQIHDLSVADAGEYSCM----CGQERTSATLTVRALP 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
            R       ++    G  A +QC L          W +     + G    + Q+     L
Sbjct: 9   ARF-TQDLKTKEASEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
           + ++++  D G+Y+C+     G+E  +A + V  LPA     S 
Sbjct: 65  QIHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEGSG 104

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 39/259 (15%), Positives = 69/259 (26%), Gaps = 44/259 (16%)

Query: 93  EVQVT--PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP----------PNMIA 138
           E+QV    +  S   G    + C   S  P   I+W +                 P +  
Sbjct: 3   ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTT 62

Query: 139 GE----------TLIINGITKADEGVYICSIQNAQGNVFQDY--ASIQVDKREMPRIRIH 186
                       ++ I+ IT AD G Y C          +    A  ++  R  P   + 
Sbjct: 63  VSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVV 122

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDN---DGKFGPDVEV----YQELGVL 238
              +            C      P   T  W +  N   D +   D       Y      
Sbjct: 123 SGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTA 182

Query: 239 RFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
           +          +  C   +        +   N    +   P + +T      VR    + 
Sbjct: 183 KVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQVN 239

Query: 294 LECEATG-RPMP-TVSWVK 310
           + C+     P    ++W++
Sbjct: 240 VTCQVRKFYPQRLQLTWLE 258

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 26/185 (14%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV----EVYQELG 236
           P +   P        G    ++C         TQ   R   + K  P +    +   + G
Sbjct: 6   PTLWAEP--GSVITQGSPVTLRCQG----GQETQ-EYRLYREKKTAPWITRIPQELVKKG 58

Query: 237 VLRFNNIATGDEGKYTCIAENSAG------KEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
                +I     G+Y C   +           +          P ++  PS    V  G 
Sbjct: 59  QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP--VVNSGG 116

Query: 291 PLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
            +TL+C+ +          K     +    +        +SRA++++  V  S    Y+C
Sbjct: 117 NVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARG-SSRAIFSVGPVSPSRRWWYRC 174

Query: 346 IGKNS 350
              +S
Sbjct: 175 YAYDS 179

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
            +GS VT+ C+    +   +  ++        ++P  ++      I  IT    G Y C 
Sbjct: 17  TQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY 76

Query: 159 IQNAQGNVFQ--DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
             +      +  D   + V    + P +   P  S     G    +QC  ++        
Sbjct: 77  YGSDTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQC--DSQVAFDGFI 132

Query: 216 WIRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTC 253
             +   D             G    +     ++      Y C
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 30/149 (20%)

Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
            LP  T+   P   ++   G P+TL C+   +        +    AP+       EL  +
Sbjct: 2   HLPKPTLWAEPGSVIT--QGSPVTLRCQGG-QETQEYRLYREKKTAPWITR-IPQELVKK 57

Query: 328 AVYTIASVRESDAGQYKCI-GKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDGD 384
             + I S+     G+Y+C  G ++AG  E    + + V        +S +P   +     
Sbjct: 58  GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS--- 114

Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPP 413
                           G N ++ C  +  
Sbjct: 115 ----------------GGNVTLQCDSQVA 127

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSRAV 329
               +TP    +V  G+ + L+CE +        W K    +   DR  + +     +  
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHK-- 62

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
             IA+    D G Y       A        V V   P  G
Sbjct: 63  LVIANALTEDEGDYVFA--PDAYNVTLPAKVHVISGPSSG 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITK 149
              Q+   G ++ ++C+ S +     KW+K+    +  +    +  +     L+I     
Sbjct: 14  LTDQTVNLGKEICLKCEISENI--PGKWTKNGLP-VQESDRLKVVQKGRIHKLVIANALT 70

Query: 150 ADEGVYICSIQNAQGN 165
            DEG Y+ +       
Sbjct: 71  EDEGDYVFAPDAYNVT 86

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIA 244
            QT  +G    ++C + +        W +   +G        ++V Q+  +  L   N  
Sbjct: 16  DQTVNLGKEICLKCEI-SENIPGK--WTK---NGLPVQESDRLKVVQKGRIHKLVIANAL 69

Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
           T DEG Y    +       + A +HV++ P+
Sbjct: 70  TEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
            +     EG   T+ C  +  +A +KW   N   L P     +  E     L++  +   
Sbjct: 15  LKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV-LRPGDKYSLRQEGAMLELVVRNLRPQ 73

Query: 151 DEGVYICSIQNAQ 163
           D G Y CS  +  
Sbjct: 74  DSGRYSCSFGDQT 86

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSRAVYTIASVRESD 339
           + V  G   TL C  +    P V W      + P D+ +L ++      V  + ++R  D
Sbjct: 18  LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV--VRNLRPQD 74

Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPE 367
           +G+Y C    S G +    T+ V   P 
Sbjct: 75  SGRYSC----SFGDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
            R +         + G  A ++CVL +   +P   W   +N  + G    + QE  +  L
Sbjct: 9   VRFQEAL-KDLEVLEGGAATLRCVL-SSVAAPV-KWCYGNNVLRPGDKYSLRQEGAMLEL 65

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
              N+   D G+Y+C    S G +  +A + V  LP+
Sbjct: 66  VVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 17/171 (9%)

Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
           + + P            ++ C        P    +    +      + + ++     +  
Sbjct: 5   VHVRP-KKLAVEPKGSLEVNCS--TTCNQPEVGGLETSLNK-----ILLDEQAQWKHYLV 56

Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-- 300
                +    C    S  +E MN+ + V   P   I   +   V  G+  T+EC      
Sbjct: 57  SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116

Query: 301 -RPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
                T+   +     +   F +     +  + A +   + RE     + C
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEAT-ATFNSTADREDGHRNFSC 166

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 12/180 (6%)

Query: 90  QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
           +  EV V P++ +      + + C +      +    +            +         
Sbjct: 1   KVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL-ETSLNKILLDEQAQWKHYLVSNI 59

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
           + + V  C      G      +++ V +      + + P       VG    I+C +   
Sbjct: 60  SHDTVLQCHF-TCSGKQESMNSNVSVYQPPRQVILTLQP---TLVAVGKSFTIECRVPTV 115

Query: 209 EPSP--TQTWIRPD---NDGKFGPDVEVYQELGVLRFNNIATGDEGK-YTCIAENSAGKE 262
           EP    T    R +   +   FG      QE      +     D  + ++C+A       
Sbjct: 116 EPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR 175

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN--MIAGE----T 141
                  V P      EG      C+        + W KD++E       M         
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           L IN +   D+G Y    +N+ G   ++   + V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTK-EEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-- 315
                + +A+          I       V  G+     C       P V+W K       
Sbjct: 466 PQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ 525

Query: 316 DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                +    +    TI  V+  D G+Y    KNS GT+E+++ + V
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD 228
                  D+ E     I          G  A+  C +      P  TW + D + K    
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVK 528

Query: 229 VEVYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
                      L  N +   D+G+YT  A+NS G +    +++V
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 15/107 (14%)

Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVK---YIAPFDRNL---------E 320
             TI  +  +S   G  + L+C  +        V+W +    +A  + +L         +
Sbjct: 4   TGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKD 63

Query: 321 RDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRP 366
           R         T+ S+  +D G+Y C       GT    I + V    
Sbjct: 64  RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 20/104 (19%)

Query: 91  ANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMIAGE------- 140
              ++ T    SA +G  + ++C    +      + W + +Q     N   G        
Sbjct: 4   TGTIETTG-NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFK 62

Query: 141 ---------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
                     L +  +T  D G Y C         +     ++V
Sbjct: 63  DRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 16/112 (14%)

Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDN-------------DGKFGPDV 229
            I    + +   G    +QC L +     TQ  W + D                 F   V
Sbjct: 6   TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65

Query: 230 EVYQELGVLRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITP 280
                LG L   ++   D G+Y C       G      ++ VL         
Sbjct: 66  APGPGLG-LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
                     ++  PG+ +TL C         TV WV        +  R     R +  +
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL-LL 64

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
            SV+  D+G Y C     AG     + + V+  PE
Sbjct: 65  RSVQLHDSGNYSC---YRAGRPAGTVHLLVDVPPE 96

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 34/231 (14%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQ---EQLPPNMIAGETLIINGI 147
             +V     ++  G  VT+ C     + +AT+ W                 G  L++  +
Sbjct: 8   AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSV 67

Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
              D G Y C          +   ++ +     P           F     +++ C    
Sbjct: 68  QLHDSGNYSCYRAG------RPAGTVHLLVDVPP----EEPQLSCFRKSPLSNVVCEWGP 117

Query: 208 GEP--SPTQTWI-----RPDNDGKFGPDVEVYQELGVLR-FNNIATGDEGKYT--CIAEN 257
                  T+  +     +      F    +  QE         +  GD   Y       +
Sbjct: 118 RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVAS 177

Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
           S G +              T      +   P   +T+   A      +V+W
Sbjct: 178 SVGSK---------FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTW 219

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 26/135 (19%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
            +++PS+ V +  G  + + C  +      +       P  +        +R VY +++V
Sbjct: 2   TSVSPSK-VILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKELLLPGNNRKVYELSNV 57

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGE 395
           +E    Q  C      G       + V   PE   ++P P                    
Sbjct: 58  QED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSW------------------ 97

Query: 396 YVYAVGSNASISCSV 410
               VG   ++ C V
Sbjct: 98  --QPVGKQLTLRCQV 110

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 16/177 (9%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSN---DPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
           +  V+P +   P G  V + C ++        I+     +E L P        + N    
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSN---V 57

Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMP-RIRIHPNASQTFIVGDRADIQCVLEAG 208
            ++   +C      G   Q  A   +     P R+ + P       VG +  ++C +E G
Sbjct: 58  QEDSQPMCYSNCPDG---QSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGG 113

Query: 209 EPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK-YTCIAENSAGKE 262
            P    T   +R   + +   +  V +   V     +     G  ++C  E     +
Sbjct: 114 APRAQLTVVLLR--GEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 168

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNL----ERDELTS 326
                  ++ V+V  G    L C        ++ W         FD        R EL  
Sbjct: 6   SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65

Query: 327 RAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
            + +     ++ V  SD GQY C    +   +     + V   P
Sbjct: 66  ASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV-----------LRF 240
           T + G  A + C ++    + +  W  P     +  D +  ++  +           +  
Sbjct: 17  TVVEGGTAILTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
           ++++  DEG+YTC    +   +   AY+ VL +P
Sbjct: 76  SDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE---------------QLPPNMIA 138
               +  +  EG    + C+   + + +++WS   Q+               +L      
Sbjct: 10  FPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH 69

Query: 139 GETLIINGITKADEGVYICSIQ 160
             ++ ++ ++ +DEG Y CS+ 
Sbjct: 70  ELSISVSDVSLSDEGQYTCSLF 91

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 51/213 (23%)

Query: 93  EVQVT-PRQQSAPEGSQVTIECKSND------PSATIKWSKDNQEQLPPNMI-------- 137
           +V++     Q  P    VTI C           S  I W   +        +        
Sbjct: 4   KVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQ 63

Query: 138 ---------------AGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
                          +G+ +L + GI   + G Y C +        +   ++Q++    P
Sbjct: 64  EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTP---LKAQGTVQLEVVASP 120

Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEV--------- 231
             R+     Q  +  +     C      P     TW +         ++           
Sbjct: 121 ASRLLL--DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIK 178

Query: 232 -----YQELGVLRFNNIATGDEGKYTCIAENSA 259
                +     L+ N+        Y C+  +++
Sbjct: 179 NMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHAS 211

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 25/116 (21%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRP-----MPTVSWVKYIAPFDRNL----------- 319
           V +           + +T+ C              ++W      FD+ +           
Sbjct: 5   VEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQE 64

Query: 320 ---ERDELTSR------AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
                  ++        A   +  ++  +AG+Y+C    +    +  + + V   P
Sbjct: 65  AFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP 120

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
           LR   I   + G+Y C    +  K      + V+  PA  +   +             CE
Sbjct: 84  LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ--VGMKENEDKYMCE 141

Query: 298 ATG-RPMP-TVSWVK 310
           ++G  P    ++W K
Sbjct: 142 SSGFYPEAINITWEK 156

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 18/159 (11%), Positives = 39/159 (24%), Gaps = 25/159 (15%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
           +       V  + G    + C+        + W             Y   +  ++  +  
Sbjct: 5   LEGRTKS-VIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESG 63

Query: 325 TSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
            S   Y             + ++ E+D+G Y C         +K+              S
Sbjct: 64  ISPGKYDTYGSTRKNLRMILRNLIENDSGVYYC-ATWDQNYYKKLFGSGTSLVVTDKQGS 122

Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE 411
                      D   +    +      V    +++C  E
Sbjct: 123 ADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 29/187 (15%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----- 235
           P +  HP         +   +QC                  +G F   + +  E      
Sbjct: 9   PSLLAHP--GPLVKSEETVILQC-----WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVS 61

Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSV 286
                 + +     G Y C    +     ++A    L +        P+++  P    +V
Sbjct: 62  KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP--TV 119

Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL---ERDELTSRAVYTIASVRESDAGQY 343
             GE +TL C  +          +     +R L    +   T +A + +     +  G Y
Sbjct: 120 LAGENVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTY 176

Query: 344 KCIGKNS 350
           +C G   
Sbjct: 177 RCFGSFH 183

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 30/148 (20%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR---NLERDELTSRAVY 330
           P++   P   V     E + L+C +           +     D      E  +  S+A +
Sbjct: 9   PSLLAHPGPLVK--SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANF 65

Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-----KVITVAVEHRPEYGPISPRPGADILPDGDE 385
           +I+ + +  AG Y+C G  +    +       + + +    E   +S +PG  +L     
Sbjct: 66  SISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLA---- 121

Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPP 413
                          G N ++SCS    
Sbjct: 122 ---------------GENVTLSCSSRSS 134

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 35/172 (20%)

Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGITKADEGVYI 156
                V ++C S+         ++              + ++     I+ +T+   G Y 
Sbjct: 20  KSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79

Query: 157 CSIQNAQGNVFQ----DYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---- 207
           C               D   I +    E P +   P    T + G+   + C   +    
Sbjct: 80  CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP--GPTVLAGENVTLSCSSRSSYDM 137

Query: 208 ------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
                 GE    +    P  +G F              F        G Y C
Sbjct: 138 YHLSREGEAHERRLPAGPKVNGTF-----------QADFPLGPATHGGTYRC 178

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 20/131 (15%)

Query: 184 RIHPNASQTFIVGDRADIQCVLEA------GEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
            I P  S    +       CVL+          +    W              + +    
Sbjct: 7   YISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS 65

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
           + F +I      + TC        E     I ++              + P +P  L C 
Sbjct: 66  VTFTDI-ASLNIQLTCNILTFGQLEQNVYGITII------------SGLPPEKPKNLSCI 112

Query: 298 ATGRPMPTVSW 308
                     W
Sbjct: 113 VNEGKKMRCEW 123

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P++++ PS+ VS   G+ +TL C    R    V           + E+D+    A ++ A
Sbjct: 6   PSLSLHPSQGVS--LGDTVTLRCHLP-RMAAWVQLWLN-GTLRFDKEKDKEQDAAEFSFA 61

Query: 334 SVRESDAGQYKCIGKNSAGTE 354
                DAG Y+C  + S    
Sbjct: 62  VTNLEDAGTYQCRYQVSEPLW 82

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 35/263 (13%), Positives = 73/263 (27%), Gaps = 40/263 (15%)

Query: 21  TTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLI 80
              P ++        V   V        V  G DA L  +  Y P      +        
Sbjct: 142 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASS------- 194

Query: 81  IICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPS------ATIKWSKDNQEQLPP 134
                 L+P      +  R+Q   +G  +       +          + ++  + ++   
Sbjct: 195 ------LAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWG 248

Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
                 T  +  +    EG Y+ +I            ++++   + P++ + P       
Sbjct: 249 PWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG---QVTLELAVYKPPKVSLMPATLARAA 305

Query: 195 VGD-RADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEV--------------YQELGV 237
            G+   ++ C++    PS      W      G      E                   G 
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365

Query: 238 LRFNNIATGDEG-KYTCIAENSA 259
           L+   + T   G +Y C   + +
Sbjct: 366 LQPPPVTTEQHGARYACRIHHPS 388

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE-PLTLEC 296
                +    EG Y         +  +   + V   P V++ P+      PGE P  L C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315

Query: 297 EATG---RPMPTVSWVK 310
             +         V W  
Sbjct: 316 LVSHFYPSGGLEVEWEL 332

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A Length = 106

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEAT-----------GRPMPTVSWVKYIAPFDRNLERD 322
           P+++  P   +    G  +T  C               R     +            +  
Sbjct: 10  PSISAEPGTVIP--LGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDV--------SQAS 59

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
              S A + I SV E +AG Y+CI        E+
Sbjct: 60  PSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQ 93

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 34/278 (12%), Positives = 63/278 (22%), Gaps = 45/278 (16%)

Query: 98  PRQQSAPEGSQVTIECKSND---PSATIKWSKDNQEQL-----PPNMIAGET------LI 143
                      + + C  +     +  I W +D Q              GE       L 
Sbjct: 16  SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT 75

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
           ++      +  Y C +                         +   +     +     I C
Sbjct: 76  LSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135

Query: 204 VLEAGEPSP---TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT--------GDEGKYT 252
           ++    PS      TW R  +           ++         +T         +   Y 
Sbjct: 136 LVVDLAPSKGTVQLTWSR-ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQ 194

Query: 253 CIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL-----TLECEATG-RPMP-T 305
           C   +      +       + P     P  Y    P  P      TL C      P   +
Sbjct: 195 CRVTHPHLPRALMRSTTKTSGP--RAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDIS 252

Query: 306 VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
           V W          L  +     A ++    R++    +
Sbjct: 253 VQW----------LHNEVQLPDARHSTTQPRKTKGSGF 280

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} Length = 270

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 21/189 (11%), Positives = 45/189 (23%), Gaps = 37/189 (19%)

Query: 75  SFLSLIIICL--AYLSPQANEVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW------ 124
             ++ +         S     ++V   PR     +G +  + C        + W      
Sbjct: 7   DLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKN 66

Query: 125 ------------SKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQGN 165
                           Q  +     + E       +L I      D  +Y+C+       
Sbjct: 67  NEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQ 126

Query: 166 VFQD-------YASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWI 217
             Q             +     P + +   +        +A + C+     P     +W 
Sbjct: 127 DTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 186

Query: 218 RPDNDGKFG 226
               +   G
Sbjct: 187 VNGKEVHSG 195

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 30/115 (26%)

Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVKYIAPFDRNLE------------- 320
            TP E +    GE   L C        +    + W+   A   +  +             
Sbjct: 9   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68

Query: 321 -------RDELTSRAVY------TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                  R   TS  +        + +++ SD G Y+C  K + G   K I + V
Sbjct: 69  YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1 Length = 127

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 30/127 (23%)

Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV--SWVK------------------ 310
           + L A T    E   ++ G+ L ++C+ T     +   +W                    
Sbjct: 1   MELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 60

Query: 311 --YIAPFDRNLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVI------TVA 361
             +     R +  D      +   + +++  D+G Y+C        E  ++       V 
Sbjct: 61  NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC-VIYQPPKEPHMLFDRIRLVVT 119

Query: 362 VEHRPEY 368
           +EH   +
Sbjct: 120 LEHHHHH 126

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 31/114 (27%)

Query: 93  EVQV-TPRQQSAPEGSQVTIECKSNDPSAT------IKWSKDNQEQ-------------- 131
           +V V  P Q     G  VT+ C    P+        + W++  +                
Sbjct: 1   DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60

Query: 132 ----------LPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
                          +   +L + G+   DEG Y C               ++V
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 26/113 (23%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-----VSWVK----------------YIAP 314
           V +     V    G+ +TL C      M       ++W +                  + 
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 315 FDRNLERDELTSRAVY----TIASVRESDAGQYKC-IGKNSAGTEEKVITVAV 362
             R           +      +  +R  D G Y C       G+    I + V
Sbjct: 62  SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R Length = 128

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 32/111 (28%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW-------------------SKDN 128
           PQA E+++ P++  A  G +V + C+     S    W                   S  N
Sbjct: 2   PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 61

Query: 129 QEQLPPNMIAGE------------TLIINGITKADEGVYICSIQNAQGNVF 167
           +      + + +             L +N  +K +EG Y CS+ +     F
Sbjct: 62  KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 112

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 207

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 29/189 (15%)

Query: 94  VQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE----------- 140
            QV   P   S  EG+   + C       +++W + N      ++               
Sbjct: 2   DQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKS 61

Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA- 189
                     TL I      D G Y C+      +   +  + ++   +  ++ + P + 
Sbjct: 62  AFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ 121

Query: 190 ----SQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIA 244
                  FI+ +  ++ C+++   P     +        +F P + +             
Sbjct: 122 PPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQ 181

Query: 245 TGDEGKYTC 253
            GD    TC
Sbjct: 182 YGDSNSVTC 190

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 Length = 120

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKY-----IAPFDR--NLERDELTSR 327
           + I      S+  G+P  LEC        P V+W K      +   DR  + + ++  S 
Sbjct: 13  LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGT-EEKVITVAV 362
            +     V  +D G Y+C     +   E    T+ V
Sbjct: 73  FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 Length = 120

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW--IRPDNDGKFGPDV 229
           +I   +    ++ I   +  + + GD  +++C ++     P  TW  +      K     
Sbjct: 2   NIHGKESCDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ 61

Query: 230 EVYQE-----LGVLRFNNIATGDEGKYTCIAENSAG 260
             ++E       +L F  +   D G Y C A   + 
Sbjct: 62  TSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN 97

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM---PTVSW---------VKYIAPFDRNLE 320
              V +   + VSV  G+   +  +  G+ +   PT+ W          K  A F     
Sbjct: 11  PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70

Query: 321 RDELTSRAVY--TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            +  ++       I  V   D G Y+   K     +     + VE
Sbjct: 71  HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-----YQELGV---- 237
             + +T + G    ++C ++      +  W  P     +  +         Q +      
Sbjct: 44  WTSDETVVAGGTVVLKCQVK-DHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHE 102

Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
             +  +N+A  DEG+YTC       +    + + VL +P 
Sbjct: 103 LSISISNVALADEGEYTCSIFTMPVRTAK-SLVTVLGIPQ 141

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 27/102 (26%)

Query: 93  EVQVT-PRQQSAPEGSQVTIEC-----KSNDPSATIKWSKDNQEQLPPNMIAGE------ 140
            + V+ P +    EGS   + C     +      ++ W +D                   
Sbjct: 8   ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRL 67

Query: 141 --------------TLIINGITKADEGVYICSIQ-NAQGNVF 167
                          L I  +   D  +Y+C ++    G   
Sbjct: 68  APLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGT 109

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 92  NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
           +   V         G  V + C +      I W+ D   ++  +   G+TL I      D
Sbjct: 7   DVYVVELDWYPDAPGEMVVLTCDTP-EEDGITWTLDQSSEVLGS---GKTLTIQVKEFGD 62

Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
            G Y C       +      S+ +  ++   I             ++  ++C  +     
Sbjct: 63  AGQYTCHKGGEVLS-----HSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGR 117

Query: 212 PTQTWIRPDN 221
            T  W+   +
Sbjct: 118 FTCWWLTTIS 127

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 20/144 (13%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
              V +   ++    PGE + L C+        ++W         +   + L S    TI
Sbjct: 5   KKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTL-------DQSSEVLGSGKTLTI 55

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
                 DAGQY C       +     ++ + H+ E G  S     D          P+ +
Sbjct: 56  QVKEFGDAGQYTCHKGGEVLSH----SLLLLHKKEDGIWSTDILKDQKE-------PKNK 104

Query: 393 EGEYVYAVGSNASISCSVEPPRIT 416
                 A   +   +C       T
Sbjct: 105 TFLRCEAKNYSGRFTCWWLTTIST 128

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} Length = 166

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 32/111 (28%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW-------------------SKDN 128
           PQA E+++ P++  A  G +V + C+     S    W                   S  N
Sbjct: 7   PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 66

Query: 129 QEQLPPNMIAGE------------TLIINGITKADEGVYICSIQNAQGNVF 167
           +      + + +             L +N  +K +EG Y CS+ +     F
Sbjct: 67  KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 117

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus} Length = 102

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
           +LP +TI    S  +S   G  +T+ C  +       + V+             +   + 
Sbjct: 6   SLPDITIFPNSSLMIS--QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTE 62

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK 356
             + I  V E+  G Y CI        E+
Sbjct: 63  DEFEIGPVNETITGHYSCIYSKGITWSER 91

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKADEG 153
            RQ     G    ++C      A + W   N      +    ++  + L+I  +++ D G
Sbjct: 540 YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599

Query: 154 VYIC--SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
           VY C    +     VFQ  A   ++ + +P+  + P  S     G R   + ++ + +  
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHH 659

Query: 212 PTQ 214
              
Sbjct: 660 HHH 662

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 27/112 (24%)

Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVK---------YIAPFDRNLERD-E 323
           I P   +    G+   L C          M  V W +         Y    D++ E+  E
Sbjct: 10  IGPGHPIRALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68

Query: 324 LTSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
              R                I +VR SD G Y C  ++ +  EE  + + VE
Sbjct: 69  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 30/117 (25%)

Query: 93  EVQVTPRQQSAPEGSQVTIEC----KSNDPSATIKWSKDNQEQLPPNMIAGE-------- 140
               TP   +      V I+C            +KW   +        +           
Sbjct: 3   PTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQA 62

Query: 141 ----------------TLIINGITKADEGVYICSI--QNAQGNVFQDYASIQVDKRE 179
                           +L IN +   D   Y C +  Q   GN       I++  R+
Sbjct: 63  KYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A Length = 206

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 32/217 (14%), Positives = 61/217 (28%), Gaps = 36/217 (16%)

Query: 94  VQVT-PRQQSAPEGSQVTIECKSNDPSAT-----------------IKWSKDNQEQLPPN 135
           ++ T P    + E   V + C  +  S T                 I     N      +
Sbjct: 1   MKTTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMAS 60

Query: 136 MIAGE-----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS 190
           +   E     TLI++  T  D  VY C +  A G  +      Q     +     +P+ +
Sbjct: 61  LAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPA 120

Query: 191 --QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
             Q           C+    +     +  +  +       V   + +     + +A  ++
Sbjct: 121 VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNK 180

Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS 285
             + C    +              +P  T  PS   S
Sbjct: 181 SDFACANAFNNS-----------IIPEDTFFPSPESS 206

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus} Length = 118

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
           +LP +TI    S  +S   G  +T+ C  +       + V+             +   + 
Sbjct: 6   SLPDITIFPNSSLMIS--QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTE 62

Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK 356
             + I  V E+  G Y CI        E+
Sbjct: 63  DEFEIGPVNETITGHYSCIYSKGITWSER 91

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 30/186 (16%)

Query: 94  VQVT--PRQQSAPEGSQVTIECK-SNDPSATIKW---------------SKDNQEQLPPN 135
           + V   P+     EG      C   +     + W               + +  E+    
Sbjct: 1   LNVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGR 60

Query: 136 MIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH-P 187
           + A          L I G    D   Y+C+        F    S+ V    +P I+   P
Sbjct: 61  ISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTV----IPNIQNPDP 116

Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247
              Q           C+    +     +  +  +       V   + +     + +A  +
Sbjct: 117 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSN 176

Query: 248 EGKYTC 253
           +  + C
Sbjct: 177 KSDFAC 182

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} Length = 135

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 19/129 (14%), Positives = 34/129 (26%), Gaps = 29/129 (22%)

Query: 40  VSAENHEVTVYEGGDAELKCNTYYAPG------RWMWLNFYSFLSLIIICLA-YLSPQAN 92
           V   + EV V+ GG  EL C+   A         W+        + +      +      
Sbjct: 7   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 66

Query: 93  EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
            V+    ++S  +            P+                      L +  +   D 
Sbjct: 67  FVESDSYKESFGDFLGRASVANLAAPT----------------------LRLTHVHPQDG 104

Query: 153 GVYICSIQN 161
           G Y C +  
Sbjct: 105 GRYWCQVAQ 113

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} Length = 256

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 19/89 (21%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRN------ 318
               P   V+V  G  L L C+ +    P + W                  D        
Sbjct: 5   SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNG 64

Query: 319 --LERDELTSRAVYTIASVRESDAGQYKC 345
              E  +  S      ASV  SD+  Y C
Sbjct: 65  FEAEFSKSDSSFHLRKASVHRSDSAVYFC 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	471
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	100.0
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.98
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.98
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.96
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.95
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.95
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.95
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.94
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.93
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.92
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.91
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.91
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.9
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.9
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.9
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.9
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.89
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.89
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.89
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.89
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.88
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.87
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.87
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.87
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.87
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.87
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.87
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.86
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.86
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.86
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.86
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.86
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.86
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.86
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.86
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.86
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.86
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.86
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.86
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.86
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.85
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.85
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.85
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.85
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.85
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.85
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.84
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.84
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.84
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.84
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.84
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.84
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.84
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.84
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.84
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.83
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.83
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.83
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.82
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.82
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.82
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.82
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.81
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.81
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.81
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.81
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.81
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.81
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.81
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.81
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.81
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.81
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.8
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.79
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.79
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.79
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.78
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.78
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.78
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.78
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.78
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.78
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.78
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.78
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.78
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.77
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.77
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.77
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.77
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.77
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.77
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.77
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.77
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.77
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.77
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.77
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.76
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.76
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.76
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.76
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.76
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.76
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.76
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.76
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.76
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.76
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.75
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.75
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.75
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.75
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.75
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.75
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.75
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.75
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.75
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.75
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.75
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.75
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.74
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.74
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.74
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.74
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.74
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.74
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.74
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.74
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.74
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.74
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.74
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.74
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.74
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.73
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.73
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.73
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.73
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.73
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.73
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.73
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.73
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.73
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.73
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.73
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.72
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.72
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.72
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.72
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.72
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.71
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.71
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.71
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.71
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.71
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.71
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.71
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.71
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.7
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.7
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.7
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.7
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.7
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.7
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.7
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.69
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.69
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.69
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.69
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.69
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.69
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.69
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.69
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.69
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.68
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.68
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.68
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.68
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.68
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.68
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.67
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.67
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.67
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.67
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.67
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.66
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.66
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.66
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.66
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.66
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.66
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.66
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.65
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.65
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.65
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.65
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.65
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.64
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.64
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.64
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.63
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.63
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.63
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.63
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.62
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.62
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.62
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.61
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.61
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.61
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.6
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.58
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.58
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.58
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.58
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.58
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.58
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.58
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.57
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.57
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.56
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.56
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.55
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.55
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.54
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.54
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.54
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.53
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.52
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.52
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.52
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.52
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.51
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.51
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.51
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.5
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.5
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.5
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.5
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.49
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.49
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.49
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.48
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.48
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.48
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.47
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.47
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.47
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.46
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.46
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.46
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.45
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.44
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.43
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.42
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.42
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.42
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.41
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.41
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.41
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.41
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.41
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.4
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.4
1he7_A	126	High affinity nerve growth factor receptor; transf	99.4
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.4
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.4
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.38
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.38
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.38
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.38
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.38
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.37
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.37
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.37
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.37
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.37
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.37
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.37
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.36
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.36
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.35
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.35
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.35
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.35
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.35
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.35
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.34
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.34
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.34
2ens_A	96	Advanced glycosylation END product-specific recept	99.34
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.33
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.33
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.33
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.33
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.32
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.32
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.31
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.31
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.31
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.31
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.31
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.31
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.3
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.3
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.29
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.29
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.29
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.29
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.28
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.28
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.28
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.28
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.28
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.27
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.27
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.26
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.26
1he7_A	126	High affinity nerve growth factor receptor; transf	99.25
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.24
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.24
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.24
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.24
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.24
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.23
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.23
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.23
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.23
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.22
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.22
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.22

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3.5e-49  Score=398.18  Aligned_cols=427  Identities=22%  Similarity=0.327  Sum_probs=329.9

Q ss_pred             cceeeeccceEEEEecCcEEEEEEeee-CCccEEEeccchhhh--------------------------heeeeeeeec-
Q psy17058         37 TQFVSAENHEVTVYEGGDAELKCNTYY-APGRWMWLNFYSFLS--------------------------LIIICLAYLS-   88 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~~w~~~~~~~~--------------------------~~~~c~~~~~-   88 (471)
                      ++.+...++++.+.+|+.++|.|.+.. +.+.+.|++++..+.                          ..|.|.+... 
T Consensus         5 pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   84 (570)
T 3b43_A            5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV   84 (570)
T ss_dssp             CCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCC
Confidence            455667788999999999999999984 667999998754331                          1367876521 


Q ss_pred             --------------CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcC
Q psy17058         89 --------------PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIING  146 (471)
Q Consensus        89 --------------~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~  146 (471)
                                    ..+|.+...+.+..+.+|+++.|.|. .+.|.+.+.|+|+ +..+.....       ....|.|.+
T Consensus        85 g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~  163 (570)
T 3b43_A           85 GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD-GELLKDDANLQTSFIHNVATLQILQ  163 (570)
T ss_dssp             EEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEET-TEECCCCSSEEEEEETTEEEEEESS
T ss_pred             ceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEEC-CEECcCCCCEEEEEECCEEEEEECc
Confidence                          23555655666788889999999999 8888899999999 666543321       346899999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF  225 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~  225 (471)
                      ++.+|+|.|+|.|.|..|. ....+.+.|.... +|.+...+ ....+.+|+.++|.|.+ .+.|.+.++|+|++..+..
T Consensus       164 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~pp~~~~~p-~~~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~  240 (570)
T 3b43_A          164 TDQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRP  240 (570)
T ss_dssp             CCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCEEEECC-CCBCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCT
T ss_pred             CChHHCEEEEEEEEeCCcE-EEEEEEEEEcCCCCCCccccCC-ceeEecCCCeEEEEEEE-EECCCCEEEEEECCEECcC
Confidence            9999999999999998877 5666777776433 44444444 34567899999999999 7888899999999987665


Q ss_pred             CCCceEE--eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCC
Q psy17058        226 GPDVEVY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM  303 (471)
Q Consensus       226 ~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~  303 (471)
                      ..++.+.  .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.+.........+.+|+.+.|.|.+.|.|.
T Consensus       241 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~  320 (570)
T 3b43_A          241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE  320 (570)
T ss_dssp             TSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSS
T ss_pred             CCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCC
Confidence            5554443  23467999999999999999999999999888999999998887665444446789999999999999999


Q ss_pred             CeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCcccc
Q psy17058        304 PTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP  381 (471)
Q Consensus       304 ~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~  381 (471)
                      +.+.|++++..+....  ..........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.+.....   .....
T Consensus       321 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~---~~~~~  397 (570)
T 3b43_A          321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH---PVETL  397 (570)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCC---CEEEC
T ss_pred             CEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCC---ceeec
Confidence            9999999998876432  222234567899999999999999999999999999999999998875432211   11111


Q ss_pred             CCC----------------cc---cCCCCCCC------------ceEEEcCCcce--EEe----------------eecC
Q psy17058        382 DGD----------------EY---YRPEPEEG------------EYVYAVGSNAS--ISC----------------SVEP  412 (471)
Q Consensus       382 ~~~----------------~w---~~~~~~~~------------~~~~~~~~~~~--y~c----------------~~~~  412 (471)
                      .|.                +|   +.++..+.            +.|.++..+|+  |+|                +..+
T Consensus       398 ~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  477 (570)
T 3b43_A          398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP  477 (570)
T ss_dssp             TTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC
T ss_pred             CCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccC
Confidence            222                77   33333222            25778888888  999                6679


Q ss_pred             CeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCC-CCce--EE----ecCeEEECCCC
Q psy17058        413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYF-PSHV--VE----YNGELRLGPHK  470 (471)
Q Consensus       413 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l-~~~~--~~----~~~~l~i~~~~  470 (471)
                      |.|...+.+..+.+|+.+.|.|.+.|.|++.|+|+|||..+ ..+.  .+    ..++|.|.+++
T Consensus       478 P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  542 (570)
T 3b43_A          478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE  542 (570)
T ss_dssp             CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCC
T ss_pred             CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCC
Confidence            99999888889999999999999999999999999998544 3322  22    23578888765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.2e-43  Score=361.56  Aligned_cols=433  Identities=18%  Similarity=0.277  Sum_probs=308.9

Q ss_pred             CCCCCeeeecccc-------cccccccccccceeeeccceEEEEecCcEEEEEEeeeCCccEEEeccchhhh--------
Q psy17058         14 SNQGNALTTTPSR-------QETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLS--------   78 (471)
Q Consensus        14 ~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~w~~~~~~~~--------   78 (471)
                      +..|.+.+.....       ...+.+....+...........+.+|+.++|.|.+..+...+.|++++..+.        
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~p~~~v~W~~~g~~l~~~~~~~~~  160 (642)
T 1e07_A           81 NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLS  160 (642)
T ss_pred             ccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCCCCeeEEEEECCeECCCCCceEEc
Confidence            5667777765332       1223343322233333344567899999999999998888999987543221        


Q ss_pred             ----------------heeeeeeeec--------------CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeC
Q psy17058         79 ----------------LIIICLAYLS--------------PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKD  127 (471)
Q Consensus        79 ----------------~~~~c~~~~~--------------~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~  127 (471)
                                      ..|.|.+...              ..|+.+.+.|....+.+|+.+.|.|. .+.|.+.+.|+++
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~  240 (642)
T 1e07_A          161 NGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN  240 (642)
T ss_pred             CCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEEC
Confidence                            2367877532              12333445566778999999999999 8899999999999


Q ss_pred             CCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccC-CeeeecCCCceeEEcCCeEEEEEEcc
Q psy17058        128 NQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLE  206 (471)
Q Consensus       128 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-p~~~~~~~~~~~v~~g~~~~L~C~~~  206 (471)
                       +..+.    ....|.|.+++.+|+|.|+|.+.|..+. ......+.|.+..+ +...+.......+..|+.++|.|.+ 
T Consensus       241 -g~~i~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~-  313 (642)
T 1e07_A          241 -GTFQQ----STQELFIPNITVNNSGSYTCQAHNSDTG-LNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP-  313 (642)
T ss_pred             -CeEcc----cCCceEEecccccCCeEEEEEEEeCCCc-eEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEEC-
Confidence             65553    3467999999999999999999998776 33333444443332 1222223334455668889999999 


Q ss_pred             CCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCceeeCCCccEE
Q psy17058        207 AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVS  285 (471)
Q Consensus       207 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~  285 (471)
                      .+.| +.+.|++++..+....++.+...++.|.|.++..+|+|.|+|.+.|..+. .+..+.|.|..+|...........
T Consensus       314 ~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~  392 (642)
T 1e07_A          314 EIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY  392 (642)
T ss_pred             CCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceE
Confidence            5555 69999999988777777766666788999999999999999999998876 356688888877764333334567


Q ss_pred             ecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE--EEEEEe
Q psy17058        286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV--ITVAVE  363 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~  363 (471)
                      +.+|+.+.|.|.+.|+|.+.+.|+++|..+.         ....|.|.++..+|+|.|+|.|.|..|....+  +.|.|.
T Consensus       393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~  463 (642)
T 1e07_A          393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ---------HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS  463 (642)
T ss_pred             ecCCCcEEEEEEcCccCCCeEEEEECCEEcC---------CCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEe
Confidence            8899999999999999999999999987653         23579999999999999999999999877554  555555


Q ss_pred             cCCCCCCCCCCCCCccccCCC---------------cc---cCCCC----------CCCceEEEcCCcce--EEe-----
Q psy17058        364 HRPEYGPISPRPGADILPDGD---------------EY---YRPEP----------EEGEYVYAVGSNAS--ISC-----  408 (471)
Q Consensus       364 ~~p~~~~~~~~~~~~~~~~~~---------------~w---~~~~~----------~~~~~~~~~~~~~~--y~c-----  408 (471)
                      ..+..+.+.... ......|+               .|   +.++.          .+.+.|.++..+|+  |+|     
T Consensus       464 ~~~~~p~i~~~~-~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  542 (642)
T 1e07_A          464 AELPKPSISSNN-SKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNS  542 (642)
T ss_pred             ccCCCceEecCC-ceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcC
Confidence            432111111111 11111222               67   22322          22348889998888  999     


Q ss_pred             ------------ee-cCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEEecCeEEECCC
Q psy17058        409 ------------SV-EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPH  469 (471)
Q Consensus       409 ------------~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~~~~l~i~~~  469 (471)
                                  +. .|+.+...+.+..+.+|+.+.|.|.+.|.|+|.|+|+|||.+|..+     ++|.|.++
T Consensus       543 ~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~-----~~L~i~~~  611 (642)
T 1e07_A          543 VSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----QVLFIAKI  611 (642)
T ss_pred             CCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC-----ceEEECcc
Confidence                        22 2444666677788999999999999999999999999999988653     45666554

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3e-44  Score=362.17  Aligned_cols=376  Identities=20%  Similarity=0.348  Sum_probs=288.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..||.|...+..+.+.+|+++.|.|. .+.|.+.+.|+|+ +..+.....       ...+|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE   81 (570)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECS-SSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEEC-CEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEE
Confidence            35788877788899999999999999 8889999999999 555543221       34689999999999999999999


Q ss_pred             ecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE--EeeeceE
Q psy17058        161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--YQELGVL  238 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~l  238 (471)
                      |..|. ......+.|.....|...........+.+|+.++|.|.+ .+.|.+.++|+|++..+....+...  ......|
T Consensus        82 N~~g~-~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L  159 (570)
T 3b43_A           82 NSVGA-VASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL  159 (570)
T ss_dssp             ETTEE-EEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEE-ESSSSCEEEEEETTEECCCCSSEEEEEETTEEEE
T ss_pred             eCCce-EEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEE-ccCCCCEEEEEECCEECcCCCCEEEEEECCEEEE
Confidence            98876 555556666533223233333445567789999999999 7788899999999987655544332  2224679


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccC
Q psy17058        239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF  315 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~  315 (471)
                      .|.++..+|+|.|+|.|.|..|....+..|.|..   +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+
T Consensus       160 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p-~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i  238 (570)
T 3b43_A          160 QILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKCHVTGTAPIKITWAKDNREI  238 (570)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECC-CCBCCBSBSCEEEEEEEESSSCCEEEEEETTEEC
T ss_pred             EECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCC-ceeEecCCCeEEEEEEEEECCCCEEEEEECCEEC
Confidence            9999999999999999999988887777777763   45555444 3456889999999999999999999999999887


Q ss_pred             CCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCC---------
Q psy17058        316 DRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD---------  384 (471)
Q Consensus       316 ~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~---------  384 (471)
                      ....  ..........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.+......  ......|+         
T Consensus       239 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~--~~~v~~g~~~~l~C~~~  316 (570)
T 3b43_A          239 RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEP--SRIVKQDEHTRYECKIG  316 (570)
T ss_dssp             CTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCS--BCCEESSCEEEEEEEEE
T ss_pred             cCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCC--ccEEcCCCcEEEEEEEe
Confidence            5432  2222345678999999999999999999999999999999999888754322111  01111222         


Q ss_pred             -------cc---cCCCCCC------------CceEEEcCCcce--EEe----------------eecCCeeEEcCCeeee
Q psy17058        385 -------EY---YRPEPEE------------GEYVYAVGSNAS--ISC----------------SVEPPRITLRPVRQTV  424 (471)
Q Consensus       385 -------~w---~~~~~~~------------~~~~~~~~~~~~--y~c----------------~~~~p~~~~~~~~~~~  424 (471)
                             .|   +.++..+            .+.|.++..+|+  |+|                +..+|.|...+....+
T Consensus       317 g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~  396 (570)
T 3b43_A          317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET  396 (570)
T ss_dssp             SSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEE
T ss_pred             eCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceee
Confidence                   77   2222222            136788888888  999                6778999888888889


Q ss_pred             eCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ec--CeEEECCCC
Q psy17058        425 KPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YN--GELRLGPHK  470 (471)
Q Consensus       425 ~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~--~~l~i~~~~  470 (471)
                      .+|+.+.|.|.+.|.|+|.|+|+|||.+|..+.++    .+  ++|.|.+++
T Consensus       397 ~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~  448 (570)
T 3b43_A          397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD  448 (570)
T ss_dssp             CTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCC
T ss_pred             cCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCC
Confidence            99999999999999999999999999999765433    22  478888775

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.4e-42  Score=331.20  Aligned_cols=330  Identities=21%  Similarity=0.337  Sum_probs=251.2

Q ss_pred             CCCCcEEEcCCceee---cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCC-CCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSA---PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-----AGETLIINGI-TKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v---~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v-~~~D~G~Y~C~  158 (471)
                      ..+|.|..+|.+..+   .+|+.+.|.|. .+.|.+.++|+|+ +..+.....     .++.|.|.++ +.+|+|.|+|.
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~   81 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLN-GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI   81 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEET-TEECCC----CEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEEC-CEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEE
Confidence            346778888887766   68999999999 8899999999999 665543211     4567878776 78999999999


Q ss_pred             EEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceE
Q psy17058        159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL  238 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l  238 (471)
                      |.|..|...+....+.+..  .+.+.........+.+|+.+.|.|....+.|.+.+.|++++..+....+.......+.|
T Consensus        82 A~N~~G~~~s~~~~l~v~~--~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L  159 (384)
T 3kld_A           82 ATNSFGTIVSREAKLQFAY--LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNL  159 (384)
T ss_dssp             EEETTEEEECCCEEEEEEE--ECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCE
T ss_pred             EEcCcccEEecceEEEEec--ccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcE
Confidence            9998876444455555542  22222333345678899999999987445677899999998764444443334446689


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCceEEE---EEEEEE-------eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEE
Q psy17058        239 RFNNIATGDEGKYTCIAENSAGKEVMN---AYIHVL-------TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW  308 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~---~~l~V~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W  308 (471)
                      .|.+++.+|+|.|+|.+.|..+.....   ..+.+.       ..|.+.+.......+.+|+++.|.|.+.|.|.|.+.|
T Consensus       160 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W  239 (384)
T 3kld_A          160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILW  239 (384)
T ss_dssp             EESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEE
T ss_pred             EEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEE
Confidence            999999999999999999987654321   122221       2344444444456788999999999999999999999


Q ss_pred             EeCC-ccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCccc
Q psy17058        309 VKYI-APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY  387 (471)
Q Consensus       309 ~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~  387 (471)
                      ++++ ..+.....  .....+.|.|.+++.+|+|.|+|.|.|..|.......|.|..+                      
T Consensus       240 ~k~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~----------------------  295 (384)
T 3kld_A          240 RRADGKPIARKAR--RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ----------------------  295 (384)
T ss_dssp             EETTCCCCCTTCE--ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE----------------------
T ss_pred             EeCCCccccccce--ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC----------------------
Confidence            9954 44433222  2345678999999999999999999999999998899988764                      


Q ss_pred             CCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCce--EEecCeEE
Q psy17058        388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHV--VEYNGELR  465 (471)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~l~  465 (471)
                                               |.+...+.+..+.+|+.+.|.|.+.|.|.|.|+|+|||.+|..+.  ...+++|.
T Consensus       296 -------------------------P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~  350 (384)
T 3kld_A          296 -------------------------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLN  350 (384)
T ss_dssp             -------------------------EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEE
T ss_pred             -------------------------CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEE
Confidence                                     677777878899999999999999999999999999999986654  34678999


Q ss_pred             ECCCC
Q psy17058        466 LGPHK  470 (471)
Q Consensus       466 i~~~~  470 (471)
                      |.+++
T Consensus       351 i~~v~  355 (384)
T 3kld_A          351 ITIVN  355 (384)
T ss_dssp             ESSCC
T ss_pred             EeecC
Confidence            98875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-41  Score=356.69  Aligned_cols=379  Identities=22%  Similarity=0.387  Sum_probs=298.8

Q ss_pred             cceeeeccceEEEEecCcEEEEEEee-eCCccEEEeccchhhh----------------heeeeeeee------------
Q psy17058         37 TQFVSAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFLS----------------LIIICLAYL------------   87 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~w~~~~~~~~----------------~~~~c~~~~------------   87 (471)
                      ++.+...+....+.+|+.++|.|.+. .+...+.|++++..+.                ..|.|.+..            
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  422 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK  422 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEE
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEE
Confidence            34455566788999999999999998 5667899998765432                247887652            


Q ss_pred             ---cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------------cCcEEEEcCCCCCC
Q psy17058         88 ---SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------------AGETLIINGITKAD  151 (471)
Q Consensus        88 ---~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------------~~~~L~i~~v~~~D  151 (471)
                         ...+|.+...+....+.+|+.+.|.|. .+.|.+.+.|+++ +..+.....            ....|.|.+++.+|
T Consensus       423 v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  501 (816)
T 3dmk_A          423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND  501 (816)
T ss_dssp             CCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEET-TEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTT
T ss_pred             EccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEEC-CEECCCCCCcccccEEecCCCcEEEEEEeeccccC
Confidence               145777877788889999999999999 8899999999999 555543221            12369999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV  231 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  231 (471)
                      +|.|+|.|.|..+. ......+.|.  .+|.+  .......+.+|+.++|.|.+ .+.|.+.+.|++++..+....+...
T Consensus       502 ~G~Y~C~a~n~~g~-~~~~~~l~V~--~~p~~--~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~~~l~~~~~~~~  575 (816)
T 3dmk_A          502 GGLYKCIAKSKVGV-AEHSAKLNVY--GLPYI--RQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALPINRKQKV  575 (816)
T ss_dssp             CEEEEEEEEETTEE-EEEEEEEEEC--SSCEE--CCCCCEEEETTCCEEEECCE-ECSSEEEEEEEETTEESCCSTTEEE
T ss_pred             CEEEEEEEEECCCe-EEEEEEEEEe--cCCee--EccCCeEEecCCeEEEEEEe-cCCCCCEEEEEECCeEcccCCceEE
Confidence            99999999998876 5555555554  55543  23344578899999999999 7788889999999988766655554


Q ss_pred             EeeeceEEEeccC-CCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEE
Q psy17058        232 YQELGVLRFNNIA-TGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSW  308 (471)
Q Consensus       232 ~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W  308 (471)
                      .. ++.|.|.++. ..|+|.|+|.+.|..|. .+..+.+.|..+|.+.........+.+|+.+.|.|.+.+.+.+ .+.|
T Consensus       576 ~~-~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W  654 (816)
T 3dmk_A          576 FP-NGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDW  654 (816)
T ss_dssp             CT-TSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEE
T ss_pred             ec-CCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEE
Confidence            44 6789999998 58999999999998875 4557788888887765444344567899999999999876655 9999


Q ss_pred             EeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCc
Q psy17058        309 VKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE  385 (471)
Q Consensus       309 ~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~  385 (471)
                      ++++..+.....   .......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..                     
T Consensus       655 ~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~---------------------  713 (816)
T 3dmk_A          655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---------------------  713 (816)
T ss_dssp             EETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE---------------------
T ss_pred             EECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe---------------------
Confidence            999988753321   11223567899999999999999999999999999999998876                     


Q ss_pred             ccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCc---------
Q psy17058        386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH---------  456 (471)
Q Consensus       386 w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~---------  456 (471)
                                                +|.+...+.+..+.+|+.+.|.|.+.|.|+|.|+|+|+|..+...         
T Consensus       714 --------------------------~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~  767 (816)
T 3dmk_A          714 --------------------------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDN  767 (816)
T ss_dssp             --------------------------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTT
T ss_pred             --------------------------CCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCC
Confidence                                      478888888889999999999999999999999999998765432         


Q ss_pred             eEEecCeEEECCCC
Q psy17058        457 VVEYNGELRLGPHK  470 (471)
Q Consensus       457 ~~~~~~~l~i~~~~  470 (471)
                      ....+++|.|.+++
T Consensus       768 ~~~~~~~L~i~~v~  781 (816)
T 3dmk_A          768 IRVEEGTLHVDNIQ  781 (816)
T ss_dssp             EEEETTEEEECSCC
T ss_pred             EEecCCEEEECcCC
Confidence            23467899998875

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=2.5e-41  Score=337.91  Aligned_cols=360  Identities=17%  Similarity=0.280  Sum_probs=272.1

Q ss_pred             ccceeeeccceEEEEecCcEEEEEEeeeCCccEEEeccchhhh------------------heeeeeeee---------c
Q psy17058         36 VTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLS------------------LIIICLAYL---------S   88 (471)
Q Consensus        36 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~w~~~~~~~~------------------~~~~c~~~~---------~   88 (471)
                      .|+.+......+.+.+|+.++|.|.+..   .+.|++....+.                  ..|.|.+..         .
T Consensus        35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~---~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~~l~V  111 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG---FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFV  111 (524)
T ss_dssp             CCCEEESCCSEEECCTTSCEEEEEECTT---EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETTSCEEEEEEEC
T ss_pred             CCCccCCCCceEEEeCCCeEEEEEeCCc---eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecCCcceEEEEEE
Confidence            3445555667899999999999999865   899998664321                  236887732         1


Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCe-EEEEEEEec
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEG-VYICSIQNA  162 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G-~Y~C~~~~~  162 (471)
                      ..++.+...+....+.+|+.+.|.|. .+.+.+.+.|++.++..+.....    ..+.|.|.+++.+|+| .|+|.+.|.
T Consensus       112 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~  191 (524)
T 2ec8_A          112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE  191 (524)
T ss_dssp             CCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC--
T ss_pred             CCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEEC
Confidence            23344446677888999999999999 66666899999954776654322    5678999999999999 999999987


Q ss_pred             CCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCe-EEEEeCCCCC--CcCCCceE-----E
Q psy17058        163 QGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT-QTWIRPDNDG--KFGPDVEV-----Y  232 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~-v~W~~~~~~~--~~~~~~~~-----~  232 (471)
                      .+...+....|.|..  ..+|.+...+. ...+.+|+.++|.|.+ .+.|.+. +.|++++..+  .......+     .
T Consensus       192 ~~~~~s~~~~l~V~~~~~~~p~i~~~~~-~~~v~~G~~v~L~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~  269 (524)
T 2ec8_A          192 GKSVLSEKFILKVRPAFKAVPVVSVSKA-SYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY  269 (524)
T ss_dssp             --CCCCCCEECCEECCCCSCCEEECSCS-EEEEETTSCEEEEEEE-EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCE
T ss_pred             CceEEEEEEEEEEEeCCCCCCcEEecCC-cceEEcCCcEEEEEEE-ecCCCcEEEEEEeCCCCCccccccccccccCCcc
Confidence            665333345555541  24566655544 4578899999999999 5677665 9999999873  22221111     2


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCC--ccEEecCCCcEEEEEEEeecCCCe-EEEE
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS--EYVSVRPGEPLTLECEATGRPMPT-VSWV  309 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~~g~~v~l~C~~~g~p~~~-i~W~  309 (471)
                      ...+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+.  ....+.+|+.+.|.|.+.|+|.+. +.|+
T Consensus       270 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~  349 (524)
T 2ec8_A          270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI  349 (524)
T ss_dssp             EEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEE
T ss_pred             ceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEE
Confidence            2356899999999999999999999999988899999999998876543  356899999999999999999998 9999


Q ss_pred             eCCccCCCccccc-cc------CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccC
Q psy17058        310 KYIAPFDRNLERD-EL------TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD  382 (471)
Q Consensus       310 ~~~~~~~~~~~~~-~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~  382 (471)
                      +++..+....... ..      .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+                 
T Consensus       350 k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~-----------------  412 (524)
T 2ec8_A          350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK-----------------  412 (524)
T ss_dssp             SSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEE-----------------
T ss_pred             ECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecC-----------------
Confidence            9998876443111 11      13579999999999999999999999999999999999764                 


Q ss_pred             CCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCC
Q psy17058        383 GDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYF  453 (471)
Q Consensus       383 ~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l  453 (471)
                                                    |.|...+.   ..+|   .|.|.+.|+|+|.|+|+|||..+
T Consensus       413 ------------------------------P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          413 ------------------------------PEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             ------------------------------EEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred             ------------------------------CeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence                                          67765543   3455   99999999999999999998765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=4e-41  Score=322.79  Aligned_cols=328  Identities=21%  Similarity=0.312  Sum_probs=256.9

Q ss_pred             CCCCcEEEcCCceee---cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc----c-cCcEEEEcCCCC-CCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSA---PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM----I-AGETLIINGITK-ADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v---~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~----~-~~~~L~i~~v~~-~D~G~Y~C~  158 (471)
                      ..+|.|...|.+..+   .+|++++|.|. .+.|.+.+.|+++ +..+....    . .++.|.|.++.. +|+|.|+|.
T Consensus         2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~-g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   80 (382)
T 1cs6_A            2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMN-GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV   80 (382)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEET-TEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEEC-CEECCcCCCccEEeeCCeEEEecccccccCEEEEEE
Confidence            357889999988876   78999999999 7788899999999 55554321    1 467899999997 999999999


Q ss_pred             EEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEEeeec
Q psy17058        159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELG  236 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~  236 (471)
                      +.|..|...+....+.|..  .|.+.........+.+|+.++|.|.+..+.|.+.+.|++++..+..  ..+.......+
T Consensus        81 a~n~~g~~~s~~~~l~v~~--~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  158 (382)
T 1cs6_A           81 ATNARGTVVSREASLRFGF--LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG  158 (382)
T ss_dssp             EEETTEEEECCCEEEEEEE--ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC
T ss_pred             EEcCCcEEEecceEEEeec--cccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCce
Confidence            9998775333345566553  2333333344567889999999999756678899999999876433  22333333356


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEE-----EEEEEEE------eCCceeeCCCccEEecCCCcEEEEEEEeecCCCe
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVM-----NAYIHVL------TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT  305 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-----~~~l~V~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~  305 (471)
                      .|.|.+++.+|+|.|+|.+.|..+....     .+.|.+.      .+|.+.........+.+|+.+.|.|.+.|.|.+.
T Consensus       159 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~  238 (382)
T 1cs6_A          159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ  238 (382)
T ss_dssp             CEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCE
T ss_pred             EEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCE
Confidence            8999999999999999999987653222     2344443      2455555444466889999999999999999999


Q ss_pred             EEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCc
Q psy17058        306 VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE  385 (471)
Q Consensus       306 i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~  385 (471)
                      +.|++++..+...    .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+                    
T Consensus       239 i~W~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~--------------------  294 (382)
T 1cs6_A          239 IKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ--------------------  294 (382)
T ss_dssp             EEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE--------------------
T ss_pred             EEEEECCcccccE----EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecC--------------------
Confidence            9999988776432    2345678999999999999999999999999999999998864                    


Q ss_pred             ccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceE--EecCe
Q psy17058        386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVV--EYNGE  463 (471)
Q Consensus       386 w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~  463 (471)
                                                 |.+...+....+.+|+.+.|.|.+.|.|.+.++|+|||.+|..+.+  ..+++
T Consensus       295 ---------------------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~  347 (382)
T 1cs6_A          295 ---------------------------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE  347 (382)
T ss_dssp             ---------------------------EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTE
T ss_pred             ---------------------------CCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCE
Confidence                                       6777777788899999999999999999999999999999976644  36789


Q ss_pred             EEECCCC
Q psy17058        464 LRLGPHK  470 (471)
Q Consensus       464 l~i~~~~  470 (471)
                      |.|.+++
T Consensus       348 L~i~~v~  354 (382)
T 1cs6_A          348 LRFSKLV  354 (382)
T ss_dssp             EEESSCC
T ss_pred             EEECcCC
Confidence            9998875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.8e-40  Score=320.48  Aligned_cols=332  Identities=21%  Similarity=0.326  Sum_probs=256.8

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCCCCc----c--cCcEEEEcCC-----CCCCCeE
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLPPNM----I--AGETLIINGI-----TKADEGV  154 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~~~~----~--~~~~L~i~~v-----~~~D~G~  154 (471)
                      ......+..+|.++.+.+|+.++|.|. . +.|.+.+.|+|+ +..+....    .  .++.|.|.++     +.+|+|.
T Consensus        18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~-g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~   96 (403)
T 3laf_A           18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKD-GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGL   96 (403)
T ss_dssp             -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEET-TEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEE
T ss_pred             CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEEC-CEECccCCcccEEEecCCcEEEeeeeccCCCCCcceE
Confidence            356677888899999999999999999 4 468889999999 65554221    1  5667888888     6789999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC--CCceEE
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG--PDVEVY  232 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~  232 (471)
                      |+|.+.+..+. ...+..+.+.+..+|.+.. ......+.+|+.++|.|.+ .+.|.+.+.|++++..+...  ......
T Consensus        97 Y~C~~~~~~~~-~~~s~~~~l~v~~p~~~~~-~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~  173 (403)
T 3laf_A           97 YQCEASLGDSG-SIISRTAKVMVAGPLRFLS-QTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVV  173 (403)
T ss_dssp             EEEEEECGGGC-EEECCCEEEEECCCCEECS-CCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEE
T ss_pred             EEEEEEeCCCc-cEEEEEEEEEecCCCcccc-CCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEE
Confidence            99999965433 2223334444445555443 3446678899999999998 67888999999998875321  122222


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCce-----eeCCCccEEecCCCcEEEEEEEeecCCCeE
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAV-----TITPSEYVSVRPGEPLTLECEATGRPMPTV  306 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~-----~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i  306 (471)
                      ...+.|.|.+++.+|+|.|+|.+.|..+. ....+.+.|...|.+     .........+.+|+.+.|.|.+.+.|.+.+
T Consensus       174 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~  253 (403)
T 3laf_A          174 LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF  253 (403)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred             cCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeE
Confidence            33668999999999999999999997765 345577777766542     122334567889999999999999999999


Q ss_pred             EEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcc
Q psy17058        307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY  386 (471)
Q Consensus       307 ~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w  386 (471)
                      .|++++..+..............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+                     
T Consensus       254 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---------------------  312 (403)
T 3laf_A          254 TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP---------------------  312 (403)
T ss_dssp             EEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE---------------------
T ss_pred             EEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC---------------------
Confidence            99999988764433233344578999999999999999999999999999999999764                     


Q ss_pred             cCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE---ecCe
Q psy17058        387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE---YNGE  463 (471)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~  463 (471)
                                                |.+...+....+.+|+.+.|.|.+.|.|.+.++|+|||..+..+..+   .+++
T Consensus       313 --------------------------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~  366 (403)
T 3laf_A          313 --------------------------PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN  366 (403)
T ss_dssp             --------------------------EEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTE
T ss_pred             --------------------------CcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCcc
Confidence                                      68888888888999999999999999999999999999988655432   4678


Q ss_pred             EEECCCC
Q psy17058        464 LRLGPHK  470 (471)
Q Consensus       464 l~i~~~~  470 (471)
                      |.|.+++
T Consensus       367 L~i~~v~  373 (403)
T 3laf_A          367 LRILGVV  373 (403)
T ss_dssp             EEESSCC
T ss_pred             EEEeccc
Confidence            9988765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.3e-39  Score=331.77  Aligned_cols=410  Identities=19%  Similarity=0.252  Sum_probs=289.3

Q ss_pred             eeccceEEEEecCcEEEEEEee-eCCccEEEeccchhh-------------------------------h----------
Q psy17058         41 SAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFL-------------------------------S----------   78 (471)
Q Consensus        41 ~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~w~~~~~~~-------------------------------~----------   78 (471)
                      ...+.++.+.+|+.++|.|... .+...+.|++.....                               .          
T Consensus         3 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~~~D   82 (642)
T 1e07_A            3 TIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQND   82 (642)
T ss_pred             eEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEECCCCccc
Confidence            4456778999999999999965 344578998732110                               0          


Q ss_pred             -heeeeeeeec----------------CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---
Q psy17058         79 -LIIICLAYLS----------------PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---  137 (471)
Q Consensus        79 -~~~~c~~~~~----------------~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---  137 (471)
                       ..|.|.+...                ..+|.+...+ ...+.+|+.+.|.|. .+ |.+.+.|+++ +..+.....   
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~g~~v~l~C~~~~-p~~~v~W~~~-g~~l~~~~~~~~  159 (642)
T 1e07_A           83 TGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN-SKPVEDKDAVAFTCEPET-QDATYLWWVN-NQSLPVSPRLQL  159 (642)
T ss_pred             CcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccC-ceeEecCCcEEEEEECCC-CCeeEEEEEC-CeECCCCCceEE
Confidence             1256765421                2244444432 456889999999999 55 8899999999 555543221   


Q ss_pred             --cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEE
Q psy17058        138 --AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT  215 (471)
Q Consensus       138 --~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~  215 (471)
                        .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|... ++...+.+ ....+.+|+.++|.|.+ .+.|.+.++
T Consensus       160 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~-p~~~~~~~-~~~~~~~G~~~~l~C~~-~g~p~~~i~  236 (642)
T 1e07_A          160 SNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYG-PDAPTISP-LNTSYRSGENLNLSCHA-ASNPPAQYS  236 (642)
T ss_pred             cCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeC-CCCcEEec-CCcccccCCEEEEEEEc-CCCCCcEEE
Confidence              46799999999999999999999987763344455555521 22223333 34467899999999999 889999999


Q ss_pred             EEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE--EEEEEEEEeCC-ceeeCCCccEEecCCCcE
Q psy17058        216 WIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV--MNAYIHVLTLP-AVTITPSEYVSVRPGEPL  292 (471)
Q Consensus       216 W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~~~p-~~~~~~~~~~~~~~g~~v  292 (471)
                      |++++..+.         ....|.|.+++.+|+|.|+|.+.|..+...  ..+.|.|..++ ...+.......+..|+.+
T Consensus       237 W~~~g~~i~---------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v  307 (642)
T 1e07_A          237 WFVNGTFQQ---------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAV  307 (642)
T ss_pred             EEECCeEcc---------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcE
Confidence            999987642         245799999999999999999999887654  34566665532 222222233456668889


Q ss_pred             EEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecCCCCCCC
Q psy17058        293 TLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRPEYGPI  371 (471)
Q Consensus       293 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~  371 (471)
                      .|.|.+.+.| +.+.|++++..+..............|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...|.....
T Consensus       308 ~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~  386 (642)
T 1e07_A          308 ALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTI  386 (642)
T ss_pred             EEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCee
Confidence            9999999876 699999999887644332333456789999999999999999999999875 45688888877644322


Q ss_pred             CCCCCCccccCCC----------------cc---cCCCC-CCCceEEEcCCcce--EEe------------------ee-
Q psy17058        372 SPRPGADILPDGD----------------EY---YRPEP-EEGEYVYAVGSNAS--ISC------------------SV-  410 (471)
Q Consensus       372 ~~~~~~~~~~~~~----------------~w---~~~~~-~~~~~~~~~~~~~~--y~c------------------~~-  410 (471)
                      .+.  ......|+                +|   +.++. ...+.|.++..+|+  |+|                  +. 
T Consensus       387 ~~~--~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~  464 (642)
T 1e07_A          387 SPS--YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA  464 (642)
T ss_pred             cCC--ceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEec
Confidence            221  11112222                77   33333 33458889998888  999                  11 


Q ss_pred             --cCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ecCeEEECCCC
Q psy17058        411 --EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YNGELRLGPHK  470 (471)
Q Consensus       411 --~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~l~i~~~~  470 (471)
                        .+|.+.. +....+.+|+.+.|.|.+.+ |.+.++|+|||.+|..+.++    .+++|.|.+++
T Consensus       465 ~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~  528 (642)
T 1e07_A          465 ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVT  528 (642)
T ss_pred             cCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecC
Confidence              2444443 33467889999999999994 88999999999999776544    35688888765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=323.67  Aligned_cols=369  Identities=15%  Similarity=0.218  Sum_probs=256.6

Q ss_pred             eeccceEEEEecCcEEEEEEeee-CCccEEEeccch--h-----------------------------h---------hh
Q psy17058         41 SAENHEVTVYEGGDAELKCNTYY-APGRWMWLNFYS--F-----------------------------L---------SL   79 (471)
Q Consensus        41 ~~~~~~~~v~~g~~~~l~C~~~~-~~~~~~w~~~~~--~-----------------------------~---------~~   79 (471)
                      ...++.+.+.+|+.++|.|.+.. +...+.|++...  .                             |         ..
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDES   83 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCE
Confidence            44567899999999999999974 556889976420  0                             0         01


Q ss_pred             eeeeeeeec-------------------CCCCcEEEcCCceeecCCCcEEEEee-CCCCC--CeEEEEeCCCCCCCCCcc
Q psy17058         80 IIICLAYLS-------------------PQANEVQVTPRQQSAPEGSQVTIECK-SNDPS--ATIKWSKDNQEQLPPNMI  137 (471)
Q Consensus        80 ~~~c~~~~~-------------------~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~--~~v~W~~~~~~~~~~~~~  137 (471)
                      .|.|.+...                   ..+|.+.+.|....+.+|+.+.|.|. .+.+.  +.+.|+++ +..+.....
T Consensus        84 ~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~  162 (523)
T 2rcj_C           84 DYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD-GSPVKAGVE  162 (523)
T ss_pred             EEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecC-CCCCCCceE
Confidence            367887631                   23456666676667788999999999 66554  39999998 555543211


Q ss_pred             -------c------CcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE--eeccCCeeeecCCCceeEEcCCeEEEE
Q psy17058        138 -------A------GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRADIQ  202 (471)
Q Consensus       138 -------~------~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v--~~~~~p~~~~~~~~~~~v~~g~~~~L~  202 (471)
                             .      ...|.|.+++.+|+|.|+|.|.|..+. ......+.+  ....+|.+....+ ...+.+|+.++|.
T Consensus       163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~~~~~P~v~~~~~-~~~~~~G~~~~l~  240 (523)
T 2rcj_C          163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSASTKGPSVFPLAP-SSKSTSGGTAALG  240 (523)
T ss_pred             eccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc-cccceeeeecCCCCcCCEEEecCC-CcccccCCceEEE
Confidence                   1      136999999999999999999998765 333333221  2234455543332 2346789999999


Q ss_pred             EEccCCCCCC-eEEEEeCCCCCCcCCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCc
Q psy17058        203 CVLEAGEPSP-TQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       203 C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~  275 (471)
                      |.+....|.+ .++|++++..+........      ....+.|.|.++..+| |.|+|.|.|..+.......|.+...|.
T Consensus       241 C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~  319 (523)
T 2rcj_C          241 CLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPS  319 (523)
T ss_pred             EEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCce
Confidence            9994444766 8999999876432111111      1113479999999999 999999999998877777777766677


Q ss_pred             eeeCCCccEE-ecCCCcEEEEEEEeecCC----CeEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEE
Q psy17058        276 VTITPSEYVS-VRPGEPLTLECEATGRPM----PTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       276 ~~~~~~~~~~-~~~g~~v~l~C~~~g~p~----~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      +.+.++.... +.+|+.+.|.|.+.|.|+    +.+.|+|++..+.......       .....+.|.|..+..+|+|.|
T Consensus       320 ~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y  399 (523)
T 2rcj_C          320 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEY  399 (523)
T ss_pred             EEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeE
Confidence            6555443333 788999999999998653    4899999998875432110       112335688999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeee
Q psy17058        344 KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT  423 (471)
Q Consensus       344 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~  423 (471)
                      +|.|.|..+.......|.+....                                           ..+|.+...+....
T Consensus       400 ~C~a~n~~~~~~~~~~~~~~~~~-------------------------------------------~~~P~v~~~~~~~~  436 (523)
T 2rcj_C          400 KCKVSNKALPAPIEKTISKAKGQ-------------------------------------------PREPQVYTLPPSRE  436 (523)
T ss_pred             EEEEeCCCCCCceeEEEEcccCC-------------------------------------------CCCCEEEEeCCChH
Confidence            99999998877555555432110                                           12577766544432


Q ss_pred             eeCCCeEEEEEEecccCCc--eEEEecCCCCCCCc
Q psy17058        424 VKPGDIANIRCSAIGATPI--SIRWQPLQGYFPSH  456 (471)
Q Consensus       424 ~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~l~~~  456 (471)
                      ...|..+.|.|.+.|.|++  .|+|+|||++|...
T Consensus       437 ~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~  471 (523)
T 2rcj_C          437 EMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY  471 (523)
T ss_pred             HccCCceEEEEEEEeeECCCCEEEEEECCEECCCe
Confidence            2334459999999998776  99999999998754

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=3.2e-40  Score=318.87  Aligned_cols=332  Identities=22%  Similarity=0.356  Sum_probs=253.6

Q ss_pred             cCCCCcEEEc-CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC----cc---cCcEEEEc----CCCCCCCeE
Q psy17058         88 SPQANEVQVT-PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MI---AGETLIIN----GITKADEGV  154 (471)
Q Consensus        88 ~~~~~~v~~~-p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~----~~---~~~~L~i~----~v~~~D~G~  154 (471)
                      ...+|.+... +....+.+|+++.|.|. .+.|.+.+.|+|+ +..+...    ..   .++.|.|.    +++.+|+|.
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRN-SRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEET-TEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEEC-CEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence            3467888764 66788999999999999 8889999999999 5444311    11   45567665    889999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE  234 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  234 (471)
                      |+|.+.|..+...+....|.|  ..+|...........+.+|+.++|.|.+..+.|.+.+.|++++..............
T Consensus        92 Y~C~a~n~~g~~~s~~~~l~V--~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  169 (404)
T 3p3y_A           92 YQCFARNKFGTALSNRIRLQV--SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH  169 (404)
T ss_dssp             EEEEEECSSCEEEEEEEEEEE--CCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECT
T ss_pred             EEEEEEcCCCeEeeeeEEEEE--eccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcC
Confidence            999999987763334444444  455554444444567889999999999867788899999998765333222222333


Q ss_pred             eceEEEeccCCCC-CeEEEEEEEcCCCceE---EEEEEEEEeC-------CceeeCC--CccEEecCCCcEEEEEEEeec
Q psy17058        235 LGVLRFNNIATGD-EGKYTCIAENSAGKEV---MNAYIHVLTL-------PAVTITP--SEYVSVRPGEPLTLECEATGR  301 (471)
Q Consensus       235 ~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~---~~~~l~V~~~-------p~~~~~~--~~~~~~~~g~~v~l~C~~~g~  301 (471)
                      ++.|.|.++...| +|.|+|.+.|..+...   ..+.+.+...       |.+....  .....+.+|+.+.|.|.+.|+
T Consensus       170 ~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~  249 (404)
T 3p3y_A          170 NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV  249 (404)
T ss_dssp             TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCS
T ss_pred             CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCC
Confidence            6789999999999 5999999999877532   2245666532       2222111  123468899999999999999


Q ss_pred             CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCcccc
Q psy17058        302 PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP  381 (471)
Q Consensus       302 p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~  381 (471)
                      |.+.+.|++++..+..... ........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+                
T Consensus       250 p~~~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~----------------  312 (404)
T 3p3y_A          250 PTPDIAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA----------------  312 (404)
T ss_dssp             SCCEEEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE----------------
T ss_pred             CCCcEEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCC----------------
Confidence            9999999999988764432 22334578999999999999999999999999999999999874                


Q ss_pred             CCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCce----
Q psy17058        382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHV----  457 (471)
Q Consensus       382 ~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~----  457 (471)
                                                     |.+...+....+.+|+.+.|.|.+.|+|++.++|+|||..+..+.    
T Consensus       313 -------------------------------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~  361 (404)
T 3p3y_A          313 -------------------------------PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPN  361 (404)
T ss_dssp             -------------------------------EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTT
T ss_pred             -------------------------------CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCce
Confidence                                           688888888899999999999999999999999999999986543    


Q ss_pred             -EEecCeEEECCCC
Q psy17058        458 -VEYNGELRLGPHK  470 (471)
Q Consensus       458 -~~~~~~l~i~~~~  470 (471)
                       ...+++|.|.+++
T Consensus       362 ~~~~~~~L~i~~v~  375 (404)
T 3p3y_A          362 REVAGDTIIFRDTQ  375 (404)
T ss_dssp             EEEETTEEEESSCC
T ss_pred             EEecCCEEEEeecC
Confidence             3367789998875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=4.1e-40  Score=346.47  Aligned_cols=397  Identities=22%  Similarity=0.318  Sum_probs=298.1

Q ss_pred             ccCcCCCCCeeeecccccccccccccccceeeeccceEEEEecCcEEEEEEeeeCC----ccEEEeccchhh--------
Q psy17058         10 KPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAP----GRWMWLNFYSFL--------   77 (471)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~----~~~~w~~~~~~~--------   77 (471)
                      +.|.+.+.|..++..|+...+.+  ...+++......+.+.+|+.++|.|..+...    ..+.|++....+        
T Consensus       113 G~Y~C~a~n~~G~~~S~~~~v~~--~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~  190 (816)
T 3dmk_A          113 QVYACLARNQFGSIISRDVHVRA--VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD  190 (816)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE--ECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBT
T ss_pred             eEEEEEEecCcceEEccceEEEE--EEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCC
Confidence            56777888888888788777664  2344445566778999999999999987322    578898643211        


Q ss_pred             --------------------h-heeeeeeeecC---------------------CCCcEEEcC--CceeecCCCcEEEEe
Q psy17058         78 --------------------S-LIIICLAYLSP---------------------QANEVQVTP--RQQSAPEGSQVTIEC  113 (471)
Q Consensus        78 --------------------~-~~~~c~~~~~~---------------------~~~~v~~~p--~~~~v~~G~~v~l~C  113 (471)
                                          . ..|.|.+....                     .+|.+...+  ....+.+|+++.|.|
T Consensus       191 ~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C  270 (816)
T 3dmk_A          191 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLC  270 (816)
T ss_dssp             TTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECC
T ss_pred             ceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEE
Confidence                                1 34788865211                     122222111  245789999999999


Q ss_pred             e-CCCCCCeEEEEeCCCCCC-------CCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeee
Q psy17058        114 K-SNDPSATIKWSKDNQEQL-------PPNMI-AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR  184 (471)
Q Consensus       114 ~-~~~p~~~v~W~~~~~~~~-------~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~  184 (471)
                      . .+.|.+.+.|+|++....       ..+.. ..++|.|.+++.+|+|.|+|.+.|..+. ......+.|.  .++...
T Consensus       271 ~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~--~~~~~~  347 (816)
T 3dmk_A          271 PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVT--APLSAK  347 (816)
T ss_dssp             CCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEC--EEEEEE
T ss_pred             EeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCc-eEEEEEEEEc--CCCcee
Confidence            9 888999999999632211       11111 4679999999999999999999998876 5555555554  444444


Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      ..+. ...+.+|+.++|.|.+ .+.|.+.++|++++..+..        ..+.|.|.+++.+|+|.|+|.+.|..+....
T Consensus       348 ~~~~-~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  417 (816)
T 3dmk_A          348 IDPP-TQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAEA  417 (816)
T ss_dssp             EESS-EEECCTTSCEEEEEEE-EEECCCEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eCCC-ceEecCCCCEEEEEEE-eccCCCEEEEEECCEECCC--------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEE
Confidence            4443 4567899999999999 7788999999999876432        2467999999999999999999999888777


Q ss_pred             EEEEEEE---eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-------cccCceeEEEEee
Q psy17058        265 NAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIAS  334 (471)
Q Consensus       265 ~~~l~V~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~  334 (471)
                      ++.|.|.   .+|.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|++++..+......       ........|.|.+
T Consensus       418 ~~~l~v~~~~~~p~i~~~~-~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~  496 (816)
T 3dmk_A          418 SAELKLGGRFDPPVIRQAF-QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS  496 (816)
T ss_dssp             CCEEECCCSSCCCEEEEEC-CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESS
T ss_pred             EEEEEEccccCCCceEecC-cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEee
Confidence            7777774   355555443 3457889999999999999999999999999887643221       1122345799999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCe
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR  414 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~  414 (471)
                      ++.+|+|.|+|.|.|..|....++.|.|..+                                               |.
T Consensus       497 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-----------------------------------------------p~  529 (816)
T 3dmk_A          497 VHANDGGLYKCIAKSKVGVAEHSAKLNVYGL-----------------------------------------------PY  529 (816)
T ss_dssp             CCTTTCEEEEEEEEETTEEEEEEEEEEECSS-----------------------------------------------CE
T ss_pred             ccccCCEEEEEEEEECCCeEEEEEEEEEecC-----------------------------------------------Ce
Confidence            9999999999999999999999999999875                                               43


Q ss_pred             eEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE---ecCeEEECCCC
Q psy17058        415 ITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE---YNGELRLGPHK  470 (471)
Q Consensus       415 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~l~i~~~~  470 (471)
                      +. .+....+.+|+.+.|.|.+.|.|.+.++|+|||..+..+.+.   .+++|.|.+++
T Consensus       530 ~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~  587 (816)
T 3dmk_A          530 IR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE  587 (816)
T ss_dssp             EC-CCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCC
T ss_pred             eE-ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecC
Confidence            33 334567889999999999999999999999999988655432   57889998874

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=4.7e-40  Score=316.74  Aligned_cols=329  Identities=21%  Similarity=0.284  Sum_probs=249.9

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCCCCCc------ccCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQLPPNM------IAGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..+|.|...|.++.+.+|+++.|.|. .+ .|.+.+.|+|+ +..+....      ...++|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~-g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD-GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE   82 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEES-SSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEEC-CcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEE
Confidence            46889999999999999999999999 55 78899999999 55554332      156789999999999999999999


Q ss_pred             ecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-Cc------CCCceEEe
Q psy17058        161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-KF------GPDVEVYQ  233 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-~~------~~~~~~~~  233 (471)
                      |..+...+....+.|.....|.+..   ....+.+|+.++|.|.+..+.|.+.+.|++++... +.      ..++....
T Consensus        83 n~~g~~~s~~~~l~v~~~~~p~~~~---~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~  159 (395)
T 1bih_A           83 TPAGVASSRVISFRKTYLIASPAKT---HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP  159 (395)
T ss_dssp             ETTEEEECCCEEEEEEEEECCCCEE---EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT
T ss_pred             eCCCeEEeEEEEEEEEEeecCCcCC---cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcC
Confidence            9876533334556655433444321   23456799999999996567888999999987221 11      22333333


Q ss_pred             eeceEEEeccCCCCCe---EEEEEEEcCCCceEEEEEEEEE---eCC--------ceeeCCCccEEecCCCcEEEEEEEe
Q psy17058        234 ELGVLRFNNIATGDEG---KYTCIAENSAGKEVMNAYIHVL---TLP--------AVTITPSEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       234 ~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~l~V~---~~p--------~~~~~~~~~~~~~~g~~v~l~C~~~  299 (471)
                       ++.|.|.+++.+|.|   .|+|.+.|..+...........   ..+        ..... .....+.+|+.+.|.|.+.
T Consensus       160 -~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~G~~v~l~C~~~  237 (395)
T 1bih_A          160 -DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV-SKDMMAKAGDVTMIYCMYG  237 (395)
T ss_dssp             -TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEE-CCSEEEETTSCEEEEEEEE
T ss_pred             -CCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceec-CCceEEECCCcEEEEEEec
Confidence             568999999999999   9999999988775433322221   110        11111 2346788999999999999


Q ss_pred             ecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEEecCCCCCCCCCC
Q psy17058        300 GRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VITVAVEHRPEYGPISPR  374 (471)
Q Consensus       300 g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~  374 (471)
                      |+|.+.+.|++++..+.....    .........|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+         
T Consensus       238 g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~---------  308 (395)
T 1bih_A          238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA---------  308 (395)
T ss_dssp             CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE---------
T ss_pred             cCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC---------
Confidence            999999999999988753211    111223458999999999999999999999998765 889998864         


Q ss_pred             CCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCe-eeeeCCCeEEEEEEecccCCceEEEecCCCCC
Q psy17058        375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGATPISIRWQPLQGYF  453 (471)
Q Consensus       375 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l  453 (471)
                                                            |.|...+.. ..+.+|+.+.|.|.+.|.|.|.++|+|||.+|
T Consensus       309 --------------------------------------P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~  350 (395)
T 1bih_A          309 --------------------------------------PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL  350 (395)
T ss_dssp             --------------------------------------EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEEC
T ss_pred             --------------------------------------CccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEEC
Confidence                                                  788877776 78999999999999999999999999999998


Q ss_pred             CCc-eEEecCeEEECCCC
Q psy17058        454 PSH-VVEYNGELRLGPHK  470 (471)
Q Consensus       454 ~~~-~~~~~~~l~i~~~~  470 (471)
                      ..+ ....+++|.|.+++
T Consensus       351 ~~~~~~~~~~~L~i~~~~  368 (395)
T 1bih_A          351 SGGRATVTDSGLVIKGVK  368 (395)
T ss_dssp             CSSSEEEETTEEEESSCC
T ss_pred             CCCceEEECCEEEEeeCC
Confidence            754 33467799998875

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.5e-39  Score=312.47  Aligned_cols=325  Identities=19%  Similarity=0.320  Sum_probs=244.1

Q ss_pred             CCCcEEEcCCc-eeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc-----ccCcEEEEcCCCCCC------CeEEE
Q psy17058         90 QANEVQVTPRQ-QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-----IAGETLIINGITKAD------EGVYI  156 (471)
Q Consensus        90 ~~~~v~~~p~~-~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~-----~~~~~L~i~~v~~~D------~G~Y~  156 (471)
                      .+|.|...|.+ +.+.+|+.++|.|. .+.|.+.+.|+++++..+....     ..+++|.|.+++.+|      +|.|+
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence            36788888775 55889999999999 7889999999995476665321     156789999999997      99999


Q ss_pred             EEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC---CCeEEEEeCCCCCCc-----CCC
Q psy17058        157 CSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP---SPTQTWIRPDNDGKF-----GPD  228 (471)
Q Consensus       157 C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~~~~-----~~~  228 (471)
                      |.+.|..+...+....+.+.  .+|.+...+ ....+.+|+.++|.|.+ .+.+   .+.+.|++++..+..     ..+
T Consensus        82 C~a~n~~g~~~s~~~~v~v~--~~p~~~~~~-~~~~v~~G~~v~l~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  157 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVRAV--VAQYYEADV-NKEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEYDGK  157 (388)
T ss_dssp             EEEEETTEEEECCCEEEEEE--CCCCCCCBC-CCEEEETTSCEEECCBC-CTTTTTTEEEEEEEETTCCEECSSSCBTTT
T ss_pred             EEEEccCCeEEecceEEEEc--cccccccCc-cceeeecCCcEEEEEEC-cCCCCCCcceEEEEeCCCcccccccCCCCc
Confidence            99999877533334444443  445444333 34578899999999999 4443   378999999876432     223


Q ss_pred             ceEEeeeceEEEeccCCCCC-eEEEEEEEcCCCceE-EE---EEEEEEeCC-----ceeeCCCccEEecCCCcEEEEEEE
Q psy17058        229 VEVYQELGVLRFNNIATGDE-GKYTCIAENSAGKEV-MN---AYIHVLTLP-----AVTITPSEYVSVRPGEPLTLECEA  298 (471)
Q Consensus       229 ~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~-~~---~~l~V~~~p-----~~~~~~~~~~~~~~g~~v~l~C~~  298 (471)
                      ..+. ..+.|.|.+++.+|+ |.|+|.+.|..+... .+   ..|.|..+.     .+.........+.+|+.+.|.|.+
T Consensus       158 ~~~~-~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~  236 (388)
T 2v5m_A          158 YLVL-PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA  236 (388)
T ss_dssp             EEEC-TTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC
T ss_pred             EEEc-cCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC
Confidence            3333 256899999999999 999999999754322 21   345665432     111111223467899999999999


Q ss_pred             eecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCC
Q psy17058        299 TGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR  374 (471)
Q Consensus       299 ~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  374 (471)
                      .|+|.+.+.|++++..+....    ........+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+         
T Consensus       237 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---------  307 (388)
T 2v5m_A          237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP---------  307 (388)
T ss_dssp             EEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE---------
T ss_pred             CCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC---------
Confidence            999999999999865543111    1011223568999999999999999999999999999999999864         


Q ss_pred             CCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCC
Q psy17058        375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFP  454 (471)
Q Consensus       375 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~  454 (471)
                                                            |.+...+....+.+|+.+.|.|.+.|+|++.|+|+|||..|.
T Consensus       308 --------------------------------------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~  349 (388)
T 2v5m_A          308 --------------------------------------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG  349 (388)
T ss_dssp             --------------------------------------EEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECS
T ss_pred             --------------------------------------CccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECc
Confidence                                                  677777878899999999999999999999999999999986


Q ss_pred             CceEEecCeEEECCCC
Q psy17058        455 SHVVEYNGELRLGPHK  470 (471)
Q Consensus       455 ~~~~~~~~~l~i~~~~  470 (471)
                      .+    +++|.|.+++
T Consensus       350 ~~----~~~L~i~~v~  361 (388)
T 2v5m_A          350 HS----ESVLRIESVK  361 (388)
T ss_dssp             CC----SSEEEESSCC
T ss_pred             cC----CCEEEEecCC
Confidence            53    5678887764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=322.49  Aligned_cols=343  Identities=15%  Similarity=0.157  Sum_probs=240.1

Q ss_pred             ceEEEEecCcEEEEEEeeeCC-ccEEEeccchhh--------------h-----------heeeeeeeecCCC----CcE
Q psy17058         45 HEVTVYEGGDAELKCNTYYAP-GRWMWLNFYSFL--------------S-----------LIIICLAYLSPQA----NEV   94 (471)
Q Consensus        45 ~~~~v~~g~~~~l~C~~~~~~-~~~~w~~~~~~~--------------~-----------~~~~c~~~~~~~~----~~v   94 (471)
                      ..+.|.+|+.++|.|.+..++ ..+.|.++...+              +           ..|.|.+......    ..+
T Consensus        56 ~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v  135 (527)
T 3qs9_E           56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV  135 (527)
T ss_dssp             CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred             eeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEE
Confidence            379999999999999998655 578887533310              0           1367777532111    111


Q ss_pred             EEc-------CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc-c--cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         95 QVT-------PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-I--AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        95 ~~~-------p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~-~--~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+.       +.......|+.+.|.|. .+.|.+.+.|+++++ ...... .  .........+...|+|.|+|.|.|..
T Consensus       136 ~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~  214 (527)
T 3qs9_E          136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDS-QGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL  214 (527)
T ss_dssp             EEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEEEEEECSS
T ss_pred             EECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCC-CCccccccCCcEEEEeeeeccccCCEEEEEEEEeCC
Confidence            111       12234566888899999 899999999999843 332111 1  11122233456889999999999988


Q ss_pred             CceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE--------Eeee
Q psy17058        164 GNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--------YQEL  235 (471)
Q Consensus       164 ~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--------~~~~  235 (471)
                      |.....  .+.+.+...|..   ++....+.+|+.++|.|.+..+.|.+.++|++++..+........        ....
T Consensus       215 G~~~~~--~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~  289 (527)
T 3qs9_E          215 GRECTR--LFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI  289 (527)
T ss_dssp             CEEEEE--CEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEE
T ss_pred             Ccccce--EEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeE
Confidence            873332  244444444543   344567889999999999944889999999999987554322211        1224


Q ss_pred             ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCC-ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc
Q psy17058        236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP  314 (471)
Q Consensus       236 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~  314 (471)
                      ..|.|.+++.+|+|.|+|.|.|.   .+..+.|.|..+|.+...+. ....+.+|+.+.|.|.+.|+|.|.+.|++++..
T Consensus       290 ~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~  366 (527)
T 3qs9_E          290 LFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS  366 (527)
T ss_dssp             EEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEE
T ss_pred             EEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence            56999999999999999999887   67778889988887766543 235678999999999999999999999999988


Q ss_pred             CCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCC
Q psy17058        315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEG  394 (471)
Q Consensus       315 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~  394 (471)
                      +.....  .......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+                             
T Consensus       367 l~~~~~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~-----------------------------  415 (527)
T 3qs9_E          367 FPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-----------------------------  415 (527)
T ss_dssp             EECBCC--BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CC-----------------------------
T ss_pred             CcCCcc--cccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecC-----------------------------
Confidence            754432  2235678999999999999999999999999999999999764                             


Q ss_pred             ceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCC
Q psy17058        395 EYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYF  453 (471)
Q Consensus       395 ~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l  453 (471)
                                        |.|...+.      |  ..|.|.+.|.|+|.|+|++++..+
T Consensus       416 ------------------P~i~~~~~------~--~~l~C~a~g~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          416 ------------------PQVLAEAS------A--SQASCFSDGYPLPSWTWKKCSDKS  448 (527)
T ss_dssp             ------------------CEEEECCC------C--E---EEEECSSCCEEEEECCC---
T ss_pred             ------------------CeEEEeCC------C--CEEEEEEEEEcCCeEEEEECCCCc
Confidence                              67765542      2  358999999999999999986544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=2.4e-38  Score=305.62  Aligned_cols=326  Identities=23%  Similarity=0.368  Sum_probs=255.0

Q ss_pred             ccceeeeccceEEEEecCcEEEEEEeee--CCccEEEeccchhh------------------------------hheeee
Q psy17058         36 VTQFVSAENHEVTVYEGGDAELKCNTYY--APGRWMWLNFYSFL------------------------------SLIIIC   83 (471)
Q Consensus        36 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~~~w~~~~~~~------------------------------~~~~~c   83 (471)
                      ....+...++++.+.+|+.++|.|.+..  +...+.|++++..+                              ...|.|
T Consensus        20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C   99 (403)
T 3laf_A           20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC   99 (403)
T ss_dssp             CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEE
T ss_pred             eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEE
Confidence            3456677889999999999999999985  45579999755322                              123688


Q ss_pred             eeee--------------cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC---cc----cCcE
Q psy17058         84 LAYL--------------SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MI----AGET  141 (471)
Q Consensus        84 ~~~~--------------~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~---~~----~~~~  141 (471)
                      .+..              ...++.+...+....+.+|+++.|.|. .+.|.+.+.|+++ +..+...   ..    ..+.
T Consensus       100 ~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~  178 (403)
T 3laf_A          100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN-QQDLNPIPGDSRVVVLPSGA  178 (403)
T ss_dssp             EEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEES-SSBCCCCTTCCSEEECTTSC
T ss_pred             EEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEEC-CEeccccCCceEEEEcCCce
Confidence            8752              123455555667788999999999999 7888899999999 5444211   11    4678


Q ss_pred             EEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccC---CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe
Q psy17058        142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR  218 (471)
Q Consensus       142 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~  218 (471)
                      |.|.+++.+|+|.|+|.+.|..+........+.|.....   +...........+.+|+.++|.|.+ .+.|.+.+.|++
T Consensus       179 L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~  257 (403)
T 3laf_A          179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLR  257 (403)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEE
T ss_pred             EEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEE
Confidence            999999999999999999997765344455566553221   1122333445678899999999999 678888999999


Q ss_pred             CCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE
Q psy17058        219 PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA  298 (471)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~  298 (471)
                      ++..+...........++.|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~v~l~C~~  336 (403)
T 3laf_A          258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS-NLYAYESMDIEFECAV  336 (403)
T ss_dssp             TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCC-CEECCTTCCEEECCEE
T ss_pred             CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCc-ceEEecCCeEEEEEEE
Confidence            988765544444444467899999999999999999999999889999999999888876653 5678899999999999


Q ss_pred             eecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        299 TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       299 ~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .|.|.+.+.|++++..+..... ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       337 ~g~p~p~v~W~~~g~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          337 SGKPVPTVNWMKNGDVVIPSDY-FQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEESCCEEEEEETTEECCCSSS-EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             eeccCCEEEEEECCEECCCCCc-EEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            9999999999999988754322 12234568999999999999999999999999999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.2e-37  Score=315.66  Aligned_cols=372  Identities=15%  Similarity=0.176  Sum_probs=266.9

Q ss_pred             eeccceEEEEecCcEEEEEEeeeCCc----cEEEeccchhh-------------------------------h-------
Q psy17058         41 SAENHEVTVYEGGDAELKCNTYYAPG----RWMWLNFYSFL-------------------------------S-------   78 (471)
Q Consensus        41 ~~~~~~~~v~~g~~~~l~C~~~~~~~----~~~w~~~~~~~-------------------------------~-------   78 (471)
                      ...++.+.+.+|+.++|.|.+...+.    .+.|++....+                               .       
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            45577899999999999999985432    78898764210                               0       


Q ss_pred             ----heeeeeeee------------cCCCCcEEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCC--------
Q psy17058         79 ----LIIICLAYL------------SPQANEVQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQL--------  132 (471)
Q Consensus        79 ----~~~~c~~~~------------~~~~~~v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~--------  132 (471)
                          ..|.|.+..            ...+|.+...+....+.+|+.+.|.|. . ..+.+.+.|+++++...        
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~  163 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSG  163 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCc
Confidence                125777541            234566666778889999999999999 4 44567899999954321        


Q ss_pred             ------CCCcc---cC-----cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCe
Q psy17058        133 ------PPNMI---AG-----ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR  198 (471)
Q Consensus       133 ------~~~~~---~~-----~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~  198 (471)
                            ..+..   .+     ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..  ++      +....+.+|+.
T Consensus       164 ~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~--~~------p~~~~~~~G~~  234 (585)
T 2ocw_A          164 YVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLK--PE------PELVYEDLRGS  234 (585)
T ss_pred             ccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc-ccceEEEEEcc--CC------CceeEEcCCCc
Confidence                  11111   11     27999999999999999999988776 55566666653  22      22335678999


Q ss_pred             EEEEEEccCCCCC-CeEEEE-eCCCCCC------------cCCCceEEe--eec--eEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        199 ADIQCVLEAGEPS-PTQTWI-RPDNDGK------------FGPDVEVYQ--ELG--VLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       199 ~~L~C~~~~~~p~-~~v~W~-~~~~~~~------------~~~~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ++|.|.+....|. +.+.|+ +++....            ...++.+..  ..+  .|.|.+++.+|+|.|+|.+.|...
T Consensus       235 v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~  314 (585)
T 2ocw_A          235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ  314 (585)
T ss_pred             EEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCC
Confidence            9999998333333 689997 7774211            122333321  123  799999999999999999999633


Q ss_pred             ce----EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeE----EEEe--CCc--cCCCc----------
Q psy17058        261 KE----VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV----SWVK--YIA--PFDRN----------  318 (471)
Q Consensus       261 ~~----~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i----~W~~--~~~--~~~~~----------  318 (471)
                      ..    ...+.|.|..+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+...          
T Consensus       315 ~~~~~~~~~~~l~V~~~p~~~~~~-~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~  393 (585)
T 2ocw_A          315 LQEGSPIQAWQLFVNEESTIPRSP-TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG  393 (585)
T ss_pred             ccccCceeeEEEEEecccccccCC-cceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCC
Confidence            33    277889999888776554 4567889999999999999998876    7999  776  33210          


Q ss_pred             -ccccc--cCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCc
Q psy17058        319 -LERDE--LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGE  395 (471)
Q Consensus       319 -~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  395 (471)
                       .....  .....+|.|.+++.+|+|.|+|.| |..|..+..+.|.|...|                             
T Consensus       394 r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~-----------------------------  443 (585)
T 2ocw_A          394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGE-----------------------------  443 (585)
T ss_pred             CEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCc-----------------------------
Confidence             00000  122345999999999999999999 999999999999998753                             


Q ss_pred             eEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEec----ccCCceEEEecCCCCCCCce---------EEe--
Q psy17058        396 YVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAI----GATPISIRWQPLQGYFPSHV---------VEY--  460 (471)
Q Consensus       396 ~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~----g~p~~~v~W~~~g~~l~~~~---------~~~--  460 (471)
                                       |.+.. +....+.+|+.+.|.|.+.    +.|.+.|+|+|||..|..+.         ...  
T Consensus       444 -----------------p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~  505 (585)
T 2ocw_A          444 -----------------PNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN  505 (585)
T ss_pred             -----------------ccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCc
Confidence                             44443 5667899999999999997    77889999999998874331         111  


Q ss_pred             --cCeEEECCCC
Q psy17058        461 --NGELRLGPHK  470 (471)
Q Consensus       461 --~~~l~i~~~~  470 (471)
                        .++|.|.+++
T Consensus       506 ~~~~~L~i~~v~  517 (585)
T 2ocw_A          506 SRLVSLTLNLVT  517 (585)
T ss_pred             ccEEEEEECCCC
Confidence              1488888875

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=6.4e-41  Score=350.73  Aligned_cols=448  Identities=19%  Similarity=0.262  Sum_probs=95.2

Q ss_pred             CCCCCeeeecccc----ccccccccccccee---eeccceEEEEec--CcEEEEEEeeeCCccEEEecc--chh-h----
Q psy17058         14 SNQGNALTTTPSR----QETNAFAGEVTQFV---SAENHEVTVYEG--GDAELKCNTYYAPGRWMWLNF--YSF-L----   77 (471)
Q Consensus        14 ~~~g~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~v~~g--~~~~l~C~~~~~~~~~~w~~~--~~~-~----   77 (471)
                      ...|.+.+.....    ...+.+.....+++   ...+..+.+.+|  +.++|.|.+..+...+.|++.  ... .    
T Consensus        96 ~d~G~Y~C~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~~~  175 (772)
T 3v2a_R           96 NDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN  175 (772)
T ss_dssp             ------------------------------------CEEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCCSS
T ss_pred             hhCEeEEEEEcCCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCCCc
Confidence            4567777765422    22233322223333   233567889999  889999999988889999885  111 0    


Q ss_pred             -------------------hheeeeeeeec---------------CCCCcEEEcCCc-eeecCCCcEEEEee-CC--CCC
Q psy17058         78 -------------------SLIIICLAYLS---------------PQANEVQVTPRQ-QSAPEGSQVTIECK-SN--DPS  119 (471)
Q Consensus        78 -------------------~~~~~c~~~~~---------------~~~~~v~~~p~~-~~v~~G~~v~l~C~-~~--~p~  119 (471)
                                         ...|.|.+...               ..++.+.+.|.. ..+.+|++++|.|. .+  .+.
T Consensus       176 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  255 (772)
T 3v2a_R          176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG  255 (772)
T ss_dssp             SCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCC
T ss_pred             eeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCc
Confidence                               02367877521               334556666654 68999999999999 43  556


Q ss_pred             CeEEEEeCCCCCCCC--------------CcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeee
Q psy17058        120 ATIKWSKDNQEQLPP--------------NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRI  185 (471)
Q Consensus       120 ~~v~W~~~~~~~~~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~  185 (471)
                      +.+.|++++......              .......|.|.+++.+|+|.|+|.+.|..+. ......|.|.  .+|.+..
T Consensus       256 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~--~~p~~~~  332 (772)
T 3v2a_R          256 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVH--EKPFVAF  332 (772)
T ss_dssp             CEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE-EEEEEEEEEE--CCCC---
T ss_pred             eeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc-eeEEEEEEEe--CCCeeEe
Confidence            789999994432111              1114468999999999999999999988775 4445555554  5565443


Q ss_pred             cC--CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-
Q psy17058        186 HP--NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-  262 (471)
Q Consensus       186 ~~--~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-  262 (471)
                      .+  .....+.+|+.++|.|.+ .+.|.+.+.|++++..+....  .+. ....|.|.++..+|+|.|+|.+.|..+.. 
T Consensus       333 ~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~~~--~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  408 (772)
T 3v2a_R          333 GSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLESNH--TIK-AGHVLTIMEVSERDTGNYTVILTNPISKEK  408 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCCCc--eEc-cceeEEEecCChhcCceEEEEEEECCcCeE
Confidence            32  234567899999999999 678889999999988754432  222 35789999999999999999999987764 


Q ss_pred             -EEEEEEEEEeCCceeeCCC--ccEEecCCCcEEEEEEEeecCCCe-EEEEeCCcc------------------------
Q psy17058        263 -VMNAYIHVLTLPAVTITPS--EYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAP------------------------  314 (471)
Q Consensus       263 -~~~~~l~V~~~p~~~~~~~--~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~------------------------  314 (471)
                       +..+.|.|..+|.+.....  ....+.+|+.+.|.|.+.|.|.|. +.|++++..                        
T Consensus       409 ~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (772)
T 3v2a_R          409 QSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSV  488 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcccccccc
Confidence             4566777877777643211  112478899999999999999996 999996332                        


Q ss_pred             --------CCCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCC--CCCcc
Q psy17058        315 --------FDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR--PGADI  379 (471)
Q Consensus       315 --------~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~--~~~~~  379 (471)
                              +.....     .........|.|.++  +|+|.|+|.|.|..|..+..+.|.|..+|.+......  .....
T Consensus       489 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~  566 (772)
T 3v2a_R          489 EDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQES  566 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCc
Confidence                    100000     001112256777776  7899999999999999999999998876644221100  00000


Q ss_pred             -----ccCC-----CcccCC---C---------------------------CCCC-----ceEEEcCCcce--EEe----
Q psy17058        380 -----LPDG-----DEYYRP---E---------------------------PEEG-----EYVYAVGSNAS--ISC----  408 (471)
Q Consensus       380 -----~~~~-----~~w~~~---~---------------------------~~~~-----~~~~~~~~~~~--y~c----  408 (471)
                           ...+     ..|...   .                           ..+.     +.|.++..+|+  |+|    
T Consensus       567 v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  646 (772)
T 3v2a_R          567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD  646 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEe
Confidence                 0111     167211   0                           0121     57889999998  999    


Q ss_pred             ----------------eecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ecCeEEECC
Q psy17058        409 ----------------SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YNGELRLGP  468 (471)
Q Consensus       409 ----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~l~i~~  468 (471)
                                      +..+|.|...+.+..+.+|+.+.|.|.+.|.|+|.|+|+|||.+|..+.++    .+++|.|.+
T Consensus       647 ~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~  726 (772)
T 3v2a_R          647 RKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRR  726 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECc
Confidence                            246788887777788999999999999999999999999999999876543    367888887


Q ss_pred             CC
Q psy17058        469 HK  470 (471)
Q Consensus       469 ~~  470 (471)
                      ++
T Consensus       727 v~  728 (772)
T 3v2a_R          727 VR  728 (772)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=306.82  Aligned_cols=302  Identities=16%  Similarity=0.210  Sum_probs=210.7

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ..+.+.++|..+.|.+|+++.|.|. .+.|.+.+.|++++ ..+.....      ....|.|.+++.+|+|.|+|.|.|.
T Consensus        47 ~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~-~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~  125 (423)
T 3qs7_E           47 QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKH-SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE  125 (423)
T ss_dssp             ---------CEEEECSSCCEEEEEECSCCSSCEEEEEETT-EEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred             CCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECC-CccCccceeccccceEEEEEEeecCcccCEEEEEEEEcC
Confidence            3456667788999999999999999 88999999999984 33322111      2247999999999999999999998


Q ss_pred             CCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC---CceEEeeeceEE
Q psy17058        163 QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP---DVEVYQELGVLR  239 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~l~  239 (471)
                      .+. ......|.|.  .+|.+...  ....+..|+.++|.|.+ .|.|.+.++|++++..+....   ...+......+ 
T Consensus       126 ~g~-~~~~~~l~V~--~~p~~~~~--~p~~~~~~~~~~L~C~a-~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-  198 (423)
T 3qs7_E          126 ATN-YTILFTVSIR--NTLLYTLR--RPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-  198 (423)
T ss_dssp             -CE-EEEEEEEEEC-------CEE--EEEEEECSSSSCEEEEE-EESSCCEEEEEEC-------------CEEECCSEE-
T ss_pred             CCc-EEEEEEEEEe--cCcccccc--CCcEeccCCceEEEEEE-eeecCCeEEEEECCCCCccccccccccccccceEE-
Confidence            876 4444455554  44443211  22345578889999999 889999999999887532110   01111111111 


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEE-EEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCC
Q psy17058        240 FNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDR  317 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~  317 (471)
                          ...|+|.|+|.|.|..|.... .+.|.|...|..   +.....+.+|+.+.|.|.+.| .|.+.+.|++++..+..
T Consensus       199 ----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~---~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~  271 (423)
T 3qs7_E          199 ----HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE  271 (423)
T ss_dssp             ----CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS---STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCG
T ss_pred             ----ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc---CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccc
Confidence                578999999999999887543 366766655544   233568899999999999999 67789999999988754


Q ss_pred             cccc--------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCC
Q psy17058        318 NLER--------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP  389 (471)
Q Consensus       318 ~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~  389 (471)
                      ....        .......+|.|.+++.+|+|.|+|.|.|.   .+.++.|.|..+                        
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~------------------------  324 (423)
T 3qs7_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK------------------------  324 (423)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESS------------------------
T ss_pred             cceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeC------------------------
Confidence            2110        01223457999999999999999999998   777888888875                        


Q ss_pred             CCCCCceEEEcCCcceEEeeecCCeeEEcC--CeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCc
Q psy17058        390 EPEEGEYVYAVGSNASISCSVEPPRITLRP--VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH  456 (471)
Q Consensus       390 ~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~  456 (471)
                                             |.+...+  ....+.+|+++.|.|.+.|+|+|.|+|+|||++|..+
T Consensus       325 -----------------------p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~  370 (423)
T 3qs7_E          325 -----------------------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (423)
T ss_dssp             -----------------------CEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             -----------------------CcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCc
Confidence                                   4555444  3467889999999999999999999999999998654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.3e-37  Score=311.13  Aligned_cols=319  Identities=16%  Similarity=0.240  Sum_probs=245.5

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      ..||.+...+....+.+|++++|.|. .+    .+.|+++ +..+. .......|.|.+++.+|+|.|+|.+.|  |.  
T Consensus        34 ~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~-~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~--  103 (524)
T 2ec8_A           34 PSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFE-ILDET-NENKQNEWITEKAEATNTGKYTCTNKH--GL--  103 (524)
T ss_dssp             CCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEE-SSSCC-EEECSSEEEESSCCSTTCEEEEEEETT--SC--
T ss_pred             CCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCC-Ccccc-ccCccceEEEcccchhhCEEEEEeecC--Cc--
Confidence            46777777778889999999999999 44    8999999 55553 222678999999999999999999988  32  


Q ss_pred             eeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe-CCCCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-PDNDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       168 ~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                      +  ..+.|.+..+|.... ......+.+|+.++|.|.+ .+.+.+.+.|++ ++..+....++.... .+.|.|.+++.+
T Consensus       104 ~--~~~~l~V~~p~~~~~-~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~~~~~~~~~~-~~~L~i~~~~~~  178 (524)
T 2ec8_A          104 S--NSIYVFVRDPAKLFL-VDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDP-KAGIMIKSVKRA  178 (524)
T ss_dssp             E--EEEEEECCCSSCSBC-CCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCCSSCEEEEET-TTEEEEESCCGG
T ss_pred             c--eEEEEEECCCCcccc-cccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCcCCCCceeECC-CccEEEeccchh
Confidence            3  344444445555443 3445678899999999999 566668999998 666654444444333 668999999999


Q ss_pred             CCe-EEEEEEEcCCCce-EEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeecCCCe-EEEEeCCccC--CC
Q psy17058        247 DEG-KYTCIAENSAGKE-VMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPF--DR  317 (471)
Q Consensus       247 d~G-~Y~C~~~~~~~~~-~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~--~~  317 (471)
                      |+| .|+|.+.|..+.. +..+.|.|.    .+|.+...+. ...+.+|+++.|.|.+.|.|.+. +.|++++..+  ..
T Consensus       179 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~-~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~  257 (524)
T 2ec8_A          179 YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA-SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE  257 (524)
T ss_dssp             GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCS-EEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE
T ss_pred             hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCC-cceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc
Confidence            999 9999999876654 446778886    5666666654 45889999999999999999886 9999999883  21


Q ss_pred             ccc--cc---ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCC
Q psy17058        318 NLE--RD---ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE  392 (471)
Q Consensus       318 ~~~--~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~  392 (471)
                      ...  ..   .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+                           
T Consensus       258 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~---------------------------  310 (524)
T 2ec8_A          258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK---------------------------  310 (524)
T ss_dssp             EEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESS---------------------------
T ss_pred             ccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEecc---------------------------
Confidence            111  00   2345689999999999999999999999999999999999875                           


Q ss_pred             CCceEEEcCCcceEEeeecCCeeEEcCC---eeeeeCCCeEEEEEEecccCCce-EEEecCCCCCCCce-EE--------
Q psy17058        393 EGEYVYAVGSNASISCSVEPPRITLRPV---RQTVKPGDIANIRCSAIGATPIS-IRWQPLQGYFPSHV-VE--------  459 (471)
Q Consensus       393 ~~~~~~~~~~~~~y~c~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~l~~~~-~~--------  459 (471)
                                          |.+...+.   ...+.+|+.+.|.|.+.|.|.|. ++|+|||.++.... ++        
T Consensus       311 --------------------p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~  370 (524)
T 2ec8_A          311 --------------------GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN  370 (524)
T ss_dssp             --------------------CEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSC
T ss_pred             --------------------CceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCC
Confidence                                55655443   58899999999999999999998 99999999997654 22        


Q ss_pred             --ecCeEEECCCC
Q psy17058        460 --YNGELRLGPHK  470 (471)
Q Consensus       460 --~~~~l~i~~~~  470 (471)
                        ..++|.|.+++
T Consensus       371 ~~~~~~L~i~~v~  383 (524)
T 2ec8_A          371 IRYVSELHLTRLK  383 (524)
T ss_dssp             CEEEEEEEECSCC
T ss_pred             ceeEEEEEEeecC
Confidence              13578888775

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.2e-38  Score=310.58  Aligned_cols=342  Identities=17%  Similarity=0.213  Sum_probs=239.6

Q ss_pred             eeccceEEEEecCcEEEEEEeeeCCccE-----EEeccchhh---------------hheeeeeeeec------------
Q psy17058         41 SAENHEVTVYEGGDAELKCNTYYAPGRW-----MWLNFYSFL---------------SLIIICLAYLS------------   88 (471)
Q Consensus        41 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~-----~w~~~~~~~---------------~~~~~c~~~~~------------   88 (471)
                      ...++++.|.+|+.++|.|.+..+.+.+     .|.+....+               ...|.|.+...            
T Consensus         3 ~~~P~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~d~gY~C~a~~~~~~~~~~~~l~V   82 (450)
T 1z7z_I            3 SVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV   82 (450)
T ss_dssp             EEESSEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCSSTTTEEEEEEEEECSCBCCEEEEEETTEEEEEECEEEE
T ss_pred             ccCCCceEEecCCcEEEEEEccCCCcccccccceeeecceEecCCCceEEEEEecccCCeeEEEEeCCCCcceeEEEEEE
Confidence            3456789999999999999999877777     888765522               11267877421            


Q ss_pred             -CCCCcEEEcCCceeecCCCcEEEEee-CCCCCC---eEEEEeCCCCCCCCCc----ccCcEEEEcCCCCCCCeEEEEEE
Q psy17058         89 -PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPPNM----IAGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        89 -~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~---~v~W~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                       ..|..+.+.|.+..+.+|+++.|.|. .+.+.+   .|.|+|+ +..+....    .....|.|.+++.+|+|.|+|.|
T Consensus        83 ~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~-g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  161 (450)
T 1z7z_I           83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG-EKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT  161 (450)
T ss_dssp             EBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET-TEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             EeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeC-CEEeecccccccccceEEEEEeeccccCceEEEEE
Confidence             23334446677788999999999999 777776   8999999 55443221    13468999999999999999999


Q ss_pred             EecCCce-------eeeeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCC-C--CCeEEEEeCCCCCCcCC
Q psy17058        160 QNAQGNV-------FQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGE-P--SPTQTWIRPDNDGKFGP  227 (471)
Q Consensus       160 ~~~~~~~-------~~~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~-p--~~~v~W~~~~~~~~~~~  227 (471)
                      .|..+..       .+....+.|...  .+|.+..    ...+.+|+.++|.|.+ .+. |  .+.+.|++++..+..  
T Consensus       162 ~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~----~~~v~~G~~v~l~C~~-~g~~P~~~~~~~W~~~~~~~~~--  234 (450)
T 1z7z_I          162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS----PRVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP--  234 (450)
T ss_dssp             EEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC----CSEEETTSEEEEEEEE-ESCTTGGGCEEEEEETTEECCC--
T ss_pred             EcccCCCCceEEeeccCccceeeeccCCCCCEecC----ceeEEeCCcEEEEEEe-eCCCCCCceEEEEeCCCEeCCc--
Confidence            9976531       112233333321  2222221    1468899999999999 555 7  789999999876443  


Q ss_pred             CceEEeeeceEEE---eccCCCCCe--EEEEEEEcCCCceEEEEEEEEEe--CCceeeCCCccEEecCCCcEEEEEEEee
Q psy17058        228 DVEVYQELGVLRF---NNIATGDEG--KYTCIAENSAGKEVMNAYIHVLT--LPAVTITPSEYVSVRPGEPLTLECEATG  300 (471)
Q Consensus       228 ~~~~~~~~~~l~i---~~~~~~d~G--~Y~C~~~~~~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~g  300 (471)
                      +....  ...+.+   .+++.+|+|  .|+|.+.|..+.....+.|.|..  +|.+...   ...+.+|+.+.|.|.+. 
T Consensus       235 ~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~---~~~v~~G~~v~l~C~~~-  308 (450)
T 1z7z_I          235 TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT---KPEVSEGTEVTVKCEAH-  308 (450)
T ss_dssp             EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES---CSEEETTCEEEEEEEC--
T ss_pred             eEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC---CeeEeCCCcEEEEEecC-
Confidence            22222  222222   267899999  99999999988888888899887  4444433   23788999999999997 


Q ss_pred             cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC----ceEEEEEEEEecCCCCCCCCCCCC
Q psy17058        301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG----TEEKVITVAVEHRPEYGPISPRPG  376 (471)
Q Consensus       301 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~p~~~~~~~~~~  376 (471)
                       |.+.+.|  +|..+..      ......|.|..+..+|+|.|+|.|.|..+    ....++.|.|..+           
T Consensus       309 -p~p~i~W--~g~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~-----------  368 (450)
T 1z7z_I          309 -PRAKVTL--NGVPAQP------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-----------  368 (450)
T ss_dssp             ------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEE-----------
T ss_pred             -CCCEeEE--CCEEcCC------CCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecC-----------
Confidence             8889999  6666521      22345899999999999999999997655    3346788888765           


Q ss_pred             CccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcC--CeeeeeCCCeEEEEEEecccCCceEEEecCCCC
Q psy17058        377 ADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRP--VRQTVKPGDIANIRCSAIGATPISIRWQPLQGY  452 (471)
Q Consensus       377 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~  452 (471)
                                                          |.+...+  .+..+.+|+.+.|.|.+.|+|+|.|+|+|||..
T Consensus       369 ------------------------------------P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~  410 (450)
T 1z7z_I          369 ------------------------------------PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF  410 (450)
T ss_dssp             ------------------------------------EECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE
T ss_pred             ------------------------------------CceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcc
Confidence                                                4554433  567899999999999999999999999999983

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=8.9e-38  Score=299.50  Aligned_cols=321  Identities=23%  Similarity=0.353  Sum_probs=239.1

Q ss_pred             ceeeeccceEEE---EecCcEEEEEEee-eCCccEEEeccchhhh-------------------------heeeeeeeec
Q psy17058         38 QFVSAENHEVTV---YEGGDAELKCNTY-YAPGRWMWLNFYSFLS-------------------------LIIICLAYLS   88 (471)
Q Consensus        38 ~~~~~~~~~~~v---~~g~~~~l~C~~~-~~~~~~~w~~~~~~~~-------------------------~~~~c~~~~~   88 (471)
                      +.+...++++.+   .+|+.+.|.|.+. .|.+.+.|++++..+.                         ..|.|.|...
T Consensus         6 P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~   85 (384)
T 3kld_A            6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS   85 (384)
T ss_dssp             EEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             CEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcC
Confidence            344555666666   5889999999998 5778999998654321                         2478888643


Q ss_pred             C-----CCCcEEE---------cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC-CCcc----cCcEEEEcCC
Q psy17058         89 P-----QANEVQV---------TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP-PNMI----AGETLIINGI  147 (471)
Q Consensus        89 ~-----~~~~v~~---------~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~-~~~~----~~~~L~i~~v  147 (471)
                      .     ....+.+         .+..+.+.+|+.+.|.|.  .+.+.+.+.|+++ +..+. ....    ..+.|.|.++
T Consensus        86 ~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~L~I~~v  164 (384)
T 3kld_A           86 FGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN-EYPSYQDNRRFVSQETGNLYIAKV  164 (384)
T ss_dssp             TEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEET-TEECCCSSSEEECTTTCCEEESSC
T ss_pred             cccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEEC-CCCCEeeccEEEEcCCCcEEEeec
Confidence            1     1222222         123467899999999997  3556789999998 43332 2211    4568999999


Q ss_pred             CCCCCeEEEEEEEecCCceee--eeEEEEEe-----eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCC
Q psy17058        148 TKADEGVYICSIQNAQGNVFQ--DYASIQVD-----KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD  220 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~~~~--~~~~l~v~-----~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~  220 (471)
                      +.+|+|.|+|.|.|..+....  ....+.+.     ....|.+....+....+.+|+.++|.|.+ .+.|.+.+.|++++
T Consensus       165 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~  243 (384)
T 3kld_A          165 EKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA-LGNPVPTILWRRAD  243 (384)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE-EEESCCEEEEEETT
T ss_pred             CHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE-eecCCCcEEEEeCC
Confidence            999999999999998765211  11222222     11234444444556678899999999999 78899999999965


Q ss_pred             CCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee
Q psy17058        221 NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG  300 (471)
Q Consensus       221 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g  300 (471)
                      .. .+..........+.|.|.+++.+|+|.|+|.|.|..|.......|.|..+|.+...+ ....+.+|+++.|.|.+.|
T Consensus       244 ~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~-~~~~v~~g~~v~l~C~~~g  321 (384)
T 3kld_A          244 GK-PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII-NDIHVAMEESVFWECKANG  321 (384)
T ss_dssp             CC-CCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECC-CCEEECTTCCEEEECEEEE
T ss_pred             Cc-cccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCC-CceEecCCCCEEEEeECCc
Confidence            53 222223333336689999999999999999999999998888999999888876654 3568899999999999999


Q ss_pred             cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       301 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      .|.|.+.|++++..+.......  ...++|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       322 ~P~p~i~W~k~g~~l~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          322 RPKPTYRWLKNGDPLLTRDRIQ--IEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             ESCCEEEEEETTEECCCBTTEE--EETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cCCCeEEEEECCEECCCCccEE--EeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            9999999999998876433211  2345899999999999999999999999999999998863

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=4.6e-37  Score=296.73  Aligned_cols=327  Identities=20%  Similarity=0.312  Sum_probs=245.2

Q ss_pred             cccceeeeccceEEEEecCcEEEEEEee-eCCccEEEeccchhh------------------------------hheeee
Q psy17058         35 EVTQFVSAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFL------------------------------SLIIIC   83 (471)
Q Consensus        35 ~~~~~~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~w~~~~~~~------------------------------~~~~~c   83 (471)
                      ..|.+....++++.+.+|+.++|.|.+. .+.+.+.|++++..+                              ...|.|
T Consensus        15 ~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C   94 (404)
T 3p3y_A           15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC   94 (404)
T ss_dssp             CCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEE
T ss_pred             CCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEE
Confidence            3455566667889999999999999998 466789999855321                              123678


Q ss_pred             eeeec--------------CCCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc----cCcEEE
Q psy17058         84 LAYLS--------------PQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI----AGETLI  143 (471)
Q Consensus        84 ~~~~~--------------~~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~  143 (471)
                      .+...              ..+......+....+.+|+.+.|.|.  .+.|.+.+.|++++...+.....    .++.|.
T Consensus        95 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~  174 (404)
T 3p3y_A           95 FARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY  174 (404)
T ss_dssp             EEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEE
T ss_pred             EEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEE
Confidence            77532              11111222234578999999999998  67788999999995554443222    567899


Q ss_pred             EcCCCCCC-CeEEEEEEEecCCceeeee--EEEEEeec-----cCCeeeecC--CCceeEEcCCeEEEEEEccCCCCCCe
Q psy17058        144 INGITKAD-EGVYICSIQNAQGNVFQDY--ASIQVDKR-----EMPRIRIHP--NASQTFIVGDRADIQCVLEAGEPSPT  213 (471)
Q Consensus       144 i~~v~~~D-~G~Y~C~~~~~~~~~~~~~--~~l~v~~~-----~~p~~~~~~--~~~~~v~~g~~~~L~C~~~~~~p~~~  213 (471)
                      |.+++.+| +|.|+|.+.|..+......  ..+.+...     .+|.+....  .....+.+|+.++|.|.+ .+.|.+.
T Consensus       175 i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~  253 (404)
T 3p3y_A          175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA-SGVPTPD  253 (404)
T ss_dssp             ESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB-CCSSCCE
T ss_pred             EEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE-CCCCCCc
Confidence            99999999 5999999998776522222  23333311     112221111  123457899999999999 7888899


Q ss_pred             EEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEE
Q psy17058        214 QTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLT  293 (471)
Q Consensus       214 v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~  293 (471)
                      +.|++++..+..... ......+.|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+. ...+.+|+.+.
T Consensus       254 v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-~~~v~~g~~~~  331 (404)
T 3p3y_A          254 IAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPK-NLILAPGEDGR  331 (404)
T ss_dssp             EEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCC-CEEECTTCCEE
T ss_pred             EEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCC-cceeecCCcEE
Confidence            999999987544332 3444467899999999999999999999999988999999999888776653 56889999999


Q ss_pred             EEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        294 LECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       294 l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      |.|.+.|+|.+.+.|++++..+..... ........+|.|.+++.+|+|.|+|.|.|..|....++.|.|.+
T Consensus       332 l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999988764321 11222446899999999999999999999999999999998864

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.8e-36  Score=278.04  Aligned_cols=269  Identities=24%  Similarity=0.403  Sum_probs=221.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..||.|...|.+..+.+|+.++|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEET-TEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEEC-CEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            36899999999999999999999999 7788899999999 555443221       35789999999999999999999


Q ss_pred             ecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE--eeeceE
Q psy17058        161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY--QELGVL  238 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~l  238 (471)
                      |..+. ......|.|  ..+|.+.........+.+|+.++|.|.+ .+.|.+.+.|++++..+.........  .....|
T Consensus        82 n~~g~-~~~~~~l~V--~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L  157 (284)
T 2rik_A           82 NVAGK-DSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL  157 (284)
T ss_dssp             ETTEE-EEEEEEEEE--ECCCEEEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEE
T ss_pred             ECCce-EEEEEEEEc--cCCCcccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEE
Confidence            98766 444444544  4677766665555668899999999999 67899999999999876655544433  224579


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc
Q psy17058        239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN  318 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~  318 (471)
                      .|.+++.+|+|.|+|.+.|..+.....+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|+|.+.+.|++++..+...
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~  236 (284)
T 2rik_A          158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH-PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG  236 (284)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCC-CEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT
T ss_pred             EECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCC-cceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            9999999999999999999999888899999999888776553 467889999999999999999999999999887643


Q ss_pred             cc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        319 LE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       319 ~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      ..  .........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       237 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            22  1222344789999999999999999999999999999999885

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=307.15  Aligned_cols=319  Identities=13%  Similarity=0.167  Sum_probs=218.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ......+++..+.|.+|++++|.|. .+.+...+.|+++ +..+.....      ...+|.|.+++.+|+|.|+|.+.|.
T Consensus        47 ~~~~~~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~-~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~  125 (527)
T 3qs9_E           47 QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE  125 (527)
T ss_dssp             ---------CEEEECSSCCEEEEEECSCCSSCEEEEEET-TEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred             ccCcceeeeeeEEEeccccEEEEEEEecCCceeEEEEec-CCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEec
Confidence            3344555666889999999999999 6777789999998 443222111      2245999999999999999999987


Q ss_pred             CCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEec
Q psy17058        163 QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN  242 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~  242 (471)
                      .+. ......+.|.    |.....+........|+.+.|.|.+ .+.|.+.++|++++..+.....  .....-......
T Consensus       126 ~~~-~~~~~~v~v~----~~~~~~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~~--~~~~~~~~~~~~  197 (527)
T 3qs9_E          126 ATN-YTILFTVSIR----NTLLYTLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKE--ESPAVVKKEEKV  197 (527)
T ss_dssp             -CE-EEEEEEEEEC---------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC---------------CEEECCSE
T ss_pred             ccc-EEEEEEEEEC----CceeeccCCCcEEecCCceEEEEEE-ceecCCeEEEEECCCCCccccc--cCCcEEEEeeee
Confidence            765 3333333332    2211122222234567888999999 8899999999998765321110  000011122233


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEE-EEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCccc
Q psy17058        243 IATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLE  320 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~  320 (471)
                      +...|+|.|+|.|.|..|..... +.|.|...|.+   +.....+.+|+.+.|.|.+. |.|.+.+.|++++..+.....
T Consensus       198 ~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~  274 (527)
T 3qs9_E          198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY  274 (527)
T ss_dssp             ECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGE
T ss_pred             ccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCce
Confidence            45789999999999998876544 77777766655   33467889999999999996 899999999999988754311


Q ss_pred             c--------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCC
Q psy17058        321 R--------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE  392 (471)
Q Consensus       321 ~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~  392 (471)
                      .        .......+|.|.+++.+|+|.|+|.|.|.   .+.++.|.|..+                           
T Consensus       275 ~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~---------------------------  324 (527)
T 3qs9_E          275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK---------------------------  324 (527)
T ss_dssp             EEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-----------------------------
T ss_pred             eeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEcc---------------------------
Confidence            0        01223467999999999999999999998   677788888765                           


Q ss_pred             CCceEEEcCCcceEEeeecCCeeEEcC--CeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE--ecCeEEECC
Q psy17058        393 EGEYVYAVGSNASISCSVEPPRITLRP--VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE--YNGELRLGP  468 (471)
Q Consensus       393 ~~~~~~~~~~~~~y~c~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~l~i~~  468 (471)
                                          |.+...+  ....+.+|+.+.|.|.+.|+|+|.|+|+|||++|..+...  .+++|.|.+
T Consensus       325 --------------------p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~  384 (527)
T 3qs9_E          325 --------------------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFC  384 (527)
T ss_dssp             --------------------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEEC
T ss_pred             --------------------CccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEec
Confidence                                4444433  2367888999999999999999999999999998665433  466888887


Q ss_pred             CC
Q psy17058        469 HK  470 (471)
Q Consensus       469 ~~  470 (471)
                      ++
T Consensus       385 v~  386 (527)
T 3qs9_E          385 NH  386 (527)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=4.8e-36  Score=288.06  Aligned_cols=316  Identities=22%  Similarity=0.383  Sum_probs=234.6

Q ss_pred             cceeeeccceEEEEecCcEEEEEEee-eCCccEEEec-cchhh------------------------------hheeeee
Q psy17058         37 TQFVSAENHEVTVYEGGDAELKCNTY-YAPGRWMWLN-FYSFL------------------------------SLIIICL   84 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~w~~-~~~~~------------------------------~~~~~c~   84 (471)
                      |.|.......+.+.+|+.++|.|.+. .+.+.+.|++ ++..+                              ...|.|.
T Consensus         4 P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~   83 (388)
T 2v5m_A            4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL   83 (388)
T ss_dssp             EEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEE
T ss_pred             CchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEE
Confidence            33444444567899999999999998 5677999998 43211                              2357888


Q ss_pred             eeecC-------------CCCcEEEcCCceeecCCCcEEEEee-CCCC---CCeEEEEeCCCCCCCC------Ccc--cC
Q psy17058         85 AYLSP-------------QANEVQVTPRQQSAPEGSQVTIECK-SNDP---SATIKWSKDNQEQLPP------NMI--AG  139 (471)
Q Consensus        85 ~~~~~-------------~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~~~~~~~------~~~--~~  139 (471)
                      +....             .+|.+...+....+.+|+.++|.|. .+.+   .+.+.|++++......      +..  ..
T Consensus        84 a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 2v5m_A           84 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS  163 (388)
T ss_dssp             EEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTT
T ss_pred             EEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccC
Confidence            76321             1233333456678999999999999 5443   3789999995433221      111  45


Q ss_pred             cEEEEcCCCCCCC-eEEEEEEEecCCceeeee---EEEEEeecc---CCeeeecCCCceeEEcCCeEEEEEEccCCCCCC
Q psy17058        140 ETLIINGITKADE-GVYICSIQNAQGNVFQDY---ASIQVDKRE---MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP  212 (471)
Q Consensus       140 ~~L~i~~v~~~D~-G~Y~C~~~~~~~~~~~~~---~~l~v~~~~---~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~  212 (471)
                      +.|.|.+++.+|+ |.|+|.+.|..+......   ..+.|....   .|...........+.+|+.++|.|.+ .+.|.+
T Consensus       164 ~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p  242 (388)
T 2v5m_A          164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA-QGFPAP  242 (388)
T ss_dssp             SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC-EEESCC
T ss_pred             CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC-CCCCCC
Confidence            7899999999999 999999998754312211   234444221   12211112233467899999999998 678899


Q ss_pred             eEEEEeCCCCCCcC----CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecC
Q psy17058        213 TQTWIRPDNDGKFG----PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP  288 (471)
Q Consensus       213 ~v~W~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~  288 (471)
                      .+.|++++..+...    .........+.|.|.+++.+|+|.|+|.+.|..|..+..+.|.|..+|.+.+.+. ...+.+
T Consensus       243 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-~~~v~~  321 (388)
T 2v5m_A          243 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP-TQTVDF  321 (388)
T ss_dssp             EEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESS-EEEECT
T ss_pred             EEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCC-cEEecC
Confidence            99999986553211    1112233467899999999999999999999999988899999998888776653 568899


Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |+.+.|.|.+.|+|.+.+.|++++..+..        ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       322 g~~~~l~C~~~g~p~p~i~W~~~g~~i~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          322 GRPAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             TSCEEEEEEEEEECCCEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCEEEEEEeccccCCeEEEEECCEECcc--------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            99999999999999999999999987642        3468999999999999999999999999999998876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.8e-36  Score=288.12  Aligned_cols=318  Identities=19%  Similarity=0.350  Sum_probs=241.5

Q ss_pred             cceeeeccceEEE---EecCcEEEEEEee-eCCccEEEeccchhhh-------------------------heeeeeeee
Q psy17058         37 TQFVSAENHEVTV---YEGGDAELKCNTY-YAPGRWMWLNFYSFLS-------------------------LIIICLAYL   87 (471)
Q Consensus        37 ~~~~~~~~~~~~v---~~g~~~~l~C~~~-~~~~~~~w~~~~~~~~-------------------------~~~~c~~~~   87 (471)
                      ++.+...+.++.+   .+|+.++|.|.+. .+.+.+.|++++..+.                         ..|.|.+..
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   83 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEc
Confidence            4556666777776   7899999999998 5677999997543221                         247888764


Q ss_pred             cC-----CCCcEEE---------cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC--CC--cc---cCcEEEE
Q psy17058         88 SP-----QANEVQV---------TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP--PN--MI---AGETLII  144 (471)
Q Consensus        88 ~~-----~~~~v~~---------~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~--~~--~~---~~~~L~i  144 (471)
                      ..     ....+.+         .+....+.+|+++.|.|.  .+.|.+.+.|+++ +..+.  ..  ..   ..+.|.|
T Consensus        84 ~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i  162 (382)
T 1cs6_A           84 ARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN-EFPNFIPADGRRFVSQTTGNLYI  162 (382)
T ss_dssp             TTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEES-STTCBCCCCSSEEECTTTCCEEE
T ss_pred             CCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEEC-CCccccccCceEEEecCceEEEE
Confidence            21     1122222         134677999999999998  4568889999999 44321  11  11   4478999


Q ss_pred             cCCCCCCCeEEEEEEEecCCce----eeeeEEEEEe----eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEE
Q psy17058        145 NGITKADEGVYICSIQNAQGNV----FQDYASIQVD----KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW  216 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~----~~~~~~l~v~----~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W  216 (471)
                      .+++.+|+|.|+|.+.|..+..    .+....+.+.    ...+|.+....+....+.+|+.++|.|.+ .+.|.+.+.|
T Consensus       163 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W  241 (382)
T 1cs6_A          163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKW  241 (382)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEE
T ss_pred             EeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE-ccCCCCEEEE
Confidence            9999999999999999876431    1122334432    12245555554556678899999999999 6788899999


Q ss_pred             EeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        217 IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ++++..+..    ........|.|.+++.+|+|.|+|.+.|..+.....+.|.|..+|.+...+. ...+.+|+.+.|.|
T Consensus       242 ~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C  316 (382)
T 1cs6_A          242 RKLDGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVIT-DTEADIGSDLRWSC  316 (382)
T ss_dssp             EECCSCCSC----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCC-CEEEETTCCEEEEC
T ss_pred             EECCccccc----EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCC-ccEEcCCCeEEEEE
Confidence            998876433    1223366899999999999999999999999888889999998888776653 56788999999999


Q ss_pred             EEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        297 EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       297 ~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .+.|.|.+.+.|++++..+....+.  ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       317 ~~~g~p~p~v~W~~~g~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          317 VASGKPRPAVRWLRDGQPLASQNRI--EVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEEESCCEEEEEETTEECCCCSSE--EEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeeeecCCEEEEEECCEECCCCceE--EEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9999999999999999887654321  1234589999999999999999999999999999999885

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=6.6e-35  Score=268.64  Aligned_cols=270  Identities=27%  Similarity=0.424  Sum_probs=212.7

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      ++.|.+.|.+..+.+|+++.|.|. .+.+ .+.+.|++.++..+.....         ....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            678999999999999999999999 6655 6899999944665543211         3468999999999999999999


Q ss_pred             EecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE-EeeeceE
Q psy17058        160 QNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-YQELGVL  238 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~l  238 (471)
                      .|..+...  ...+.|.+..+|.+...+ ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........ ...++.|
T Consensus        82 ~n~~g~~~--~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L  157 (291)
T 1qz1_A           82 TAEDGTQS--EATVNVKIFQKLMFKNAP-TPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL  157 (291)
T ss_dssp             ECTTSCEE--EEEEEEEEECCSEEEECC-SSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTEEECTTSCE
T ss_pred             EcCCCCee--EEEEEEEeeccccccCCC-CcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceEEEccCCcE
Confidence            99876523  344455555666665554 35578899999999999 6788899999999987654432222 2235689


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCC-ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccC
Q psy17058        239 RFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF  315 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~  315 (471)
                      .|.+++.+|+|.|+|.+.|..+.  ....+.|.|..+|.+...+. ....+.+|+.+.|.|.+.|.|.+.+.|++++..+
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~  237 (291)
T 1qz1_A          158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI  237 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             EEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEEC
Confidence            99999999999999999986543  34567788888887766543 2347889999999999999999999999999887


Q ss_pred             CCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        316 DRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       316 ~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      ....    ..........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       238 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             CCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            6432    222334457899999999999999999999999999999999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=297.50  Aligned_cols=310  Identities=17%  Similarity=0.272  Sum_probs=220.0

Q ss_pred             EcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCCC--------------CCcc-----cCcEEEEcCCCCCCCeE
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQLP--------------PNMI-----AGETLIINGITKADEGV  154 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~~--------------~~~~-----~~~~L~i~~v~~~D~G~  154 (471)
                      .+|..+.+.+|++++|.|. .+.+.+.+.|+|++ +..+.              .+..     ....|.|.+++.+|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            4467889999999999999 77788999999974 11111              1111     23489999999999999


Q ss_pred             EEEEEEecCCce--eeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCC
Q psy17058        155 YICSIQNAQGNV--FQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPD  228 (471)
Q Consensus       155 Y~C~~~~~~~~~--~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~  228 (471)
                      |+|.+.|..+..  ......|.|..  ..+|.+.+.+.. ..+.+|+.++|.|.+ .+.|+  +.++|+|++..+.....
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~-~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~~  162 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPS-SEELQANKATLVCLI-SDFYPGAVTVAWKADGSPVKAGVE  162 (523)
T ss_pred             EEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCc-ccccCCCceEEEEEe-ccccCCceEEEEecCCCCCCCceE
Confidence            999999876531  22334555532  345666655543 345689999999999 45544  49999999987543321


Q ss_pred             ce--------EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE----EeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        229 VE--------VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV----LTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       229 ~~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V----~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ..        .....+.|.|.++..+|+|.|+|.+.|..+.....+.+.+    ..+|.+..... ...+.+|+.+.|.|
T Consensus       163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~-~~~~~~G~~~~l~C  241 (523)
T 2rcj_C          163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAP-SSKSTSGGTAALGC  241 (523)
T ss_pred             eccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCC-CcccccCCceEEEE
Confidence            11        0111246999999999999999999998776555544422    23455543322 23567899999999


Q ss_pred             EEeec-CCC-eEEEEeCCccCCCcc--cc----cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCC
Q psy17058        297 EATGR-PMP-TVSWVKYIAPFDRNL--ER----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY  368 (471)
Q Consensus       297 ~~~g~-p~~-~i~W~~~~~~~~~~~--~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  368 (471)
                      .+.|. |.+ .+.|++++..+....  ..    ......+.|.|.++..+| |.|+|.|.|..|.....+.|.+...   
T Consensus       242 ~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~---  317 (523)
T 2rcj_C          242 LVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL---  317 (523)
T ss_pred             EEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC---
Confidence            99886 877 899999998754211  00    011224589999999999 9999999999999877777766543   


Q ss_pred             CCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCee-EEcCCeee-eeCCCeEEEEEEecccCC----c
Q psy17058        369 GPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRI-TLRPVRQT-VKPGDIANIRCSAIGATP----I  442 (471)
Q Consensus       369 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~g~p~----~  442 (471)
                                                                  |.+ ...+.... +.+|+.+.|.|.+.|.|+    +
T Consensus       318 --------------------------------------------P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~  353 (523)
T 2rcj_C          318 --------------------------------------------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQV  353 (523)
T ss_pred             --------------------------------------------ceEEecCCCchhhcccCCceEEEEEEecccCCCCce
Confidence                                                        343 33343333 788999999999999754    4


Q ss_pred             eEEEecCCCCCCCc
Q psy17058        443 SIRWQPLQGYFPSH  456 (471)
Q Consensus       443 ~v~W~~~g~~l~~~  456 (471)
                      .|+|+|||.+|...
T Consensus       354 ~v~W~k~g~~l~~~  367 (523)
T 2rcj_C          354 KFNWYVDGVQVHNA  367 (523)
T ss_pred             EEEEEECCeEccCC
Confidence            99999999988654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=3.4e-37  Score=322.58  Aligned_cols=410  Identities=19%  Similarity=0.281  Sum_probs=127.3

Q ss_pred             eeeccceEEEEecCcEEEEEEeeeCCccEEEeccc---------------h---hhh---------heeeeeeeec----
Q psy17058         40 VSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFY---------------S---FLS---------LIIICLAYLS----   88 (471)
Q Consensus        40 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~w~~~~---------------~---~~~---------~~~~c~~~~~----   88 (471)
                      +....+.+.+.+|+.++|.|.+.. ...|.|....               .   .+.         ..|.|.+...    
T Consensus        34 l~~~~~~~~v~~G~~vtL~C~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~C~~~~~~~~~  112 (772)
T 3v2a_R           34 LSIQKDILTIKANTTLQITCRGQR-DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS  112 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCCeEEEcCCCCEEEEEeccC-CeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEEEEEcCCCEEE
Confidence            344556789999999999999763 2233332211               0   000         1257765311    


Q ss_pred             --------CCCCcE---EEcCCceeecCC--CcEEEEeeCCCCCCeEEEEeC--CCCCCCCCc----ccCcEEEEcCCCC
Q psy17058         89 --------PQANEV---QVTPRQQSAPEG--SQVTIECKSNDPSATIKWSKD--NQEQLPPNM----IAGETLIINGITK  149 (471)
Q Consensus        89 --------~~~~~v---~~~p~~~~v~~G--~~v~l~C~~~~p~~~v~W~~~--~~~~~~~~~----~~~~~L~i~~v~~  149 (471)
                              +.+|.+   ...+..+.+.+|  +.++|.|....|.+.+.|+++  ++.......    .....|.|.+++.
T Consensus       113 ~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  192 (772)
T 3v2a_R          113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI  192 (772)
T ss_dssp             -------------------CEEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGT
T ss_pred             EEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCCCceeecCCCCCeEecCCCh
Confidence                    112222   122445678889  899999994447789999996  444443321    1567899999999


Q ss_pred             CCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCCcCCC
Q psy17058        150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGKFGPD  228 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~~~~~  228 (471)
                      +|+|.|+|.+.+......+....+.+.....+.+.+.+.....+.+|+.++|.|.+... .+.+.+.|++++..+.....
T Consensus       193 ~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~  272 (772)
T 3v2a_R          193 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL  272 (772)
T ss_dssp             TTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------C
T ss_pred             hhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCcee
Confidence            99999999999764432222233444433445566666655678999999999999432 55679999999876433221


Q ss_pred             c----------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCC--CccEEecCCCcEEEEE
Q psy17058        229 V----------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLEC  296 (471)
Q Consensus       229 ~----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~~g~~v~l~C  296 (471)
                      .          ......+.|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+  .....+.+|+.+.|.|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C  352 (772)
T 3v2a_R          273 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA  352 (772)
T ss_dssp             EEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------
T ss_pred             eeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEE
Confidence            1          112235679999999999999999999998888888999999888766543  2235688999999999


Q ss_pred             EEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEEEEecCCCCCCCCCC
Q psy17058        297 EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPR  374 (471)
Q Consensus       297 ~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~  374 (471)
                      .+.|+|.+.+.|++++..+.....   ......|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.+......
T Consensus       353 ~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~  429 (772)
T 3v2a_R          353 KYLGYPPPEIKWYKNGIPLESNHT---IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI  429 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeeeCCCeEEEEECCEeCCCCce---EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccC
Confidence            999999999999999988765332   2255889999999999999999999998865  45677777777654322110


Q ss_pred             CCCccccC-----------------CCcccCC----C----------------------------------------CC-
Q psy17058        375 PGADILPD-----------------GDEYYRP----E----------------------------------------PE-  392 (471)
Q Consensus       375 ~~~~~~~~-----------------~~~w~~~----~----------------------------------------~~-  392 (471)
                      ........                 ...|...    .                                        .+ 
T Consensus       430 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  509 (772)
T 3v2a_R          430 SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEG  509 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccC
Confidence            00000111                 1256321    0                                        01 


Q ss_pred             -----CCceEEEcCCcceEEe----------------eecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCC
Q psy17058        393 -----EGEYVYAVGSNASISC----------------SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG  451 (471)
Q Consensus       393 -----~~~~~~~~~~~~~y~c----------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~  451 (471)
                           ..+.|.++.....|+|                +..+|.+...+. ..+.+|+.+.|.|.+.|.|.+.++|+|+|.
T Consensus       510 ~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~  588 (772)
T 3v2a_R          510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGP  588 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEEEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCC
Confidence                 1124444422223999                555777766554 457899999999999999999999999997


Q ss_pred             CCC
Q psy17058        452 YFP  454 (471)
Q Consensus       452 ~l~  454 (471)
                      .+.
T Consensus       589 ~~~  591 (772)
T 3v2a_R          589 QPL  591 (772)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.9e-35  Score=284.58  Aligned_cols=319  Identities=21%  Similarity=0.347  Sum_probs=238.6

Q ss_pred             cceeeeccceEEEEecCcEEEEEEeee--CCccEEEeccchhhh-------------------------heeeeeeeecC
Q psy17058         37 TQFVSAENHEVTVYEGGDAELKCNTYY--APGRWMWLNFYSFLS-------------------------LIIICLAYLSP   89 (471)
Q Consensus        37 ~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~~~w~~~~~~~~-------------------------~~~~c~~~~~~   89 (471)
                      ++.+...+.++.+.+|+.++|.|.+..  +...+.|++++..+.                         ..|.|.+....
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   85 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   85 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCC
Confidence            556667788999999999999999986  667899998654321                         13688876321


Q ss_pred             -----CCCcEEE--------cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCC--CCC------CCCcc--cCcEEEE
Q psy17058         90 -----QANEVQV--------TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQ--EQL------PPNMI--AGETLII  144 (471)
Q Consensus        90 -----~~~~v~~--------~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~--~~~------~~~~~--~~~~L~i  144 (471)
                           ....+.+        .|....+.+|+.+.|.|.  .+.|.+.+.|++++.  ...      .....  ..+.|.|
T Consensus        86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  165 (395)
T 1bih_A           86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF  165 (395)
T ss_dssp             EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEE
T ss_pred             CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEE
Confidence                 1111111        234567889999999999  577889999999841  111      11111  4568999


Q ss_pred             cCCCCCCCe---EEEEEEEecCCceeeeeEEEEEeecc----------CCeeeecCCCceeEEcCCeEEEEEEccCCCCC
Q psy17058        145 NGITKADEG---VYICSIQNAQGNVFQDYASIQVDKRE----------MPRIRIHPNASQTFIVGDRADIQCVLEAGEPS  211 (471)
Q Consensus       145 ~~v~~~D~G---~Y~C~~~~~~~~~~~~~~~l~v~~~~----------~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~  211 (471)
                      .+++.+|+|   .|+|.+.|..+..........+....          .|.+  . .....+.+|+.++|.|.+ .+.|.
T Consensus       166 ~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~-~~~~~~~~G~~v~l~C~~-~g~p~  241 (395)
T 1bih_A          166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--V-SKDMMAKAGDVTMIYCMY-GSNPM  241 (395)
T ss_dssp             EEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--E-CCSEEEETTSCEEEEEEE-ECSSC
T ss_pred             EEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--c-CCceEEECCCcEEEEEEe-ccCCC
Confidence            999999999   99999999887622211111222111          1222  1 345578899999999999 78899


Q ss_pred             CeEEEEeCCCCCCcCCCceEEe----eeceEEEeccCCCCCeEEEEEEEcCCCceEE-EEEEEEEeCCceeeCCCccEEe
Q psy17058        212 PTQTWIRPDNDGKFGPDVEVYQ----ELGVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSV  286 (471)
Q Consensus       212 ~~v~W~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~V~~~p~~~~~~~~~~~~  286 (471)
                      +.+.|++++..+.......+..    .+..|.|.++..+|+|.|+|.+.|..+.... .+.|.|..+|.+...+.....+
T Consensus       242 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~  321 (395)
T 1bih_A          242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVV  321 (395)
T ss_dssp             CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEE
T ss_pred             CeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEe
Confidence            9999999987755433322221    1237999999999999999999999888554 8899999999888776544688


Q ss_pred             cCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      .+|+.+.|.|.+.|+|.+.+.|++++..+.....   ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       322 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA---TVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CTTSCEEEECEEEEESCCCCEEEETTEECCSSSE---EEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECcccCCeeEEEECCEECCCCce---EEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            9999999999999999999999999988764311   112349999999999999999999999999999998887

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=3.4e-35  Score=286.87  Aligned_cols=318  Identities=19%  Similarity=0.323  Sum_probs=220.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCC----CeEEEEeCC-CCCC--------------CCCcc-----cCcEEEEcCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPS----ATIKWSKDN-QEQL--------------PPNMI-----AGETLIINGI  147 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~----~~v~W~~~~-~~~~--------------~~~~~-----~~~~L~i~~v  147 (471)
                      .|...|..+.+.+|++++|.|. .+.+.    +.+.|++++ +..+              ..+..     ....|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            4666688899999999999999 66665    489999973 2211              11211     2348999999


Q ss_pred             CCCCCeEEEEEEEecCCceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCc
Q psy17058        148 TKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKF  225 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~  225 (471)
                      +.+|+|.|+|.+.+..+........+.|... .+|.+.+.+... ...+|+.++|.|.+....|.+ .++|+|++..+..
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  161 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  161 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence            9999999999999877642344556666533 256665544332 234688999999995446776 9999999876433


Q ss_pred             CC---------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        226 GP---------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       226 ~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ..         ........+.|.|.++..+|+|.|+|.+.|..+.......+.+...+ +.+.......+.+|+++.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~G~~v~L~C  240 (438)
T 1qgc_4          162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECE-VMLVESGGGLVKPGGSLKLSC  240 (438)
T ss_dssp             TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-C-CEEEEECCEEECTTCCEEEEE
T ss_pred             CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccce-eEEecCCceEEecCCcEEEEE
Confidence            20         00011124579999999999999999999987765333333221112 222222356789999999999


Q ss_pred             EEeecC--CCeEEEEeC--CccCCC-------------------cccc--cccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        297 EATGRP--MPTVSWVKY--IAPFDR-------------------NLER--DELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       297 ~~~g~p--~~~i~W~~~--~~~~~~-------------------~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      .+.|.|  .+.+.|+++  +..+..                   ....  ........|.|.+++.+|+|.|+|.|.|..
T Consensus       241 ~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  320 (438)
T 1qgc_4          241 TASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDG  320 (438)
T ss_dssp             EEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSS
T ss_pred             EEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccC
Confidence            999988  569999997  433210                   0000  011235689999999999999999999954


Q ss_pred             C-----ceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeC
Q psy17058        352 G-----TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKP  426 (471)
Q Consensus       352 g-----~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~  426 (471)
                      +     .......|.|...+                                           ..+|.+...+....+.+
T Consensus       321 ~~~~~~~~~~~~~l~V~~~~-------------------------------------------~~~P~v~~~~~~~~~~~  357 (438)
T 1qgc_4          321 GDEGFAYWGQGTVVTVSAAK-------------------------------------------TTPPSVYPLAPGSAAAA  357 (438)
T ss_dssp             SCCCCCSBCCCEEEEECSSC-------------------------------------------CBCCEEEEECCCGGGCC
T ss_pred             CCccceeeCCCEEEEEecCC-------------------------------------------CCCCeEEEcCccccccc
Confidence            4     22234567776432                                           12466665555556778


Q ss_pred             CCeEEEEEEeccc-CCc-eEEEecCCCCCCC
Q psy17058        427 GDIANIRCSAIGA-TPI-SIRWQPLQGYFPS  455 (471)
Q Consensus       427 g~~~~l~C~~~g~-p~~-~v~W~~~g~~l~~  455 (471)
                      |+.+.|.|.+.|. |.+ .|+|+|||.++..
T Consensus       358 g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~  388 (438)
T 1qgc_4          358 ASMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  388 (438)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEGGGTCCSSE
T ss_pred             CCcEEEEEEeccccCCCcEEEEecCCCCCce
Confidence            9999999999997 877 9999999999864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=266.69  Aligned_cols=271  Identities=23%  Similarity=0.406  Sum_probs=207.7

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .+|.+.+.|.++.+.+|+.+.|.|. .+.|. .+.|+++++..+.....       ....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            5789999999999999999999999 66664 89999954666544322       235899999999999999999999


Q ss_pred             cCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC--CCceEEeeeceEE
Q psy17058        162 AQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG--PDVEVYQELGVLR  239 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~  239 (471)
                      ..+....  ..+.|.+..+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+...  .++... .++.|.
T Consensus        82 ~~g~~~~--~~~~l~v~~~~~~~~~~-~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~  156 (291)
T 2wim_A           82 AKGQTQE--ATVVLEIYQKLTFREVV-SPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAML-ANNNLQ  156 (291)
T ss_dssp             SSSCEEE--EEEEEEEECCCBCCSCC-CSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEEEC-TTSCEE
T ss_pred             ccCceEE--EEEEEEecCCcceEeCC-CChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEEEc-cCCCEE
Confidence            8776333  34444444555544333 35578899999999999 77888999999998875532  233332 256799


Q ss_pred             EeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCc-cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCC
Q psy17058        240 FNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD  316 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~  316 (471)
                      |.+++..|+|.|+|.+.|..+.  ....+.+.+..+|.+...+.. ...+.+|+.+.|.|.+.|+|.+.+.|++++..+.
T Consensus       157 i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~  236 (291)
T 2wim_A          157 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE  236 (291)
T ss_dssp             ETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECC
T ss_pred             EEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECc
Confidence            9999999999999999988754  345667788888877654432 2367789999999999999999999999998876


Q ss_pred             CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       317 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .............|.|.++..+|+|.|+|.|.|..|..+.++.|.|..++
T Consensus       237 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          237 ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             CTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             CCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            54433334456789999999999999999999999999999999998764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.9e-35  Score=281.15  Aligned_cols=272  Identities=17%  Similarity=0.219  Sum_probs=212.6

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCc--------ccCcEEEEcCCCCCCCeEE
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNM--------IAGETLIINGITKADEGVY  155 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~--------~~~~~L~i~~v~~~D~G~Y  155 (471)
                      .+.+.+|+++.|.|. .+.|.+.+.|++++...+               ..+.        .....|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            457899999999999 788899999999943211               1111        0256799999999999999


Q ss_pred             EEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee
Q psy17058        156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL  235 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  235 (471)
                      +|.+.|..     ....|.|..     +...+.  ..+.+|+.++|.|.+ .+.|.+.+.|++++..+        ....
T Consensus        83 ~C~~~n~~-----~~~~l~V~~-----~~~~~~--~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~--------~~~~  141 (363)
T 1wio_A           83 ICEVEDQK-----EEVQLLVFG-----LTANSD--THLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN--------IQGG  141 (363)
T ss_dssp             EEEETTEE-----EEEEEEEEE-----EEESSC--SSEESBSCEEEEEEC-CTTCCCCEEEECSSSCE--------EEES
T ss_pred             EEEEEECC-----CcEEEEEEe-----CCCCCc--eEEecCCCEEEEEEc-CCCCCCeEEEEcCCCcc--------cccc
Confidence            99998753     244555542     223332  367899999999999 66888999999987652        2346


Q ss_pred             ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-----cCCCeEEEEe
Q psy17058        236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-----RPMPTVSWVK  310 (471)
Q Consensus       236 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~i~W~~  310 (471)
                      ..|.|.+++.+|+|.|+|.+.|..+.....+.|.|..+|...    ....+.+|+.+.|.|.+.+     +|.+.+.|++
T Consensus       142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~  217 (363)
T 1wio_A          142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA  217 (363)
T ss_dssp             SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEE
T ss_pred             eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccccCCCceeEEEec
Confidence            789999999999999999999887666777778887666543    3457889999999998887     7788999999


Q ss_pred             CCccCCCc--------ccccc------------cCceeEEEEeecCCCCCeEEEEEEEcC--CCceEEEEEEEEecCCCC
Q psy17058        311 YIAPFDRN--------LERDE------------LTSRAVYTIASVRESDAGQYKCIGKNS--AGTEEKVITVAVEHRPEY  368 (471)
Q Consensus       311 ~~~~~~~~--------~~~~~------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~p~~  368 (471)
                      ++..+...        .....            ......|.|.+++.+|+|.|+|.|.|.  .|..+..+.|.|...   
T Consensus       218 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v---  294 (363)
T 1wio_A          218 ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA---  294 (363)
T ss_dssp             SSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE---
T ss_pred             CCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe---
Confidence            99876541        11000            122459999999999999999999999  998888888888531   


Q ss_pred             CCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCce--EEE
Q psy17058        369 GPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPIS--IRW  446 (471)
Q Consensus       369 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W  446 (471)
                                                                               .|+.+.|.|.+.|.|+|.  ++|
T Consensus       295 ---------------------------------------------------------~g~~~~l~C~~~g~p~p~~~i~W  317 (363)
T 1wio_A          295 ---------------------------------------------------------TQLQKNLTCEVWGPTSPKLMLSL  317 (363)
T ss_dssp             ---------------------------------------------------------CCCSSSEEEEEESSCCTTCCEEE
T ss_pred             ---------------------------------------------------------cCCCeeEEEEEccccCCCccEEE
Confidence                                                                     188899999999999988  999


Q ss_pred             ecCCCCCCCc
Q psy17058        447 QPLQGYFPSH  456 (471)
Q Consensus       447 ~~~g~~l~~~  456 (471)
                      +|||+.+..+
T Consensus       318 ~~~~~~~~~~  327 (363)
T 1wio_A          318 KLENKEAKVS  327 (363)
T ss_dssp             ECSSSSCSEE
T ss_pred             EeCCCceeee
Confidence            9999998754

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-35  Score=281.50  Aligned_cols=315  Identities=15%  Similarity=0.139  Sum_probs=211.9

Q ss_pred             eeccceEEEEecCcEEEEEEee-eCCccEEEeccchhhh-------------------------heeeeeeeecCC----
Q psy17058         41 SAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFLS-------------------------LIIICLAYLSPQ----   90 (471)
Q Consensus        41 ~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~w~~~~~~~~-------------------------~~~~c~~~~~~~----   90 (471)
                      +..+.++.|.+|+.++|.|.+. .+.+.+.|++....+.                         ..|.|.+.....    
T Consensus        52 ~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~  131 (423)
T 3qs7_E           52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (423)
T ss_dssp             ----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             eeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEE
Confidence            3344589999999999999998 4556889986542110                         236787753211    


Q ss_pred             CCcEEEc-------CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcC-CCCCCCeEEEEEE
Q psy17058         91 ANEVQVT-------PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIING-ITKADEGVYICSI  159 (471)
Q Consensus        91 ~~~v~~~-------p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~-v~~~D~G~Y~C~~  159 (471)
                      ...+.+.       ..+..+..|+.+.|.|. .+.|.+.++|+++++ .......  ....+.... ++..|+|.|+|.|
T Consensus       132 ~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~-~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A  210 (423)
T 3qs7_E          132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDS-QGESCKEESPAVVKKEEKVLHELFGTDIRCCA  210 (423)
T ss_dssp             EEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEEEEE
T ss_pred             EEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCC-CCccccccccccccccceEEecccCeEEEEEE
Confidence            1112221       12234567888999999 899999999999844 3321100  111111111 1578999999999


Q ss_pred             EecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCce--------E
Q psy17058        160 QNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE--------V  231 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~--------~  231 (471)
                      .|..|....  ..+.|.+...|..   +.....+.+|+.++|.|.+....|.+.++|+|++..+.......        .
T Consensus       211 ~N~~G~~~~--~~~~l~V~~~p~~---~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~  285 (423)
T 3qs7_E          211 RNELGRECT--RLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT  285 (423)
T ss_dssp             ECSSCEEEE--ECEEEESSSCCCS---STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE
T ss_pred             EcCCCCcce--eeEEEEEecCCcc---CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCce
Confidence            999886322  3344544444443   23356788999999999994337779999999998754332110        1


Q ss_pred             EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCC-ccEEecCCCcEEEEEEEeecCCCeEEEEe
Q psy17058        232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVK  310 (471)
Q Consensus       232 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~~i~W~~  310 (471)
                      ....+.|.|.+++.+|+|.|+|.|.|.   .+..+.|.|..+|.+.+.+. ....+.+|+++.|.|.+.|+|.|.+.|+|
T Consensus       286 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k  362 (423)
T 3qs7_E          286 MIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF  362 (423)
T ss_dssp             EEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred             eEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE
Confidence            222457999999999999999999887   77788899999888776653 34567899999999999999999999999


Q ss_pred             CCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        311 YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ++..+.....  .......+.+.....+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus       363 ~g~~l~~~~~--~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          363 SRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             TTEEEECBCC--BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             CCEECCCccc--cccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence            9988754321  01112233335667789999999999999999999999999876

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=265.25  Aligned_cols=269  Identities=26%  Similarity=0.495  Sum_probs=200.0

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc-c-------cCcEEEEcCCCC-CCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-I-------AGETLIINGITK-ADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~-~-------~~~~L~i~~v~~-~D~G~Y~C~  158 (471)
                      ..+|.|...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+.... .       ....|.|.+++. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~-g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC--------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEEC-CEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46889999999999999999999999 8889999999999 54443321 1       126899999998 999999999


Q ss_pred             EEecCCceeeeeEEEEEeecc-----CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC---Cce
Q psy17058        159 IQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP---DVE  230 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~~-----~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~---~~~  230 (471)
                      +.|..+. ....+.|.|....     .|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....   +..
T Consensus        83 a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~-~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           83 AQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGP-QLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             EECSSCE-ECCEEEEEEECGGGCCTTCCEEEECC-CCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             EECCCCe-EEEEEEEEEeccccCCCCCCeeecCC-ccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEE
Confidence            9998887 6666777776332     14554444 45568899999999999 788999999999987654332   222


Q ss_pred             EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE-EEEEEE---eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeE
Q psy17058        231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV  306 (471)
Q Consensus       231 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i  306 (471)
                       ....+.|.|.+++.+|+|.|+|.+.|..+..... ..|.|.   .+|.+...+. ...+.+|+.+.|.|.+.|+|.+.+
T Consensus       160 -~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~-~~~v~~G~~v~l~C~~~g~p~p~v  237 (304)
T 2yd9_A          160 -QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM-SHEIMPGGNVNITCVAVGSPMPYV  237 (304)
T ss_dssp             -ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCC-CBCCCTTCCEEEEEEEEEESCCEE
T ss_pred             -eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCC-ceEEcCCCeEEEEEEEeeeCCCEE
Confidence             2225689999999999999999999988765422 445553   4566655543 457889999999999999999999


Q ss_pred             EEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCC
Q psy17058        307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE  367 (471)
Q Consensus       307 ~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  367 (471)
                      .|++++..+.....  .......|.|.++  +|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus       238 ~W~~~~~~l~~~~~--~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          238 KWMQGAEDLTPEDD--MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             EEEETTEECSCSSS--CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             EEEECCEECCCccc--ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            99999988764432  1233445666655  699999999999999999999999988763

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.2e-34  Score=282.11  Aligned_cols=307  Identities=17%  Similarity=0.199  Sum_probs=210.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeE-----EEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATI-----KWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v-----~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      +|.+.|.+..+.+|++++|.|. .+ |.+.+     .|+|+ +..+...  ....|.|.+++. |+| |+|.+.+..+. 
T Consensus         1 ~i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~-~~~~~~~--~~~~l~i~~v~~-d~g-Y~C~a~~~~~~-   73 (450)
T 1z7z_I            1 QTSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKK-ELLLPGN--NRKVYELSNVQE-DSQ-PMCYSNCPDGQ-   73 (450)
T ss_dssp             CCEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEE-ECCSSTT--TEEEEEEEEECS-CBC-CEEEEEETTEE-
T ss_pred             CcccCCCceEEecCCcEEEEEEccC-CCcccccccceeeec-ceEecCC--CceEEEEEeccc-CCe-eEEEEeCCCCc-
Confidence            3678899999999999999999 56 88888     99998 4433221  234899999987 999 99999765443 


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC---eEEEEeCCCCCCcCCCceEEeeeceEEEecc
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP---TQTWIRPDNDGKFGPDVEVYQELGVLRFNNI  243 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~  243 (471)
                      .+..+.|.|.  .+|......+....+.+|+.++|.|.+ .+.|.+   .++|+|++..+....... ....+.|.|.++
T Consensus        74 ~~~~~~l~V~--~~P~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~~~~-~~~~~~L~i~~~  149 (450)
T 1z7z_I           74 STAKTFLTVY--WTPERVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREPAVG-EPAEVTTTVLVR  149 (450)
T ss_dssp             EEEECEEEEE--BCCSEEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECC
T ss_pred             ceeEEEEEEE--eCCCcceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeecccccc-cccceEEEEEee
Confidence            4445555555  456555443444578899999999999 666666   999999987644322111 122458999999


Q ss_pred             CCCCCeEEEEEEEcCCCceE--------EEEEEEEEeC----CceeeCCCccEEecCCCcEEEEEEEeec-C--CCeEEE
Q psy17058        244 ATGDEGKYTCIAENSAGKEV--------MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGR-P--MPTVSW  308 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~~~--------~~~~l~V~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p--~~~i~W  308 (471)
                      ..+|+|.|+|.+.|..+...        ....|.|...    |.+..    ...+.+|+.+.|.|.+.|. |  .+.+.|
T Consensus       150 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~----~~~v~~G~~v~l~C~~~g~~P~~~~~~~W  225 (450)
T 1z7z_I          150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS----PRVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (450)
T ss_dssp             SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC----CSEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred             ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC----ceeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence            99999999999999865421        2234445433    21111    1478899999999999998 7  679999


Q ss_pred             EeCCccCCCcccccccCceeEEE-EeecCCCCCe--EEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCc
Q psy17058        309 VKYIAPFDRNLERDELTSRAVYT-IASVRESDAG--QYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE  385 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~l~-i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~  385 (471)
                      ++++..+.....  .......+. ..+++.+|+|  .|+|.|.|..|.....+.|.|...|                   
T Consensus       226 ~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-------------------  284 (450)
T 1z7z_I          226 ALGDQRLNPTVT--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-------------------  284 (450)
T ss_dssp             EETTEECCCEEE--EETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC-------------------
T ss_pred             eCCCEeCCceEE--ecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC-------------------
Confidence            999988765322  111121211 2267899999  9999999999999889999998764                   


Q ss_pred             ccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEEecCeEE
Q psy17058        386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELR  465 (471)
Q Consensus       386 w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~~~~l~  465 (471)
                                                +|.|...  ...+.+|+.+.|.|.+.  |.|.++|  ||.++....  ...+|.
T Consensus       285 --------------------------~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~--~~~~L~  330 (450)
T 1z7z_I          285 --------------------------APNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG--PRAQLL  330 (450)
T ss_dssp             --------------------------CCEEEES--CSEEETTCEEEEEEEC--------------------C--CCCCEE
T ss_pred             --------------------------CCeEecC--CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC--ceEEEE
Confidence                                      5777654  45899999999999998  8899999  888883211  234566


Q ss_pred             ECCC
Q psy17058        466 LGPH  469 (471)
Q Consensus       466 i~~~  469 (471)
                      |.++
T Consensus       331 i~~~  334 (450)
T 1z7z_I          331 LKAT  334 (450)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            6554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=8.1e-33  Score=280.13  Aligned_cols=300  Identities=16%  Similarity=0.246  Sum_probs=219.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCCC---CeEEEEeCCCCCC---------------CCCcc-------cCcEEEEcCCCCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPS---ATIKWSKDNQEQL---------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~~~~~---------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      .|..+.+.+|+++.|.|. .+.+.   ..+.|+|++....               ..+..       ....|+|.+++.+
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            466788999999999999 55543   3899999943210               11111       1247999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC------
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK------  224 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~------  224 (471)
                      |+|.|+|.+.+..+. ....  +.|.+..+|.+... .....+.+|+.++|.|.+..+.+.+.+.|+|++....      
T Consensus        86 D~G~Y~C~~~n~~~~-~~~~--~~l~V~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~  161 (585)
T 2ocw_A           86 DSGRYKCGLGINSRG-LSFD--VSLEVSQGPGLLND-TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS  161 (585)
T ss_pred             cCEEEEEEcccCCCC-ceEE--EEEEEecCccccCC-CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecC
Confidence            999999999987766 4444  44444466665443 4456788999999999995455667899999876522      


Q ss_pred             -------cCCCceEEeeec-----eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcE
Q psy17058        225 -------FGPDVEVYQELG-----VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL  292 (471)
Q Consensus       225 -------~~~~~~~~~~~~-----~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v  292 (471)
                             ...+..+...+.     .|.|.+++.+|+|.|+|.+.|..+.....+.|.|..++      +..+.+.+|+.+
T Consensus       162 ~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------p~~~~~~~G~~v  235 (585)
T 2ocw_A          162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE------PELVYEDLRGSV  235 (585)
T ss_pred             CcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC------CceeEEcCCCcE
Confidence                   123344433222     79999999999999999999998888888888887643      223467899999


Q ss_pred             EEEEEEeecCC---CeEEEE-eCCccCC--------------Ccccccc--cCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        293 TLECEATGRPM---PTVSWV-KYIAPFD--------------RNLERDE--LTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       293 ~l~C~~~g~p~---~~i~W~-~~~~~~~--------------~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .|.|.+ +.|.   +.+.|+ +++....              .......  .....+|.|.+++.+|+|.|+|.|.|..+
T Consensus       236 ~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~  314 (585)
T 2ocw_A          236 TFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ  314 (585)
T ss_pred             EEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCC
Confidence            999997 4444   578896 7774221              0000000  12223899999999999999999999643


Q ss_pred             ceE----EEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCC
Q psy17058        353 TEE----KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGD  428 (471)
Q Consensus       353 ~~~----~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~  428 (471)
                      ...    ..+.|.|..+                                               |.+...+....+.+|+
T Consensus       315 ~~~~~~~~~~~l~V~~~-----------------------------------------------p~~~~~~~~~~~~~G~  347 (585)
T 2ocw_A          315 LQEGSPIQAWQLFVNEE-----------------------------------------------STIPRSPTVVKGVAGS  347 (585)
T ss_pred             ccccCceeeEEEEEecc-----------------------------------------------cccccCCcceEEEeCC
Confidence            332    7788888765                                               5666667778899999


Q ss_pred             eEEEEEEecccCCceE----EEec--CCC--CCC
Q psy17058        429 IANIRCSAIGATPISI----RWQP--LQG--YFP  454 (471)
Q Consensus       429 ~~~l~C~~~g~p~~~v----~W~~--~g~--~l~  454 (471)
                      .+.|.|.+.|.|.+.+    +|+|  ||.  .|.
T Consensus       348 ~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~  381 (585)
T 2ocw_A          348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV  381 (585)
T ss_pred             cEEEEEecCCCCCccEEEEEEEEccCCCCCceee
Confidence            9999999999999977    8999  997  553

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=4.2e-33  Score=256.48  Aligned_cols=262  Identities=15%  Similarity=0.226  Sum_probs=197.0

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      ..+|.|...+....+.+|++++|.|. .+    .+.|+++ +..+......+..|.|.+++.+|+|.|+|.+.|  +.  
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~--   80 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFK-TYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN--GL--   80 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEE-CSSSCEEEECSSEEEETTCCGGGCEEEEEEESS--SC--
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecC-CcceeeecCCCceEEEeccCHHhCeEEEEEeeC--Cc--
Confidence            46788888888999999999999999 54    8999999 544421122458999999999999999999998  32  


Q ss_pred             eeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEE-eCCCCCCcCCCceEEeeeceEEEeccCC
Q psy17058        168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWI-RPDNDGKFGPDVEVYQELGVLRFNNIAT  245 (471)
Q Consensus       168 ~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~  245 (471)
                      .....|.|.  .+|.... ......+.+|+.++|.|.+ .+ |. +.+.|+ +++..+....++.... ...|.|.+++.
T Consensus        81 ~~~~~l~V~--~~~~~~~-~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~l~~~~~~~~~~-~~~L~i~~v~~  154 (290)
T 2o26_X           81 TSSIYVFVR--DPAKLFL-VGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKSLPTDLTFVPNP-KAGITIKNVKR  154 (290)
T ss_dssp             EEEEEEEEE--CSSCCBC-CCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCCCCTTCEEEEET-TTEEEEESCCG
T ss_pred             cEEEEEEEe--CCCcccc-cccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcCCCCCCceeeCC-CCCEEEecccH
Confidence            344455554  4555443 3445678899999999999 44 77 899995 6776654444333333 56899999999


Q ss_pred             CCCe-EEEEEEEcCCCce-EEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeecCCCe-EEEEeCCccC---
Q psy17058        246 GDEG-KYTCIAENSAGKE-VMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPF---  315 (471)
Q Consensus       246 ~d~G-~Y~C~~~~~~~~~-~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~---  315 (471)
                      +|+| .|+|.+.|..+.. +..+.|.|.    .+|.+...+.. ..+.+|+.+.|.|.+.|.|.+. +.|++++..+   
T Consensus       155 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~-~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~  233 (290)
T 2o26_X          155 AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS-HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI  233 (290)
T ss_dssp             GGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSB-CCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEEC
T ss_pred             HHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCc-ceEecCCcEEEEEEEecCCcceeEEEecCCCCCccc
Confidence            9999 9999999985442 335777776    56777666543 4788999999999999999996 9999998873   


Q ss_pred             -CCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        316 -DRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       316 -~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                       .....     .......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             eeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence             21111     0123456789999999999999999999999999999999988754

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=3.9e-33  Score=272.62  Aligned_cols=315  Identities=14%  Similarity=0.198  Sum_probs=211.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      +|..+.+.+|++++|.|. .+.+  .+.+.|+|+. +..+                   ..+..       ....|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR   85 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence            456778999999999999 5543  5789999863 2111                   11111       135899999


Q ss_pred             CCCCCCeEEEEEEEecCCc--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCC
Q psy17058        147 ITKADEGVYICSIQNAQGN--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDN  221 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~  221 (471)
                      ++.+|+|.|+|.+.+..+.  .......|.|..  ..+|.+....+.. .+.+|+.++|.|.+....|.+ .++|++++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  164 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  164 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence            9999999999999987543  122334555542  2245554433322 347899999999995445766 999999987


Q ss_pred             CCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE------------------EeCCceee
Q psy17058        222 DGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV------------------LTLPAVTI  278 (471)
Q Consensus       222 ~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V------------------~~~p~~~~  278 (471)
                      .+......     ......+.|.|.++..+| |.|+|.+.|..+.......+.+                  ..+|.+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~  243 (444)
T 1igt_B          165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFI  243 (444)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEE
T ss_pred             CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEe
Confidence            63211100     112224568999999889 9999999999887655444432                  12444434


Q ss_pred             CCCccEE-ecCCCcEEEEEEEeecC---C-CeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEE
Q psy17058        279 TPSEYVS-VRPGEPLTLECEATGRP---M-PTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       279 ~~~~~~~-~~~g~~v~l~C~~~g~p---~-~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .++.... +.+|+++.|.|.+.|.+   + +.+.|++++..+......       ......+.|.|.+++.+|+|.|+|.
T Consensus       244 ~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~  323 (444)
T 1igt_B          244 FPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCK  323 (444)
T ss_dssp             ECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEE
T ss_pred             cCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEE
Confidence            3332222 58899999999999984   3 599999999876532110       0112356899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeC
Q psy17058        347 GKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKP  426 (471)
Q Consensus       347 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~  426 (471)
                      |.|..|.......+.+...                                           +..+|.+.+.+.......
T Consensus       324 a~n~~~~~~~~~~v~~~~~-------------------------------------------~~~~P~v~~~~~~~~~~~  360 (444)
T 1igt_B          324 VNNKDLPAPIERTISKPKG-------------------------------------------SVRAPQVYVLPPPEEEMT  360 (444)
T ss_dssp             EECTTCSSCEEEEEECCCC-------------------------------------------CCBCCEEEEECCCGGGTT
T ss_pred             EEcCCCCCceEEEEeccCC-------------------------------------------CCCCCEEEEeCCChHHcc
Confidence            9999987743333322111                                           013578776554432233


Q ss_pred             CCeEEEEEEecc-cCCc-eEEEecCCCCCCCc
Q psy17058        427 GDIANIRCSAIG-ATPI-SIRWQPLQGYFPSH  456 (471)
Q Consensus       427 g~~~~l~C~~~g-~p~~-~v~W~~~g~~l~~~  456 (471)
                      +..+.|.|.+.| .|++ .|+|+|||.++...
T Consensus       361 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  392 (444)
T 1igt_B          361 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNY  392 (444)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             CCeEEEEEEEEeeeCCCCEEEEEECCEEcccc
Confidence            445999999998 4555 99999999988543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=263.39  Aligned_cols=271  Identities=20%  Similarity=0.266  Sum_probs=200.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCC-CCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SND-PSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ..+|.+. .|.+..+.+|+++.|.|. .+. |.+.+.|+++ +..+.....     ....|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            5 FTGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             SSCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEET-TEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             cCCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEEC-CeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence            3567776 455689999999999999 555 7899999999 554443221     446999999999999999999999


Q ss_pred             cCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc---------cCCCCCCeEEEEeCCCCCCcCCCceEE
Q psy17058        162 AQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL---------EAGEPSPTQTWIRPDNDGKFGPDVEVY  232 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~---------~~~~p~~~v~W~~~~~~~~~~~~~~~~  232 (471)
                      ..+. ..  ..+.|.+...|.+...+ ....+.+|+.+.|.|.+         ..+.|.+.+.|++++..+....++.+.
T Consensus        83 ~~g~-~~--~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  158 (317)
T 2y25_A           83 DRGK-DK--SRLKLVDEAFKELMMEV-CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG  158 (317)
T ss_dssp             SSCE-EE--EEECCSTHHHHHHHHHH-HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEE
T ss_pred             CCCc-EE--EEEEEEEecCccccccC-CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEe
Confidence            8775 33  33444433333221111 11233455666666655         223788999999999887666665554


Q ss_pred             eee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe--------------------CCceeeCCCccEEecCCC
Q psy17058        233 QEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT--------------------LPAVTITPSEYVSVRPGE  290 (471)
Q Consensus       233 ~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~--------------------~p~~~~~~~~~~~~~~g~  290 (471)
                      ..+  ..|.|.+++.+|+|.|+|.+.|..+....++.|.+..                    .|.+.........+.+|+
T Consensus       159 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~  238 (317)
T 2y25_A          159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK  238 (317)
T ss_dssp             ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTS
T ss_pred             ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCC
Confidence            433  3499999999999999999999888887777776531                    244444444456889999


Q ss_pred             cEEEEEEEeecCCCeEEEEeCCccCCCccccccc---CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL---TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       291 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .+.|.|.+.|+|.+.+.|++++..+.........   .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       239 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             BBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            9999999999999999999999887643221111   33469999999999999999999999999999999998753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=1e-32  Score=253.66  Aligned_cols=267  Identities=16%  Similarity=0.221  Sum_probs=197.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc-ccCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-IAGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      ++|.+...+....+.+|++++|.|. .+    .+.|++++........ .....|.|.+++.+|+|.|+|.+.+..+. .
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~   77 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-G   77 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCc-c
Confidence            5677888888899999999999999 44    4999988432221111 15679999999999999999999887766 5


Q ss_pred             eeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe-CCCCCCcCCCceEEeeeceEEEeccCC
Q psy17058        168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR-PDNDGKFGPDVEVYQELGVLRFNNIAT  245 (471)
Q Consensus       168 ~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~  245 (471)
                      .....|.|.  .+|...........+.+|+.++|.|.+ .+.+.+ .+.|++ ++..+....++.+.. .+.|.|.+++.
T Consensus        78 ~~~~~l~V~--~~~~~~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~  153 (289)
T 3ejj_X           78 STTIHLYVK--DPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTVYFFSP-WRGFIIRKAKV  153 (289)
T ss_dssp             CEEEEEEEC--CSSCSEEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEECCTTCCEEEET-TTEEEESSCCG
T ss_pred             eeEEEEEEe--CCCcceecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCeecCCCccEEECC-CCCEEEeeccc
Confidence            555555555  444433333456678899999999999 455544 499986 444433344444433 67899999999


Q ss_pred             CCCeEEEEEEE-cCCCceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCcc
Q psy17058        246 GDEGKYTCIAE-NSAGKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNL  319 (471)
Q Consensus       246 ~d~G~Y~C~~~-~~~~~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~  319 (471)
                      +|+|.|+|.+. +..+..+..+.|.|.    .+|.+...+. ...+.+|+++.|.|.+.+ .|.+.+.|++++..+....
T Consensus       154 ~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~  232 (289)
T 3ejj_X          154 LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS-KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL  232 (289)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESS-SEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred             ccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCC-ceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence            99999999999 444455667788888    5676766654 456689999999999998 7889999999998875432


Q ss_pred             c----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        320 E----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       320 ~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .    .......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.+.+.+
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          233 NSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             EEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             CcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            1    1223346789999999999999999999999999999999988765

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=1.6e-32  Score=255.49  Aligned_cols=266  Identities=19%  Similarity=0.263  Sum_probs=199.4

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCC-----eEEEEeCCCCCC------------CC--Cc----------ccCcEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSA-----TIKWSKDNQEQL------------PP--NM----------IAGETLI  143 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~-----~v~W~~~~~~~~------------~~--~~----------~~~~~L~  143 (471)
                      +...|.++.+..|++++|.|. .+.+.+     .+.|+|++....            ..  +.          ..+.+|+
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            344577888999999999999 544433     489999843211            00  00          0235799


Q ss_pred             EcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC
Q psy17058        144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG  223 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~  223 (471)
                      |.+++.+|+|.|+|.+.+......  ...+.|.+...|....... ...+..|+.+.+.|.+..+.|.+.+.|++++..+
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~--~~~~~l~v~~~P~~~~~~~-~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~  159 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSR--SVDIWLRVLAKPQNTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM  159 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEE--EEEEEECCBBCCEEEEEEC-CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             ECcCChhhCEEEEEEEeeccCcce--eeeeeeeeccCCcceeccc-ceEeecCceEEEEEEccCccCCcEEEeecCCccc
Confidence            999999999999999865443323  3445555556666655443 2345678899999988678899999999998875


Q ss_pred             CcCCCceE-----EeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        224 KFGPDVEV-----YQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       224 ~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ........     ....+.|.|.....+|+|.|+|.+.|..+.  ....+.|.|.++|.+.+.+.....+.+|+.+.|.|
T Consensus       160 ~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          160 PNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEE
T ss_pred             cccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEE
Confidence            43221111     111345889999999999999999997655  45566777888888877666566788899999999


Q ss_pred             EEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        297 EATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       297 ~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .+.|+|.| .|.|++++..+.....    ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|
T Consensus       240 ~~~g~P~p~~v~W~~~~~~l~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          240 DARSNPEPTGYNWSTTMGPLPPFAV----AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             EEEEESCCCEEEEEETTBSCCTTEE----EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             EecCCCCCcEEEEEECCEECCCceE----EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            99999998 6999999988764422    234689999999999999999999999999999999999775

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=261.26  Aligned_cols=264  Identities=17%  Similarity=0.256  Sum_probs=196.9

Q ss_pred             CceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCC------------------CCc------ccCcEEEEcCCCCCCC
Q psy17058         99 RQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLP------------------PNM------IAGETLIINGITKADE  152 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~------------------~~~------~~~~~L~i~~v~~~D~  152 (471)
                      +.+++.+|++++|.|. . +.+.+.+.|+|+++....                  .+.      ....+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3678899999999998 3 445567999997432110                  000      0345799999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---  229 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---  229 (471)
                      |.|+|.+.+...........+.+.+...+.. ...........|+.+.|.|.+..+.|.+.++|++++..+......   
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSL-IKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEE-EECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeecccccc-ccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            9999999886544344455555553322222 222333345578999999987678999999999998875332110   


Q ss_pred             eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eE
Q psy17058        230 EVYQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TV  306 (471)
Q Consensus       230 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i  306 (471)
                      ......+.|.|..+...|.|.|+|.+.|..+.  .+.++.|.|..+|.+.+.+.....+..|+.+.|.|.+.|+|.| .+
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v  245 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS  245 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence            11112456999999999999999999997665  4556677788888877766656678889999999999999988 69


Q ss_pred             EEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       307 ~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .|+|++..+.....   ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       246 ~W~k~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          246 VWSRLDGQWPDGLL---ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             ECCBSSSCCCSSCB---CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             EEEECCeECCCcEE---EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            99999988764432   3345667789999999999999999999999999999999887

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=2e-33  Score=264.07  Aligned_cols=270  Identities=20%  Similarity=0.327  Sum_probs=140.2

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCC-CCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SND-PSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      |.+.. |....+.+|+++.|.|. .+. |.+.+.|+++ +..+.....   .++.|.|.+++.+|+|.|+|.+.|. +. 
T Consensus        10 p~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~-g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-   85 (334)
T 1ry7_B           10 PEPGQ-QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD-GTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-   85 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCC-cCcEEEecCCcEEEEeeCCCCCCCcceEEEEC-CeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-
Confidence            34433 77889999999999999 544 6789999999 555543222   5678999999999999999999987 54 


Q ss_pred             eeeeEEEEEeecc--------------------CCeeeec---CCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC
Q psy17058        167 FQDYASIQVDKRE--------------------MPRIRIH---PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG  223 (471)
Q Consensus       167 ~~~~~~l~v~~~~--------------------~p~~~~~---~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~  223 (471)
                      ......|.|....                    +|.+...   ......+.+|+.++|.|.+ .+.|.+.+.|++++..+
T Consensus        86 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~  164 (334)
T 1ry7_B           86 VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREF  164 (334)
T ss_dssp             ---------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC-CCSSCCEEECCBTTBCC
T ss_pred             EEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc-cCCCCCeEEEEECCEEC
Confidence            4445555554221                    1222111   0122467899999999999 77888999999998876


Q ss_pred             CcCCCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeC----CceeeCCCccEEecCCCcEEEEE
Q psy17058        224 KFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       224 ~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~----p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ....+.   ........|.|.+++.+|+|.|+|.+.|..+.....+.|.|...    |.+.........+.+|+.+.|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C  244 (334)
T 1ry7_B          165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC  244 (334)
T ss_dssp             CTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECC
T ss_pred             cccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEE
Confidence            544332   22223558999999999999999999999888888888998863    33333333456889999999999


Q ss_pred             EEeecCCCeEEEEe----CCccCCCccc----cc-------ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        297 EATGRPMPTVSWVK----YIAPFDRNLE----RD-------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       297 ~~~g~p~~~i~W~~----~~~~~~~~~~----~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .+.|+|.+.+.|++    ++..+.....    ..       .......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       245 ~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  324 (334)
T 1ry7_B          245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV  324 (334)
T ss_dssp             CCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEE
T ss_pred             EEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEE
Confidence            99999999999999    6665542211    00       011234899999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |...|
T Consensus       325 V~~~~  329 (334)
T 1ry7_B          325 VLPAE  329 (334)
T ss_dssp             EECSC
T ss_pred             EEECC
Confidence            98864

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=3.6e-32  Score=258.54  Aligned_cols=281  Identities=16%  Similarity=0.190  Sum_probs=208.7

Q ss_pred             ceEEEEecCcEEEEEEee-eCCccEEEeccchh----------------------------------hh---------he
Q psy17058         45 HEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSF----------------------------------LS---------LI   80 (471)
Q Consensus        45 ~~~~v~~g~~~~l~C~~~-~~~~~~~w~~~~~~----------------------------------~~---------~~   80 (471)
                      +.+.+.+|+.++|.|.+. .+...+.|++....                                  +.         ..
T Consensus         2 e~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             CeEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            458899999999999987 56678999976421                                  00         13


Q ss_pred             eeeeeeecCCCCc-----EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeE
Q psy17058         81 IICLAYLSPQANE-----VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV  154 (471)
Q Consensus        81 ~~c~~~~~~~~~~-----v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~  154 (471)
                      |.|.+........     +.+.| ...+.+|++++|.|. .+.|.+.+.|+++++..    ......|.|.+++.+|+|.
T Consensus        82 Y~C~~~n~~~~~~l~V~~~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~L~i~~v~~~d~G~  156 (363)
T 1wio_A           82 YICEVEDQKEEVQLLVFGLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN----IQGGKTLSVSQLELQDSGT  156 (363)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE----EEESSEEEECSBCGGGCEE
T ss_pred             EEEEEEECCCcEEEEEEeCCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc----cccceEEEEeeCChhcCCE
Confidence            6787653322222     22334 457899999999999 67899999999994432    2256799999999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCC-----CCCCeEEEEeCCCCCCc----
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG-----EPSPTQTWIRPDNDGKF----  225 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~-----~p~~~v~W~~~~~~~~~----  225 (471)
                      |+|.+.+..+. ....  +.|.+..+|...    ....+.+|+.++|.|.+ .+     .|.+.++|++++..+..    
T Consensus       157 Y~C~a~~~~~~-~~~~--~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~~~~~~~~  228 (363)
T 1wio_A          157 WTCTVLQNQKK-VEFK--IDIVVLAFQKAS----SIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERASSSKSWIT  228 (363)
T ss_dssp             CEEEEEETTEE-EEEC--CEECEECCSCSE----EEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCCCCCCEEE
T ss_pred             EEEEEecCCCe-EEEE--EEEEEecCCCCC----CceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCCccceEEE
Confidence            99999986543 3333  334333344322    34467789999999988 44     67789999999987654    


Q ss_pred             ----CCCceEEe----------e--eceEEEeccCCCCCeEEEEEEEcC--CCceEEEEEEEEEeCCceeeCCCccEEec
Q psy17058        226 ----GPDVEVYQ----------E--LGVLRFNNIATGDEGKYTCIAENS--AGKEVMNAYIHVLTLPAVTITPSEYVSVR  287 (471)
Q Consensus       226 ----~~~~~~~~----------~--~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~l~V~~~p~~~~~~~~~~~~~  287 (471)
                          ...+.+..          .  ...|.|.++..+|+|.|+|.+.|.  .|..+..+.|.|...              
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v--------------  294 (363)
T 1wio_A          229 FDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA--------------  294 (363)
T ss_dssp             EEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE--------------
T ss_pred             EEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe--------------
Confidence                33333321          1  238999999999999999999999  888888888888621              


Q ss_pred             CCCcEEEEEEEeecCCCe--EEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        288 PGEPLTLECEATGRPMPT--VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      .|+.+.|.|.+.|.|.|.  +.|++++..+..         ...|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus       295 ~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~---------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV---------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE---------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             cCCCeeEEEEEccccCCCccEEEEeCCCceee---------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence            188999999999998887  999999987642         345678999999999999999964 45555556655

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.6e-31  Score=245.16  Aligned_cols=243  Identities=22%  Similarity=0.385  Sum_probs=200.0

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE--eeeceEEEeccCCCCCeEEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY--QELGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.++|++++..+....++.+.  .....|.|.+++.+|+|.|+|.+.
T Consensus         4 ~pP~~~~~p-~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            4 APPFFDLKP-VSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCEEEECC-CCEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEccc-cceEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            456665555 45678899999999999 67788999999999876655554443  234679999999999999999999


Q ss_pred             cCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEee
Q psy17058        257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIAS  334 (471)
Q Consensus       257 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~  334 (471)
                      |..+..+..+.|.|..+|.+...+.....+.+|+.+.|.|.+.|.|.+.+.|++++..+....  ..........|.|.+
T Consensus        82 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (284)
T 2rik_A           82 NVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN  161 (284)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECS
T ss_pred             ECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECC
Confidence            998888889999999999887766555678999999999999999999999999998876432  222234567899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCe
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR  414 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~  414 (471)
                      ++.+|+|.|+|.|.|..|..+..+.|.|..+                                               |.
T Consensus       162 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-----------------------------------------------p~  194 (284)
T 2rik_A          162 LSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-----------------------------------------------PV  194 (284)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEECC-----------------------------------------------CB
T ss_pred             CCcccCEEEEEEEEcCCCceeEEEEEEEecC-----------------------------------------------Cc
Confidence            9999999999999999999999999999875                                               56


Q ss_pred             eEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ec--CeEEECCCC
Q psy17058        415 ITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YN--GELRLGPHK  470 (471)
Q Consensus       415 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~--~~l~i~~~~  470 (471)
                      +...+....+.+|+.+.|.|.+.|.|++.++|+|||..|..+.++    .+  .+|.|.+++
T Consensus       195 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  256 (284)
T 2rik_A          195 FRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD  256 (284)
T ss_dssp             CCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCC
T ss_pred             ceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCC
Confidence            665666678889999999999999999999999999998765432    22  478888765

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=2.6e-31  Score=261.83  Aligned_cols=315  Identities=15%  Similarity=0.257  Sum_probs=208.1

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLI  143 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~  143 (471)
                      ....|..+.+.+|++++|.|. .+.+  ...+.|||+. +...                   ..+..       ....|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            344577889999999999999 5443  5789999963 1111                   11111       124899


Q ss_pred             EcCCCCCCCeEEEEEEEecCCc-----eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-C-eE
Q psy17058        144 INGITKADEGVYICSIQNAQGN-----VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-P-TQ  214 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~-----~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~-~v  214 (471)
                      |.+++.+|+|.|+|.+.+..+.     .......|.|..  ..+|.+...+..  .+.+|+.++|.|.+....|. + .+
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v  161 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSV  161 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEE
Confidence            9999999999999999987642     122344566652  234555443322  23689999999999444465 4 99


Q ss_pred             EEEeCCCCCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEE---------------
Q psy17058        215 TWIRPDNDGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVL---------------  271 (471)
Q Consensus       215 ~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~---------------  271 (471)
                      +|++++.........       ......+.|.|..+...|+|.|+|.+.|..+. ....+.|.|.               
T Consensus       162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~  241 (475)
T 1iga_A          162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS  241 (475)
T ss_pred             EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence            999987532111100       01111345888888889999999999998763 2333333331               


Q ss_pred             ---eCCceeeCCCccEEecCCCcEEEEEEEeecCC---CeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCC
Q psy17058        272 ---TLPAVTITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRES  338 (471)
Q Consensus       272 ---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~---~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~  338 (471)
                         ..|.+.+.++....+.+|+++.|.|.+.|.++   +.+.| + +..+.....       .......+.|.|.++..+
T Consensus       242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~  319 (475)
T 1iga_A          242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN  319 (475)
T ss_pred             CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhc
Confidence               13444333332223588999999999998754   58999 4 333321100       001124567999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEc
Q psy17058        339 DAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR  418 (471)
Q Consensus       339 d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~  418 (471)
                      |+|.|+|.|.|..|.......|.+...                                            ..+|.+.+.
T Consensus       320 d~G~Y~C~a~n~~~~~~~~~~v~~~~~--------------------------------------------~~~P~v~~~  355 (475)
T 1iga_A          320 HGKTFTCTAAYPESKTPLTATLSKSGN--------------------------------------------TFRPEVHLL  355 (475)
T ss_pred             cCCcEEEEEEcCCCCCceEEEeecCCC--------------------------------------------CCCCeEEEE
Confidence            999999999999998655555543221                                            125777665


Q ss_pred             CCe-eeeeCCCeEEEEEEecccCC--ceEEEecCCCCCCCc
Q psy17058        419 PVR-QTVKPGDIANIRCSAIGATP--ISIRWQPLQGYFPSH  456 (471)
Q Consensus       419 ~~~-~~~~~g~~~~l~C~~~g~p~--~~v~W~~~g~~l~~~  456 (471)
                      +.. ..+.+|+.+.|.|.+.|.++  +.|+|+|||++|..+
T Consensus       356 ~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          356 PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             CCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            544 34778999999999999644  499999999998655

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=251.70  Aligned_cols=260  Identities=14%  Similarity=0.216  Sum_probs=191.7

Q ss_pred             CceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         99 RQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      ..+.+.+|+.+.|.|.  .+.|.+.+.|+|+ +..+.....       ....|.|.+++.+|+|.|+|.+.|..+. .. 
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~-~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~-~~-   85 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKD-YVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGI-AS-   85 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEET-TEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCC-CE-
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEEC-CEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCc-EE-
Confidence            3567899999999988  5678899999999 555543222       2368999999999999999999998775 22 


Q ss_pred             eEEEEEeecc----------CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee----e
Q psy17058        170 YASIQVDKRE----------MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE----L  235 (471)
Q Consensus       170 ~~~l~v~~~~----------~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~  235 (471)
                      ...+.|....          +|.+...+.....+.+|+.++|.|.+..+.|.+.+.|++++..+....++.+...    .
T Consensus        86 s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~  165 (312)
T 2y23_A           86 SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI  165 (312)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTE
T ss_pred             EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCE
Confidence            3444443100          4554444333567889999999999944889999999999988666665555432    1


Q ss_pred             ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE-------------------EeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV-------------------LTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       236 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V-------------------~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ..|.|.+++.+|+|.|+|.+.+..........+..                   ..+|.+... . ...+.+|+.+.|.|
T Consensus       166 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~v~~G~~~~l~C  243 (312)
T 2y23_A          166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-L-SWEVTGECNVLLKC  243 (312)
T ss_dssp             EEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-E-EEEEETTTEEEEEE
T ss_pred             EEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeec-c-eEEEeCCCEEEEEE
Confidence            24999999999999999999865444433333210                   112333321 1 25788999999999


Q ss_pred             EEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        297 EATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       297 ~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .+.|.|.+ .+.|++++..+..............|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       244 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          244 KVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            99999988 99999999887633222223445799999999999999999999999999999988764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=2.3e-32  Score=268.15  Aligned_cols=315  Identities=15%  Similarity=0.234  Sum_probs=202.3

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      +|..+.+.+|++++|.|. .+.+  .+.+.|+|+. +...                   ..+..       ....|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            456788999999999999 5554  6789999852 1110                   11111       124899999


Q ss_pred             CCCCCCeEEEEEEEecCC---------c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-C
Q psy17058        147 ITKADEGVYICSIQNAQG---------N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-P  212 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~  212 (471)
                      ++.+|+|.|+|.+.+..+         .  .......+.|..  ..+|.+...+... .+.+|+.++|.|.+....|. +
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~  164 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPV  164 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCS-CCCTTCCEEEEEEEESBBSCCC
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccc-cccCCCcEEEEEEEeEEeCCCe
Confidence            999999999999998754         0  122345566653  1245555443322 45789999999999544465 7


Q ss_pred             eEEEEeCCCCCCcCCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE---------------
Q psy17058        213 TQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL---------------  271 (471)
Q Consensus       213 ~v~W~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~---------------  271 (471)
                      .++|++++..+........      ....+.|.|.++..+| |.|+|.+.|..+.......+.+.               
T Consensus       165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  243 (457)
T 1hzh_H          165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPE  243 (457)
T ss_dssp             EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCC
T ss_pred             EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCcc
Confidence            9999999865321110001      1113469999999989 99999999977665544444432               


Q ss_pred             --eCCceeeCCCccE-EecCCCcEEEEEEEeecCCC----eEEEEeCCccCCCccc-ccccCceeEEEEe------ecCC
Q psy17058        272 --TLPAVTITPSEYV-SVRPGEPLTLECEATGRPMP----TVSWVKYIAPFDRNLE-RDELTSRAVYTIA------SVRE  337 (471)
Q Consensus       272 --~~p~~~~~~~~~~-~~~~g~~v~l~C~~~g~p~~----~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~------~~~~  337 (471)
                        .+|.+.+.++... .+.+|+.+.|.|.+.|.|++    .+.|++++..+..... .......+.|.+.      ....
T Consensus       244 ~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~  323 (457)
T 1hzh_H          244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW  323 (457)
T ss_dssp             CSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHH
T ss_pred             ccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHc
Confidence              1344433332222 25789999999999997553    9999999987643211 0111122233333      3333


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEE
Q psy17058        338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITL  417 (471)
Q Consensus       338 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~  417 (471)
                      +|+|.|+|.|.|..+.......+.+...                                           +..+|.+.+
T Consensus       324 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~-------------------------------------------~~~~P~v~~  360 (457)
T 1hzh_H          324 LNGKEYKCKVSNKALPAPIEKTISKAKG-------------------------------------------QPREPQVYT  360 (457)
T ss_dssp             HHTCCEEEEEECTTSSSCEEEEECCCCC-------------------------------------------CCBCCEEEE
T ss_pred             cCCCcEEEEEeCCCCCCcceEEEEcccC-------------------------------------------CCCCCeEEE
Confidence            3499999999988766544433432111                                           013577776


Q ss_pred             cCCe-eeeeCCCeEEEEEEecccCCc--eEEEecCCCCCCCce
Q psy17058        418 RPVR-QTVKPGDIANIRCSAIGATPI--SIRWQPLQGYFPSHV  457 (471)
Q Consensus       418 ~~~~-~~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~l~~~~  457 (471)
                      .+.. ..+..|+ +.|.|.+.|.|++  .|+|+|||.+|....
T Consensus       361 ~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  402 (457)
T 1hzh_H          361 LPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK  402 (457)
T ss_dssp             ECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             ECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECccee
Confidence            6544 3455555 9999999997554  999999999986543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=100.00  E-value=3e-32  Score=253.87  Aligned_cols=263  Identities=19%  Similarity=0.267  Sum_probs=193.7

Q ss_pred             CceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCC-CC----CCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         99 RQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQ-LP----PNMI-AGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~-~~----~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      ..+.+.+|+++.|.|. .+.+ .+.+.|+|++... +.    .+.. .++.|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~   91 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIK   91 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCC-CCEE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceE-EEEE
Confidence            3567999999999999 5655 7899999994321 11    1111 5568999999999999999999988766 4333


Q ss_pred             EEEEEeeccCCeeeecC--CCceeEEcCCeEEEEEEcc-----CCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEecc
Q psy17058        171 ASIQVDKREMPRIRIHP--NASQTFIVGDRADIQCVLE-----AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNI  243 (471)
Q Consensus       171 ~~l~v~~~~~p~~~~~~--~~~~~v~~g~~~~L~C~~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~  243 (471)
                      ..+.+.. .+|.+...+  .....+.+|+.++|.|.+.     .+.|.+.++|++++..+.... .......+.|.|.++
T Consensus        92 ~~v~v~~-~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~-~~~~~~~~~L~i~~v  169 (315)
T 1itb_B           92 ISAKFVE-NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN-IHFSGVKDRLIVMNV  169 (315)
T ss_dssp             CCCEEEC-CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS-SSEEEETTEEEESSC
T ss_pred             EEEEEeC-CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc-ceEeecCceEEEEec
Confidence            3344332 233322221  1124577899999999873     678889999999998765433 233444778999999


Q ss_pred             CCCCCeEEEEEEE-cCCCce---EEEEEEEEE-----eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc
Q psy17058        244 ATGDEGKYTCIAE-NSAGKE---VMNAYIHVL-----TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP  314 (471)
Q Consensus       244 ~~~d~G~Y~C~~~-~~~~~~---~~~~~l~V~-----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~  314 (471)
                      +.+|+|.|+|.+. |..+..   ...+.+.+.     .+|.+...+.....+.+|+.+.|.|.+.|.|.|.+.|+++|..
T Consensus       170 ~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~  249 (315)
T 1itb_B          170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV  249 (315)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEE
T ss_pred             eehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEE
Confidence            9999999999999 677765   334445444     4555544443335789999999999999999999999999988


Q ss_pred             CCCccccc--------------ccCceeEEEEeecCCCC-CeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        315 FDRNLERD--------------ELTSRAVYTIASVRESD-AGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       315 ~~~~~~~~--------------~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      +.......              .....+.|.|.+++.+| +|.|+|.|.|..|....++.|.|..
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            76432100              01234589999999999 9999999999999999999998854

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=2.3e-31  Score=249.45  Aligned_cols=258  Identities=19%  Similarity=0.246  Sum_probs=190.2

Q ss_pred             CceeecCCCcEEEEee-CC---------CCCCeEEEEeCCCCCCCC--CcccCcEEEEcCCCCCCCe-EEEEEEEecCCc
Q psy17058         99 RQQSAPEGSQVTIECK-SN---------DPSATIKWSKDNQEQLPP--NMIAGETLIINGITKADEG-VYICSIQNAQGN  165 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~---------~p~~~v~W~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~~~~  165 (471)
                      ..+.+.+|+++.|.|. .+         .|.+.+.|+|+ +..+..  +....+.|.|.+++.+|+| .|+|.+.|..|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKI-GKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEEC-SSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEEC-CCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            5667999999999999 43         36689999999 444322  1235789999999999999 999999998876


Q ss_pred             eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCCCceEEeeeceEEEeccC
Q psy17058        166 VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA  244 (471)
Q Consensus       166 ~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~  244 (471)
                       ........+ +..+|.+... .....+.+|+.+.|.|.+ .+.| .+.+.|+|++..+..... .....++.|.|.+++
T Consensus       116 -~~~~~~~~v-~~~~p~~~~~-~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~~~~~-~~~~~~~~L~I~~v~  190 (329)
T 3oq3_B          116 -CVQGIVRSH-IRKPPSCIPE-TYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLIIHNPE  190 (329)
T ss_dssp             -EEEEEEEEE-ECCCCSCEEE-EEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECCCSSS-SEEEETTEEEECSCC
T ss_pred             -eeeEEEEEE-EcCCCcEecc-ccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCCCCCc-eEecCCCEEEEeecC
Confidence             222222222 2233432222 222235679999999998 7788 899999999987643332 223336889999999


Q ss_pred             CCCCeEEEEEEEcC--CCce----EEEEEEEEEeCCc---eeeCCCccEEecCCCcEEEEEEEeecC---CC-eEEEEeC
Q psy17058        245 TGDEGKYTCIAENS--AGKE----VMNAYIHVLTLPA---VTITPSEYVSVRPGEPLTLECEATGRP---MP-TVSWVKY  311 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~--~~~~----~~~~~l~V~~~p~---~~~~~~~~~~~~~g~~v~l~C~~~g~p---~~-~i~W~~~  311 (471)
                      .+|+|.|+|.+.|.  .+..    +..+.|.|..+|.   ..+. .....+.+|+.+.|.|.+.|.|   .+ .+.|+++
T Consensus       191 ~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~-~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~  269 (329)
T 3oq3_B          191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL-DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP  269 (329)
T ss_dssp             GGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEEC-CSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECT
T ss_pred             hhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceec-CCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEEC
Confidence            99999999999986  5443    3347788877662   2223 3457889999999999999988   77 8999999


Q ss_pred             CccCC-Ccccc------cccCceeEEEEeecCCCCCe-EEEEEEEcCCCceEEEEEEEEe
Q psy17058        312 IAPFD-RNLER------DELTSRAVYTIASVRESDAG-QYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       312 ~~~~~-~~~~~------~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +..+. .....      ........|.|.+++.+|+| .|+|.|.|..|..+.++.|.|.
T Consensus       270 g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             TSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence            88742 22110      01125678999999999999 9999999999999999888773

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=240.44  Aligned_cols=247  Identities=17%  Similarity=0.251  Sum_probs=192.2

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      .|.|.+.|....+.+|+.+.|.|. .+.|.+ .+.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.+..+.   
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~-g~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~s---   73 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN-GTATQT---STPSYRITSASVNDSGEYRCQRGLSGRS---   73 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEET-TEECSC---CSSEEEESSCCGGGCEEEEEEESSSCCC---
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEEC-CEEeec---cCCeEEEecCCcccCeEEEEEEecCCcc---
Confidence            478899999999999999999999 777776 9999998 655543   3678999999999999999999876543   


Q ss_pred             eeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCC
Q psy17058        169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE  248 (471)
Q Consensus       169 ~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  248 (471)
                      ....+.|.  .++.. ..+. ...+.+|+.+.|.|.+..+.|.+.+.|++++..+.      .......|.|.+++.+|.
T Consensus        74 ~~~~l~v~--~~~~~-~~~~-~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~------~~~~~~~l~i~~~~~~d~  143 (262)
T 3rjd_A           74 DPIQLEIH--RGWLL-LQVS-SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHN  143 (262)
T ss_dssp             CCEEEEEE--CSSEE-EEES-CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE------EEEECCCEEESSCCGGGC
T ss_pred             ccEEEEEe--ccceE-ecCC-CeEEecCCeEEEEEEccCCCCCceEEEEECCcccc------ccCCCCeEEEEECChhhC
Confidence            23445544  44433 3332 34678999999999996778889999999887632      223356899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCC-C----eEEEEeCCccCCCccc
Q psy17058        249 GKYTCIAENSAGKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPM-P----TVSWVKYIAPFDRNLE  320 (471)
Q Consensus       249 G~Y~C~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~----~i~W~~~~~~~~~~~~  320 (471)
                      |.|+|.+.|..+..+..+.|.|..   +|.+...+  ...+.+|+.+.|.|.+.+.|. +    .+.|++++..+..   
T Consensus       144 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~--~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~---  218 (262)
T 3rjd_A          144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV--TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG---  218 (262)
T ss_dssp             EEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS--CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE---
T ss_pred             EEEEEEEeCCCCccccceEEEeccCCCCCeEeecC--ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc---
Confidence            999999999987777788888885   34444444  345788999999999999875 4    3789999877642   


Q ss_pred             ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE---EEEEEEE
Q psy17058        321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE---KVITVAV  362 (471)
Q Consensus       321 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V  362 (471)
                         ......|.|.+++.+|+|.|+|.|.|..|...   ..+.|.|
T Consensus       219 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          219 ---RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV  260 (262)
T ss_dssp             ---EESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred             ---cCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEE
Confidence               23456899999999999999999999999752   2345544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=2.5e-33  Score=273.17  Aligned_cols=314  Identities=15%  Similarity=0.208  Sum_probs=209.2

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      .|..+.+.+|++++|.|. .+.  +.+.+.|+|++ +..+                   ..+..       ....|.|.+
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (434)
T 1igy_B            5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS   84 (434)
T ss_dssp             CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred             CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence            355678999999999999 554  36789999973 1110                   11111       134799999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCC
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDG  223 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~  223 (471)
                      ++.+|+|.|+|.+.+..+. ......|.|..  ..+|.+....+.. .+.+|+.++|.|.+....|.+ .++|++++..+
T Consensus        85 v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~  162 (434)
T 1igy_B           85 LTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  162 (434)
T ss_dssp             BCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCS
T ss_pred             CChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCC
Confidence            9999999999999885433 33445666652  2345554433322 357899999999995444765 99999998753


Q ss_pred             CcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe----------C--CceeeCCCccEE-
Q psy17058        224 KFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT----------L--PAVTITPSEYVS-  285 (471)
Q Consensus       224 ~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~----------~--p~~~~~~~~~~~-  285 (471)
                      ......     ..+...+.|.|.++..+| |.|+|.+.|..+.......+.+..          .  |.+.+.++.... 
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~  241 (434)
T 1igy_B          163 GVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT  241 (434)
T ss_dssp             SEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHH
T ss_pred             CeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHh
Confidence            211000     111224568999999888 999999999888754444443321          0  444444332222 


Q ss_pred             ecCCCcEEEEEEEeecC----CCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        286 VRPGEPLTLECEATGRP----MPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~p----~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      +.+|+.+.|.|.+.|.+    .+.+.|++++..+.....       .......+.|.|..+..+|+|.|+|.|.|..|..
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            78999999999999874    358999999877642211       0111234679999999999999999999998865


Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEE
Q psy17058        355 EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRC  434 (471)
Q Consensus       355 ~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C  434 (471)
                      .....+.+...                                           +..+|.+...+.......|+.+.|.|
T Consensus       322 ~~~~~v~~~~~-------------------------------------------~~~~P~v~~~~~~~~~~~~~~~~L~C  358 (434)
T 1igy_B          322 PIEKTISKTKG-------------------------------------------KPRAPQVYTIPPPKEQMAKDKVSLTC  358 (434)
T ss_dssp             CCCCCCCCCCS-------------------------------------------CCBCCCCEEECCCSSSSSSSEEEEEE
T ss_pred             ceeEEEeccCC-------------------------------------------CCcCCEEEEECCCHHHhcCCcEEEEE
Confidence            33222222100                                           01257776665544445678899999


Q ss_pred             Eeccc-CC-ceEEEecCCCCCCCc
Q psy17058        435 SAIGA-TP-ISIRWQPLQGYFPSH  456 (471)
Q Consensus       435 ~~~g~-p~-~~v~W~~~g~~l~~~  456 (471)
                      .+.|. |+ +.|+|+|||++|...
T Consensus       359 ~~~g~~P~~~~v~W~k~g~~l~~~  382 (434)
T 1igy_B          359 MITDFFPEDITVEWQSDGQAPENY  382 (434)
T ss_dssp             EEEEEBCSCEEEEEEETTSCCSCC
T ss_pred             EEEeeECCCeEEEEEECCEecCCc
Confidence            99985 43 499999999998654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.98  E-value=8.7e-32  Score=247.88  Aligned_cols=268  Identities=15%  Similarity=0.181  Sum_probs=193.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      .+|.|...+....+.+|++++|.|. .+.    +.|++++......... ..+.|.|.+++.+|+|.|+|.+.|..+. .
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~   77 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG-G   77 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC-----C
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC-c
Confidence            5788999999999999999999999 442    9999873322111111 3469999999999999999999987765 4


Q ss_pred             eeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCC-CCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD-NDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       168 ~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                      .....|.|  ..+|...........+.+|+.++|.|.+....+.+.+.|++++ ..+.....+.... ...|.|.+++.+
T Consensus        78 ~~~~~l~V--~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~  154 (292)
T 4dkd_C           78 SAAIHLYV--KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP-WHGFTIHRAKFI  154 (292)
T ss_dssp             CEEECCEE--CCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCS-SSCCEETTCCGG
T ss_pred             ceEEEEEE--cCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccC-CceEEECCCCHH
Confidence            44444444  4555543444456678899999999999432222789999984 4433333333333 456999999999


Q ss_pred             CCeEEEEEEEcCCCce-EEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeecCC-CeEEEEeCCccCCCccc
Q psy17058        247 DEGKYTCIAENSAGKE-VMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFDRNLE  320 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~~-~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~  320 (471)
                      |+|.|+|.+.|..+.. +..+.|.|..    +|.+...+. ...+.+|+.+.|.|.+.+.|. +.+.|++++..+.....
T Consensus       155 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~  233 (292)
T 4dkd_C          155 QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA-ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ  233 (292)
T ss_dssp             GCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS-CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE
T ss_pred             HCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC-ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc
Confidence            9999999999876654 4478888886    777766654 345679999999999998765 47899998876642211


Q ss_pred             ----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        321 ----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       321 ----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                          .......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|....
T Consensus       234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          234 SDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             ceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence                1112244689999999999999999999999999999999998764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.98  E-value=4.4e-31  Score=247.75  Aligned_cols=266  Identities=19%  Similarity=0.289  Sum_probs=196.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC----CCCeEEEEeCCCC------------------CCCCCcc------cCcEEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND----PSATIKWSKDNQE------------------QLPPNMI------AGETLI  143 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~----p~~~v~W~~~~~~------------------~~~~~~~------~~~~L~  143 (471)
                      .+...|..+.+.+|++++|.|. .+.    +.+.+.|++++..                  ....+..      ...+|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            3344466789999999999999 544    4457999996311                  0111111      356899


Q ss_pred             EcCCCCCCCeEEEEEEE-ecCCceeeeeEEEEEeeccCCeeeec-CCCceeEEcC---CeEEEEEEccCCCCCCeEEEEe
Q psy17058        144 INGITKADEGVYICSIQ-NAQGNVFQDYASIQVDKREMPRIRIH-PNASQTFIVG---DRADIQCVLEAGEPSPTQTWIR  218 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~-~~~~~~~~~~~~l~v~~~~~p~~~~~-~~~~~~v~~g---~~~~L~C~~~~~~p~~~v~W~~  218 (471)
                      |.+++.+|+|.|+|.+. +..+. ......|.|.  .+|.+... ......+.+|   +.++|.|.+..+.|.+.+.|++
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~--~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGN-RESQLNLTVM--AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEE--BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             EcccCcccCcEEEEEEEecCCCc-cEEEEEEEEe--cCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            99999999999999854 43443 4445555554  55655332 3344567788   7899999843788999999999


Q ss_pred             CCCCCCcC-----CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEE
Q psy17058        219 PDNDGKFG-----PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLT  293 (471)
Q Consensus       219 ~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~  293 (471)
                      ++......     .... ......|.|..+..+|+|.|+|.+.|..+..+..+.|.|..+|.+.+.+.....+.+|+.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~  251 (331)
T 3u83_A          173 RLKGEAEYQEIRNPNGT-VTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK  251 (331)
T ss_dssp             SSCCEEEEEEEECTTSC-EEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEE
T ss_pred             CCCCccccceeECCCCc-EEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEE
Confidence            75432211     0111 11135688888999999999999999988888889999998888876665555788999999


Q ss_pred             EEEEEeecCCCe-EEEEeCCccCCCcccccccCceeEEEEe-ecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        294 LECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIA-SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       294 l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      |.|.+.|+|.+. +.|++++..+.....    ....+|.|. ++..+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus       252 l~C~~~g~p~p~~i~W~~~~~~~~~~~~----~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          252 LTCKADANPPATEYHWTTLNGSLPKGVE----AQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             EEEEEEEESCCCEEEEEETTBSCCTTEE----EETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             EEEeCcCCCCCCEEEEEECCCcccccce----ecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            999999999997 999999988754422    244689999 899999999999999999999999999998865

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=3.9e-32  Score=255.86  Aligned_cols=273  Identities=17%  Similarity=0.287  Sum_probs=201.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-C-------CCCCCeEEEEeCCCCC-CCCC----c-ccCcEEEEcCCCCCCCeE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-S-------NDPSATIKWSKDNQEQ-LPPN----M-IAGETLIINGITKADEGV  154 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~-------~~p~~~v~W~~~~~~~-~~~~----~-~~~~~L~i~~v~~~D~G~  154 (471)
                      ...|.+...|..+.+.+|+++.|.|. .       +.|.+.+.|++++... +...    . ..++.|.|.+++.+|+|.
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            45678888999999999999999999 5       8889999999994432 3322    1 156799999999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc----cCCCCCCeEEEEeCCCCCCcC-CCc
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL----EAGEPSPTQTWIRPDNDGKFG-PDV  229 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~----~~~~p~~~v~W~~~~~~~~~~-~~~  229 (471)
                      |+|.+.|..+. ......|.|.....+..... .....+.+|+.++|.|.+    ..+.|.+.+.|++++..+... .++
T Consensus        96 Y~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           96 YVCTTRNASYC-DKMSIELRVFENTDAFLPFI-SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EECCEEETTEE-EEEEEEEEEECSCGGGHHHH-CEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEECCcce-EEEEEEEEEEcCCCcccccc-ccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            99999998765 55556666653222111111 122367899999999993    267888999999999876554 334


Q ss_pred             eEEeeeceEEEeccCCCCCeEEEEEEEcCCC----ceEEEEEEEEEeC-----CceeeCCCccEEecCCCcEEEEEEE--
Q psy17058        230 EVYQELGVLRFNNIATGDEGKYTCIAENSAG----KEVMNAYIHVLTL-----PAVTITPSEYVSVRPGEPLTLECEA--  298 (471)
Q Consensus       230 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~V~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~--  298 (471)
                      ......+.|.|.+++.+|+|.|+|.+.|..+    ..+..+.|.|...     |.+. .+.....+.+|+.+.|.|.+  
T Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~-~~~~~~~v~~G~~v~L~C~~~~  252 (339)
T 3o4o_C          174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFL  252 (339)
T ss_dssp             EECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEEC-CCSCCCCCCCCSCCCCCCCEEE
T ss_pred             EEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEe-cCCceeEeccCCCEEEEEEEEC
Confidence            3333345899999999999999999999876    3566778888753     3333 33445578899999999999  


Q ss_pred             -eecC-CCeEEEEeCCccCCCccc--------ccccCc------eeEEEEeecCCCCC-eEEEEEEEcCCCceEEEEEEE
Q psy17058        299 -TGRP-MPTVSWVKYIAPFDRNLE--------RDELTS------RAVYTIASVRESDA-GQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       299 -~g~p-~~~i~W~~~~~~~~~~~~--------~~~~~~------~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                       .|.| .+.+.|++++..+.....        ......      ...|.|.+++.+|+ |.|+|.|.|..|..+..+.+.
T Consensus       253 ~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             SSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred             CCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence             8888 779999999987642110        000111      22799999999997 999999999999998877766


Q ss_pred             Eec
Q psy17058        362 VEH  364 (471)
Q Consensus       362 V~~  364 (471)
                      ++.
T Consensus       333 ~~~  335 (339)
T 3o4o_C          333 EHH  335 (339)
T ss_dssp             C--
T ss_pred             Hhc
Confidence            553

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=3.8e-31  Score=250.14  Aligned_cols=263  Identities=20%  Similarity=0.241  Sum_probs=164.5

Q ss_pred             CCceeecCCCcEEEEee-CCCCC-----------CeEEEEeCCCC-----CCC---CCc---ccCcEEEEcCCCCCCCeE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPS-----------ATIKWSKDNQE-----QLP---PNM---IAGETLIINGITKADEGV  154 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~-----------~~v~W~~~~~~-----~~~---~~~---~~~~~L~i~~v~~~D~G~  154 (471)
                      ...+.+.+|+++.|.|. .+.|.           +.+.|++++..     .+.   ...   ..++.|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            35678999999999999 65553           89999999421     111   011   156789999999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeee---cCCCceeEEcCCeEEEEEEcc----CCCCCCeEEEEeCCCCCCcCC
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRI---HPNASQTFIVGDRADIQCVLE----AGEPSPTQTWIRPDNDGKFGP  227 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~---~~~~~~~v~~g~~~~L~C~~~----~~~p~~~v~W~~~~~~~~~~~  227 (471)
                      |+|.+.|..+. ......|.|..  ++....   ..+....+.+|+.+.|.|.+.    .+.|.+.+.|+|++..+..  
T Consensus        94 Y~C~a~n~~~~-~~~~~~l~V~~--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~--  168 (349)
T 4dep_C           94 YTCMLRNTTYC-SKVAFPLEVVQ--KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN--  168 (349)
T ss_dssp             EEEEEECSSCE-EEEEEEEEEEC--CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS--
T ss_pred             EEEEEecCCce-EEEEEEEEEec--CCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC--
Confidence            99999998776 55556666653  222111   112234567899999999741    4578899999999886433  


Q ss_pred             CceEEeeeceEEEeccCCCCCeEEEEEEEcCC-Cce---EEEEEEEEEe------CCceeeCCCccE-EecCCCcEEEEE
Q psy17058        228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSA-GKE---VMNAYIHVLT------LPAVTITPSEYV-SVRPGEPLTLEC  296 (471)
Q Consensus       228 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~V~~------~p~~~~~~~~~~-~~~~g~~v~l~C  296 (471)
                      +..+...+..|.|.+++.+|+|.|+|.+.|.. +..   +..+.|.|..      +|.+...+.... .+.+|+.+.|.|
T Consensus       169 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C  248 (349)
T 4dep_C          169 FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPC  248 (349)
T ss_dssp             CSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCE
T ss_pred             ccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEE
Confidence            34445556789999999999999999999976 443   5666777765      344433322122 678999999999


Q ss_pred             EEe----ecCCCeEEEEeCCccCCCcc-c--c---------cccCceeEEEEeecCCCCC-eEEEEEEEcCCCceEEEEE
Q psy17058        297 EAT----GRPMPTVSWVKYIAPFDRNL-E--R---------DELTSRAVYTIASVRESDA-GQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       297 ~~~----g~p~~~i~W~~~~~~~~~~~-~--~---------~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~  359 (471)
                      .+.    |.|.+.+.|++++..+.... .  .         .......+|.|.++..+|+ |.|+|.|.|..|.....+.
T Consensus       249 ~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~  328 (349)
T 4dep_C          249 TVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK  328 (349)
T ss_dssp             EEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC
T ss_pred             EEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEE
Confidence            999    46888999999998875411 1  0         0011245599999999999 9999999999999999999


Q ss_pred             EEEecC
Q psy17058        360 VAVEHR  365 (471)
Q Consensus       360 l~V~~~  365 (471)
                      |.|..+
T Consensus       329 l~v~~~  334 (349)
T 4dep_C          329 VKQKVP  334 (349)
T ss_dssp             ------
T ss_pred             EeeecC
Confidence            988753

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=7.2e-31  Score=241.38  Aligned_cols=261  Identities=17%  Similarity=0.236  Sum_probs=180.9

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      |.|...+..+.+.+|+++.|.|. .+.    +.|+++ +..+.....      ..+.|.|.+++.+|+|.|+|.+.|..+
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERM-SQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBT-TBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECC-CCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            34445556778999999999999 543    999999 555432211      236899999999999999999998776


Q ss_pred             ceeeeeEEEEEeeccCCeeeecCCCc---eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEe
Q psy17058        165 NVFQDYASIQVDKREMPRIRIHPNAS---QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN  241 (471)
Q Consensus       165 ~~~~~~~~l~v~~~~~p~~~~~~~~~---~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~  241 (471)
                      ........+.|.+..+....+.....   ..+.+|+.++|.|.+ . .|.+.++|++++.........  .. ...+.  
T Consensus        76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~w~~~~~~~~~~~~~--~~-~~~~~--  148 (289)
T 3mjg_X           76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-T-DPQLVVTLHEKKGDVALPVPY--DH-QRGFS--  148 (289)
T ss_dssp             ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB-S-CTTSCEEEEESSCCSCCCCCE--ET-TTEEE--
T ss_pred             CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc-C-CCCceEEEEeCCCCCccceee--cC-CcCee--
Confidence            53334455666554333222222212   457899999999999 3 677889998876443332111  11 11121  


Q ss_pred             ccCCCCCeEEEEEEEcCCCce-EEEEEEEEEe--CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc
Q psy17058        242 NIATGDEGKYTCIAENSAGKE-VMNAYIHVLT--LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN  318 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~  318 (471)
                        ...|+|.|+|.+.|..+.. +..+.|.|..  +|.+.+.+.. ..+.+|+++.|.|.+.|+|.+.+.|++++......
T Consensus       149 --~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~-~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~  225 (289)
T 3mjg_X          149 --GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQ-TVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL  225 (289)
T ss_dssp             --ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESC-SEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCC
T ss_pred             --eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCc-ceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCc
Confidence              3579999999999776543 3335566654  5666555433 56889999999999999999999999877654321


Q ss_pred             cc---cc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCC
Q psy17058        319 LE---RD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE  367 (471)
Q Consensus       319 ~~---~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  367 (471)
                      ..   ..    ......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             CCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             ccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            11   00    133568999999999999999999999999999999999998763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=240.03  Aligned_cols=244  Identities=29%  Similarity=0.500  Sum_probs=184.9

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--e--eceEEEeccCC-CCCeEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--E--LGVLRFNNIAT-GDEGKYTC  253 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~-~d~G~Y~C  253 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.++|++++..+.. .+.....  .  ...|.|.+++. +|+|.|+|
T Consensus         5 ~~P~~~~~p-~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            5 EPPRFIKEP-KDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCEEEECC-CCEEEETTSCEEEEEEE-ECSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             cCCeeeecC-CceEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            456665554 45678999999999999 7888899999999987533 2333321  1  25799999998 99999999


Q ss_pred             EEEcCCCceEEEEEEEEEeC-------CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--cccc
Q psy17058        254 IAENSAGKEVMNAYIHVLTL-------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDEL  324 (471)
Q Consensus       254 ~~~~~~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~  324 (471)
                      .+.|..+..+..+.|.|...       |.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ....
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~-~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP-QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECC-CCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCC-ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            99999888888889999875       4555544 346788999999999999999999999999988764321  1112


Q ss_pred             CceeEEEEeecCCCCCeEEEEEEEcCCCceEEE-EEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCc
Q psy17058        325 TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV-ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSN  403 (471)
Q Consensus       325 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  403 (471)
                      ...+.|.|.+++.+|+|.|+|.|.|..|..... ..|.|....                                     
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~-------------------------------------  203 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-------------------------------------  203 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC-------------------------------------
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec-------------------------------------
Confidence            344589999999999999999999999876533 455554321                                     


Q ss_pred             ceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEEecC--eEEECCCC
Q psy17058        404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNG--ELRLGPHK  470 (471)
Q Consensus       404 ~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~~~--~l~i~~~~  470 (471)
                             .+|.+...+....+.+|+.+.|.|.+.|.|.|.|+|+|||..|..+..+..+  .|.|.+++
T Consensus       204 -------~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~  265 (304)
T 2yd9_A          204 -------VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK  265 (304)
T ss_dssp             -------EEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSCC
T ss_pred             -------cCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEcccc
Confidence                   2588888888888999999999999999999999999999999776554433  46666654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.97  E-value=4.9e-30  Score=238.99  Aligned_cols=266  Identities=18%  Similarity=0.255  Sum_probs=181.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      ..+|.|...|. ..+.+|++++|.|. .+. .+.+.|+|+ +..+.....   ....|.|.+++.+|+|.|+|.+.+..+
T Consensus        22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~-g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   98 (316)
T 3vh8_G           22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKE-DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS   98 (316)
T ss_dssp             --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEES-SCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred             CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeC-CCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence            47889999987 67889999999999 544 688999999 444432211   567899999999999999999986322


Q ss_pred             c----eeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE---Eeeec
Q psy17058        165 N----VFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV---YQELG  236 (471)
Q Consensus       165 ~----~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~---~~~~~  236 (471)
                      .    ..+....|.|... .+|.+...+. . .+.+|+.++|.|.+ . .+.+.+.|++++..+........   .....
T Consensus        99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~-~-~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  174 (316)
T 3vh8_G           99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPG-P-LVKSGERVILQCWS-D-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKA  174 (316)
T ss_dssp             SSSBCCCCCCEEEEEECSSCCCEEEEESC-S-EEETTCCEEEEEEE-S-SCCSEEEEEETTCCSCCEEEECEEETTEEEE
T ss_pred             CcceecCCCcEEEEEecCCCCCeEEecCC-C-ccCCCCeEEEEEcC-C-CCCcEEEEEECCCccccceeeeeecCCCceE
Confidence            1    1334455666532 2455554443 2 47899999999998 3 45679999999887533211111   12356


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCc-----eEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEE
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGK-----EVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW  308 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W  308 (471)
                      .|.|.+++.+|+|.|+|.+.|..+.     .+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+. .|.+.+.|
T Consensus       175 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~--~~v~~G~~v~L~C~~~-~~~~~~~W  251 (316)
T 3vh8_G          175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG--PKVQAGESVTLSCSSR-SSYDMYHL  251 (316)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC--SCCCTTSCCEEEEEES-SCCSEEEE
T ss_pred             EEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC--CeecCCCcEEEEEECC-CCCcEEEE
Confidence            7999999999999999999998764     24556677763   345555443  2578999999999997 57789999


Q ss_pred             EeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc-----eEEEEEEEEecCC
Q psy17058        309 VKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT-----EEKVITVAVEHRP  366 (471)
Q Consensus       309 ~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~p  366 (471)
                      ++++..+.....   .........|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.+.|
T Consensus       252 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          252 SREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             EECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            999988753221   1122334789999999  999999999997663     3566778777654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.97  E-value=4.9e-30  Score=232.69  Aligned_cols=247  Identities=15%  Similarity=0.236  Sum_probs=185.6

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CC-CCCC--eEEEEeCCCCCCCCCcc-cCcEEEEcCC---CCCCCeE--EEE
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SN-DPSA--TIKWSKDNQEQLPPNMI-AGETLIINGI---TKADEGV--YIC  157 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p~~--~v~W~~~~~~~~~~~~~-~~~~L~i~~v---~~~D~G~--Y~C  157 (471)
                      ++.+|.+...   ..+.+|++++|.|. .+ .|.+  .+.|+++ +..+..... .+..|.+..+   +.+|+|.  |+|
T Consensus         3 P~~~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~-~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C   78 (265)
T 2oz4_A            3 PATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALG-DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTC   78 (265)
T ss_dssp             CSSCCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEET-TEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeC-CEECCceEeeCCCeEEEEeecccccccCCcceEEE
Confidence            3456666542   37899999999999 55 6766  9999999 655554333 4557777766   7788885  999


Q ss_pred             EEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeece
Q psy17058        158 SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV  237 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  237 (471)
                      .+.|..+. ......|.|....+|.+...   ...+.+|+.++|.|.+ .  |.+.++|  ++..+....      ..+.
T Consensus        79 ~a~n~~~~-~~~~~~l~V~~~p~p~~~~~---~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~------~~~~  143 (265)
T 2oz4_A           79 AVILGNQS-QETLQTVTIYSFPAPNVILT---KPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLG------PRAQ  143 (265)
T ss_dssp             EEEETTEE-EEEEEEEEEECCCCCEEEES---CSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCS------SEEC
T ss_pred             EEecCCCC-cEEEEEEEEeCCCCceeecC---CceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCC------CcEE
Confidence            99998776 55666777764434554432   3467899999999999 3  8899999  666642211      2456


Q ss_pred             EEEeccCCCCCeEEEEEEEcCC-CceE---EEEEEEEEeCCceeeCC-CccEEecCCCcEEEEEEEeecCCCeEEEEeCC
Q psy17058        238 LRFNNIATGDEGKYTCIAENSA-GKEV---MNAYIHVLTLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKYI  312 (471)
Q Consensus       238 l~i~~~~~~d~G~Y~C~~~~~~-~~~~---~~~~l~V~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~  312 (471)
                      |.|..+..+|+|.|+|.+.|.. |...   ..+.|.|.++|.+.... +....+.+|+.+.|.|.+.|+|.|.+.|++++
T Consensus       144 l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~  223 (265)
T 2oz4_A          144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG  223 (265)
T ss_dssp             CEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETT
T ss_pred             EEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECC
Confidence            8899999999999999998644 5543   67888998888775542 23557889999999999999999999999998


Q ss_pred             ccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       313 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      ..+...         +.+  ..++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       224 ~~~~~~---------g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          224 TFPLPI---------GES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             TEECCT---------TSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cccCCC---------CcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            721111         111  24788999999999999999999999999875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=2.3e-30  Score=242.42  Aligned_cols=263  Identities=13%  Similarity=0.188  Sum_probs=175.1

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCC-CCCeEEEEeCCCCCCCC-----------Cc----------ccCcEEEEcCC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SND-PSATIKWSKDNQEQLPP-----------NM----------IAGETLIINGI  147 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~~~-----------~~----------~~~~~L~i~~v  147 (471)
                      ...|...|..+.+.+|+++.|.|. .+. |.+.+.|+|++. ....           +.          .....|.|.++
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~-~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v   81 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAG-PARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI   81 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCS-TTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCC-CCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence            456677788899999999999999 665 888999999843 2210           11          13457999999


Q ss_pred             CCCCCeEEEEEEEecCCce----eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC--eEEEEeCCC
Q psy17058        148 TKADEGVYICSIQNAQGNV----FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP--TQTWIRPDN  221 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~  221 (471)
                      +.+|+|.|+|.+.|..+..    ......|.|.....+.....+  ...+.+|+.++|.|.+ .+.|++  .++|++++.
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~--~~~~~~g~~~~l~C~~-~g~p~~~~~v~W~k~g~  158 (327)
T 2wng_A           82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP--AARATPQHTVSFTCES-HGFSPRDITLKWFKNGN  158 (327)
T ss_dssp             CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC--SSCBCTTCEEEEEEEE-EEEBSSCCEEEEEETTE
T ss_pred             ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc--ccccCCCCEEEEEEEE-eCccCCCcEEEEEECCE
Confidence            9999999999999976531    123345666533222222222  3467899999999999 455443  999999987


Q ss_pred             CCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc---eEEEEEE--EEEeCCceeeCCCccEEecCC
Q psy17058        222 DGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAGK---EVMNAYI--HVLTLPAVTITPSEYVSVRPG  289 (471)
Q Consensus       222 ~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l--~V~~~p~~~~~~~~~~~~~~g  289 (471)
                      .+......       ......+.|.|.....+|.|.|+|.+.|..+.   ......+  .+..+|.+.+.+..   +.+|
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~---~~~G  235 (327)
T 2wng_A          159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAE  235 (327)
T ss_dssp             ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC---CSST
T ss_pred             EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC---cCCC
Confidence            65432211       11111345778777777789999999998765   2334443  34567776665432   7799


Q ss_pred             CcEEEEEEEeec-CCC-eEEEEeCCccCCCccc--c-cc----cCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEE
Q psy17058        290 EPLTLECEATGR-PMP-TVSWVKYIAPFDRNLE--R-DE----LTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVIT  359 (471)
Q Consensus       290 ~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~~--~-~~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  359 (471)
                      +.+.|.|.+.|. |++ .+.|+++|..+.....  . ..    ......|.|..+..+|+|.|+|.|.|..|.. ++++.
T Consensus       236 ~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~  315 (327)
T 2wng_A          236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHD  315 (327)
T ss_dssp             TCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEE
T ss_pred             CcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheE
Confidence            999999999995 444 8999999988753210  0 01    1122568899999999999999999999876 44444


Q ss_pred             E
Q psy17058        360 V  360 (471)
Q Consensus       360 l  360 (471)
                      +
T Consensus       316 ~  316 (327)
T 2wng_A          316 L  316 (327)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=1.3e-30  Score=254.37  Aligned_cols=314  Identities=16%  Similarity=0.237  Sum_probs=212.4

Q ss_pred             eeeccceEEEEecCcEEEEEEeeeCC-----ccEEEeccc--hh-----------------------------h------
Q psy17058         40 VSAENHEVTVYEGGDAELKCNTYYAP-----GRWMWLNFY--SF-----------------------------L------   77 (471)
Q Consensus        40 ~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~~w~~~~--~~-----------------------------~------   77 (471)
                      +...++.+.+.+|+.++|.|.+...+     ..+.|++..  ..                             |      
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            45567889999999999999987555     379998742  00                             0      


Q ss_pred             ---hheeeeeeeecC----------------CCCcEEEcCCceeecCCCcEEEEee-CC-CCCC-eEEEEeCCCCCCCCC
Q psy17058         78 ---SLIIICLAYLSP----------------QANEVQVTPRQQSAPEGSQVTIECK-SN-DPSA-TIKWSKDNQEQLPPN  135 (471)
Q Consensus        78 ---~~~~~c~~~~~~----------------~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p~~-~v~W~~~~~~~~~~~  135 (471)
                         ...|.|.+....                .+|.+.+.+....+.+|+.+.|.|. .+ .|.+ .+.|+++ +..+...
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~-g~~~~~~  162 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID-GSERQNG  162 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEET-TEEECTT
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEEC-CEEcCCC
Confidence               013678775321                2455555443334456889999999 44 6766 8999998 5554433


Q ss_pred             -cc-------------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEE
Q psy17058        136 -MI-------------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI  201 (471)
Q Consensus       136 -~~-------------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L  201 (471)
                       ..             ..+.|.|.+++.+|+|.|+|.|.|..+. ..  ..+.+.....+.. +..+....+.+|+.++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~v~~G~~v~L  238 (438)
T 1qgc_4          163 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST-SP--IVKSFNRNECEVM-LVESGGGLVKPGGSLKL  238 (438)
T ss_dssp             EEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS-SC--EEEEEETTC-CCE-EEEECCEEECTTCCEEE
T ss_pred             ceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC-Cc--eecccccccceeE-EecCCceEEecCCcEEE
Confidence             10             1347999999999999999999998766 32  2333332222222 22233557889999999


Q ss_pred             EEEccCCCC--CCeEEEEeC--CCCCC-----------------cCCCceEEee----eceEEEeccCCCCCeEEEEEEE
Q psy17058        202 QCVLEAGEP--SPTQTWIRP--DNDGK-----------------FGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       202 ~C~~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      .|.+ .+.|  .+.+.|+|+  +..+.                 ...++.+..+    ...|.|.+++.+|+|.|+|.+.
T Consensus       239 ~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  317 (438)
T 1qgc_4          239 SCTA-SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRR  317 (438)
T ss_dssp             EEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEEC
T ss_pred             EEEE-cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEE
Confidence            9999 6666  579999997  33211                 1234444332    3379999999999999999999


Q ss_pred             cCCC-----ceEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCCCcc--cc--
Q psy17058        257 NSAG-----KEVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFDRNL--ER--  321 (471)
Q Consensus       257 ~~~~-----~~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~--~~--  321 (471)
                      |..+     .......|.|..    +|.+...+. ...+.+|+.+.|.|.+.|. |.+ .+.|++++..+....  ..  
T Consensus       318 n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~  396 (438)
T 1qgc_4          318 EDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAP-GSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ  396 (438)
T ss_dssp             CSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECC-CGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEE
T ss_pred             ccCCCccceeeCCCEEEEEecCCCCCCeEEEcCc-ccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCcccc
Confidence            8433     222345666653    444443332 2246689999999999996 887 999999998765211  10  


Q ss_pred             -cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        322 -DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       322 -~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                       ......+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       397 ~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          397 SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             TTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence             111223479999999889 999999999999877665543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=5.2e-28  Score=222.46  Aligned_cols=240  Identities=20%  Similarity=0.318  Sum_probs=182.1

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEe-CCCCCCcC-CCceEEe---eeceEEEeccCCCCCeEEEEE
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIR-PDNDGKFG-PDVEVYQ---ELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~-~~~~~~~~-~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      +.+.+.+. ...+.+|+.++|.|.+ .+.+ .+.+.|++ ++..+... .++.+..   ....|.|.+++.+|+|.|+|.
T Consensus         3 ~~v~~~p~-~~~v~~G~~v~l~C~~-~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            3 LQVDIVPS-QGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             CCEEEESS-SEEEETTCCEEEEEEE-SSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             cceEecCC-CceEeCCCeEEEEEEe-CCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence            34444443 4578899999999999 5554 68999999 66554322 3333322   245899999999999999999


Q ss_pred             EEcCCCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-cccccCceeEEEE
Q psy17058        255 AENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-ERDELTSRAVYTI  332 (471)
Q Consensus       255 ~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i  332 (471)
                      +.|..+. .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ..........|.|
T Consensus        81 ~~n~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIFQKLMFKNAPT-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             EECTTSCEEEEEEEEEEECCSEEEECCS-SEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EEcCCCCeeEEEEEEEeeccccccCCCC-cccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            9998754 56778888888887766653 4678899999999999999999999999998765321 1112234568999


Q ss_pred             eecCCCCCeEEEEEEEcCCCce--EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeee
Q psy17058        333 ASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSV  410 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~  410 (471)
                      .++..+|+|.|+|.|.|..+..  ...+.|.|..+                                             
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~---------------------------------------------  194 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVP---------------------------------------------  194 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEE---------------------------------------------
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEecC---------------------------------------------
Confidence            9999999999999999976543  34566766653                                             


Q ss_pred             cCCeeEEcCC--eeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCce----EE----ecCeEEECCCC
Q psy17058        411 EPPRITLRPV--RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHV----VE----YNGELRLGPHK  470 (471)
Q Consensus       411 ~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~----~~----~~~~l~i~~~~  470 (471)
                        |.+...+.  ...+.+|+.+.|.|.+.|.|.|.++|+|||.+|..+.    ++    .+++|.|.+++
T Consensus       195 --p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~  262 (291)
T 1qz1_A          195 --PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVD  262 (291)
T ss_dssp             --EEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCC
T ss_pred             --CcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecC
Confidence              56655433  4578899999999999999999999999999987654    22    24679998875

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=7.1e-28  Score=238.89  Aligned_cols=313  Identities=14%  Similarity=0.198  Sum_probs=198.9

Q ss_pred             cCCceeecCCCcEEEEee-CCCCC----CeEEEEeCC-CCCC------------------CCCcc-------cCcEEEEc
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPS----ATIKWSKDN-QEQL------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~----~~v~W~~~~-~~~~------------------~~~~~-------~~~~L~i~  145 (471)
                      +|..+.+.+|++++|.|. .+.+.    ..+.||++. +...                  ..+..       ...+|.|.
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            466788999999999999 54332    679999862 1110                  11111       13589999


Q ss_pred             CCCCCCCeEEEEEEEecCC----------c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC
Q psy17058        146 GITKADEGVYICSIQNAQG----------N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS  211 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~  211 (471)
                      +++.+|+|.|+|.+.+..+          .  .......|.|..  ..+|.+....+.......|+.++|.|.+....|.
T Consensus        86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~  165 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT  165 (512)
T ss_pred             cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence            9999999999999987642          1  012334556552  1245544222211102246899999999555576


Q ss_pred             C-eEEEEeCCCCCCcCCC--c----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE-----------EEEEEeC
Q psy17058        212 P-TQTWIRPDNDGKFGPD--V----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA-----------YIHVLTL  273 (471)
Q Consensus       212 ~-~v~W~~~~~~~~~~~~--~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~l~V~~~  273 (471)
                      + .++|++++........  .    ..+...+.|.|.....+ .|.|+|.+.|..+.....+           .+.+..+
T Consensus       166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p  244 (512)
T 1zvo_C          166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ  244 (512)
T ss_pred             ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence            5 9999997543211100  0    01111345888887777 9999999999877654433           2344322


Q ss_pred             ----------------------------------------------------CceeeCCCccEEecCCCcEEEEEEEeec
Q psy17058        274 ----------------------------------------------------PAVTITPSEYVSVRPGEPLTLECEATGR  301 (471)
Q Consensus       274 ----------------------------------------------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~  301 (471)
                                                                          |.+.+.++....+.+|+.+.|.|.+.|+
T Consensus       245 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~  324 (512)
T 1zvo_C          245 PQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS  324 (512)
T ss_pred             CchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece
Confidence                                                                3333333333345679999999999985


Q ss_pred             -CC-CeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe-cCCCCCC
Q psy17058        302 -PM-PTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE-HRPEYGP  370 (471)
Q Consensus       302 -p~-~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p~~~~  370 (471)
                       |+ ..++|++++..+.....        .......+.|.|.....+|.|.|+|.|.|..+... ...+... ...    
T Consensus       325 ~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~----  399 (512)
T 1zvo_C          325 DLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ----  399 (512)
T ss_pred             ECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC----
Confidence             43 38999999987652110        00112235799999999999999999999987653 2222221 110    


Q ss_pred             CCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEE-EEEEecccCCc--eEEEe
Q psy17058        371 ISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIAN-IRCSAIGATPI--SIRWQ  447 (471)
Q Consensus       371 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~v~W~  447 (471)
                                                            ...+|.+.+.+...   .|+.+. |.|.+.|++++  .|+|+
T Consensus       400 --------------------------------------~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~  438 (512)
T 1zvo_C          400 --------------------------------------APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWL  438 (512)
T ss_pred             --------------------------------------CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEE
Confidence                                                  00146665554333   799999 99999996554  68999


Q ss_pred             cCCCCCCCc
Q psy17058        448 PLQGYFPSH  456 (471)
Q Consensus       448 ~~g~~l~~~  456 (471)
                      |||+++..+
T Consensus       439 k~g~~~~~~  447 (512)
T 1zvo_C          439 EDQREVNTS  447 (512)
T ss_pred             ECCeECcCc
Confidence            999998654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=224.62  Aligned_cols=240  Identities=22%  Similarity=0.327  Sum_probs=179.7

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe-CCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-PDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      +|.+.+.+ ....+.+|+.++|.|.+ .+.|. .+.|++ ++..+....++.+...+  ..|.|.+++.+|+|.|+|.+.
T Consensus         4 ~p~v~~~~-~~~~v~~G~~v~l~C~~-~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~   80 (291)
T 2wim_A            4 LLQVTISL-SKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT   80 (291)
T ss_dssp             CCEEEESC-SEEEEETTCCEEEEEEE-ESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEec-cceEecCCCcEEEEEEE-eCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEe
Confidence            45555554 35678999999999999 56664 999999 55554445555554432  479999999999999999999


Q ss_pred             cCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc-ccccccCceeEEEEee
Q psy17058        257 NSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN-LERDELTSRAVYTIAS  334 (471)
Q Consensus       257 ~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~l~i~~  334 (471)
                      |..+.. +..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...........|.|.+
T Consensus        81 n~~g~~~~~~~~l~v~~~~~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           81 DAKGQTQEATVVLEIYQKLTFREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             CSSSCEEEEEEEEEEECCCBCCSCC-CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETT
T ss_pred             cccCceEEEEEEEEecCCcceEeCC-CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEe
Confidence            987765 567788888877765544 3467899999999999999999999999998876532 1111223456799999


Q ss_pred             cCCCCCeEEEEEEEcCCCce--EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecC
Q psy17058        335 VRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP  412 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~  412 (471)
                      +..+|+|.|+|.|.|..+..  ...+.|.+..+                                               
T Consensus       160 v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~-----------------------------------------------  192 (291)
T 2wim_A          160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP-----------------------------------------------  192 (291)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBC-----------------------------------------------
T ss_pred             cchhhCEEEEEEEEECCCCeeEEeeEEEEeccC-----------------------------------------------
Confidence            99999999999999988654  34566677664                                               


Q ss_pred             CeeEEcCC--eeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ecCeEEECCCC
Q psy17058        413 PRITLRPV--RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YNGELRLGPHK  470 (471)
Q Consensus       413 p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~l~i~~~~  470 (471)
                      |.+...+.  ...+.+|+.+.|.|.+.|.|.|.++|+|||..|..+.++    .+++|.|.+++
T Consensus       193 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  256 (291)
T 2wim_A          193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  256 (291)
T ss_dssp             CCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCC
T ss_pred             CccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCC
Confidence            34443333  356788999999999999999999999999998765433    35678888764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=1.4e-28  Score=240.29  Aligned_cols=307  Identities=15%  Similarity=0.190  Sum_probs=200.0

Q ss_pred             eccceEEEEecCcEEEEEEeeeC---CccEEEeccc--hh-----------------------h-----------h----
Q psy17058         42 AENHEVTVYEGGDAELKCNTYYA---PGRWMWLNFY--SF-----------------------L-----------S----   78 (471)
Q Consensus        42 ~~~~~~~v~~g~~~~l~C~~~~~---~~~~~w~~~~--~~-----------------------~-----------~----   78 (471)
                      ..+..+.+.+|+.++|.|.+...   ...+.|++..  ..                       +           .    
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence            34567899999999999999854   3578886531  00                       0           0    


Q ss_pred             -------heeeeeeeecC-------------------CCCcEEEcCCceeecCCCcEEEEee-CC-CCCC-eEEEEeCCC
Q psy17058         79 -------LIIICLAYLSP-------------------QANEVQVTPRQQSAPEGSQVTIECK-SN-DPSA-TIKWSKDNQ  129 (471)
Q Consensus        79 -------~~~~c~~~~~~-------------------~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p~~-~v~W~~~~~  129 (471)
                             ..|.|.+....                   .+|.+...+....+.+|+.++|.|. .+ .|.+ .+.|+++ +
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~-~  163 (444)
T 1igt_B           85 RLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG-S  163 (444)
T ss_dssp             SCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG-T
T ss_pred             CCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC-C
Confidence                   12578765321                   1233333333334579999999999 54 4665 9999999 4


Q ss_pred             CCCC----CC------cccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe----------------eccCCee
Q psy17058        130 EQLP----PN------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD----------------KREMPRI  183 (471)
Q Consensus       130 ~~~~----~~------~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~----------------~~~~p~~  183 (471)
                      ..+.    ..      ....+.|.|.+++.+| |.|+|.|.|..+. ......+.+.                ...+|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v  241 (444)
T 1igt_B          164 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV  241 (444)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTT-EEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred             CCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCC-cceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence            3321    00      0123579999999999 9999999998876 3333333321                1124555


Q ss_pred             eecCCCcee-EEcCCeEEEEEEccCCC---C-CCeEEEEeCCCCCCcCCCc--eE-----EeeeceEEEeccCCCCCeEE
Q psy17058        184 RIHPNASQT-FIVGDRADIQCVLEAGE---P-SPTQTWIRPDNDGKFGPDV--EV-----YQELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       184 ~~~~~~~~~-v~~g~~~~L~C~~~~~~---p-~~~v~W~~~~~~~~~~~~~--~~-----~~~~~~l~i~~~~~~d~G~Y  251 (471)
                      .+.++.... +.+|+.++|.|.+. +.   | .+.++|++++..+......  ..     ....+.|.|.++..+|+|.|
T Consensus       242 ~~~~p~~~~~~~~G~~~~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  320 (444)
T 1igt_B          242 FIFPPKIKDVLMISLSPIVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF  320 (444)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEE-EECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred             EecCCchhheeecCCCcEEEEEEe-ecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence            444443333 57899999999994 54   3 4699999998764332111  11     12245799999999999999


Q ss_pred             EEEEEcCCCceEEEEEE----EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc---
Q psy17058        252 TCIAENSAGKEVMNAYI----HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD---  322 (471)
Q Consensus       252 ~C~~~~~~~~~~~~~~l----~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~---  322 (471)
                      +|.|.|..+.......+    .+..+|.+.+.+.....+..| .+.|.|.+.| +|.+ .+.|+++|..+.......   
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  399 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVL  399 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE
T ss_pred             EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEcccccccccee
Confidence            99999987765322333    345677776654332233444 5999999998 5665 899999998874321100   


Q ss_pred             ----ccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        323 ----ELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       323 ----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                          .....+.|.|.....+|.|.|+|.|.|....
T Consensus       400 ~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          400 DSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             CTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             CCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence                1112345677777778899999999998643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=230.74  Aligned_cols=250  Identities=13%  Similarity=0.156  Sum_probs=180.9

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      .+|.+. .+. ...+.+|+.++|.|.+....|.+.+.|++++..+....++.+......|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~~P~~~-~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            6 TGPHFV-EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SCCEEE-EEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCCcEe-eee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            345544 332 367889999999999844448899999999987665555555555568999999999999999999999


Q ss_pred             CCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee----------cCCCeEEEEeCCccCCCcc--cccccCc
Q psy17058        259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG----------RPMPTVSWVKYIAPFDRNL--ERDELTS  326 (471)
Q Consensus       259 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g----------~p~~~i~W~~~~~~~~~~~--~~~~~~~  326 (471)
                      .+.....+.|.|...|.+...+ ....+.+|+.+.|.|.+.+          .|.+.+.|++++..+....  .......
T Consensus        84 ~g~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  162 (317)
T 2y25_A           84 RGKDKSRLKLVDEAFKELMMEV-CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE  162 (317)
T ss_dssp             SCEEEEEECCSTHHHHHHHHHH-HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSS
T ss_pred             CCcEEEEEEEEEecCccccccC-CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCC
Confidence            8877766666655444332221 1234567777888887766          6888999999998876432  2222344


Q ss_pred             eeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC------------CCCCCCCCCCCccccCCCcccCCCCCCC
Q psy17058        327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP------------EYGPISPRPGADILPDGDEYYRPEPEEG  394 (471)
Q Consensus       327 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~  394 (471)
                      ...|.|.+++.+|+|.|+|.|.|..|....++.|.+....            .+..                        
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~------------------------  218 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE------------------------  218 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHT------------------------
T ss_pred             EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCc------------------------
Confidence            5679999999999999999999999998888888764210            0000                        


Q ss_pred             ceEEEcCCcceEEeeecCCeeEEc-CCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE----ecC---eEEE
Q psy17058        395 EYVYAVGSNASISCSVEPPRITLR-PVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE----YNG---ELRL  466 (471)
Q Consensus       395 ~~~~~~~~~~~y~c~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~----~~~---~l~i  466 (471)
                                     ..+|.+... +....+.+|+.+.|.|.+.|+|.|.++|+|||..|..+.++    .++   +|.|
T Consensus       219 ---------------~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i  283 (317)
T 2y25_A          219 ---------------KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTI  283 (317)
T ss_dssp             ---------------TTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEE
T ss_pred             ---------------CCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEE
Confidence                           013555544 44578999999999999999999999999999999766543    213   8998


Q ss_pred             CCCC
Q psy17058        467 GPHK  470 (471)
Q Consensus       467 ~~~~  470 (471)
                      .+++
T Consensus       284 ~~v~  287 (317)
T 2y25_A          284 NGVS  287 (317)
T ss_dssp             BSCC
T ss_pred             CCCC
Confidence            8875

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=5.7e-28  Score=228.28  Aligned_cols=227  Identities=18%  Similarity=0.254  Sum_probs=159.7

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCC-----------CCeEEEEeCCCCCC----cC---CCceEEeeeceEEEeccCCC
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEP-----------SPTQTWIRPDNDGK----FG---PDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p-----------~~~v~W~~~~~~~~----~~---~~~~~~~~~~~l~i~~~~~~  246 (471)
                      ..+.....+.+|+.++|.|.+ .+.|           .+.+.|+|++....    ..   ....+...++.|.|.+++.+
T Consensus        11 ~~~~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   89 (349)
T 4dep_C           11 LDTMRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN   89 (349)
T ss_dssp             ECCCCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGG
T ss_pred             cceeeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChh
Confidence            344456678999999999998 5544           48999999985321    11   23334445778999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCC---CccEEecCCCcEEEEEEE-----eecCCCeEEEEeCCccCCCc
Q psy17058        247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP---SEYVSVRPGEPLTLECEA-----TGRPMPTVSWVKYIAPFDRN  318 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~~g~~v~l~C~~-----~g~p~~~i~W~~~~~~~~~~  318 (471)
                      |+|.|+|.+.|..+.....+.|.|..++......   .....+.+|+.+.|.|.+     .|.|.+.+.|++++..+...
T Consensus        90 D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~  169 (349)
T 4dep_C           90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF  169 (349)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC
T ss_pred             hCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc
Confidence            9999999999998888888899998766533221   223477899999999985     67899999999999887543


Q ss_pred             ccccccCceeEEEEeecCCCCCeEEEEEEEcCC-Cce---EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCC
Q psy17058        319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSA-GTE---EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEG  394 (471)
Q Consensus       319 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~  394 (471)
                      ..  .......|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|..++..                          
T Consensus       170 ~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~--------------------------  221 (349)
T 4dep_C          170 NN--VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN--------------------------  221 (349)
T ss_dssp             SS--EEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG--------------------------
T ss_pred             cc--eeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC--------------------------
Confidence            22  22334689999999999999999999987 554   56777877764210                          


Q ss_pred             ceEEEcCCcceEEeeecCCeeEEcCCee--eeeCCCeEEEEEEec----ccCCceEEEecCCCCCCC
Q psy17058        395 EYVYAVGSNASISCSVEPPRITLRPVRQ--TVKPGDIANIRCSAI----GATPISIRWQPLQGYFPS  455 (471)
Q Consensus       395 ~~~~~~~~~~~y~c~~~~p~~~~~~~~~--~~~~g~~~~l~C~~~----g~p~~~v~W~~~g~~l~~  455 (471)
                                     ..+|.|...+...  .+.+|+.+.|.|.+.    |.|.+.++|+|||..|..
T Consensus       222 ---------------~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          222 ---------------AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             ---------------CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             ---------------CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence                           0146776555433  788999999999999    578899999999999876

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=214.92  Aligned_cols=250  Identities=20%  Similarity=0.320  Sum_probs=184.0

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-cc--------cCcEEEEcCCCCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-MI--------AGETLIINGITKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-~~--------~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ..+|.|...|..+.+.+|++++|.|. .+.|.+.+.|+++ +..+... ..        ....|.|.+++.+|+|.|+|.
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEET-TEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEEC-CEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            35889999999999999999999999 7888999999999 5444322 11        123899999999999999999


Q ss_pred             EEecCCceeeeeEEEEEeeccCCeeee----cCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe-
Q psy17058        159 IQNAQGNVFQDYASIQVDKREMPRIRI----HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-  233 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~~~p~~~~----~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-  233 (471)
                      +.|..+. ......|.|.  .+|.+..    .......+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+.. 
T Consensus        81 a~n~~g~-~~~~~~l~V~--~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (305)
T 2nzi_A           81 ATNQGGS-VSGTASLEVE--VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (305)
T ss_dssp             EEETTEE-EEEEEEEEEC--EEEEECCCHHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred             EEcCCCC-ccceEEEEEe--cCCccCCCccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEECCCCCcEEEEEc
Confidence            9998776 5555556654  3333321    11234567899999999999 788999999999988766555555442 


Q ss_pred             -eeceEEEec-cCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEE--------------E
Q psy17058        234 -ELGVLRFNN-IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC--------------E  297 (471)
Q Consensus       234 -~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C--------------~  297 (471)
                       ....|.|.+ +...|.|.|+|.+.|..|.....+.|.|...|......  ......+..+.|.|              .
T Consensus       157 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~--~~~~~~~~~v~l~w~~p~~~g~~~i~~y~  234 (305)
T 2nzi_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV--KVSDVSRDSVNLTWTEPASDGGSKITNYI  234 (305)
T ss_dssp             SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEE--EEESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred             CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCc--eeeeccCCEEEEEEcCCccCCCCceeEEE
Confidence             245799999 99999999999999999998889999998766432111  01112344444444              4


Q ss_pred             EeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        298 ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       298 ~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +...+.+...|.+.+..           ....|.|.++...+.|.|+|.|.|..|....
T Consensus       235 v~~~~~~~~~w~~~~~~-----------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~  282 (305)
T 2nzi_A          235 VEKCATTAERWLRVGQA-----------RETRYTVINLFGKTSYQFRVIAENKFGLSKP  282 (305)
T ss_dssp             EEEEETTSCCEEEEEEE-----------SSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             EEEecCCCCccEECccc-----------cCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence            44444444455543221           2567999999999999999999999997643

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=6.2e-28  Score=227.11  Aligned_cols=233  Identities=16%  Similarity=0.237  Sum_probs=182.1

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccC------CCCCCeEEEEeCCCCCCcC--CCceEEeeeceEEEeccCCCCCeE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEA------GEPSPTQTWIRPDNDGKFG--PDVEVYQELGVLRFNNIATGDEGK  250 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~------~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~  250 (471)
                      ..|.+...+ ....+.+|+.++|.|.+..      +.|.+.+.|++++..+...  ....+...++.|.|.+++.+|+|.
T Consensus        17 ~~p~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           17 SCRFRGRHY-KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             -CEEEEECS-CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             hhHhhCcCc-eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            345555544 4667899999999999931      7888999999999874332  234444557789999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEEeCCceeeC-CCccEEecCCCcEEEEEE-----EeecCCCeEEEEeCCccCCCcc-cccc
Q psy17058        251 YTCIAENSAGKEVMNAYIHVLTLPAVTIT-PSEYVSVRPGEPLTLECE-----ATGRPMPTVSWVKYIAPFDRNL-ERDE  323 (471)
Q Consensus       251 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~~g~~v~l~C~-----~~g~p~~~i~W~~~~~~~~~~~-~~~~  323 (471)
                      |+|.+.|..+.....+.|.|...+..... ......+.+|+.+.|.|.     +.|.|.+.+.|++++..+.... ....
T Consensus        96 Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~  175 (339)
T 3o4o_C           96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS  175 (339)
T ss_dssp             EECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE
T ss_pred             EEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE
Confidence            99999999888888889999877653211 111246789999999999     7889999999999998876442 2122


Q ss_pred             cCceeEEEEeecCCCCCeEEEEEEEcCCC----ceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEE
Q psy17058        324 LTSRAVYTIASVRESDAGQYKCIGKNSAG----TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYA  399 (471)
Q Consensus       324 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  399 (471)
                      ......|.|.+++.+|+|.|+|.|.|..|    ..+..+.|.|...+..                               
T Consensus       176 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~-------------------------------  224 (339)
T 3o4o_C          176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE-------------------------------  224 (339)
T ss_dssp             CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC-------------------------------
T ss_pred             cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC-------------------------------
Confidence            23346899999999999999999999987    4567788888765311                               


Q ss_pred             cCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEe---cccC-CceEEEecCCCCCC
Q psy17058        400 VGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSA---IGAT-PISIRWQPLQGYFP  454 (471)
Q Consensus       400 ~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~g~p-~~~v~W~~~g~~l~  454 (471)
                                 .+|.+...+....+.+|+.+.|.|.+   .|.| ++.+.|++||.++.
T Consensus       225 -----------~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~  272 (339)
T 3o4o_C          225 -----------TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE  272 (339)
T ss_dssp             -----------CCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSS
T ss_pred             -----------CCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecc
Confidence                       25777777767889999999999999   8999 78999999999875

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.95  E-value=2.9e-27  Score=217.17  Aligned_cols=231  Identities=18%  Similarity=0.203  Sum_probs=174.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      .....+.+|+.++|.|.+ .+    .+.|++++....   ..........|.|.+++..|+|.|+|.+.|..+..+..+.
T Consensus        11 ~~~~~v~~G~~v~L~C~~-~~----~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   82 (289)
T 3ejj_X           11 GPELVVEPGETVTLRCVS-NG----SVEWDGPISPYW---TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIH   82 (289)
T ss_dssp             SSEEEECTTCCEEEEEEC-SS----CCEEECSCSSSS---EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEE
T ss_pred             CceEEECCCCCEEEEEEe-CC----cEEEccCCCceE---EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEE
Confidence            345678899999999998 44    499998765421   1122233578999999999999999999988888888889


Q ss_pred             EEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCe-EEEEe-CCccCCCcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVK-YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       268 l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      |.|..+|...........+.+|+++.|.|.+.+.+.+. +.|++ ++..+..... ........|.|.+++.+|+|.|+|
T Consensus        83 l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C  161 (289)
T 3ejj_X           83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLDSNTYVC  161 (289)
T ss_dssp             EEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCC-EEEETTTEEEESSCCGGGCEEEEE
T ss_pred             EEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCcc-EEECCCCCEEEeecccccCEEEEE
Confidence            99988776444334567899999999999999877664 99986 4544432222 222345679999999999999999


Q ss_pred             EEE-cCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeee
Q psy17058        346 IGK-NSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTV  424 (471)
Q Consensus       346 ~a~-n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~  424 (471)
                      .|. |..+..+..+.|.|...+                                           ..+|.+...+....+
T Consensus       162 ~a~~~~~~~~~~~~~l~V~~~~-------------------------------------------~~~p~i~~~~~~~~~  198 (289)
T 3ejj_X          162 KTMVNGRESTSTGIWLKVNRVH-------------------------------------------PEPPQIKLEPSKLVR  198 (289)
T ss_dssp             EEEETTEEEECCCEEEEEESSC-------------------------------------------CCCCEEEEESSSEEC
T ss_pred             EEEeCCCccccccEEEEEEECC-------------------------------------------CCCCeEEecCCceEE
Confidence            999 555666777888887532                                           126889888888888


Q ss_pred             eCCCeEEEEEEecc-cCCceEEEecCCCCCCCceEE--------ecCeEEECCCC
Q psy17058        425 KPGDIANIRCSAIG-ATPISIRWQPLQGYFPSHVVE--------YNGELRLGPHK  470 (471)
Q Consensus       425 ~~g~~~~l~C~~~g-~p~~~v~W~~~g~~l~~~~~~--------~~~~l~i~~~~  470 (471)
                      .+|+.+.|.|.+.+ .|.+.++|+++|..+......        ..++|.|.+++
T Consensus       199 ~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  253 (289)
T 3ejj_X          199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD  253 (289)
T ss_dssp             CSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCC
T ss_pred             EeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeec
Confidence            89999999999998 788999999999988764332        36789988875

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.95  E-value=4.5e-26  Score=224.40  Aligned_cols=245  Identities=19%  Similarity=0.328  Sum_probs=164.1

Q ss_pred             cCCCcEEEEee-CCC-CC-C-eEEEEeCCCCCCCCC--------c----ccCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058        104 PEGSQVTIECK-SND-PS-A-TIKWSKDNQEQLPPN--------M----IAGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus       104 ~~G~~v~l~C~-~~~-p~-~-~v~W~~~~~~~~~~~--------~----~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      .+|+.++|.|. .+. |. + .|.|+++ +......        .    ...+.|.|..+..+|+|.|+|.|.|..+.  
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~-~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~--  215 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSES-GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP--  215 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCC-CcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC--
Confidence            68999999999 554 65 4 9999998 4321100        0    02236889999999999999999998754  


Q ss_pred             eeeEEEEEeec------------------cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC---CeEEEEeCCCCCCcC
Q psy17058        168 QDYASIQVDKR------------------EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS---PTQTWIRPDNDGKFG  226 (471)
Q Consensus       168 ~~~~~l~v~~~------------------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~---~~v~W~~~~~~~~~~  226 (471)
                      .....+.+.+.                  .+|.+.+.++....+.+|+.++|.|.+. +.++   +.++| + +..+...
T Consensus       216 ~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~-g~~p~~~~~i~W-~-~~~~~~~  292 (475)
T 1iga_A          216 SQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLT-GLRDASGVTFTW-T-PSSGKSA  292 (475)
T ss_pred             ceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEE-cccCCCceEEEE-C-CCCcCCc
Confidence            22233332221                  2344444443333457999999999994 5433   69999 4 4332211


Q ss_pred             CC--ce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE---EEeCCceeeCCCccEEecCCCcEEEEE
Q psy17058        227 PD--VE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH---VLTLPAVTITPSEYVSVRPGEPLTLEC  296 (471)
Q Consensus       227 ~~--~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~---V~~~p~~~~~~~~~~~~~~g~~v~l~C  296 (471)
                      ..  ..     .....+.|.|.++..+|+|.|+|.+.|..+.......|.   +..+|.+.+.+.....+.+|+.+.|.|
T Consensus       293 ~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C  372 (475)
T 1iga_A          293 VQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTC  372 (475)
T ss_pred             cccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEE
Confidence            10  00     011245799999999999999999999887754444553   356777766654433467899999999


Q ss_pred             EEeec-CC-CeEEEEeCCccCCCcc------ccc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        297 EATGR-PM-PTVSWVKYIAPFDRNL------ERD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       297 ~~~g~-p~-~~i~W~~~~~~~~~~~------~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+.|. |+ +.+.|+++|..+....      ...      .....+.|.|.....+|.|.|+|.|.|.....
T Consensus       373 ~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~  444 (475)
T 1iga_A          373 LARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  444 (475)
T ss_pred             EEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence            99985 43 4999999998875431      000      11123567788878889999999999987654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.95  E-value=2.1e-27  Score=222.46  Aligned_cols=232  Identities=16%  Similarity=0.198  Sum_probs=169.6

Q ss_pred             ceeEEcCCeEEEEEEccCC--------CCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCe-EEEEEEEcCCC
Q psy17058        190 SQTFIVGDRADIQCVLEAG--------EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEG-KYTCIAENSAG  260 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~--------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~  260 (471)
                      ...+.+|+.+.|.|.+...        .|.+.++|+|++..+....+.   ...+.|.|.+++.+|+| .|+|.+.|..|
T Consensus        38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g  114 (329)
T 3oq3_B           38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNGDLWIANYTSNDSHRRYLCTVTTKNG  114 (329)
T ss_dssp             EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred             eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence            4457899999999998432        366799999999875544333   23778999999999999 99999999887


Q ss_pred             ceEEEEEEEEEe-CCceeeCCCccEEecCCCcEEEEEEEeecC-CCeEEEEeCCccCCCcccccccCceeEEEEeecCCC
Q psy17058        261 KEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES  338 (471)
Q Consensus       261 ~~~~~~~l~V~~-~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  338 (471)
                      .......+.+.. +|.+. .+.....+.+|+.+.|.|.+.|.| .+.+.|++++..+....... ......|.|.+++.+
T Consensus       115 ~~~~~~~~~v~~~~p~~~-~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~-~~~~~~L~I~~v~~~  192 (329)
T 3oq3_B          115 DCVQGIVRSHIRKPPSCI-PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY-SQSGQNLIIHNPELE  192 (329)
T ss_dssp             CEEEEEEEEEECCCCSCE-EEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSE-EEETTEEEECSCCGG
T ss_pred             ceeeEEEEEEEcCCCcEe-ccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceE-ecCCCEEEEeecChh
Confidence            654444334443 33322 221122456799999999999999 89999999998875322111 122589999999999


Q ss_pred             CCeEEEEEEEcC--CCceEEE----EEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecC
Q psy17058        339 DAGQYKCIGKNS--AGTEEKV----ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP  412 (471)
Q Consensus       339 d~G~Y~C~a~n~--~g~~~~~----~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~  412 (471)
                      |+|.|+|.|.|.  .|.....    +.|.|..+|..                                          ..
T Consensus       193 D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~------------------------------------------~~  230 (329)
T 3oq3_B          193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH------------------------------------------RF  230 (329)
T ss_dssp             GCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC------------------------------------------CE
T ss_pred             hCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC------------------------------------------CC
Confidence            999999999997  6654333    77888765311                                          01


Q ss_pred             CeeEEcCCeeeeeCCCeEEEEEEecccC---Cc-eEEEecCCCCC-CCceE----------EecCeEEECCCC
Q psy17058        413 PRITLRPVRQTVKPGDIANIRCSAIGAT---PI-SIRWQPLQGYF-PSHVV----------EYNGELRLGPHK  470 (471)
Q Consensus       413 p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~-~v~W~~~g~~l-~~~~~----------~~~~~l~i~~~~  470 (471)
                      |.+  .+....+.+|+.+.|.|.+.|.|   ++ .+.|+|||..+ ..+..          ...++|.|.+++
T Consensus       231 ~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~  301 (329)
T 3oq3_B          231 KLI--LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT  301 (329)
T ss_dssp             EEE--CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCC
T ss_pred             cee--cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEecc
Confidence            233  56668899999999999999998   67 89999999985 33221          135678988875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=2.7e-27  Score=219.88  Aligned_cols=249  Identities=12%  Similarity=0.101  Sum_probs=177.2

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      ...+.+|+.+.|.|....+.|.+.+.|+|++..+....++.+...+  ..|.|.+++.+|+|.|+|.+.|..+... +..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence            3457789999999998667889999999999887766677666533  5899999999999999999999877544 555


Q ss_pred             EEEEe------------CCceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCccc--cc--ccCceeEE
Q psy17058        268 IHVLT------------LPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLE--RD--ELTSRAVY  330 (471)
Q Consensus       268 l~V~~------------~p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~--~~--~~~~~~~l  330 (471)
                      |.|..            +|.+...+.....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  ..  ......+|
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L  168 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM  168 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEE
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEE
Confidence            66543            566555433356889999999999999 889999999999988764321  11  12345669


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCC-CCC-CCCccccCCCcccCCCCCCCceEEEcCCcceEEe
Q psy17058        331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI-SPR-PGADILPDGDEYYRPEPEEGEYVYAVGSNASISC  408 (471)
Q Consensus       331 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~-~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c  408 (471)
                      .|.+++.+|+|.|+|.|.|..+.....  +.+......... .+. ......                            
T Consensus       169 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------------------------  218 (312)
T 2y23_A          169 FMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWI----------------------------  218 (312)
T ss_dssp             EESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred             EEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchh----------------------------
Confidence            999999999999999998755444433  333100000000 000 000000                            


Q ss_pred             eecCCeeEEcCCeeeeeCCCeEEEEEEecccCCc-eEEEecCCCCCCCceEE----ecCeEEECCCC
Q psy17058        409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SIRWQPLQGYFPSHVVE----YNGELRLGPHK  470 (471)
Q Consensus       409 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~l~~~~~~----~~~~l~i~~~~  470 (471)
                      ...+|.|.... ...+.+|+.+.|.|.+.|.|++ .++|+|||.+|..+.++    ..++|.|.+++
T Consensus       219 ~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~  284 (312)
T 2y23_A          219 RKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS  284 (312)
T ss_dssp             HHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCS
T ss_pred             hccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCC
Confidence            01246766443 3788899999999999999998 99999999998754433    22588888875

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=8.6e-27  Score=218.46  Aligned_cols=243  Identities=22%  Similarity=0.360  Sum_probs=179.7

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCC----CCCeEEEEeCCCCC-----------------CcCCCceEE---eee
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGE----PSPTQTWIRPDNDG-----------------KFGPDVEVY---QEL  235 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~----p~~~v~W~~~~~~~-----------------~~~~~~~~~---~~~  235 (471)
                      +|...+..+....+.+|+.++|.|.+ .+.    +.+.+.|++++...                 ....++.+.   ...
T Consensus        13 ~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~   91 (331)
T 3u83_A           13 DPSQVVQVNDSMYGFIGTDVVLHCSF-ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD   91 (331)
T ss_dssp             --------CEEEEEETTCCEEECCBC-SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred             CCcceEEcCCcEEEEecCCEEEeeec-CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence            34444555556788999999999998 443    44579999965220                 122333322   124


Q ss_pred             ceEEEeccCCCCCeEEEEE-EEcCCCceEEEEEEEEEeCCceeeC-CCccEEecCC---CcEEEEEE-EeecCCCeEEEE
Q psy17058        236 GVLRFNNIATGDEGKYTCI-AENSAGKEVMNAYIHVLTLPAVTIT-PSEYVSVRPG---EPLTLECE-ATGRPMPTVSWV  309 (471)
Q Consensus       236 ~~l~i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~~g---~~v~l~C~-~~g~p~~~i~W~  309 (471)
                      ..|.|.+++.+|+|.|+|. +.+..+.....+.|.|..+|.+.+. ......+.+|   +.+.|.|. +.+.|.+.+.|+
T Consensus        92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~  171 (331)
T 3u83_A           92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWE  171 (331)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEE
T ss_pred             ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEE
Confidence            6799999999999999998 5555667788889999988877543 3345678888   77999998 788999999999


Q ss_pred             eCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCc
Q psy17058        310 KYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE  385 (471)
Q Consensus       310 ~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~  385 (471)
                      +++.......    ........+.|.|..+..+|+|.|+|.|.|..|..+.++.|.|..+                    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~--------------------  231 (331)
T 3u83_A          172 TRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE--------------------  231 (331)
T ss_dssp             ESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE--------------------
T ss_pred             cCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC--------------------
Confidence            9643322111    1111223467889999999999999999999999888889888764                    


Q ss_pred             ccCCCCCCCceEEEcCCcceEEeeecCCeeEEcC-CeeeeeCCCeEEEEEEecccCCce-EEEecCCCCCCCceEEecCe
Q psy17058        386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRP-VRQTVKPGDIANIRCSAIGATPIS-IRWQPLQGYFPSHVVEYNGE  463 (471)
Q Consensus       386 w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~  463 (471)
                                                 |.+...+ ....+.+|+.+.|.|.+.|+|.|. ++|+|+|..+..+....+++
T Consensus       232 ---------------------------P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~  284 (331)
T 3u83_A          232 ---------------------------PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRT  284 (331)
T ss_dssp             ---------------------------EEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTE
T ss_pred             ---------------------------CeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcE
Confidence                                       5555443 346688999999999999999998 99999999999888888999


Q ss_pred             EEEC-CCC
Q psy17058        464 LRLG-PHK  470 (471)
Q Consensus       464 l~i~-~~~  470 (471)
                      |.|. +++
T Consensus       285 L~i~~~v~  292 (331)
T 3u83_A          285 LFFKGPIN  292 (331)
T ss_dssp             EEECSCCC
T ss_pred             EEEeCCCc
Confidence            9998 665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=2.1e-28  Score=229.81  Aligned_cols=237  Identities=21%  Similarity=0.336  Sum_probs=114.5

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +....+.+|+.++|.|.+....|.+.+.|+|++..+....++.+  .++.|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~   91 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS   91 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--ccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence            44567889999999999944446789999999987655544433  3578999999999999999999998 66667777


Q ss_pred             EEEEeCCce---------------------eeCC----CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--
Q psy17058        268 IHVLTLPAV---------------------TITP----SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--  320 (471)
Q Consensus       268 l~V~~~p~~---------------------~~~~----~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--  320 (471)
                      |.|...+..                     ...+    .....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  
T Consensus        92 l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  171 (334)
T 1ry7_B           92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG  171 (334)
T ss_dssp             ---------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT
T ss_pred             EEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc
Confidence            777654321                     1111    1124678999999999999999999999999988764322  


Q ss_pred             -ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEE
Q psy17058        321 -RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYA  399 (471)
Q Consensus       321 -~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  399 (471)
                       .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+..                               
T Consensus       172 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~-------------------------------  220 (334)
T 1ry7_B          172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-------------------------------  220 (334)
T ss_dssp             CCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCS-------------------------------
T ss_pred             ceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCC-------------------------------
Confidence             122345568999999999999999999999999999999999875311                               


Q ss_pred             cCCcceEEeeecCCeeEE-cCCeeeeeCCCeEEEEEEecccCCceEEEec----CCCCCCCceEE-----e---------
Q psy17058        400 VGSNASISCSVEPPRITL-RPVRQTVKPGDIANIRCSAIGATPISIRWQP----LQGYFPSHVVE-----Y---------  460 (471)
Q Consensus       400 ~~~~~~y~c~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~----~g~~l~~~~~~-----~---------  460 (471)
                                  +|.+.. .+....+.+|+.+.|.|.+.|.|.+.++|+|    ||..+..+...     .         
T Consensus       221 ------------~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (334)
T 1ry7_B          221 ------------RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK  288 (334)
T ss_dssp             ------------SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCT
T ss_pred             ------------CCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccc
Confidence                        244433 2455788999999999999999999999999    78877644221     1         


Q ss_pred             -cCeEEECCCC
Q psy17058        461 -NGELRLGPHK  470 (471)
Q Consensus       461 -~~~l~i~~~~  470 (471)
                       .++|.|.+++
T Consensus       289 ~~~~L~i~~v~  299 (334)
T 1ry7_B          289 ELEVLSLHNVT  299 (334)
T ss_dssp             TCCCEEECSCC
T ss_pred             cccEEEEccCC
Confidence             1379988875

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=1.2e-26  Score=215.85  Aligned_cols=234  Identities=19%  Similarity=0.359  Sum_probs=173.2

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCC-----eEEEEeCCCCCCc-------------CCCceEE-------eeeceEEEec
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSP-----TQTWIRPDNDGKF-------------GPDVEVY-------QELGVLRFNN  242 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~-----~v~W~~~~~~~~~-------------~~~~~~~-------~~~~~l~i~~  242 (471)
                      +....+..|++++|.|.+ .+.+.+     .++|+|++.....             ..+..+.       ..+.+|.|.+
T Consensus         7 P~~v~~~~G~~v~L~C~v-~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            7 PTQVPGFLGDSVTLPCYL-QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CSEECCBTTSCEEECCEE-ECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCEEEEecCCCEEEEEEE-ECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            345567789999999998 444433     5999998864321             1111111       1235699999


Q ss_pred             cCCCCCeEEEEEEEc-CCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCccc
Q psy17058        243 IATGDEGKYTCIAEN-SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLE  320 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~-~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~  320 (471)
                      ++.+|+|.|+|.+.+ ..+..+..+.|.+...|.+...+. ...+..|+.+.+.|.+. +.|.+.+.|++++..+.....
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~-~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~  164 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ  164 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEEC-CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEE
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceeccc-ceEeecCceEEEEEEccCccCCcEEEeecCCccccccce
Confidence            999999999998864 455667778888888887665433 34567788899999875 689999999999887653221


Q ss_pred             cc-----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE--EEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCC
Q psy17058        321 RD-----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV--ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEE  393 (471)
Q Consensus       321 ~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~  393 (471)
                      ..     .....+.|.|.....+|+|.|+|.|.|..+.....  +.|.|..                             
T Consensus       165 ~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-----------------------------  215 (313)
T 4fqp_A          165 VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-----------------------------  215 (313)
T ss_dssp             EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-----------------------------
T ss_pred             eeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-----------------------------
Confidence            11     11223568999999999999999999988766444  4555544                             


Q ss_pred             CceEEEcCCcceEEeeecCCeeEEcCCe-eeeeCCCeEEEEEEecccCCc-eEEEecCCCCCCCceEEecCeEEECCCC
Q psy17058        394 GEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGATPI-SIRWQPLQGYFPSHVVEYNGELRLGPHK  470 (471)
Q Consensus       394 ~~~~~~~~~~~~y~c~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~l~i~~~~  470 (471)
                                        +|.+.+.+.. ..+.+|+.+.|.|.+.|+|.| .|+|+|||.+|.......+++|.|.+++
T Consensus       216 ------------------~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~  276 (313)
T 4fqp_A          216 ------------------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVD  276 (313)
T ss_dssp             ------------------EEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCS
T ss_pred             ------------------CCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCC
Confidence                              4677655444 566778999999999999998 7999999999999888889999999876

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.4e-26  Score=212.85  Aligned_cols=232  Identities=15%  Similarity=0.184  Sum_probs=177.1

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      .+|.+.. ......+.+|+.++|.|.+ .+    .+.|++++..+     ......++.|.|.+++.+|+|.|+|.+.| 
T Consensus        11 ~~P~i~~-~~~~~~v~~G~~v~l~C~~-~~----~i~W~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-   78 (290)
T 2o26_X           11 SPPSIHP-AQSELIVEAGDTLSLTCID-PD----FVRWTFKTYFN-----EMVENKKNEWIQEKAEATRTGTYTCSNSN-   78 (290)
T ss_dssp             -CCEESS-CSSEEEEETTSCEEEEEEC-TT----EEEEEEECSSS-----CEEEECSSEEEETTCCGGGCEEEEEEESS-
T ss_pred             CCCEEeC-CCCeEEEcCCCcEEEEECC-CC----cEEEecCCcce-----eeecCCCceEEEeccCHHhCeEEEEEeeC-
Confidence            4455543 3445678899999999998 44    89999999875     12223357899999999999999999998 


Q ss_pred             CCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCC-CeEEE-EeCCccCCCcccccccCceeEEEEeecC
Q psy17058        259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSW-VKYIAPFDRNLERDELTSRAVYTIASVR  336 (471)
Q Consensus       259 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~i~W-~~~~~~~~~~~~~~~~~~~~~l~i~~~~  336 (471)
                       +. ...+.|.|..+|.+... .....+.+|+.+.|.|.+.+ |. +.+.| ++++..+..... ........|.|.+++
T Consensus        79 -g~-~~~~~l~V~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~-~~~~~~~~L~i~~v~  153 (290)
T 2o26_X           79 -GL-TSSIYVFVRDPAKLFLV-GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT-FVPNPKAGITIKNVK  153 (290)
T ss_dssp             -SC-EEEEEEEEECSSCCBCC-CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE-EEEETTTEEEEESCC
T ss_pred             -Cc-cEEEEEEEeCCCccccc-ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc-eeeCCCCCEEEeccc
Confidence             33 77788999888776643 34578889999999999995 77 89999 567777654322 122334589999999


Q ss_pred             CCCCe-EEEEEEEcCCCceE-EEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCe
Q psy17058        337 ESDAG-QYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR  414 (471)
Q Consensus       337 ~~d~G-~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~  414 (471)
                      .+|+| .|+|.|.|..+... ..+.|.|...+                                           ..+|.
T Consensus       154 ~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~-------------------------------------------~~~P~  190 (290)
T 2o26_X          154 RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI-------------------------------------------KAIPV  190 (290)
T ss_dssp             GGGTTCEEEEEEEETTEEEECCCEEEEEECCC-------------------------------------------CSCCE
T ss_pred             HHHCCCEEEEEEEECCceEEeEEEEEEEEeCC-------------------------------------------CCCCc
Confidence            99999 99999999865533 35778877432                                           13688


Q ss_pred             eEEcCCeeeeeCCCeEEEEEEecccCCce-EEEecCCCCC----CCc---------eEEecCeEEECCCC
Q psy17058        415 ITLRPVRQTVKPGDIANIRCSAIGATPIS-IRWQPLQGYF----PSH---------VVEYNGELRLGPHK  470 (471)
Q Consensus       415 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~l----~~~---------~~~~~~~l~i~~~~  470 (471)
                      |...+....+.+|+.+.|.|.+.|.|.|. ++|+|||..+    ...         .....++|.|.+++
T Consensus       191 i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  260 (290)
T 2o26_X          191 VSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSAR  260 (290)
T ss_dssp             EECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCC
T ss_pred             cccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCC
Confidence            88888788999999999999999999996 9999999883    321         11245689998875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.95  E-value=2e-27  Score=232.97  Aligned_cols=258  Identities=14%  Similarity=0.223  Sum_probs=161.2

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCC-CC-CeEEEEeCCCCCCCCC-----------cccCcEEEEcCCCCCCCeEEEE
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SND-PS-ATIKWSKDNQEQLPPN-----------MIAGETLIINGITKADEGVYIC  157 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~-~~v~W~~~~~~~~~~~-----------~~~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      |.+...+....+.+|+.++|.|. .+. |. +.|.|+++ +..+...           ......|.|.+++.+| |.|+|
T Consensus       133 P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C  210 (457)
T 1hzh_H          133 PSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG-ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  210 (457)
T ss_dssp             CEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTT-TBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEE
T ss_pred             CeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeC-CEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEE
Confidence            33433333445679999999999 554 64 79999998 4333210           0012379999999999 99999


Q ss_pred             EEEecCCceeeeeEEEEEee---------------ccCCeeeecCCCcee-EEcCCeEEEEEEccCCCCC----CeEEEE
Q psy17058        158 SIQNAQGNVFQDYASIQVDK---------------REMPRIRIHPNASQT-FIVGDRADIQCVLEAGEPS----PTQTWI  217 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~v~~---------------~~~p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~p~----~~v~W~  217 (471)
                      .|.|..+. ......+.+..               ..+|.+.+.++.... +.+|+.++|.|.+ .+.|+    ..++|+
T Consensus       211 ~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~-~g~~p~p~~~~i~W~  288 (457)
T 1hzh_H          211 NVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWY  288 (457)
T ss_dssp             EEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE-ECCCTTCCCCEEEEE
T ss_pred             EEEeCCCC-cceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE-EcccCCCCceEEEEE
Confidence            99997665 33333333221               113454333333222 5679999999999 45543    399999


Q ss_pred             eCCCCCCcCCC-ceEEeeeceEEEec---cCCCC---CeEEEEEEEcCCCceEEEEEEE----EEeCCceeeCCCccEEe
Q psy17058        218 RPDNDGKFGPD-VEVYQELGVLRFNN---IATGD---EGKYTCIAENSAGKEVMNAYIH----VLTLPAVTITPSEYVSV  286 (471)
Q Consensus       218 ~~~~~~~~~~~-~~~~~~~~~l~i~~---~~~~d---~G~Y~C~~~~~~~~~~~~~~l~----V~~~p~~~~~~~~~~~~  286 (471)
                      |++..+..... ......++.+.+..   +...|   +|.|+|.|.|..+.......+.    +..+|.+.+.+.....+
T Consensus       289 k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~  368 (457)
T 1hzh_H          289 VDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL  368 (457)
T ss_dssp             ETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGG
T ss_pred             eCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCcccc
Confidence            99876432211 11111133344332   23444   9999999998755543333332    35677776665433334


Q ss_pred             cCCCcEEEEEEEeecCCC--eEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        287 RPGEPLTLECEATGRPMP--TVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..|+ +.|.|.+.|.+++  .+.|+++|..+.......       .....+.|.|.....+|.|.|+|.|.|.....
T Consensus       369 ~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          369 TKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             GSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             CCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            5566 9999999996443  899999998875321100       01122456666666688999999999986544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=2.1e-28  Score=238.38  Aligned_cols=307  Identities=12%  Similarity=0.168  Sum_probs=199.7

Q ss_pred             eccceEEEEecCcEEEEEEeeeC---CccEEEeccc--hh-----------------------h-----------h----
Q psy17058         42 AENHEVTVYEGGDAELKCNTYYA---PGRWMWLNFY--SF-----------------------L-----------S----   78 (471)
Q Consensus        42 ~~~~~~~v~~g~~~~l~C~~~~~---~~~~~w~~~~--~~-----------------------~-----------~----   78 (471)
                      ..+..+.+.+|+.++|.|.+...   ...+.|++..  ..                       +           .    
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            34567899999999999999853   4568887531  00                       0           0    


Q ss_pred             -------heeeeeeeec----------------CCCCcEEEcCCceeecCCCcEEEEee-CCC-CCC-eEEEEeCCCCCC
Q psy17058         79 -------LIIICLAYLS----------------PQANEVQVTPRQQSAPEGSQVTIECK-SND-PSA-TIKWSKDNQEQL  132 (471)
Q Consensus        79 -------~~~~c~~~~~----------------~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~-~v~W~~~~~~~~  132 (471)
                             ..|.|.+...                ..+|.+...+....+.+|+.++|.|. .+. |.+ .+.|+++ +..+
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~-~~~~  162 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG-SLSS  162 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT-TBCS
T ss_pred             CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC-CcCC
Confidence                   1256776421                12344544443445689999999999 554 665 9999999 4332


Q ss_pred             C----------CCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe----------eccCCeeeecCCCcee
Q psy17058        133 P----------PNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD----------KREMPRIRIHPNASQT  192 (471)
Q Consensus       133 ~----------~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~----------~~~~p~~~~~~~~~~~  192 (471)
                      .          ......+.|.|.+++.+| |.|+|.|.|..+. ......+.+.          ....|.+.+.++....
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~  240 (434)
T 1igy_B          163 GVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASS-TKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKD  240 (434)
T ss_dssp             SEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTT-CCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHH
T ss_pred             CeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCC-ccceeeccCCCCCCccccCCCCcCcEEEEeCCChHH
Confidence            1          001123579999999999 9999999998876 3333333221          0111444444433222


Q ss_pred             -EEcCCeEEEEEEccCCCC----CCeEEEEeCCCCCCcCCCce-------EEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        193 -FIVGDRADIQCVLEAGEP----SPTQTWIRPDNDGKFGPDVE-------VYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       193 -v~~g~~~~L~C~~~~~~p----~~~v~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                       +.+|+.++|.|.+. +.+    .+.++|+|++..+.......       .....+.|.|.++..+|+|.|+|.|.|..+
T Consensus       241 ~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          241 TLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             HHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             hcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence             67899999999994 552    45899999987653221110       011134699999999999999999999877


Q ss_pred             ceE--EEEEE--EEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCCCccccc-------ccCce
Q psy17058        261 KEV--MNAYI--HVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFDRNLERD-------ELTSR  327 (471)
Q Consensus       261 ~~~--~~~~l--~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~~~~-------~~~~~  327 (471)
                      ...  ..+.+  .+..+|.+.+.+.... ...|+.+.|.|.+.|. |++ .+.|+++|..+.......       .....
T Consensus       320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~  398 (434)
T 1igy_B          320 PAPIEKTISKTKGKPRAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVY  398 (434)
T ss_dssp             SSCCCCCCCCCCSCCBCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEE
T ss_pred             CCceeEEEeccCCCCcCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEE
Confidence            542  22222  3445677665543322 3457789999999985 433 899999999875321110       11123


Q ss_pred             eEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        328 AVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       328 ~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +.|.|.....+|+|.|+|.|.|....
T Consensus       399 s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          399 SKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEEECchhccCCCEEEEEEEcCCCC
Confidence            46777777788999999999998654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.95  E-value=5.9e-28  Score=225.60  Aligned_cols=260  Identities=13%  Similarity=0.195  Sum_probs=171.5

Q ss_pred             CCCCcEEEcCCceeecCC--CcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc------------cCcEEEEcCCCCCC
Q psy17058         89 PQANEVQVTPRQQSAPEG--SQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI------------AGETLIINGITKAD  151 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G--~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~------------~~~~L~i~~v~~~D  151 (471)
                      ..+|.+.+.+.......|  +++.|.|. .+ .| .+.|.|+|+ +..+.....            ..+.|.|.++..+|
T Consensus         5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d   83 (323)
T 2wqr_A            5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLED-GQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS   83 (323)
T ss_dssp             CCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEET-TEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEEC-CEEcccceecCCcCccCCcEEEEEEEEEcHHHcCC
Confidence            356777776554444455  69999999 44 34 479999999 655543211            12357788888889


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEE---eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC---eEEEEeCCCCCCc
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQV---DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP---TQTWIRPDNDGKF  225 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v---~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~---~v~W~~~~~~~~~  225 (471)
                      +|.|+|.|.|..+. ..  ..+.+   .....|.+.+.++....+.+|+.++|.|.+....|.+   .++|+++++....
T Consensus        84 ~g~Y~C~a~n~~~~-~~--~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~  160 (323)
T 2wqr_A           84 DRTYTCQVTYQGHT-FE--DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVN  160 (323)
T ss_dssp             TCCEEEEEEETTEE-EE--EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCC
T ss_pred             CCcEEEEEEeCCCC-cc--eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccc
Confidence            99999999997654 22  22221   1122355555555444577899999999984445555   9999997643221


Q ss_pred             C-CCce------EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE----EEeCCceeeCCCccEEecCCCcEEE
Q psy17058        226 G-PDVE------VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH----VLTLPAVTITPSEYVSVRPGEPLTL  294 (471)
Q Consensus       226 ~-~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~----V~~~p~~~~~~~~~~~~~~g~~v~l  294 (471)
                      . ....      .....+.|.|.+++.+|+|.|+|.+.|..........+.    +..+|.+.+.+... ....|+.+.|
T Consensus       161 ~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~g~~~~l  239 (323)
T 2wqr_A          161 HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPE-WPGSRDKRTL  239 (323)
T ss_dssp             CCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCC-CTTCTTEEEE
T ss_pred             cccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCCh-HHhcCCcEEE
Confidence            1 1110      011245799999999999999999999764433333332    22456655543221 1234999999


Q ss_pred             EEEEee-cCCC-eEEEEeCCccCCCcccc---------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        295 ECEATG-RPMP-TVSWVKYIAPFDRNLER---------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       295 ~C~~~g-~p~~-~i~W~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      .|.+.| .|.+ .+.|+++|..+......         ......+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       240 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          240 ACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            999998 4544 89999999887543110         01123467999999999999999999999877

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=1.1e-27  Score=222.89  Aligned_cols=224  Identities=17%  Similarity=0.216  Sum_probs=168.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCc--CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      ....+.+|+.++|.|.+ .+.| .+.++|+|++..+..  .....+...++.|.|.+++.+|+|.|+|.+.|..+.....
T Consensus        13 ~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           13 IILVSSANEIDVRPCPL-NPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCEEETTSCCCCBCCC-CSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             eEEEEcCCCcEEEEeec-cCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            34578899999999999 5555 789999999875432  2222333335689999999999999999999988877766


Q ss_pred             EEEEEEe-CCceeeCCC--ccEEecCCCcEEEEEEE------eecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC
Q psy17058        266 AYIHVLT-LPAVTITPS--EYVSVRPGEPLTLECEA------TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR  336 (471)
Q Consensus       266 ~~l~V~~-~p~~~~~~~--~~~~~~~g~~v~l~C~~------~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~  336 (471)
                      +.+.+.. +|.+...+.  ....+..|+++.|.|.+      .|+|.+.+.|++++..+..... ........|.|.+++
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~-~~~~~~~~L~i~~v~  170 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-HFSGVKDRLIVMNVA  170 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS-SEEEETTEEEESSCC
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc-eEeecCceEEEEece
Confidence            6666553 343322221  12467899999999998      7899999999999988754322 123345689999999


Q ss_pred             CCCCeEEEEEEE-cCCCce---EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecC
Q psy17058        337 ESDAGQYKCIGK-NSAGTE---EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP  412 (471)
Q Consensus       337 ~~d~G~Y~C~a~-n~~g~~---~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~  412 (471)
                      .+|+|.|+|.|. |..|..   ...+.+.+.....                                          ..+
T Consensus       171 ~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~------------------------------------------~~~  208 (315)
T 1itb_B          171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK------------------------------------------PTR  208 (315)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC------------------------------------------CCC
T ss_pred             ehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCC------------------------------------------CCC
Confidence            999999999999 788876   4445554443210                                          125


Q ss_pred             CeeEEcCCe-eeeeCCCeEEEEEEecccCCceEEEecCCCCCCCc
Q psy17058        413 PRITLRPVR-QTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH  456 (471)
Q Consensus       413 p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~  456 (471)
                      |.|...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+|||.+|..+
T Consensus       209 P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~  253 (315)
T 1itb_B          209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED  253 (315)
T ss_dssp             CEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTT
T ss_pred             CEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcc
Confidence            778766654 57899999999999999999999999999998764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=8.8e-26  Score=204.12  Aligned_cols=223  Identities=16%  Similarity=0.234  Sum_probs=173.0

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      |.+.+.+. ...+.+|+.++|.|.+ .+.|.+ .+.|++++..+...        ...|.|.+++.+|+|.|+|.+.|..
T Consensus         2 P~i~~~p~-~~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~~~   71 (262)
T 3rjd_A            2 AVITLQPP-WVSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQTS--------TPSYRITSASVNDSGEYRCQRGLSG   71 (262)
T ss_dssp             CEEEESSC-CSEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEESSSC
T ss_pred             CeEecCCC-cEEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeecc--------CCeEEEecCCcccCeEEEEEEecCC
Confidence            45555554 3578899999999999 666766 99999988764322        5679999999999999999998765


Q ss_pred             CceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCC
Q psy17058        260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES  338 (471)
Q Consensus       260 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  338 (471)
                      +.  ..+.|.|..++... .+. ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..      ......|.|.+++.+
T Consensus        72 ~s--~~~~l~v~~~~~~~-~~~-~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~------~~~~~~l~i~~~~~~  141 (262)
T 3rjd_A           72 RS--DPIQLEIHRGWLLL-QVS-SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF------FHWNSNLTILKTNIS  141 (262)
T ss_dssp             CC--CCEEEEEECSSEEE-EES-CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEECCCEEESSCCGG
T ss_pred             cc--ccEEEEEeccceEe-cCC-CeEEecCCeEEEEEEccCCCCCceEEEEECCccccc------cCCCCeEEEEECChh
Confidence            44  35667777665433 322 3467899999999999 6678889999999877632      223567999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEc
Q psy17058        339 DAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR  418 (471)
Q Consensus       339 d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~  418 (471)
                      |+|.|+|.|.|..+..+..+.|.|...+                                            .+|.+...
T Consensus       142 d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--------------------------------------------~~p~~~~~  177 (262)
T 3rjd_A          142 HNGTYHCSGMGKHRYTSAGISVTVKELF--------------------------------------------PAPVLNAS  177 (262)
T ss_dssp             GCEEEEEEEESSSEEEEECEEEEEECSS--------------------------------------------CCCEEEES
T ss_pred             hCEEEEEEEeCCCCccccceEEEeccCC--------------------------------------------CCCeEeec
Confidence            9999999999999888888899998752                                            24677766


Q ss_pred             CCeeeeeCCCeEEEEEEecccCC-c----eEEEecCCCCCCCceEEecCeEEECCCC
Q psy17058        419 PVRQTVKPGDIANIRCSAIGATP-I----SIRWQPLQGYFPSHVVEYNGELRLGPHK  470 (471)
Q Consensus       419 ~~~~~~~~g~~~~l~C~~~g~p~-~----~v~W~~~g~~l~~~~~~~~~~l~i~~~~  470 (471)
                      + ...+.+|+.+.|.|.+.+.|. +    .+.|++||..+...  ...++|.|.+++
T Consensus       178 ~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--~~~~~L~i~~v~  231 (262)
T 3rjd_A          178 V-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--NTSSEYQILTAR  231 (262)
T ss_dssp             S-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--ESCCEEEESSCC
T ss_pred             C-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--CCCceEEEEEec
Confidence            5 667889999999999999986 4    37899999987633  245678887764

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=216.09  Aligned_cols=222  Identities=17%  Similarity=0.290  Sum_probs=158.5

Q ss_pred             cCCCceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCCc---------CCCceEE-------eeeceEEEeccCCCCC
Q psy17058        186 HPNASQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGKF---------GPDVEVY-------QELGVLRFNNIATGDE  248 (471)
Q Consensus       186 ~~~~~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~~---------~~~~~~~-------~~~~~l~i~~~~~~d~  248 (471)
                      .++....+.+|+.++|.|.+ .+. |.+.+.|+|++.....         ..++...       .....|.|.+++.+|+
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~-~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~   86 (327)
T 2wng_A            8 QPDKSVSVAAGESAILHCTV-TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADA   86 (327)
T ss_dssp             CCCSEEEEETTSCEEECCEE-SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGC
T ss_pred             cCCCceEEecCCcEEEEEEc-cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccC
Confidence            34456678999999999999 554 8889999998865221         0122221       2245799999999999


Q ss_pred             eEEEEEEEcCCCce-----EEEEEEEEEeCCcee-eCCCccEEecCCCcEEEEEEEeecCCC--eEEEEeCCccCCCccc
Q psy17058        249 GKYTCIAENSAGKE-----VMNAYIHVLTLPAVT-ITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFDRNLE  320 (471)
Q Consensus       249 G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~-~~~~~~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~~  320 (471)
                      |.|+|.+.|..+..     ...+.|.|..+|... +... ...+.+|+.+.|.|.+.|.|++  .+.|++++..+.....
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~  165 (327)
T 2wng_A           87 GTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT  165 (327)
T ss_dssp             EEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEE
T ss_pred             eEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccc
Confidence            99999999976541     134678887665432 2221 3467899999999999998766  8999999988764321


Q ss_pred             c-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCce---EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCC
Q psy17058        321 R-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE---EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE  390 (471)
Q Consensus       321 ~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~  390 (471)
                      .       ......+.|.|.....+|.|.|+|.|.|..+..   ..+..+.+...                         
T Consensus       166 ~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~-------------------------  220 (327)
T 2wng_A          166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR-------------------------  220 (327)
T ss_dssp             EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBC-------------------------
T ss_pred             ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccC-------------------------
Confidence            0       112234567888777778899999999998763   33444432221                         


Q ss_pred             CCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCC-c-eEEEecCCCCCCCc
Q psy17058        391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP-I-SIRWQPLQGYFPSH  456 (471)
Q Consensus       391 ~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~-~v~W~~~g~~l~~~  456 (471)
                                          .+|.+...+..  +.+|+.+.|.|.+.|.|+ + .|+|+|||++|..+
T Consensus       221 --------------------~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  266 (327)
T 2wng_A          221 --------------------VPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE  266 (327)
T ss_dssp             --------------------BCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEE
T ss_pred             --------------------CCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCc
Confidence                                35787766544  789999999999999644 4 89999999988653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=2.2e-26  Score=216.91  Aligned_cols=255  Identities=17%  Similarity=0.261  Sum_probs=166.7

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      .|..+.+.+|++++|.|. .+.  +.+.+.|+|++ +..+                   ..+..       ...+|+|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            355778999999999999 544  46789999973 2111                   11111       124899999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCC
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDG  223 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~  223 (471)
                      ++.+|+|.|+|.+.+..+. ......|.|..  ..+|.+...++. ..+.+|+.++|.|.+....|. +.++|++++..+
T Consensus        86 v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  163 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS  163 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred             CCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence            9999999999999885433 33445666652  234555544332 235689999999999444465 799999998753


Q ss_pred             CcCCCc------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE------------------------EEeC
Q psy17058        224 KFGPDV------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH------------------------VLTL  273 (471)
Q Consensus       224 ~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~------------------------V~~~  273 (471)
                      ......      ......+.|.|..+..+| |.|+|.+.|..+.......+.                        +..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~  242 (344)
T 1za6_B          164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE  242 (344)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred             ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence            211000      011123478999988878 999999999877543332221                        1235


Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeec-C-CCeEEEEeCCccCCCcccc----c---ccCceeEEEEeecCCCCCeEEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGR-P-MPTVSWVKYIAPFDRNLER----D---ELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~----~---~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      |.+.+.+.... ...|..+.|.|.+.|. | .+.+.|+++|..+......    .   .....+.|.|.....+|+|.|+
T Consensus       243 P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt  321 (344)
T 1za6_B          243 PQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS  321 (344)
T ss_dssp             CEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEE
T ss_pred             CEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEE
Confidence            55554433222 2346679999999995 4 3589999999887632110    0   1112345667666677899999


Q ss_pred             EEEEcCCCceE
Q psy17058        345 CIGKNSAGTEE  355 (471)
Q Consensus       345 C~a~n~~g~~~  355 (471)
                      |.|.|......
T Consensus       322 C~a~~~~l~~~  332 (344)
T 1za6_B          322 CSVMHEALHNH  332 (344)
T ss_dssp             EEEECTTSTTS
T ss_pred             EEEEcCCCCCC
Confidence            99999876543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=3.5e-25  Score=212.33  Aligned_cols=264  Identities=14%  Similarity=0.253  Sum_probs=188.6

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCCCC-------Ccc-----cCcEEEEcCCCCCCCeEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQLPP-------NMI-----AGETLIINGITKADEGVYI  156 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~~~-------~~~-----~~~~L~i~~v~~~D~G~Y~  156 (471)
                      +|.|.. +.+..+.+|+++.|.|. .+.|.+.+.|+++. +..+..       +..     ..+.|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            356665 56778899999999999 88999999999982 222221       111     3468999999999999999


Q ss_pred             EEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEee
Q psy17058        157 CSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQE  234 (471)
Q Consensus       157 C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~  234 (471)
                      |.|.|..|. ....+.|.|.  .+|.+... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  ++.+...
T Consensus        80 C~a~n~~g~-~~~~~~l~V~--~~P~~~~~-~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~  154 (389)
T 2jll_A           80 CEAASRIGG-HQKSMYLDIE--YAPKFISN-QTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKTYST  154 (389)
T ss_dssp             EEEECSSCE-EEEEEEEEEE--EEEEECCS-CCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEEEEC
T ss_pred             EEEEeCCCC-cceEEEEEEE--eCCEEecC-cceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEEecc
Confidence            999998887 5555555554  55655433 333456799999999999 788899999999988765543  3333332


Q ss_pred             --eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee----cCCC--eE
Q psy17058        235 --LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG----RPMP--TV  306 (471)
Q Consensus       235 --~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g----~p~~--~i  306 (471)
                        ...|.|.++...|.|.|+|.|.|..|.....+.|.+...|......  ......+..+.|.|....    .|..  .+
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~--~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v  232 (389)
T 2jll_A          155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV--KIIELSQTTAKVSFNKPDSHGGVPIHHYQV  232 (389)
T ss_dssp             SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEE--EEEEECSSCEEEEEECCSCCTTSCEEEEEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcce--EEeeccCCEEEEEEeCCCCCCCcceEEEEE
Confidence              3469999999999999999999999988877878776555322111  112334678999997422    2322  47


Q ss_pred             EEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        307 SWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       307 ~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      .|.+++.......  ........+.|.++...+.+.|+|.|.|..|....+..+.+..
T Consensus       233 ~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t  288 (389)
T 2jll_A          233 DVKEVASEIWKIV--RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT  288 (389)
T ss_dssp             EEEETTCSCCEEE--ECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             EEEECCCcccEEe--eccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence            7888765432211  1223457899999999999999999999999765444444443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=6.7e-26  Score=210.19  Aligned_cols=234  Identities=19%  Similarity=0.352  Sum_probs=169.4

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-----------------CCCceEE---eeeceEEEeccCCCCCe
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-----------------GPDVEVY---QELGVLRFNNIATGDEG  249 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~---~~~~~l~i~~~~~~d~G  249 (471)
                      ..++.+|++++|.|.+..+.+.+.++|+|++.....                 ..+..+.   ....+|.|.+++.+|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            456889999999999854555568999997654211                 0111111   12357999999999999


Q ss_pred             EEEEEEEcC-CCceEEEEEEEEEeCCceeeC-CCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccc---cc
Q psy17058        250 KYTCIAENS-AGKEVMNAYIHVLTLPAVTIT-PSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLER---DE  323 (471)
Q Consensus       250 ~Y~C~~~~~-~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~---~~  323 (471)
                      .|+|.+.|. .+..+..+.+.+...|.+... .........|+.+.|.|.+ .|.|.+.+.|++++..+......   ..
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~  167 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNET  167 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSC
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeec
Confidence            999999886 445667777888777665432 2233455678899999985 57999999999999887643221   12


Q ss_pred             cCceeEEEEeecCCCCCeEEEEEEEcCCCceEE--EEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcC
Q psy17058        324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVG  401 (471)
Q Consensus       324 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  401 (471)
                      ....+.|.|..+..+|+|.|+|.|.|..|....  ++.|.|..                                     
T Consensus       168 ~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------------------------------------  210 (308)
T 4fom_A          168 ATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-------------------------------------  210 (308)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-------------------------------------
T ss_pred             ccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-------------------------------------
Confidence            223457999999999999999999999876644  44555544                                     


Q ss_pred             CcceEEeeecCCeeEEcCCe-eeeeCCCeEEEEEEecccCCc-eEEEecCCCCCCCceEEecCeE-EECCCC
Q psy17058        402 SNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGATPI-SIRWQPLQGYFPSHVVEYNGEL-RLGPHK  470 (471)
Q Consensus       402 ~~~~y~c~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~l-~i~~~~  470 (471)
                                +|.+...+.. ..+..|+.+.|.|.+.|.|+| .++|+|||..+.......++++ .|.+++
T Consensus       211 ----------~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~  272 (308)
T 4fom_A          211 ----------APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLT  272 (308)
T ss_dssp             ----------EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCC
T ss_pred             ----------CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCC
Confidence                      4566544443 567788999999999999998 7999999999987766655554 455554

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.94  E-value=1.8e-25  Score=208.05  Aligned_cols=243  Identities=17%  Similarity=0.239  Sum_probs=170.8

Q ss_pred             EEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEE
Q psy17058        173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       173 l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  252 (471)
                      ++.....+|.+...+.  ..+.+|+.++|.|.+ .+. .+.+.|+|++..+...  .........|.|.+++.+|+|.|+
T Consensus        17 ~~~~~~~~P~i~~~p~--~~v~~G~~v~L~C~~-~~~-~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           17 SHMGGQDKPFLSAWPS--AVVPRGGHVTLRCHY-RHR-FNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             -------CCEEEEESC--SEEETTSCEEEEEEB-TTB-CCSEEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEE
T ss_pred             cccCCCCCCEeeccCC--CccCCCCCEEEEEEc-cCC-CceEEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEE
Confidence            3444456677777765  368899999999999 444 6789999998874321  111223678999999999999999


Q ss_pred             EEEEcCC-----CceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---c
Q psy17058        253 CIAENSA-----GKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---R  321 (471)
Q Consensus       253 C~~~~~~-----~~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~  321 (471)
                      |.+.+..     +..+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+. .+.+.+.|++++..+.....   .
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~  167 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG--PLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI  167 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESC--SEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCC--CccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee
Confidence            9998632     2234556777764   344544443  2478999999999995 56679999999987743211   1


Q ss_pred             cccCceeEEEEeecCCCCCeEEEEEEEcCCCce-----EEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCce
Q psy17058        322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-----EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEY  396 (471)
Q Consensus       322 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  396 (471)
                      ........|.|.+++.+|+|.|+|.|.|..|..     +..+.|.|...+                              
T Consensus       168 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~------------------------------  217 (316)
T 3vh8_G          168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY------------------------------  217 (316)
T ss_dssp             ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS------------------------------
T ss_pred             cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC------------------------------
Confidence            122356789999999999999999999998742     455677776542                              


Q ss_pred             EEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE-------ecCeEEECCC
Q psy17058        397 VYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE-------YNGELRLGPH  469 (471)
Q Consensus       397 ~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~-------~~~~l~i~~~  469 (471)
                                    .+|.+...+. ..+.+|+.+.|.|.+. .|.+.+.|+|+|..+......       ..++|.|.++
T Consensus       218 --------------~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v  281 (316)
T 3vh8_G          218 --------------EKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA  281 (316)
T ss_dssp             --------------CCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC--
T ss_pred             --------------CCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCc
Confidence                          2577777664 3678999999999997 577899999999988754321       2267888776


Q ss_pred             C
Q psy17058        470 K  470 (471)
Q Consensus       470 ~  470 (471)
                      +
T Consensus       282 ~  282 (316)
T 3vh8_G          282 T  282 (316)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.2e-25  Score=204.99  Aligned_cols=238  Identities=19%  Similarity=0.202  Sum_probs=173.1

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.    +.|++++...   .........+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~~-~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSV-PELVVKPGATVTLRCVG-NGS----VEWDGPPSPH---WTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCC-SSCEECTTCCEEEEEEC-SSC----CCBCCCCCSS---CEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCC-CeEEEcCCCcEEEEEcC-CCc----eEEccCCCCc---eEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            345555444 45578899999999998 442    9999765431   11111112458999999999999999999998


Q ss_pred             CCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCC--CeEEEEeCC-ccCCCcccccccCceeEEEEeec
Q psy17058        259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM--PTVSWVKYI-APFDRNLERDELTSRAVYTIASV  335 (471)
Q Consensus       259 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~-~~~~~~~~~~~~~~~~~l~i~~~  335 (471)
                      .+..+..+.|.|..+|...........+.+|+.+.|.|.+.+ |.  +.+.|++++ ..+..... ........|.|.++
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~~  151 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTN-YSFSPWHGFTIHRA  151 (292)
T ss_dssp             ---CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCC-EECCSSSCCEETTC
T ss_pred             CCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCc-ccccCCceEEECCC
Confidence            877788889999887765444444678899999999999997 44  689999984 44433222 22233445999999


Q ss_pred             CCCCCeEEEEEEEcCCCceE-EEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCe
Q psy17058        336 RESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR  414 (471)
Q Consensus       336 ~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~  414 (471)
                      +.+|+|.|+|.|.|..|... ..+.|.|...+                                           ..+|.
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~-------------------------------------------~~~p~  188 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVI-------------------------------------------PGPPA  188 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEECCC-------------------------------------------CSSCE
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC-------------------------------------------CCCCe
Confidence            99999999999999888664 47888887632                                           12588


Q ss_pred             eEEcCCeeeeeCCCeEEEEEEecccCC-ceEEEecCCCCCCCceE--E------ecCeEEECCCC
Q psy17058        415 ITLRPVRQTVKPGDIANIRCSAIGATP-ISIRWQPLQGYFPSHVV--E------YNGELRLGPHK  470 (471)
Q Consensus       415 ~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~g~~l~~~~~--~------~~~~l~i~~~~  470 (471)
                      +...+....+.+|+.+.|.|.+.+.|+ +.+.|+++|..+.....  .      ..++|.|.+++
T Consensus       189 i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  253 (292)
T 4dkd_C          189 LTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVD  253 (292)
T ss_dssp             EEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCC
T ss_pred             EEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccC
Confidence            888888888889999999999998776 57999999987753322  1      23578888775

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.93  E-value=4.4e-25  Score=199.99  Aligned_cols=198  Identities=19%  Similarity=0.230  Sum_probs=153.1

Q ss_pred             eEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCCceEEeeeceEEEecc---CCCCCe--EEEEEEEcCCCceEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNI---ATGDEG--KYTCIAENSAGKEVM  264 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G--~Y~C~~~~~~~~~~~  264 (471)
                      .+.+|+.++|.|.+....|.+  .++|++++..+..    .+...+..+.+..+   +..|.|  .|+|.+.|..+....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~   89 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET   89 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEE
Confidence            678999999999994437766  9999999876433    23333455666655   777887  499999999888888


Q ss_pred             EEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEE
Q psy17058        265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       265 ~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.|.|...|...+.+. ...+.+|+.+.|.|.+.  |.+.+.|  +|..+..      ......|.|..+..+|+|.|+
T Consensus        90 ~~~l~V~~~p~p~~~~~-~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~------~~~~~~l~i~~~~~~~~g~Y~  158 (265)
T 2oz4_A           90 LQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP------LGPRAQLLLKATPEDNGRSFS  158 (265)
T ss_dssp             EEEEEEECCCCCEEEES-CSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC------CSSEECCEEECCGGGTTEEEE
T ss_pred             EEEEEEeCCCCceeecC-CceecCCCcEEEEEEcc--CCCEEEE--CCEEccC------CCCcEEEEEccccccCCceEE
Confidence            89999987443333322 34678899999999998  8899999  7776622      234567889999999999999


Q ss_pred             EEEEcCC-CceE---EEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEc--
Q psy17058        345 CIGKNSA-GTEE---KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR--  418 (471)
Q Consensus       345 C~a~n~~-g~~~---~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~--  418 (471)
                      |.|.|.. |...   ..+.|.|..+|                                               .+...  
T Consensus       159 C~a~n~~~g~~~~~s~~~~l~V~~~p-----------------------------------------------~~~~~~~  191 (265)
T 2oz4_A          159 CSATLEVAGQLIHKNQTRELRVLYGP-----------------------------------------------RLDERDC  191 (265)
T ss_dssp             EEEEEECSSSEEEEEEEEEEEEEEEE-----------------------------------------------ECCGGGS
T ss_pred             EEEEcCCCCCcccccccEEEEEEeCC-----------------------------------------------ccccccC
Confidence            9998644 7665   67888887753                                               33332  


Q ss_pred             CCeeeeeCCCeEEEEEEecccCCceEEEecCCC
Q psy17058        419 PVRQTVKPGDIANIRCSAIGATPISIRWQPLQG  451 (471)
Q Consensus       419 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~  451 (471)
                      +.+..+.+|+.+.|.|.+.|+|.|.++|+|+|.
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            446788999999999999999999999999998

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=6.9e-23  Score=203.08  Aligned_cols=253  Identities=16%  Similarity=0.231  Sum_probs=161.8

Q ss_pred             CCCcEEEEee-CCC-CCC-eEEEEeCCCCCC-C--CCc-c------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058        105 EGSQVTIECK-SND-PSA-TIKWSKDNQEQL-P--PNM-I------AGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus       105 ~G~~v~l~C~-~~~-p~~-~v~W~~~~~~~~-~--~~~-~------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      +|+.+.|.|. .+. |.+ .+.|++++.... .  ... .      ..+.|.|.....+ .|.|+|.+.|..+. .....
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~-~~~~~  226 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASK-SKKEI  226 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCC-ceEEE
Confidence            4689999999 444 664 899999733211 0  000 0      2245888888777 99999999998776 22222


Q ss_pred             -----------EEEEee--------------------------------------------------ccCCeeeecCCCc
Q psy17058        172 -----------SIQVDK--------------------------------------------------REMPRIRIHPNAS  190 (471)
Q Consensus       172 -----------~l~v~~--------------------------------------------------~~~p~~~~~~~~~  190 (471)
                                 .+.|.+                                                  ..+|.+.+.++..
T Consensus       227 ~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~  306 (512)
T 1zvo_C          227 FRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAV  306 (512)
T ss_pred             ecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCCh
Confidence                       223321                                                  1234444444444


Q ss_pred             eeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC--C-ce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        191 QTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP--D-VE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~--~-~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ..+.+|+.++|.|.+....|. ..++|++++..+....  . ..     .+...+.|.|.....+|.|.|+|.|.|..+.
T Consensus       307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            446689999999999544453 5999999987643110  0 00     0111346899999999999999999998765


Q ss_pred             eEEEEEEEE------EeCCceeeCCCccEEecCCCcEE-EEEEEeecCCC--eEEEEeCCccCCCccccc-----ccC--
Q psy17058        262 EVMNAYIHV------LTLPAVTITPSEYVSVRPGEPLT-LECEATGRPMP--TVSWVKYIAPFDRNLERD-----ELT--  325 (471)
Q Consensus       262 ~~~~~~l~V------~~~p~~~~~~~~~~~~~~g~~v~-l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~-----~~~--  325 (471)
                      .. ...+..      ..+|.+.+.+...    .|+.+. |.|.+.|++++  .+.|+|+|..+.......     ...  
T Consensus       387 ~~-~~~~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~  461 (512)
T 1zvo_C          387 PQ-RLMALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGST  461 (512)
T ss_pred             CC-ceeEEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCC
Confidence            43 222221      2356665554322    799999 99999985443  689999998876432110     111  


Q ss_pred             ---ceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEEEEec
Q psy17058        326 ---SRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEH  364 (471)
Q Consensus       326 ---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~  364 (471)
                         ..+.|.|.....+|.|.|+|.|.|.....  .....|.|..
T Consensus       462 ~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          462 TFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             EEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence               12456777777778999999999987654  4445555544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=194.60  Aligned_cols=186  Identities=20%  Similarity=0.289  Sum_probs=148.2

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEee-e--ceEEEeccCCCCCeEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQE-L--GVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~--~~l~i~~~~~~d~G~Y~C~  254 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+... .++.+... +  ..|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~p-~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEEL-RNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECC-CCEEECTTCCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeecc-cceEEeCCCcEEEEEEE-eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            356665554 45678999999999999 78889999999998775543 23333221 2  3799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEEeCCceeeCC----CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCcee
Q psy17058        255 AENSAGKEVMNAYIHVLTLPAVTITP----SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRA  328 (471)
Q Consensus       255 ~~~~~~~~~~~~~l~V~~~p~~~~~~----~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~  328 (471)
                      +.|..+..+..+.|.|..+|.+....    .....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ........
T Consensus        81 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~  160 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT  160 (305)
T ss_dssp             EEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEE
T ss_pred             EEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCce
Confidence            99998888888889888766553321    1345788999999999999999999999999988764322  12233567


Q ss_pred             EEEEee-cCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        329 VYTIAS-VRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       329 ~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus       161 ~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  199 (305)
T 2nzi_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP  199 (305)
T ss_dssp             EEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             EEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC
Confidence            899999 99999999999999999999999999998876

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.92  E-value=1.2e-22  Score=194.64  Aligned_cols=176  Identities=20%  Similarity=0.393  Sum_probs=143.7

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeC--CCCCCc-----CCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRP--DNDGKF-----GPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      ....+.+|+.++|.|.+ .+.|.+.++|+|+  +..+..     ..++.+..  ..+.|.|.+++.+|+|.|+|.+.|..
T Consensus         8 ~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A            8 KNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI   86 (389)
T ss_dssp             CCEEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             CceEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCC
Confidence            34578899999999999 7899999999999  544322     23444432  24689999999999999999999999


Q ss_pred             CceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeec
Q psy17058        260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASV  335 (471)
Q Consensus       260 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~  335 (471)
                      |..+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+....    ..........|.|.++
T Consensus        87 g~~~~~~~l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~  165 (389)
T 2jll_A           87 GGHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT  165 (389)
T ss_dssp             CEEEEEEEEEEEEEEEECCSC-CEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCC
T ss_pred             CCcceEEEEEEEeCCEEecCc-ceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCC
Confidence            998899999999988876543 33478899999999999999999999999998876432    1122344578999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       336 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ..+|+|.|+|.|.|..|.....+.|.+...|
T Consensus       166 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  196 (389)
T 2jll_A          166 SDNDFGRYNCTATNHIGTRFQEYILALADVP  196 (389)
T ss_dssp             STTSSEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred             ChhhCEEEEEEEEcCCCcEEEEEEEEecCCC
Confidence            9999999999999999999888888887665

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=1.6e-23  Score=180.16  Aligned_cols=181  Identities=22%  Similarity=0.327  Sum_probs=143.2

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEe--eeceEEEeccCCCCCeEEEEEE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQ--ELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      +|.+... +....+.+|+.++|.|.+ .+.|.+.+.|++++..+....  +..+..  ....|.|.+++..|+|.|+|.+
T Consensus         5 ~P~~~~~-~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            5 APTFTQP-LQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEC-CCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEcc-CCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            3444443 345678899999999999 777888999999988765443  333322  2347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEE---eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEE
Q psy17058        256 ENSAGKEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVY  330 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l  330 (471)
                      .|..+.....+.|.|.   .+|.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....  ........+|
T Consensus        83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (194)
T 2a38_A           83 TNGSGQATSTAELLVKAETAPPNFVQRL-QSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSL  161 (194)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEEEEECC-CCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEE
T ss_pred             EcCCceEeEEEEEEEccCCCCCEEEeCC-ccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEE
Confidence            9998888778888887   455555444 356889999999999999999999999999988764322  1122334589


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       331 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       162 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            999999999999999999999999999988874

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=1.6e-23  Score=180.68  Aligned_cols=184  Identities=20%  Similarity=0.282  Sum_probs=145.9

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEee-e--ceEEEeccCCCCCeEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQE-L--GVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~--~~l~i~~~~~~d~G~Y~C~  254 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+... .++.+... +  ..|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~~-~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEEL-RNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECC-CCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcC-CccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            356655544 45678999999999999 68888999999998775543 23333321 2  2899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEEeCCceeeCC----CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCcee
Q psy17058        255 AENSAGKEVMNAYIHVLTLPAVTITP----SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRA  328 (471)
Q Consensus       255 ~~~~~~~~~~~~~l~V~~~p~~~~~~----~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~  328 (471)
                      +.|..+.....+.|.|..+|.+...+    .....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....  ........
T Consensus        81 ~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~  160 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT  160 (197)
T ss_dssp             EEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEE
T ss_pred             EEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCce
Confidence            99998888888899998776654322    1345788999999999999999999999999988753322  12234567


Q ss_pred             EEEEee-cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        329 VYTIAS-VRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       329 ~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      .|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       161 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            999999 999999999999999999999999998863

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=9.8e-24  Score=181.48  Aligned_cols=178  Identities=25%  Similarity=0.325  Sum_probs=142.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc----c-----cCcEEEEcCCCCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM----I-----AGETLIINGITKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~----~-----~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ..+|.+...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+....    .     ....|.|.+++.+|+|.|+|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEES-SSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEEC-CEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            45788888999999999999999999 7778889999998 55554332    1     345899999999999999999


Q ss_pred             EEecCCceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec-
Q psy17058        159 IQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-  236 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-  236 (471)
                      +.+..+. ......+.|... .+|.+... .....+.+|+.++|.|.+ .+.|.+.+.|++++..+....++.+...+. 
T Consensus        82 ~~n~~~~-~~~~~~l~v~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  158 (194)
T 2a38_A           82 ATNGSGQ-ATSTAELLVKAETAPPNFVQR-LQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQISQEGDL  158 (194)
T ss_dssp             EEETTEE-EEEEEEEEEECCCEEEEEEEC-CCCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEEETTE
T ss_pred             EEcCCce-EeEEEEEEEccCCCCCEEEeC-CccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECCCCCcEEEEEcCCE
Confidence            9998776 555566666533 23444433 345678899999999999 778889999999998876666665554333 


Q ss_pred             -eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        237 -VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       237 -~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                       .|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence             7999999999999999999999998888887776

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=193.38  Aligned_cols=221  Identities=16%  Similarity=0.227  Sum_probs=150.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee---eceEEEeccCCCCCeEEEEEEEcCCCc---eE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGK---EV  263 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~  263 (471)
                      ...+.+|+.++|.|.+ .+.    ++|++++..+.  .+......   .+.|.|.+++.+|+|.|+|.+.|..|.   ..
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (289)
T 3mjg_X            9 ELVLNVSSTFVLTCSG-SAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER   81 (289)
T ss_dssp             EEECCTTCCEEEEEEE-SSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred             eEEEeCCCcEEEEEec-cce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence            4567899999999998 443    99999988752  22222111   357999999999999999999998765   33


Q ss_pred             EEEEEEEEeCCceeeCCCcc---EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCC
Q psy17058        264 MNAYIHVLTLPAVTITPSEY---VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       264 ~~~~l~V~~~p~~~~~~~~~---~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      ..+.|.|..+....+.....   ..+.+|+.+.|.|.+. .|.+.+.|++.+........  ...... +.    ...|+
T Consensus        82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~--~~~~~~-~~----~~~d~  153 (289)
T 3mjg_X           82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP--YDHQRG-FS----GIFED  153 (289)
T ss_dssp             EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC--EETTTE-EE----ECCCS
T ss_pred             EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee--ecCCcC-ee----eeccC
Confidence            44455544333322222212   5789999999999998 78888999887533221111  011111 11    35799


Q ss_pred             eEEEEEEEcCCCceE-EEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcC
Q psy17058        341 GQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRP  419 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~  419 (471)
                      |.|+|.|.|..+... ..+.|.|....                                             +|.+...+
T Consensus       154 G~Y~C~a~n~~~~~~s~~~~l~v~~~~---------------------------------------------~p~i~~~~  188 (289)
T 3mjg_X          154 RSYICKTTIGDREVDSDAYYVYRLQVS---------------------------------------------SINVSVNA  188 (289)
T ss_dssp             SEEEEEEEETTEEEECCCEEEEECCCC---------------------------------------------CCCCEEEE
T ss_pred             cEEEEEEEeCCceeeeeeEEEEecCCC---------------------------------------------CCCcEEeC
Confidence            999999998776553 33567666531                                             57777777


Q ss_pred             CeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCce----EE-------ecCeEEECCCC
Q psy17058        420 VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHV----VE-------YNGELRLGPHK  470 (471)
Q Consensus       420 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~----~~-------~~~~l~i~~~~  470 (471)
                      ....+.+|+++.|.|.+.|.|.+.++|+++|+.+....    ..       ..++|.|.+++
T Consensus       189 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  250 (289)
T 3mjg_X          189 VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE  250 (289)
T ss_dssp             SCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCC
T ss_pred             CcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccC
Confidence            77889999999999999999999999998877653321    11       33688888775

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=179.14  Aligned_cols=185  Identities=23%  Similarity=0.374  Sum_probs=147.7

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec--eEEEeccCCCCCeEEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....+..+...+.  .|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~P~~~~~~-~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (197)
T 3lcy_A            6 EAPGIRKEM-KDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT   83 (197)
T ss_dssp             EEEEEEECC-CCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred             CCCcccccC-CceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence            345554444 45678899999999999 678888999999988766555555544322  79999999999999999999


Q ss_pred             cCCCceEEEEEEEEEeCCceeeC--CCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEE
Q psy17058        257 NSAGKEVMNAYIHVLTLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTI  332 (471)
Q Consensus       257 ~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i  332 (471)
                      |..+.....+.|.|..+|.+...  ......+.+|+.+.|.|.+.|+|.+.+.|++++..+.....  .........|.|
T Consensus        84 n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (197)
T 3lcy_A           84 NEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM  163 (197)
T ss_dssp             CSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEE
T ss_pred             CCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEE
Confidence            99888888888988877765532  12345778999999999999999999999999988764322  222334478999


Q ss_pred             eecCC-CCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        333 ASVRE-SDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       333 ~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .++.. +|+|.|+|.|.|..|..+.++.|.|.++
T Consensus       164 ~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          164 KNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             SSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             ccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            99985 8999999999999999999999998753

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=182.06  Aligned_cols=170  Identities=16%  Similarity=0.195  Sum_probs=132.8

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee----ceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      ...+.+|+.+.|.|.+..+.|.+.++|++++..+..+.++.+..+.    ..|.|.+++.+|+|.|+|.+.|  +.....
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~   88 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNH   88 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEE
Confidence            3568899999999999666899999999999987766666654422    2699999999999999999999  444433


Q ss_pred             EEEEEE---------------------eCCceeeCCCccEEecCCCcEEEEEEEeec-CCCeEEEEeCCccCCCcccccc
Q psy17058        266 AYIHVL---------------------TLPAVTITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDE  323 (471)
Q Consensus       266 ~~l~V~---------------------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~  323 (471)
                      ..+.+.                     .+|.+...+  ...+.+|+.+.|.|.+.|. |.|.+.|+|++..+........
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~  166 (207)
T 3rbs_A           89 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF  166 (207)
T ss_dssp             EEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCC
T ss_pred             EEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEc
Confidence            333221                     134443322  3578899999999999998 9999999999998865433233


Q ss_pred             cCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       324 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.+.
T Consensus       167 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          167 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            3455689999999999999999999999999998888653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=1e-23  Score=198.61  Aligned_cols=240  Identities=14%  Similarity=0.195  Sum_probs=151.7

Q ss_pred             CceeEEcCCeEEEEEEccCCC--CCCeEEEEeCC--CCCC-----------------cCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPD--NDGK-----------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|+.++|.|.+ .+.  +.+.+.|+|+.  ..+.                 ...++.+..+    ...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            8 GAEVVKPGASVKISCKA-SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCcEEEEEEc-CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            34578899999999999 444  46789999973  3211                 1234444432    347999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCC
Q psy17058        244 ATGDEGKYTCIAENSAGKEVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDR  317 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~  317 (471)
                      +.+|+|.|.|.+.|..+.......|.|..    +|.+...+. ...+.+|+.+.|.|.+.|. |. +.+.|++++..+..
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC-SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc-cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence            99999999999998654444456777763    344443322 1245789999999999986 65 69999999876431


Q ss_pred             cc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC---CCCCCCCCCCCccccCCCcccC
Q psy17058        318 NL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP---EYGPISPRPGADILPDGDEYYR  388 (471)
Q Consensus       318 ~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~~~~w~~  388 (471)
                      ..      ........+.|.|..+..+| |.|+|.|.|..+.......+.+....   ..++...........       
T Consensus       166 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-------  237 (344)
T 1za6_B          166 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSG-------  237 (344)
T ss_dssp             EECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------------
T ss_pred             eECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccC-------
Confidence            10      00111234578999888888 99999999998875444333211000   000000000000000       


Q ss_pred             CCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCC--ceEEEecCCCCCCCce
Q psy17058        389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP--ISIRWQPLQGYFPSHV  457 (471)
Q Consensus       389 ~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~g~~l~~~~  457 (471)
                                         -...+|.+.+.+.......|+.+.|.|.+.|.++  +.|+|+|||++|....
T Consensus       238 -------------------~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  289 (344)
T 1za6_B          238 -------------------GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK  289 (344)
T ss_dssp             --------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE
T ss_pred             -------------------CCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE
Confidence                               0013577766554433334667999999999633  5899999999987543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=1.1e-23  Score=180.93  Aligned_cols=183  Identities=28%  Similarity=0.473  Sum_probs=145.0

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-CCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-GPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      +|.+. .+.....+.+|+.++|.|.+ .+.|.+.+.|++++..+.. ..++.+...+..|.|.+++.+|+|.|+|.+.|.
T Consensus         7 ~P~i~-~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (192)
T 2iep_A            7 APVIT-TPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG   84 (192)
T ss_dssp             EEEES-SCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred             Cceee-cCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence            34433 33445678899999999999 6778889999999876544 345555555667999999999999999999998


Q ss_pred             CCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCC
Q psy17058        259 AGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE  337 (471)
Q Consensus       259 ~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  337 (471)
                      .+. ......|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+..... ......+.|.|.++..
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~  162 (192)
T 2iep_A           85 VGGAVESCGALQVKMKPKITRPPI-NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR-IAVLESGSLRIHNVQK  162 (192)
T ss_dssp             SSCCEEEEEEEEEEEEEEEEECCC-CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS-EEECTTSCEEESSCCG
T ss_pred             CCceeEeEEEEEEEeCCccccCCc-ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc-EEEecCCcEEEecCCh
Confidence            776 56677888888888776543 56788999999999999999999999999988764432 1223345799999999


Q ss_pred             CCCeEEEEEEEcCCCce-EEEEEEEEecCC
Q psy17058        338 SDAGQYKCIGKNSAGTE-EKVITVAVEHRP  366 (471)
Q Consensus       338 ~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  366 (471)
                      +|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       163 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          163 EDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             hhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999988 456888887653

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=9.4e-23  Score=174.77  Aligned_cols=176  Identities=20%  Similarity=0.256  Sum_probs=138.7

Q ss_pred             CCeeeecCCCceeEEc-CCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE
Q psy17058        180 MPRIRIHPNASQTFIV-GDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~-g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      +|.+... . ...+.+ |+.++|.|.+ .+.|.  +.+.|++++..+.......   .+..|.|.+++.+|+|.|+|.+.
T Consensus         3 ~P~i~~~-~-~~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVTS-E-EVIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATRKNA---SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEEC-C-CEECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCCBCC---SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccccc-c-eEEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccceEe---ccEEEEEecCCcccCEEEEEEEE
Confidence            4555442 2 334556 9999999999 55665  7999999987754432221   36789999999999999999999


Q ss_pred             cCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEe--CCccCCC-----cccccccCceeE
Q psy17058        257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDR-----NLERDELTSRAV  329 (471)
Q Consensus       257 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~--~~~~~~~-----~~~~~~~~~~~~  329 (471)
                      |. +.....+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|+|.+.+.|++  ++..+..     ...........+
T Consensus        77 n~-~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~  154 (190)
T 2wv3_A           77 FV-SAPKANATIEVKAAPDITGHKR-SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE  154 (190)
T ss_dssp             ET-TEEEEEEEEEEECCCEEEEECS-EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred             eC-CcccccEEEEEecCCcccccCC-cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence            99 8888899999999998877653 4678999999999999999999999999  5554421     111112234468


Q ss_pred             EEEeecC-CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        330 YTIASVR-ESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       330 l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      |.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus       155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999 799999999999999999999888875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.91  E-value=4.3e-23  Score=176.59  Aligned_cols=173  Identities=26%  Similarity=0.456  Sum_probs=135.2

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce--EE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE--VM  264 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~  264 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|++++..+...  .++.... ++.|.|.+++.+|+|.|+|.+.+..+..  ..
T Consensus        10 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   87 (189)
T 2v5t_A           10 SPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNNLQILNINKSDEGIYRCEGRVEARGEIDFR   87 (189)
T ss_dssp             SSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEec-CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEE
Confidence            45678999999999999 67788999999998875532  2333323 5679999999999999999999886543  35


Q ss_pred             EEEEEEEeCCceeeCCCc-cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEE
Q psy17058        265 NAYIHVLTLPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       265 ~~~l~V~~~p~~~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      .+.+.+..+|.+...+.. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+..............|.|.++..+|+|.|
T Consensus        88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  167 (189)
T 2v5t_A           88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY  167 (189)
T ss_dssp             EEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEE
T ss_pred             EEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeE
Confidence            567777777776654432 3467889999999999999999999999998876544333344567899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy17058        344 KCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       344 ~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +|.|.|..|....++.|.|.
T Consensus       168 ~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          168 VCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCceeEEEEEEEE
Confidence            99999999999988888875

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.91  E-value=7.8e-23  Score=178.57  Aligned_cols=184  Identities=27%  Similarity=0.512  Sum_probs=145.3

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC-cCCCceEEee-e--ceEEEeccCC-CCCeEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQE-L--GVLRFNNIAT-GDEGKYTC  253 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~-~--~~l~i~~~~~-~d~G~Y~C  253 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+. ...++.+... +  ..|.|.+++. .|+|.|+|
T Consensus         5 ~pP~~~~~p-~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKP-QNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECC-CCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCC-CceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            456666654 45678999999999999 678889999999988765 3334444321 2  4799999999 99999999


Q ss_pred             EEEcCCCc-eEEEEEEEEEeC-------CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccC
Q psy17058        254 IAENSAGK-EVMNAYIHVLTL-------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT  325 (471)
Q Consensus       254 ~~~~~~~~-~~~~~~l~V~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~  325 (471)
                      .+.|..+. .+..+.|.|...       |.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-~~  160 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SL  160 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC-CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTE-EE
T ss_pred             EEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC-CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeE-Ec
Confidence            99999888 778889999875       5555544 34678899999999999999999999999998876432211 22


Q ss_pred             ceeEEEEeecCCCCCeEEEEEEEcCCCceEEE-EEEEEecCC
Q psy17058        326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKV-ITVAVEHRP  366 (471)
Q Consensus       326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p  366 (471)
                      ..+.|.|.++..+|+|.|+|.|.|..|..... +.|.|....
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            34589999999999999999999999998765 899998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.91  E-value=2e-23  Score=178.72  Aligned_cols=178  Identities=24%  Similarity=0.412  Sum_probs=137.6

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC----cc--cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MI--AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~----~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      +|.|...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+...    ..  .++.|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC------CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEEC-CccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            577888889999999999999999 7778899999999 4443311    11  45689999999999999999999887


Q ss_pred             CceeeeeEEEEEeeccCCeeeecCCC-ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEec
Q psy17058        164 GNVFQDYASIQVDKREMPRIRIHPNA-SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN  242 (471)
Q Consensus       164 ~~~~~~~~~l~v~~~~~p~~~~~~~~-~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~  242 (471)
                      +. ......+.+.+..+|.+...... ...+.+|+.++|.|.+ .+.|.+.+.|++++..+.....+.+....+.|.|.+
T Consensus        81 ~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~  158 (189)
T 2v5t_A           81 RG-EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRN  158 (189)
T ss_dssp             TT-EEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCCSSSEEEETTTTEEEECS
T ss_pred             CC-ceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcC
Confidence            55 33334444544455655443322 3345689999999999 677889999999998776666666655567899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        243 IATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +..+|+|.|+|.+.|..|....++.|.|.
T Consensus       159 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          159 IINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999999999999988888888875

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.90  E-value=3.1e-23  Score=178.87  Aligned_cols=165  Identities=15%  Similarity=0.207  Sum_probs=122.8

Q ss_pred             eeEEcCCeEEEEEEcc--CCCCCCeEEEEeCCCCCCc-----------------CCCceEEe--eeceEEEeccCCCCCe
Q psy17058        191 QTFIVGDRADIQCVLE--AGEPSPTQTWIRPDNDGKF-----------------GPDVEVYQ--ELGVLRFNNIATGDEG  249 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~--~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~--~~~~l~i~~~~~~d~G  249 (471)
                      .++..|+.++|.|.+.  .+.|.+.++|+|++.....                 ...+.+..  ....|.|.+++.+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            4678999999999532  5678899999998765321                 11112211  2346999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc------ccccc
Q psy17058        250 KYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN------LERDE  323 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~~~~  323 (471)
                      .|+|.+.|..+..+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+...      .....
T Consensus        83 ~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~-~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~  161 (203)
T 4fa8_A           83 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHS-ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK  161 (203)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEEEEEEEE-EECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred             EEEEEEEcCCCcEEEEEEEEecCCceeeecc-eeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence            9999999999988889999998877766554 3457789999999999999999999999876554321      11111


Q ss_pred             cCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       324 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ...-..+.|.+++.+|+|.|+|.|.|..|....
T Consensus       162 ~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          162 DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            222345667799999999999999999998865

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.90  E-value=1.8e-22  Score=176.18  Aligned_cols=182  Identities=24%  Similarity=0.451  Sum_probs=140.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC-CCcc--------cCcEEEEcCCCC-CCCeEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP-PNMI--------AGETLIINGITK-ADEGVYIC  157 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~-~~~~--------~~~~L~i~~v~~-~D~G~Y~C  157 (471)
                      ..+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+. ....        ....|.|.+++. +|+|.|+|
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET-TEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEEC-CEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            46899999999999999999999999 8888899999999 55553 1111        125899999999 99999999


Q ss_pred             EEEecCCceeeeeEEEEEeecc-----CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE
Q psy17058        158 SIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY  232 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~v~~~~-----~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  232 (471)
                      .+.|..+........|.|....     .|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+........ 
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~-  159 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMSNPRYS-  159 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC-CCEEEETTCCEEECCEE-ECSSCCEEEEEETTEECCTTSTTEE-
T ss_pred             EEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC-CceEeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccCCCeEE-
Confidence            9999877634555566665321     14554444 44567899999999999 7889999999999887554333222 


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCceEEE-EEEEEEeCC
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLP  274 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~~~p  274 (471)
                      ..++.|.|.+++.+|.|.|+|.|.|..|..... +.|.|...+
T Consensus       160 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          160 LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            236689999999999999999999999887654 788887543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=174.16  Aligned_cols=176  Identities=20%  Similarity=0.400  Sum_probs=140.0

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEee---------eceEEEeccCCCCC
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQE---------LGVLRFNNIATGDE  248 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~---------~~~l~i~~~~~~d~  248 (471)
                      +|.+...+ ....+.+|+.++|.|.+..+.|.+.+.|++++..+....  +..+...         .+.|.|.+++..|+
T Consensus         2 ~~~~~~~p-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECC-CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccCh-hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            34444444 466788999999999993278889999999988755442  1222111         35799999999999


Q ss_pred             eEEEEEEEcCCCceE-EEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCc
Q psy17058        249 GKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTS  326 (471)
Q Consensus       249 G~Y~C~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~  326 (471)
                      |.|+|.+.|..+... ..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+ .+.|++++..+......   ..
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~---~~  156 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE-DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GP  156 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSCEEEECCC-CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS---SC
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCCeEEcCCC-cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc---CC
Confidence            999999999876543 348889988888877654 4688899999999999999999 99999999887654331   56


Q ss_pred             eeEEEEeecCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy17058        327 RAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAV  362 (471)
Q Consensus       327 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  362 (471)
                      ...|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            7889999987  78999999999999885 7888888

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.90  E-value=4.1e-24  Score=199.48  Aligned_cols=217  Identities=11%  Similarity=0.164  Sum_probs=142.1

Q ss_pred             CeEEEEEEccCCCC-CCeEEEEeCCCCCCcCCCc--eEE-----eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        197 DRADIQCVLEAGEP-SPTQTWIRPDNDGKFGPDV--EVY-----QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       197 ~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~~~--~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      +.++|.|.+....| .+.++|+|+|..+......  ...     ...+.|.|.....+|+|.|+|++.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            69999999954445 4799999998775433211  011     112357788887789999999999976554433322


Q ss_pred             EE---EeCCceeeCCCccEEecCCCcEEEEEEEeec-CCC---eEEEEeCC-ccCCCcccc------cccCceeEEEEee
Q psy17058        269 HV---LTLPAVTITPSEYVSVRPGEPLTLECEATGR-PMP---TVSWVKYI-APFDRNLER------DELTSRAVYTIAS  334 (471)
Q Consensus       269 ~V---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~---~i~W~~~~-~~~~~~~~~------~~~~~~~~l~i~~  334 (471)
                      .+   ...|.+.+.++....+.+|+++.|.|.+.|. |.+   .+.|++++ ..+......      ......+.|.|.+
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~  184 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGT  184 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCH
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECH
Confidence            11   1234444444444457889999999999985 556   89999975 443321110      0112345899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCe
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR  414 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~  414 (471)
                      ++.+|+|.|+|.|.|..+.......+.+....                                           ..+|.
T Consensus       185 ~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~-------------------------------------------~~~P~  221 (323)
T 2wqr_A          185 RDWIEGETYQCRVTHPHLPRALMRSTTKTSGP-------------------------------------------RAAPE  221 (323)
T ss_dssp             HHHHTTCCEEEEEECTTSSSCEEEEECCCCSC-------------------------------------------CBCCE
T ss_pred             HHccCCCCEEEEEECCCCCCCeeeEEEccCCC-------------------------------------------CCCCE
Confidence            99999999999999987544333333222100                                           12577


Q ss_pred             eEEcCCeeeeeCCCeEEEEEEeccc-CCc-eEEEecCCCCCCCc
Q psy17058        415 ITLRPVRQTVKPGDIANIRCSAIGA-TPI-SIRWQPLQGYFPSH  456 (471)
Q Consensus       415 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~g~~l~~~  456 (471)
                      +.+.+.......|+.+.|.|.+.|. |++ .|+|+|||++|...
T Consensus       222 v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~  265 (323)
T 2wqr_A          222 VYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA  265 (323)
T ss_dssp             EEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             EEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC
Confidence            6654433223349999999999984 443 89999999998754

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=2.5e-22  Score=175.31  Aligned_cols=185  Identities=28%  Similarity=0.464  Sum_probs=139.6

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe---eeceEEEecc-CCCCCeEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNI-ATGDEGKYTCI  254 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~-~~~d~G~Y~C~  254 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+..........   ....|.|.++ +.+|+|.|+|.
T Consensus         5 ~~P~~~~~p-~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            5 TPPRFTRTP-VDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             EEEEEEECC-CCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCeEEeCc-ceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            345555544 45678899999999999 678889999999988754332221111   2456999999 59999999999


Q ss_pred             EEcCCCceEEEEEEEEEeC-------CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-----ccc
Q psy17058        255 AENSAGKEVMNAYIHVLTL-------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-----ERD  322 (471)
Q Consensus       255 ~~~~~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----~~~  322 (471)
                      +.|..+.....+.|.|...       |.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|++++..+....     ...
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  161 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP-QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL  161 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGGGCCTTCCEEEECC-CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEE
T ss_pred             EEcCCCcEEEEEEEEEeccCccCCCcceeecCC-cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEE
Confidence            9999888888888998864       4454443 34578899999999999999999999999998876431     111


Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCCCceE-EEEEEEEecCC
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRP  366 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p  366 (471)
                      .......|.|.+++.+|+|.|+|.|.|..|... ..+.|.|...+
T Consensus       162 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            123468999999999999999999999999875 44777777654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.90  E-value=1.2e-22  Score=175.10  Aligned_cols=178  Identities=23%  Similarity=0.381  Sum_probs=139.0

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-cc------cC--cEEEEcCCCCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-MI------AG--ETLIINGITKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-~~------~~--~~L~i~~v~~~D~G~Y~C~  158 (471)
                      +.+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+... ..      .+  ..|.|.+++.+|+|.|+|.
T Consensus         2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET-TEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEEC-CEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            46889999999999999999999999 7888899999999 5444322 11      12  3899999999999999999


Q ss_pred             EEecCCceeeeeEEEEEeeccCCeeeecC----CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe-
Q psy17058        159 IQNAQGNVFQDYASIQVDKREMPRIRIHP----NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-  233 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~~~p~~~~~~----~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-  233 (471)
                      +.|..+. ......|.|.  .+|.+....    .....+.+|+.++|.|.+ .+.|.+.+.|++++..+....++.+.. 
T Consensus        81 ~~n~~g~-~~~~~~l~V~--~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (197)
T 2j8h_A           81 ATNQGGS-VSGTASLEVE--VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (197)
T ss_dssp             EEETTEE-EEEEEEEEEE--EEEEECCSSCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred             EEECCCc-eeEEEEEEEc--CCCcCCCCccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecCCCEEEEEc
Confidence            9998766 5555555554  333332211    133457789999999999 688899999999998766555555443 


Q ss_pred             -eeceEEEec-cCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        234 -ELGVLRFNN-IATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       234 -~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                       ....|.|.+ +..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus       157 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence             245799999 99999999999999999998888888875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.90  E-value=2e-22  Score=179.69  Aligned_cols=178  Identities=20%  Similarity=0.385  Sum_probs=139.3

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|++++..+......   ........|.|.+++..|+|.|+|.+.|..+.....
T Consensus        23 ~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            34678899999999999 67888999999998875543322   334446689999999999999999999988888888


Q ss_pred             EEEEEEeC----CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEe----CCccCCCcccc----------cccCce
Q psy17058        266 AYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLER----------DELTSR  327 (471)
Q Consensus       266 ~~l~V~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~----~~~~~~~~~~~----------~~~~~~  327 (471)
                      +.|.|...    |.+.........+.+|+.+.|.|.+.+.|.+.+.|++    ++..+......          ......
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  181 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD  181 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEE
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCc
Confidence            88888762    3344444455678899999999999999999999999    77666432110          112346


Q ss_pred             eEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCC
Q psy17058        328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE  367 (471)
Q Consensus       328 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  367 (471)
                      ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       182 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred             eEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence            7899999999999999999999999999999999988763

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=2.7e-23  Score=178.35  Aligned_cols=180  Identities=26%  Similarity=0.503  Sum_probs=139.6

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC---cc---cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MI---AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~---~~---~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +.+|.|...+....+.+|+++.|.|. .+.|.+.+.|+++ +..+...   ..   .+..|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEET-TEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEEC-CEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            45677777788889999999999999 7788889999998 5444321   11   456799999999999999999998


Q ss_pred             cCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEe
Q psy17058        162 AQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN  241 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~  241 (471)
                      ..+........+.|.  .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....++.... .+.|.|.
T Consensus        84 ~~~~~~~~~~~l~v~--~~p~~~~~~-~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~-~~~L~i~  158 (192)
T 2iep_A           84 GVGGAVESCGALQVK--MKPKITRPP-INVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRENSRIAVLE-SGSLRIH  158 (192)
T ss_dssp             SSSCCEEEEEEEEEE--EEEEEEECC-CCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCCSSEEECT-TSCEEES
T ss_pred             CCCceeEeEEEEEEE--eCCccccCC-cceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEccCCCcEEEec-CCcEEEe
Confidence            876633444455554  455555443 35678899999999999 778889999999988766555554444 5689999


Q ss_pred             ccCCCCCeEEEEEEEcCCCce-EEEEEEEEEeCC
Q psy17058        242 NIATGDEGKYTCIAENSAGKE-VMNAYIHVLTLP  274 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p  274 (471)
                      ++..+|+|.|+|.+.|..|.. +..+.|.|..+|
T Consensus       159 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          159 NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            999999999999999998876 456788887654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=1.8e-22  Score=171.75  Aligned_cols=166  Identities=22%  Similarity=0.465  Sum_probs=135.5

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee----eceEEEeccCCCCCeEEEEEEEcCCCc-eE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENSAGK-EV  263 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~  263 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|++++..+.......+...    .+.|.|.+++.+|+|.|+|.+.+..+. .+
T Consensus        10 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   88 (182)
T 1rhf_A           10 VKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   88 (182)
T ss_dssp             EEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             cceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence            45678899999999999 5788899999999887655544333332    257999999999999999999998664 45


Q ss_pred             EEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeE
Q psy17058        264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       264 ~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.| .+.|++++..+.....     ....|.|.++  +|+|.
T Consensus        89 ~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----~~~~L~i~~~--~d~G~  160 (182)
T 1rhf_A           89 QPVWLTVEGVPFFTVEPK-DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-----SPSVLNVTGV--TQSTM  160 (182)
T ss_dssp             CCEEEEEECSCEEEECCC-CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-----SSEEEEECCC--SSCEE
T ss_pred             EEEEEEEecCCeEEecCc-ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-----CceEEEEecc--ccCeE
Confidence            678899999998877654 4688999999999999999999 9999999988753321     6678999988  58999


Q ss_pred             EEEEEEcCCCceE-EEEEEEEe
Q psy17058        343 YKCIGKNSAGTEE-KVITVAVE  363 (471)
Q Consensus       343 Y~C~a~n~~g~~~-~~~~l~V~  363 (471)
                      |+|.|.|..|... .++.|.|+
T Consensus       161 Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          161 FSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEECCCCCcccceEEEEeC
Confidence            9999999999885 47777763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.90  E-value=7.6e-23  Score=176.24  Aligned_cols=180  Identities=19%  Similarity=0.307  Sum_probs=140.5

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      ...+|.+...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEET-TEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEEC-CEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            346788999999999999999999999 7788889999999 544432221       2238999999999999999999


Q ss_pred             EecCCceeeeeEEEEEeeccCCeeeec--CCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--
Q psy17058        160 QNAQGNVFQDYASIQVDKREMPRIRIH--PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--  235 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~~~~p~~~~~--~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--  235 (471)
                      .+..+. ......+.|.  .+|.....  ......+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+....  
T Consensus        83 ~n~~~~-~~~~~~l~v~--~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  158 (197)
T 3lcy_A           83 TNEVGE-VETSSKLLLQ--ATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITIENTEHY  158 (197)
T ss_dssp             ECSSCE-EEEEEEEEEE--EEEEECTTSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECSSE
T ss_pred             ECCCCc-eeEEEEEEEE--cCCCCCCCccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCCCCceEEEEcCCE
Confidence            988776 5555555554  33433322  1234457799999999999 68899999999999876666665554432  


Q ss_pred             ceEEEeccCC-CCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        236 GVLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       236 ~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                      ..|.|.++.. +|.|.|+|.+.|..|.....+.|.|..
T Consensus       159 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            5799999985 899999999999999998888888864

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.90  E-value=2.5e-23  Score=188.14  Aligned_cols=263  Identities=13%  Similarity=0.145  Sum_probs=107.9

Q ss_pred             cEEEcCCceeecCCCcEEEEeeCCCCCC-eEEEEeCCCCCCC-CCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLP-PNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~~~~p~~-~v~W~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      ++.+.|+...|.+|+++.|.|..+.+.+ .+.|.-....... ........|.|.+++.+  |.|.|.+.... ......
T Consensus         1 ~~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~-~~~~~~   77 (291)
T 1mq8_A            1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPD-GQSTAK   77 (291)
T ss_dssp             CEEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSS-CEEEEE
T ss_pred             CeEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcCC-ccEEEE
Confidence            3677888999999999999999333444 4888643122211 11112236899998854  46999997543 324444


Q ss_pred             EEEEEeeccCCee-eecCCCceeEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCC
Q psy17058        171 ASIQVDKREMPRI-RIHPNASQTFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD  247 (471)
Q Consensus       171 ~~l~v~~~~~p~~-~~~~~~~~~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  247 (471)
                      +.+.|.  .+|.. .+.+. ...+.+|+.++|.|.+.++.|..  +|+|+|++..+...... ......+|.+.....+|
T Consensus        78 v~l~V~--~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-~~~~~~~l~~~~~~~D~  153 (291)
T 1mq8_A           78 TFLTVY--WTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHH  153 (291)
T ss_dssp             CEEEEC--BCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-BTTEEEEEECCCSSSCS
T ss_pred             EEEEEe--cCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-CCCceEEEEeeeeeccC
Confidence            445554  44432 23322 23477899999999997777765  68999998764322211 11113456666666677


Q ss_pred             CeEEEEEEEcCCCc--------eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeCCccCC
Q psy17058        248 EGKYTCIAENSAGK--------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKYIAPFD  316 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~--------~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~~~~~~  316 (471)
                      .+.|+|+|.|..+.        .+....|.|+++|...........+.+|+.++|.|.+.|+|++   .+.|+++|+.+.
T Consensus       154 g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~  233 (291)
T 1mq8_A          154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (291)
T ss_dssp             SCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------
T ss_pred             CceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecC
Confidence            77999999986442        2445688888876432221112267899999999999997554   599999998886


Q ss_pred             CcccccccCceeEEEEeec---CC--CCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        317 RNLERDELTSRAVYTIASV---RE--SDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       317 ~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .....    ....+++...   ..  ++.+.|+|.|.|.....+....|.|..-|
T Consensus       234 ~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~  284 (291)
T 1mq8_A          234 PTVTY----GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP  284 (291)
T ss_dssp             -------------------------------------------------------
T ss_pred             ceeee----cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence            43221    1223333332   23  34668889998865556667778877643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=3.1e-22  Score=174.64  Aligned_cols=172  Identities=20%  Similarity=0.261  Sum_probs=136.8

Q ss_pred             EcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec--eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       194 ~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      ..++.+.|.|.+....|.+.+.|++++..+....++.+...+.  .|.|.+++.+|+|.|+|.+.|..+.....+.|.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            4678889999984445688999999998877666666554333  49999999999999999999988877766666554


Q ss_pred             e--------------------CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccc---cCcee
Q psy17058        272 T--------------------LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE---LTSRA  328 (471)
Q Consensus       272 ~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~---~~~~~  328 (471)
                      .                    .|.+.........+.+|+.+.|.|.+.|+|.+.+.|++++..+........   .....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence            2                    444544444556889999999999999999999999999988764322111   13456


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            9999999999999999999999999999999988753

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.90  E-value=1.8e-22  Score=174.47  Aligned_cols=179  Identities=18%  Similarity=0.236  Sum_probs=131.0

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      +.+.....+.+|+.++|.|.+ .+.|.+.+.|++.... .+............|.|.+++.+|+|.|+|.+.|..+..+.
T Consensus         5 i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A            5 TTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCC-CCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             ECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCC-CccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            344444445699999999999 6788899999984322 22222222223457999999999999999999999887788


Q ss_pred             EEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecC-C--CeEEEEeCCccCCCccccc------ccCceeEEEEeec
Q psy17058        265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP-M--PTVSWVKYIAPFDRNLERD------ELTSRAVYTIASV  335 (471)
Q Consensus       265 ~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~--~~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~  335 (471)
                      .+.|.|..+|........ ..+.+|+.++|.|.+.|.+ .  ++|.|++++..+.......      .......|.|...
T Consensus        83 ~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~  161 (202)
T 1vca_A           83 GIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV  161 (202)
T ss_dssp             EEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred             EEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence            889999887753322112 4578999999999999854 3  3799999998764321111      0223456778888


Q ss_pred             CCCCCeEEEEEEEcCCCc-------eEEEEEEEEecCC
Q psy17058        336 RESDAGQYKCIGKNSAGT-------EEKVITVAVEHRP  366 (471)
Q Consensus       336 ~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~~p  366 (471)
                      ..+|.|.|+|+|.|..|.       .+.++.|.|.++|
T Consensus       162 ~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             GGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             eccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            889999999999998875       3567889998876

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.89  E-value=4.1e-22  Score=173.99  Aligned_cols=183  Identities=25%  Similarity=0.455  Sum_probs=137.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCC-CCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGI-TKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v-~~~D~G~Y~C~  158 (471)
                      ..+|.|...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ....|.|.++ +.+|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEEC-CcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            35788999999999999999999999 7788899999999 555443221        3457999999 59999999999


Q ss_pred             EEecCCceeeeeEEEEEeec-----cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC---CCce
Q psy17058        159 IQNAQGNVFQDYASIQVDKR-----EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG---PDVE  230 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~~~-----~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~---~~~~  230 (471)
                      +.|..+. ......|.|...     ..|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+...   .++.
T Consensus        83 a~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~  159 (212)
T 2yd6_A           83 ASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGP-QLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIK  159 (212)
T ss_dssp             EEETTEE-EEEEEEEEEECGGGCCTTCCEEEECC-CCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC------CCEE
T ss_pred             EEcCCCc-EEEEEEEEEeccCccCCCcceeecCC-cceeEecCCCEEEEEEe-cCCCCCeEEEEECCccccCcCCCceEE
Confidence            9998876 555666666532     124454443 34567899999999999 78899999999998775443   2333


Q ss_pred             EEe--eeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEEeCCc
Q psy17058        231 VYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVLTLPA  275 (471)
Q Consensus       231 ~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~  275 (471)
                      ...  ..+.|.|.+++.+|.|.|+|.|.|..|.. +..+.|.|...+.
T Consensus       160 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            222  14689999999999999999999998875 4457777776554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=3.1e-22  Score=173.02  Aligned_cols=177  Identities=22%  Similarity=0.335  Sum_probs=137.2

Q ss_pred             eeecCCCceeEEcCCeEEEEEE-ccCCCCC-CeEEEEeCCCCCCc--CCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        183 IRIHPNASQTFIVGDRADIQCV-LEAGEPS-PTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       183 ~~~~~~~~~~v~~g~~~~L~C~-~~~~~p~-~~v~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      +...+.....+.+|+.++|.|. + .+.|. +.+.|++++..+..  .........++.|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~~~~~~~~~~v~~G~~v~L~C~~~-~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           10 FPPEERPEVRVKEGKGMVLLCDPP-YHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CCSSCCCCEEEETTCCEEECCCCC-SEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEG
T ss_pred             cCcCCCceEEEECCCCEEEecccc-ccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEec
Confidence            3344455678899999999999 6 67788 99999999987643  233333344678999999999999999999986


Q ss_pred             CCceEE---EEEEEEE-------eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCcee
Q psy17058        259 AGKEVM---NAYIHVL-------TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA  328 (471)
Q Consensus       259 ~~~~~~---~~~l~V~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~  328 (471)
                      .+....   .+.+.+.       .+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~  165 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFK-DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE--ISTSGA  165 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECC-CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCE--EETTTT
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCC-ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCcee--ecCCCC
Confidence            654432   2333333       2344544443 56788999999999999999999999999987764422  233457


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            89999999999999999999999999999999886

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=1.3e-21  Score=167.60  Aligned_cols=173  Identities=22%  Similarity=0.318  Sum_probs=131.9

Q ss_pred             CCcEEEcCCceeecC-CCcEEEEee-CCCCC--CeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         91 ANEVQVTPRQQSAPE-GSQVTIECK-SNDPS--ATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~-G~~v~l~C~-~~~p~--~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      +|.|... ....+.+ |+++.|.|. .+.+.  +.+.|+++ +..+.....  .+..|.|.+++.+|+|.|+|.+.|. +
T Consensus         3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~   79 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN-GVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-S   79 (190)
T ss_dssp             CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEET-TEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-T
T ss_pred             CCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEEC-CEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-C
Confidence            5667664 4566777 999999999 66665  78999999 555543322  5678999999999999999999998 5


Q ss_pred             ceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe--CCCCCC---cCCCceEEeee--ce
Q psy17058        165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR--PDNDGK---FGPDVEVYQEL--GV  237 (471)
Q Consensus       165 ~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~--~~  237 (471)
                      . ......|.|.  .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++  ++..+.   ...++.+....  +.
T Consensus        80 ~-~~~~~~l~V~--~~p~~~~~~-~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~  154 (190)
T 2wv3_A           80 A-PKANATIEVK--AAPDITGHK-RSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE  154 (190)
T ss_dssp             E-EEEEEEEEEE--CCCEEEEEC-SEEEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred             c-ccccEEEEEe--cCCcccccC-CcceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence            4 5555555554  567766554 34568899999999999 788999999999  444322   23344443322  37


Q ss_pred             EEEeccC-CCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        238 LRFNNIA-TGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       238 l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      |.|.+++ .+|.|.|+|.+.|..|....++.|.|.
T Consensus       155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999 799999999999999998888888775

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=2.7e-22  Score=177.43  Aligned_cols=177  Identities=20%  Similarity=0.356  Sum_probs=140.6

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|++++..+......   ........|.|.+++.+|+|.|+|.+.|..+.....
T Consensus        27 ~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            45678899999999999 67788899999998876544332   333445589999999999999999999998888888


Q ss_pred             EEEEEEeCC----ceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEe----CCccCCCccc---------ccccCcee
Q psy17058        266 AYIHVLTLP----AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLE---------RDELTSRA  328 (471)
Q Consensus       266 ~~l~V~~~p----~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~----~~~~~~~~~~---------~~~~~~~~  328 (471)
                      +.|.|...+    .+.........+.+|+.+.|.|.+.++|.+.+.|++    ++..+.....         .......+
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  185 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE  185 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence            888888632    222223345688899999999999999999999999    6665532211         01223446


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       186 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence            79999999999999999999999999999999999876

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.89  E-value=3.1e-22  Score=174.86  Aligned_cols=179  Identities=15%  Similarity=0.229  Sum_probs=127.2

Q ss_pred             cCCceeecCC--CcEEEEeeCCCCCCeEEEEeC--CCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         97 TPRQQSAPEG--SQVTIECKSNDPSATIKWSKD--NQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        97 ~p~~~~v~~G--~~v~l~C~~~~p~~~v~W~~~--~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      .|..+.+.+|  ++++|.|....|.+.+.|++.  ++..+.....    ....|.|.+++.+|+|.|+|.|.|..+...+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s   92 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS   92 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred             CceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence            4568889999  999999993347789999885  3555443322    4568999999999999999999885444233


Q ss_pred             eeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCC--CCCeEEEEeCCCCCCcCCC-c-eE--------Eeeec
Q psy17058        169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGKFGPD-V-EV--------YQELG  236 (471)
Q Consensus       169 ~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~~~~~-~-~~--------~~~~~  236 (471)
                      ....|.|....+|.+.+.+.....+.+|+.++|.|.+ .+.  +.+.+.|++++..+..... . ..        ....+
T Consensus        93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (213)
T 2x1w_L           93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS  171 (213)
T ss_dssp             CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE-EECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEE
T ss_pred             EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE-ECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeE
Confidence            3355555433345566666665578999999999999 443  3458999999886432111 0 00        12245


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCce
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV  276 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  276 (471)
                      .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+
T Consensus       172 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             EEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            7999999999999999999999999999999999987765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.89  E-value=6.8e-22  Score=169.46  Aligned_cols=172  Identities=18%  Similarity=0.315  Sum_probs=133.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-CCeEEEEe-CCCCCCc-CCCceEEe---eeceEEEeccCCCCCeEEEEEEEcCC-Cc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-SPTQTWIR-PDNDGKF-GPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSA-GK  261 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~-~~~~~~~-~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~  261 (471)
                      ....+.+|+.++|.|.+ .+.+ .+.+.|++ ++..+.. ..++.+..   ....|.|.+++.+|+|.|+|.+.+.. +.
T Consensus        10 ~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (191)
T 1epf_A           10 SQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (191)
T ss_dssp             SSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence            35578899999999999 5554 78999999 6665442 23333322   24689999999999999999999987 45


Q ss_pred             eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-cccccCceeEEEEeecCCCCC
Q psy17058        262 EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       262 ~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|+|.+.+.|++++..+.... .......++.|.|.+++.+|+
T Consensus        89 ~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  167 (191)
T 1epf_A           89 SEATVNVKIFQKLMFKNAPT-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE  167 (191)
T ss_dssp             EEEEEEEEEECCSEEEECCS-SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGC
T ss_pred             eEEEEEEEeecCceEecCCC-cEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhC
Confidence            67778888888888776653 4678999999999999999999999999998775321 111223345799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEE
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |.|+|.|.|..+.......+.|
T Consensus       168 G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          168 GTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEEEEEEecceeEEEEEEEE
Confidence            9999999999876655555544

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.89  E-value=2.5e-22  Score=173.97  Aligned_cols=169  Identities=17%  Similarity=0.253  Sum_probs=128.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCe-EEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~-v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ...|.+.+.|....+.+|++++|.|. .+.|.+. +.|+++ +..+...   ...|.|.+++.+|+|.|+|.+.|..   
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~-g~~l~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~---   77 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHN-ESLISSQ---ASSYFIDAATVDDSGEYRCQTQLST---   77 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEET-TEEESCC---SSEEEESSCCGGGCEEEEEEETTSB---
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEEC-CEEcccC---ccEEEEecccccCCEEEEEEeCCCc---
Confidence            45688999998889999999999999 6666654 999999 5555432   3799999999999999999998743   


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                      .+....|.|.  .+|.+...+.  ..+.+|+.++|.|.+..+.|.+.+.|++++..+.      .....+.|.|.+++.+
T Consensus        78 ~s~~~~l~V~--~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~------~~~~~~~L~i~~v~~~  147 (204)
T 3sgj_C           78 LSDPVQLEVH--IGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK------YFHHNSDFYIPKATLK  147 (204)
T ss_dssp             CCCCEEEEEE--CSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE------EEEECCCEEESSCCGG
T ss_pred             ccccEEEEEe--cCceEecCCc--eeEeCCCcEEEEEEecCCCCCceEEEEECCcEee------cccCCceEEECcCCcc
Confidence            3334455554  5555544433  4688999999999995555778999999987622      2333678999999999


Q ss_pred             CCeEEEEEEEcC-CCceEEEEEEEEEeCC
Q psy17058        247 DEGKYTCIAENS-AGKEVMNAYIHVLTLP  274 (471)
Q Consensus       247 d~G~Y~C~~~~~-~~~~~~~~~l~V~~~p  274 (471)
                      |+|.|+|.+.|. .+..+..+.|.|..+|
T Consensus       148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          148 DSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            999999999994 3345666778887654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=1.2e-21  Score=168.55  Aligned_cols=171  Identities=18%  Similarity=0.336  Sum_probs=134.8

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCCCCcc--------c--------CcEEEEcCCCCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLPPNMI--------A--------GETLIINGITKAD  151 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~~~~~--------~--------~~~L~i~~v~~~D  151 (471)
                      .+|.|...|....+.+|+++.|.|. . +.|.+.+.|+++ +..+.....        .        .+.|.|.+++.+|
T Consensus         1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEET-TEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEEC-CEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence            3688899999999999999999999 6 889999999998 555543310        1        4689999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCCce
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVE  230 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~  230 (471)
                      +|.|+|.+.+..+........|.|  ..+|.+...+. ...+.+|+.++|.|.+ .+.|.+ .+.|++++..+...... 
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V--~~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~~-  154 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGL--EGLPYFLEEPE-DRTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAPGH-  154 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE--CCSCEEEECCC-CEEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred             CcEEEEEEEeCCCceecccEEEEE--ecCCeEEcCCC-cEEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCCCc-
Confidence            999999999976652333345555  46677665544 4678899999999999 788888 99999999876544332 


Q ss_pred             EEeeeceEEEeccCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy17058        231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHV  270 (471)
Q Consensus       231 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~V  270 (471)
                        ...+.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 --~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 --GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             --SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence              336789999987  78999999999988774 6777777

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.89  E-value=2.7e-22  Score=175.21  Aligned_cols=174  Identities=18%  Similarity=0.285  Sum_probs=133.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCC----CCeEEEEeCCCCC---------------------CcCCCceEEe-----eeceEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP----SPTQTWIRPDNDG---------------------KFGPDVEVYQ-----ELGVLR  239 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p----~~~v~W~~~~~~~---------------------~~~~~~~~~~-----~~~~l~  239 (471)
                      ...+.+|+.++|.|.+ .+.+    .+.+.|++++...                     ....+..+..     ....|.
T Consensus         9 ~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             eEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            4567899999999999 5555    4699999854221                     1122333322     246799


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCc
Q psy17058        240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRN  318 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~  318 (471)
                      |.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+. ...+.+|+.+.|.|.+ .|.|.+.+.|++++......
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~  166 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV-DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP  166 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEE-ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeee-ecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC
Confidence            999999999999999999988888889999998877654322 2247889999999999 88999999999965443322


Q ss_pred             ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       319 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      ...........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       167 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            22223345569999999999999999999999999999999998754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.89  E-value=4.8e-22  Score=173.37  Aligned_cols=174  Identities=20%  Similarity=0.337  Sum_probs=136.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC------------CcCCCceEEeeeceEEEeccCCCCCeEEEEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG------------KFGPDVEVYQELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      +....+.+|+.++|.|.+ .+.|.+.+.|++++..+            ....+..+  ....|.|.+++.+|+|.|+|.+
T Consensus         8 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~L~i~~v~~~D~G~Y~C~~   84 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSSGITFSSVTRKDNGEYTCMV   84 (212)
T ss_dssp             CSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETTEEEESCCCGGGCEEEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe--eceeEEEcccCcccCeEEEEEE
Confidence            445678899999999999 67788999999988762            11233332  2478999999999999999999


Q ss_pred             EcCCC--ceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEE-EeecCCCeEEEEeCCc-cCCCccc---------cc
Q psy17058        256 ENSAG--KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE-ATGRPMPTVSWVKYIA-PFDRNLE---------RD  322 (471)
Q Consensus       256 ~~~~~--~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~i~W~~~~~-~~~~~~~---------~~  322 (471)
                      .+..+  ..+..+.|.|..+|.+...+. ...+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....         ..
T Consensus        85 ~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~  163 (212)
T 1f97_A           85 SEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT  163 (212)
T ss_dssp             EETTSSSEEEEEEEEEEEBCCCCCEEEC-CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEE
T ss_pred             EccCCCcccEEEEEEEEEcCCCCcccCC-ccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeE
Confidence            99866  456778889988887655433 246889999999999 7889999999999998 7653221         11


Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEEEEecC
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHR  365 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~  365 (471)
                      .......|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.+.
T Consensus       164 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             ECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             ecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence            22346789999999999999999999999988  55677777764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=3.2e-22  Score=174.50  Aligned_cols=189  Identities=24%  Similarity=0.413  Sum_probs=135.8

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcE-----EEEcCCCCCCC
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGET-----LIINGITKADE  152 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~-----L~i~~v~~~D~  152 (471)
                      ...+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....         .++.     |.|.+++.+|+
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEET-TEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEEC-CEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence            345788999999999999999999999 7788889999999 444432110         2233     34456799999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY  232 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  232 (471)
                      |.|+|.+.|..+........+.|.... +.+.. ......+.+|+.++|.|.+..+.|.+.+.|++++..+........ 
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~-~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~-  161 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILR-DDFRQ-NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT-  161 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEEC-SSCSB-CCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEE-
T ss_pred             eEEEEEEECCCCceeecceEEEEEecc-cccee-CCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEE-
Confidence            999999999876533445566665432 22222 234557889999999999756788899999999887554433322 


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCceEE-EEEEEEEeCCceeeCC
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITP  280 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~V~~~p~~~~~~  280 (471)
                      ..++.|.|.+++.+|.|.|+|.+.|..|.... .+.|.|..+|.+...|
T Consensus       162 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          162 IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             ccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            33678999999999999999999999887554 4899999888776554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=1.2e-21  Score=167.89  Aligned_cols=175  Identities=27%  Similarity=0.409  Sum_probs=133.1

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCCCCc---------ccCcEEEEcCCCCCCCeEEEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLPPNM---------IAGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      ++.|.+.|.+..+.+|+++.|.|. .+.+ .+.+.|++.++..+....         .....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            578889999999999999999999 6655 789999993365544211         13468999999999999999999


Q ss_pred             EecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeece
Q psy17058        160 QNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGV  237 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~  237 (471)
                      .+..+.  .....+.|.+..+|.+...+. ...+.+|+.++|.|.+ .+.|.+.+.|++++..+....  ++.... ++.
T Consensus        82 ~~~~~~--~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~  156 (191)
T 1epf_A           82 TAEDGT--QSEATVNVKIFQKLMFKNAPT-PQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNY  156 (191)
T ss_dssp             EETTTE--EEEEEEEEEEECCSEEEECCS-SEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECT-TSC
T ss_pred             EcCCCc--ceEEEEEEEeecCceEecCCC-cEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceEEEec-CCe
Confidence            998754  234455555556677665543 4567899999999999 688999999999988755433  233322 568


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       238 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |.|.+++.+|+|.|+|.|.|..+.......+.|
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            999999999999999999998765554444444

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.88  E-value=4.7e-22  Score=173.68  Aligned_cols=175  Identities=17%  Similarity=0.163  Sum_probs=126.0

Q ss_pred             CceeEEcC--CeEEEEEEccCCCCCCeEEEEeC---CCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        189 ASQTFIVG--DRADIQCVLEAGEPSPTQTWIRP---DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       189 ~~~~v~~g--~~~~L~C~~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      ....+.+|  +.++|.|.+ .+ |.+.++|+++   +..+........ .....|.|.+++.+|+|.|+|.+.|..+...
T Consensus        15 ~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~~~~~~~~-~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             EEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECCCSSSCEE-ETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             eEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCccccCCCcccc-cCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence            35567889  999999999 44 7789999885   433333322322 3356799999999999999999988544322


Q ss_pred             -EEEEEEEEe--CCceeeCCCccEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCccc---ccc-------cCcee
Q psy17058        264 -MNAYIHVLT--LPAVTITPSEYVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNLE---RDE-------LTSRA  328 (471)
Q Consensus       264 -~~~~l~V~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~---~~~-------~~~~~  328 (471)
                       ..+.|.|..  +|.+.+.+...+.+.+|++++|.|.+.|.|.  +.+.|++++..+.....   ...       ....+
T Consensus        92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (213)
T 2x1w_L           92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS  171 (213)
T ss_dssp             CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEE
T ss_pred             EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeE
Confidence             225666643  3445555555558899999999999998654  47999999887543211   000       23356


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       172 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             EEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            79999999999999999999999999999999999876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.88  E-value=1.2e-23  Score=198.15  Aligned_cols=202  Identities=16%  Similarity=0.250  Sum_probs=156.1

Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCce
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE  230 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  230 (471)
                      |.|.|+|.+.+...       .+.+....+|.+...+. ...+.+|+.++|.|.+ .+.|.+.+.|++++..+.......
T Consensus       136 ~~~~~~C~~~~~l~-------~l~~~~c~~P~i~~~~~-~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~~  206 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-------HMPNASCGVPTLKVQVP-NASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKS  206 (347)
T ss_dssp             GGGCCCCSSSSCSS-------CCCCTTCCCCEEEEECC-SSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCC
T ss_pred             cccCCCCCCChHHh-------cCCcccCCCCceeccCC-ceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccccc
Confidence            57899998766221       12223345677666554 4578899999999999 788999999999987643322221


Q ss_pred             EEeeeceEEEeccCCCCCe-EEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEE
Q psy17058        231 VYQELGVLRFNNIATGDEG-KYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV  309 (471)
Q Consensus       231 ~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~  309 (471)
                      .....+.|.|.+++..|+| .|+|.+.|..|..+..+.|.|..+|.+..     ..+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus       207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~  281 (347)
T 2ifg_A          207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWL  281 (347)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEE-----CCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred             eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeee-----ccCccCceEEEEEEeeecCCCcEEEE
Confidence            2233668999999999999 99999999988888888888888777511     12457999999999999999999999


Q ss_pred             eCCccCCCcccc---------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        310 KYIAPFDRNLER---------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       310 ~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +++..+......         ......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            999887633211         112346789999999999999999999999999999999988764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.88  E-value=4.7e-22  Score=172.43  Aligned_cols=165  Identities=13%  Similarity=0.190  Sum_probs=123.3

Q ss_pred             CceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         99 RQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      ....+.+|+.+.|.|.  .+.|.+.++|+++ +..+.....         ....|.|.+++.+|+|.|+|.|.|  +. .
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kn-g~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~-a   85 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GK-A   85 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEET-TEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TT-E
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEEC-CEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CC-e
Confidence            3678999999999999  4579999999999 555533211         123699999999999999999999  33 2


Q ss_pred             eeeEEEEEee-------------------ccCCeeeecCCCceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCCcCC
Q psy17058        168 QDYASIQVDK-------------------REMPRIRIHPNASQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGKFGP  227 (471)
Q Consensus       168 ~~~~~l~v~~-------------------~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~~~~  227 (471)
                      .....+.+..                   ..+|.+....  ...+.+|+.++|.|.+ .+. |.+.++|+|++..+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~~~  162 (207)
T 3rbs_A           86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVDE  162 (207)
T ss_dssp             EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECCCC
T ss_pred             EEEEEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcEEEEEEE-eCCCCCCEEEEEECCEECCCCC
Confidence            2333332110                   0144443332  3568899999999999 666 899999999998765555


Q ss_pred             CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       228 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++........|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       163 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          163 KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            4443343457999999999999999999999999888877754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=1.3e-21  Score=170.62  Aligned_cols=179  Identities=19%  Similarity=0.367  Sum_probs=131.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------C----CCCcc-cCcEEEEcCCCCCCCeEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------L----PPNMI-AGETLIINGITKADEGVY  155 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------~----~~~~~-~~~~L~i~~v~~~D~G~Y  155 (471)
                      |..|...|..+.+.+|+++.|.|. .+.|.+.+.|++++...         +    ..+.. ....|.|.+++.+|+|.|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence            345677788899999999999999 77788999999994431         0    11111 457899999999999999


Q ss_pred             EEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCC-CCCcCCC------
Q psy17058        156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN-DGKFGPD------  228 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~-~~~~~~~------  228 (471)
                      +|.+.+..+. ......+.+.+..+|.+...+. ...+.+|+.++|.|.+..+.|.+.+.|++++. .+.....      
T Consensus        81 ~C~~~~~~g~-~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~  158 (212)
T 1f97_A           81 TCMVSEEGGQ-NYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM  158 (212)
T ss_dssp             EEEEEETTSS-SEEEEEEEEEEEBCCCCCEEEC-CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS
T ss_pred             EEEEEccCCC-cccEEEEEEEEEcCCCCcccCC-ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccccccc
Confidence            9999998663 3334445555445555443333 24678999999999943788999999999998 7554322      


Q ss_pred             ---ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce--EEEEEEEEE
Q psy17058        229 ---VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE--VMNAYIHVL  271 (471)
Q Consensus       229 ---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~  271 (471)
                         +......+.|.|.+++.+|.|.|+|.|.|..|..  +..+.|.|.
T Consensus       159 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence               2222335689999999999999999999998887  445566665

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=2.6e-22  Score=175.07  Aligned_cols=184  Identities=32%  Similarity=0.517  Sum_probs=133.6

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC----ceEEeeece-----EEEeccCCCCCeE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVYQELGV-----LRFNNIATGDEGK  250 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~-----l~i~~~~~~d~G~  250 (471)
                      +|.+... +....+.+|+.++|.|.+ .+.|.+.+.|++++..+.....    .......+.     |.|.+++..|+|.
T Consensus         9 pp~i~~~-p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            9 PPRIVEH-PSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEEC-CCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             CcceecC-CCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            3444444 345678899999999999 6788889999999876543221    111112233     3445678999999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCcee
Q psy17058        251 YTCIAENSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRA  328 (471)
Q Consensus       251 Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~  328 (471)
                      |+|.+.|..+.. +..+.|.|...+...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+...... .....+
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~-~~~~~~  165 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER-ITIRGG  165 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTT-EEEETT
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcce-EEccCC
Confidence            999999987654 445677776544333333345678899999999998 88999999999999887643221 122346


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCCceEEE-EEEEEecCC
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAGTEEKV-ITVAVEHRP  366 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p  366 (471)
                      .|.|.++..+|+|.|+|.|.|..|..... +.|.|..+|
T Consensus       166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence            89999999999999999999999987654 899998764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.88  E-value=6.6e-22  Score=167.22  Aligned_cols=170  Identities=19%  Similarity=0.228  Sum_probs=128.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ..+|.+.+.|....+.+|++++|.|. .+.+.+ .+.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.+..+. 
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~-~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~~~~~s-   76 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEE---TNSSLNIVNAKFEDSGEYKCQHQQVNES-   76 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEET-TEECSC---CSSEEEECSCCGGGCEEEEEECTTSSCC-
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEEC-CeECCC---CceEEEEeccceecCEEEEEEcCCcccc-
Confidence            36788999999989999999999999 666654 6999999 555543   3679999999999999999999875543 


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                        ....+.|.  .++.....+  ...+.+|+.++|.|.+..+.|.+.+.|++++..+...      ..++.|.|.+++.+
T Consensus        77 --~~~~l~V~--~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           77 --EPVYLEVF--SDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVE  144 (176)
T ss_dssp             --CCEEEEEE--CSSEEEEES--CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEEESSCCGG
T ss_pred             --ccEEEEEe--CcceeecCC--cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------cCCCeEEECCCCcc
Confidence              34455554  334333332  2467899999999999656777899999998764322      22578999999999


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEEEeCCc
Q psy17058        247 DEGKYTCIAENSAGK-EVMNAYIHVLTLPA  275 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~  275 (471)
                      |+|.|+|.+.|..+. .+..+.|.|..+|.
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            999999999996443 45567888887764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.88  E-value=4.8e-22  Score=172.14  Aligned_cols=168  Identities=14%  Similarity=0.238  Sum_probs=129.5

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      ..|.+.+.+.. ..+.+|+.++|.|.+ .+.|.+ .+.|++++..+...        ...|.|.+++.+|+|.|+|.+.|
T Consensus         6 p~p~i~~~p~~-~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQW-YRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQ--------ASSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCC-SEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCC--------SSEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCC-eEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccC--------ccEEEEecccccCCEEEEEEeCC
Confidence            34556665543 578899999999999 566655 49999998763322        37899999999999999999987


Q ss_pred             CCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CCCeEEEEeCCccCCCcccccccCceeEEEEeecC
Q psy17058        258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR  336 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~  336 (471)
                      .  ..+..+.|.|...|.+...+.  ..+.+|+++.|.|.+.+. |.+.+.|++++..+..      ......|.|.+++
T Consensus        76 ~--~~s~~~~l~V~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------~~~~~~L~i~~v~  145 (204)
T 3sgj_C           76 S--TLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFYIPKAT  145 (204)
T ss_dssp             S--BCCCCEEEEEECSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEECCCEEESSCC
T ss_pred             C--cccccEEEEEecCceEecCCc--eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------ccCCceEEECcCC
Confidence            4  445567788887776655543  577899999999999765 5578999999887532      2235689999999


Q ss_pred             CCCCeEEEEEEEcC-CCceEEEEEEEEecCC
Q psy17058        337 ESDAGQYKCIGKNS-AGTEEKVITVAVEHRP  366 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~-~g~~~~~~~l~V~~~p  366 (471)
                      .+|+|.|+|.|.|. .+..+..+.|.|..++
T Consensus       146 ~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          146 LKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            99999999999994 4555677889998765

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=4.6e-21  Score=170.76  Aligned_cols=178  Identities=21%  Similarity=0.400  Sum_probs=132.0

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      +....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ....|.|.+++.+|+|.|+|.+.+..+. ..
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~   99 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IR   99 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEET-TEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEEC-CcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc-eE
Confidence            34678999999999999 7788899999999 554432211        4568999999999999999999998776 55


Q ss_pred             eeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe----CCCCCCcCCCceEE----------
Q psy17058        169 DYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR----PDNDGKFGPDVEVY----------  232 (471)
Q Consensus       169 ~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~----~~~~~~~~~~~~~~----------  232 (471)
                      ....+.|...  ..|.+.........+.+|+.++|.|.+ .+.|.+.+.|++    ++..+.........          
T Consensus       100 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (241)
T 3grw_A          100 QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESV  178 (241)
T ss_dssp             EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBS
T ss_pred             EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeec
Confidence            5566666532  234444444556677899999999999 788889999999    77665443322111          


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceee
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI  278 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~  278 (471)
                      .....|.|.++..+|.|.|+|.+.|..|..+..+.|.|..+|....
T Consensus       179 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~  224 (241)
T 3grw_A          179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE  224 (241)
T ss_dssp             EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred             CCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence            1245799999999999999999999999999999999988776543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.87  E-value=1.3e-21  Score=169.19  Aligned_cols=178  Identities=16%  Similarity=0.265  Sum_probs=125.2

Q ss_pred             cEEEcCCceee-cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         93 EVQVTPRQQSA-PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        93 ~v~~~p~~~~v-~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      .+.+.|.+..+ .+|+++.|.|. .+.|.+.+.|++..+..+.....   ....|.|.+++.+|+|.|+|.|.|..+. .
T Consensus         2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~   80 (202)
T 1vca_A            2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-L   80 (202)
T ss_dssp             EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-E
T ss_pred             eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-E
Confidence            45667766555 49999999999 77899999999963443332222   3457999999999999999999998765 4


Q ss_pred             eeeEEEEEeeccCCe-eeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCce------EEeeeceE
Q psy17058        168 QDYASIQVDKREMPR-IRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVE------VYQELGVL  238 (471)
Q Consensus       168 ~~~~~l~v~~~~~p~-~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~------~~~~~~~l  238 (471)
                      +..+.|.|.  .+|. +.+.+.  ..+.+|+.++|.|.+..+.|.  +.++|+|++..+.......      .......|
T Consensus        81 ~~~~~l~V~--~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l  156 (202)
T 1vca_A           81 EKGIQVEIY--SFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEV  156 (202)
T ss_dssp             EEEEEEEEE--BCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEE
T ss_pred             eeEEEEEEE--eCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEE
Confidence            445555554  3333 233332  468899999999999544454  4799999987543211100      11223456


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc-------eEEEEEEEEEeCCc
Q psy17058        239 RFNNIATGDEGKYTCIAENSAGK-------EVMNAYIHVLTLPA  275 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~~-------~~~~~~l~V~~~p~  275 (471)
                      .|.....+|.|.|+|+|.|..+.       .+.++.|.|.++|.
T Consensus       157 ~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          157 TFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            78888888999999999997664       45678899988875

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=169.42  Aligned_cols=170  Identities=23%  Similarity=0.477  Sum_probs=135.6

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .+.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+...       ....|.|.+++..|+|.|+|.+.|..
T Consensus        18 ~~~i~~~p-~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~   88 (218)
T 3k0w_A           18 GSKITVNP-ESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNF   88 (218)
T ss_dssp             -CCEEECC-CCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred             CCEEEECC-CCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCC
Confidence            34455544 45678899999999999 78888999999998764432       25679999999999999999999987


Q ss_pred             Cce-EEEEEEEEEeC---------------CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccc
Q psy17058        260 GKE-VMNAYIHVLTL---------------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE  323 (471)
Q Consensus       260 ~~~-~~~~~l~V~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~  323 (471)
                      +.. +..+.|.|...               |.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|++++..+...     
T Consensus        89 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----  162 (218)
T 3k0w_A           89 TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----  162 (218)
T ss_dssp             CCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC-CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----
T ss_pred             CCceeeEEEEEEEccCcccccccccccCCCceEEECC-CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----
Confidence            654 55577888765               3444443 3467889999999999999999999999998876432     


Q ss_pred             cCceeEEEEeecCCCCCeEEEEEEEcCCCc-eEEEEEEEEecCC
Q psy17058        324 LTSRAVYTIASVRESDAGQYKCIGKNSAGT-EEKVITVAVEHRP  366 (471)
Q Consensus       324 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p  366 (471)
                        ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus       163 --~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          163 --TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             --CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             --CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence              3468999999999999999999999887 4667888887754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.87  E-value=2.8e-21  Score=168.04  Aligned_cols=177  Identities=17%  Similarity=0.273  Sum_probs=130.1

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC--------------------CCCcc--cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL--------------------PPNMI--AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~--------------------~~~~~--~~~~L~i~~v~~~  150 (471)
                      +.+.|.+..+.+|++++|.|. .+.+.+.+.|++++....                    ..+..  .++.|.|.+++.+
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~   81 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK   81 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence            456666788999999999999 777888999998732111                    01111  3458999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV  229 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~  229 (471)
                      |+|.|+|.+.+..+........|.|.... .|.+.....  . +.+|+.++|.|.+ .+.| +.+.|++++..+....++
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~-~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~~~~~~  156 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT--T-VKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQLTERM  156 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS--S-CCTTCCEEEEEEC-SCTT-CEEEEEETTEECCCCSSE
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCc--e-EeeCCCEEEEEEC-CCCC-CceEEEECCEeCCCCCCe
Confidence            99999999998864435555556665322 244433322  2 7789999999999 5555 799999999887766777


Q ss_pred             eEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEEeCCc
Q psy17058        230 EVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVLTLPA  275 (471)
Q Consensus       230 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~  275 (471)
                      .+...++.|.|.++..+|.|.|+|.+.|..|.. +..+.|.|..++.
T Consensus       157 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          157 TLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             EEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             EEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            666656889999999999999999999998874 4557777765553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=164.92  Aligned_cols=160  Identities=16%  Similarity=0.216  Sum_probs=120.9

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCc-e
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGN-V  166 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~-~  166 (471)
                      ..+|.|.+.|.. .+.+|++++|.|. .+ +.+.+.|+|+ +..   .......|.|.+++.+|+|.|+|.+.|..+. .
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~-g~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   79 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKL-SSS---RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSL   79 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEET-TTC---CEESSSEEEESSCCGGGCEEEEEEEEETTEEBC
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEEC-Ccc---ccCcccEEEECcCChhhCceEEEEEEcCCCccC
Confidence            467888888875 8999999999999 54 7789999999 443   2235779999999999999999999987642 1


Q ss_pred             eeeeEEEEEee-ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCC
Q psy17058        167 FQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT  245 (471)
Q Consensus       167 ~~~~~~l~v~~-~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  245 (471)
                      .+....|.|.. ..+|.+...+  ...+.+|+.++|.|.+ .+. .+.+.|+|++..+....  ......+.|.|.+++.
T Consensus        80 ~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~l~C~~-~~~-~~~~~w~k~g~~~~~~~--~~~~~~~~L~i~~v~~  153 (184)
T 2gi7_A           80 PSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQCQT-RYG-FDQFALYKEGDPAPYKN--PERWYRASFPIITVTA  153 (184)
T ss_dssp             CCCCEEEEEESSSCCCEEEEEC--CCSSCCTTCEEEEEEC-SSC-CCEEEEEECCCCTTSCC--CCEEEEESSSEEEETT
T ss_pred             CCCCEEEEecCcCCCCEEEeCC--CceecCCCcEEEEEEc-CCC-CcEEEEEECCCcCccee--cCCCceEEEEEccCCc
Confidence            23345555543 2345555544  3356799999999998 444 46999999998755422  2233366799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy17058        246 GDEGKYTCIAENSAG  260 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~  260 (471)
                      +|+|.|+|.+.|..+
T Consensus       154 ~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          154 AHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CCSEEEEEEEECTTS
T ss_pred             cCCeEEEEEEEeCCC
Confidence            999999999999754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=3.1e-21  Score=170.59  Aligned_cols=184  Identities=22%  Similarity=0.415  Sum_probs=137.0

Q ss_pred             CCCcEEEcC----CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEE
Q psy17058         90 QANEVQVTP----RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYI  156 (471)
Q Consensus        90 ~~~~v~~~p----~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~  156 (471)
                      .+|.+...+    ....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ....|.|.+++.+|+|.|+
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEET-TEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEEC-CccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            345554444    6788999999999999 7788889999998 555432211        4458999999999999999


Q ss_pred             EEEEecCCceeeeeEEEEEeecc--CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe----CCCCCCcCCCce
Q psy17058        157 CSIQNAQGNVFQDYASIQVDKRE--MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR----PDNDGKFGPDVE  230 (471)
Q Consensus       157 C~~~~~~~~~~~~~~~l~v~~~~--~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~----~~~~~~~~~~~~  230 (471)
                      |.+.|..+. ......+.|....  +|.+.........+.+|+.++|.|.+ .+.|.+.+.|++    ++..+.......
T Consensus        93 C~~~n~~~~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~~~  170 (231)
T 3ojm_B           93 CVVENEYGS-INHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPY  170 (231)
T ss_dssp             EEEEETTEE-EEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTTBSBCTTSCBC
T ss_pred             EEEecccCc-ccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCCccccCCCcce
Confidence            999998776 5556666665322  23333333445678899999999999 778889999999    665543332211


Q ss_pred             E---------EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCce
Q psy17058        231 V---------YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV  276 (471)
Q Consensus       231 ~---------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  276 (471)
                      .         ....+.|.|.++...|+|.|+|.+.|..|..+..+.|.|..+|..
T Consensus       171 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             EEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             EeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            1         111346999999999999999999999999999999999887654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.87  E-value=1.7e-21  Score=164.43  Aligned_cols=167  Identities=17%  Similarity=0.267  Sum_probs=125.4

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCe-EEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~-v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ..+|.+.+.|....+.+|++++|.|. .+.|.+. +.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.|..+  
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~-~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~~--   78 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN-ESLISS---QASSYFIDAATVNDSGEYRCQTNLSTL--   78 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEET-TEEEES---SCSEEEESSCCGGGCEEEEEECSSSCC--
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEEC-CEEccC---CceEEEEeCCCcccCEEEEEEeeCCcc--
Confidence            46788999998889999999999999 6666555 899999 554432   467999999999999999999987543  


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                       +....+.|.  .++... ... ...+.+|+.++|.|.+..+.|.+.+.|+|++..+.      .......|.|.+++.+
T Consensus        79 -s~~~~l~V~--~~~~~~-~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~------~~~~~~~L~i~~v~~~  147 (175)
T 1fnl_A           79 -SDPVQLEVH--IGWLLL-QAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK------YFHHNSDFHIPKATLK  147 (175)
T ss_dssp             -CCCEEEEEE--CSSEEE-ECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE------EEEECCCEEESSCCGG
T ss_pred             -cccEEEEEe--CCCcee-eCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc------CCCCCCEEEEcccChh
Confidence             334455554  334333 332 34678999999999994344446999999987632      2233678999999999


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEEEe
Q psy17058        247 DEGKYTCIAENSAGK-EVMNAYIHVLT  272 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~-~~~~~~l~V~~  272 (471)
                      |+|.|+|.+.|..+. .+..+.|.|..
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            999999999996543 44556666653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=5.5e-22  Score=173.77  Aligned_cols=184  Identities=28%  Similarity=0.489  Sum_probs=134.4

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceE----EEeccCCCCCeEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVL----RFNNIATGDEGKYT  252 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l----~i~~~~~~d~G~Y~  252 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....  ...+...++.+    .|.+++..|+|.|+
T Consensus         8 ~~P~i~~~p-~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRIIEHP-TDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEEECC-CCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEecCC-CceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            355555554 45678899999999999 678889999999987754432  12222222333    67889999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEEe-CCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcc-------ccc
Q psy17058        253 CIAENSAGKE-VMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNL-------ERD  322 (471)
Q Consensus       253 C~~~~~~~~~-~~~~~l~V~~-~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~-------~~~  322 (471)
                      |.+.|..+.. +..+.|.|.. +|.+...+ ....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....       ...
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  164 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV  164 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBCC-CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEECC-CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence            9999987754 3356666665 34444443 35678999999999999 899999999999998776221       111


Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .....++|.|.+++.+|+|.|+|.|.|..|....++.+.+...
T Consensus       165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            1224458999999999999999999999999877755555543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.5e-21  Score=168.78  Aligned_cols=173  Identities=21%  Similarity=0.443  Sum_probs=135.0

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ....+.|.+.|..+.+.+|+++.|.|. .+.|.+.+.|+++ +..+...  ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKM-NKEIPNG--NTSELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEET-TEECTTC--CSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEEC-CEECCCC--CCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            356788999999999999999999999 8888999999999 5544332  46799999999999999999999987753


Q ss_pred             eeeeEEEEEeecc-------------CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe
Q psy17058        167 FQDYASIQVDKRE-------------MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ  233 (471)
Q Consensus       167 ~~~~~~l~v~~~~-------------~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  233 (471)
                      .+....+.|....             +|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....      
T Consensus        92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~------  163 (218)
T 3k0w_A           92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP-TSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET------  163 (218)
T ss_dssp             ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC-CCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCC------
T ss_pred             eeeEEEEEEEccCcccccccccccCCCceEEECC-CceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCC------
Confidence            4555666665321             13444433 34578899999999999 788999999999987644332      


Q ss_pred             eeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEe
Q psy17058        234 ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLT  272 (471)
Q Consensus       234 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~  272 (471)
                       ...|.|.++..+|.|.|+|.+.|..|. .+..+.|.|..
T Consensus       164 -~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          164 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             -SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             -CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence             457999999999999999999998776 55566777755

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.87  E-value=6.2e-22  Score=177.98  Aligned_cols=201  Identities=12%  Similarity=0.150  Sum_probs=118.3

Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-----CCeEEEEeCCC
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-----SPTQTWIRPDN  221 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-----~~~v~W~~~~~  221 (471)
                      ++.+|+|.|+|.|.   +. ......+.+  ..++.+... +....+.+|+.++|.|.+ .+.|     .+.+.|+|++.
T Consensus        11 v~~~dsg~Y~C~a~---g~-~~~~~~~~~--~~~~~~~~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~   82 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GY-SFTNYWMNW--LRELVMTQS-PLTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLLQRP   82 (254)
T ss_dssp             ---------------------------------CCCEEEE-CSEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEEECT
T ss_pred             ecCCccEEEEEcCc---hh-hhhhhhhhe--eeceeEEeC-CceEEecCCCcEEEEeec-cCcccccCCCCceEEEEeCC
Confidence            78899999999998   22 111222222  224444433 345678899999999999 5665     48999998542


Q ss_pred             CCC--------------cCCCceEEee--eceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEEe---CCceeeCCC
Q psy17058        222 DGK--------------FGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVLT---LPAVTITPS  281 (471)
Q Consensus       222 ~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~---~p~~~~~~~  281 (471)
                      ...              ...++.+...  ...|.|.+++.+|+|.|+|.+.|..+.. .....|.|..   +|.+.+.+.
T Consensus        83 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~  162 (254)
T 2c1o_A           83 GQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPP  162 (254)
T ss_dssp             TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECC
T ss_pred             CCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecC
Confidence            211              1234444332  2379999999999999999999875532 2223555553   465655433


Q ss_pred             ccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCc-ccc--------cccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        282 EYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRN-LER--------DELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~-~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .. ....|+.+.|.|.+.| .|+ +.+.|++++..+... ...        ......+.|.|.++..+|+|.|+|.|.|.
T Consensus       163 ~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  241 (254)
T 2c1o_A          163 SS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK  241 (254)
T ss_dssp             CH-HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred             Ch-hhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcC
Confidence            22 2335789999999998 444 469999999876543 110        01123568999999999999999999998


Q ss_pred             CCceEE
Q psy17058        351 AGTEEK  356 (471)
Q Consensus       351 ~g~~~~  356 (471)
                      ......
T Consensus       242 ~~~~~~  247 (254)
T 2c1o_A          242 TSTSPI  247 (254)
T ss_dssp             TCSSCE
T ss_pred             CCCCcc
Confidence            876533

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=2.8e-21  Score=164.22  Aligned_cols=168  Identities=18%  Similarity=0.344  Sum_probs=126.9

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      +|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....         ....|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEEC-CeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            466777888899999999999999 7788899999998 555544322         13689999999999999999999


Q ss_pred             ecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCCceEEeeeceEE
Q psy17058        161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVEVYQELGVLR  239 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~l~  239 (471)
                      +..+...+....|.|.  .+|.+...+. ...+.+|+.++|.|.+ .+.|.+ .+.|++++..+.....     ....|.
T Consensus        81 ~~~~~~~~~~~~l~V~--~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~-----~~~~L~  151 (182)
T 1rhf_A           81 DGGETEISQPVWLTVE--GVPFFTVEPK-DLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAP-----SPSVLN  151 (182)
T ss_dssp             SCTTCEECCCEEEEEE--CSCEEEECCC-CEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEE-----SSEEEE
T ss_pred             cCCCcEEEEEEEEEEe--cCCeEEecCc-ceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCCCC-----CceEEE
Confidence            8766433444555554  6677666544 4578899999999999 788888 9999999876433211     366789


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy17058        240 FNNIATGDEGKYTCIAENSAGKEV-MNAYIHV  270 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~V  270 (471)
                      |.++  +|+|.|+|.+.|..|... ..+.|.|
T Consensus       152 i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          152 VTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Eecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            9988  589999999999988764 3666665

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=1.7e-21  Score=170.62  Aligned_cols=180  Identities=27%  Similarity=0.445  Sum_probs=134.8

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEE----EEcCCCCCCCeEE
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETL----IINGITKADEGVY  155 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L----~i~~v~~~D~G~Y  155 (471)
                      ...+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ..+.+    .|.+++.+|+|.|
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEET-TEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEEC-CcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            457899999999999999999999999 7888899999998 555443211       22223    6889999999999


Q ss_pred             EEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------CC
Q psy17058        156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------GP  227 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------~~  227 (471)
                      +|.+.|..+........+.|... +|.+...+ ....+.+|+.++|.|.+..+.|.+.+.|++++..+..        ..
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~-~~~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~  162 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVL-RDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS  162 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEE-CCSCSBCC-CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCC
T ss_pred             EEEEecCCCccccccceEEEEEe-CCCcEECC-CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCC
Confidence            99999987763344566666542 23333333 3556889999999999866788999999999876542        22


Q ss_pred             CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       228 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +.... ..+.|.|.+++.+|.|.|+|.+.|..|....+..+.+.
T Consensus       163 ~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          163 RVRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             SEEEE-TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cEEec-CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            22222 35689999999999999999999999887665544443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.87  E-value=3.4e-21  Score=166.17  Aligned_cols=165  Identities=16%  Similarity=0.223  Sum_probs=116.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC---C---cccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---N---MIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~---~---~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ..+|.|...|. ..+.+|++++|.|. .+.+. .+.|+|+ +..+..   .   ......|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYRE-KKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEES-SSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEEC-CccccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            36788888886 48999999999999 55554 7999999 555421   1   11568999999999999999999998


Q ss_pred             cC-Cc-eeeeeEEEEEee-ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEe---e
Q psy17058        162 AQ-GN-VFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQ---E  234 (471)
Q Consensus       162 ~~-~~-~~~~~~~l~v~~-~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~---~  234 (471)
                      .. +. ..+....|.|.. ...|.+...+  ...+.+|+.++|.|.+ .+. .+.+.|+|++..+..... .....   .
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~  155 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQCDS-QVA-FDGFILCKEGEDEHPQCLNSQPHARGSS  155 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEES--CSEEETTCCEEEEEEC-SSC-CSEEEEEEC------CEEEC------CC
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCC--ccccCCCCcEEEEEec-CCC-CcEEEEEECCCccCCccccccccCCCcc
Confidence            76 32 134455666654 2245544433  3468899999999999 555 679999999887432211 11111   1


Q ss_pred             eceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        235 LGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      ...|.|.+++.+|+|.|+|.|.|..+
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             eeEEEecccCcccCeEEEEEEEeCCC
Confidence            36899999999999999999999765

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.87  E-value=1e-21  Score=170.88  Aligned_cols=179  Identities=20%  Similarity=0.391  Sum_probs=133.8

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------C----CCCcc-cCcEEEEcCCCCCCCeE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------L----PPNMI-AGETLIINGITKADEGV  154 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------~----~~~~~-~~~~L~i~~v~~~D~G~  154 (471)
                      .++.+...|..+.+.+|+++.|.|. .+.|.+.+.|++++...         +    ..+.. ....|.|.+++.+|+|.
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcE
Confidence            4567777888899999999999999 77788999999984431         0    11111 44789999999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC------
Q psy17058        155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD------  228 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~------  228 (471)
                      |+|.+.+..+. ......+.+.+..+|.+..... ...+.+|+.++|.|.+..+.|.+.+.|++++..+.....      
T Consensus        83 Y~C~~~~~~g~-~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  160 (209)
T 1nbq_A           83 YTCMVSEEGGN-SYGEVKVKLIVLVPPSKPTVNI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS  160 (209)
T ss_dssp             EEEEEEETTSS-CEECCEEECCEEBCCCCCCCCC-BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCT
T ss_pred             EEEEEecCCCC-ccceEEEEEEEecCCcCCCccc-ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeee
Confidence            99999997653 3344555555555665544333 346789999999999657889999999999987654332      


Q ss_pred             ---ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEE--EEEEEE
Q psy17058        229 ---VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM--NAYIHV  270 (471)
Q Consensus       229 ---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~V  270 (471)
                         +.+....+.|.|.+++.+|.|.|+|.+.|..|....  .+.|.|
T Consensus       161 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          161 NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             TCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             ccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence               222223568999999999999999999999888733  344444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.87  E-value=4e-21  Score=165.48  Aligned_cols=178  Identities=15%  Similarity=0.257  Sum_probs=129.2

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE-EeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-YQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+..  .+.+|+.++|.|.+ .+ +.+.+.|+|++..+........ ....+.|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~i~~~p~~--~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            4 PKPTLWAEPGS--VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccCCC--cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            35666666543  68899999999998 44 6789999999987543211111 12356899999999999999999999


Q ss_pred             CCC--ceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeE
Q psy17058        258 SAG--KEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAV  329 (471)
Q Consensus       258 ~~~--~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~  329 (471)
                      ..+  ..+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+.+. ++.+.|++++..+.....   .........
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSALPS--PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAE  156 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEEESC--SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEeCCc--ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceE
Confidence            876  235567777764   344544443  267899999999999874 468999999887643211   112235678


Q ss_pred             EEEeecCCCCCeEEEEEEEcCCC-----ceEEEEEEEEe
Q psy17058        330 YTIASVRESDAGQYKCIGKNSAG-----TEEKVITVAVE  363 (471)
Q Consensus       330 l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~  363 (471)
                      |.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       157 L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          157 FPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99999999999999999999876     23445666653

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=167.95  Aligned_cols=164  Identities=15%  Similarity=0.164  Sum_probs=109.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC------cccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN------MIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .+|.|...|.. .+.+|++++|.|. .+.+. .+.|+|+ +..+...      ......|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKE-GSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEET-TCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEEC-CCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            67888888874 8999999999999 55554 9999999 5444321      114678999999999999999999887


Q ss_pred             CCc-eeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-eEE---eeec
Q psy17058        163 QGN-VFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-EVY---QELG  236 (471)
Q Consensus       163 ~~~-~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~---~~~~  236 (471)
                      .+. ..+....|.|... .+|.+...+  ...+.+|+.++|.|.+ .+.| +.+.|+|++..+...... ...   ....
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALP--SPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQA  156 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEE-SSCC-SEEEEEEC---CCEEEEECEECTTSCEEE
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccC--CccccCCCcEEEEEEc-CCCC-CEEEEEccCCcccccccccccccCCCcee
Confidence            543 1233455666532 234444332  2467899999999999 6667 899999999874321111 111   1136


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      .|.|.+++.+|+|.|+|.+.|..+
T Consensus       157 ~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          157 LFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEEeeecCcccCeeEEEEEEccCC
Confidence            899999999999999999998753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.87  E-value=7e-22  Score=171.89  Aligned_cols=173  Identities=20%  Similarity=0.359  Sum_probs=133.6

Q ss_pred             CCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC------------CcCCCceEEeeeceEEEeccCCCCCeEEEEE
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG------------KFGPDVEVYQELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      ++....+.+|+.++|.|.+ .+.|.+.+.|++++..+            ....++...  ...|.|.+++.+|+|.|+|.
T Consensus        10 ~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~L~i~~~~~~d~G~Y~C~   86 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--PTGITFKSVTREDTGTYTCM   86 (209)
T ss_dssp             SCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--TTEEECSCCCTTSCSEEEEE
T ss_pred             CCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee--ccEEEEeeCCHHHCcEEEEE
Confidence            3445678899999999999 67788999999988762            122333332  47899999999999999999


Q ss_pred             EEcCCC--ceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccc---------c
Q psy17058        255 AENSAG--KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLER---------D  322 (471)
Q Consensus       255 ~~~~~~--~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~---------~  322 (471)
                      +.+..+  ..+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+ .++|.+.+.|++++..+......         .
T Consensus        87 ~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  165 (209)
T 1nbq_A           87 VSEEGGNSYGEVKVKLIVLVPPSKPTVNI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV  165 (209)
T ss_dssp             EEETTSSCEECCEEECCEEBCCCCCCCCC-BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCC
T ss_pred             EecCCCCccceEEEEEEEecCCcCCCccc-ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceE
Confidence            999855  345677888888887655543 3468899999999997 88999999999999887643211         1


Q ss_pred             ccCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEEEEe
Q psy17058        323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVE  363 (471)
Q Consensus       323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~  363 (471)
                      .....+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       166 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             EcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            12256789999999999999999999999988  444555553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=4.6e-21  Score=163.85  Aligned_cols=173  Identities=15%  Similarity=0.245  Sum_probs=122.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC----C--CcccCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP----P--NMIAGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~----~--~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+|.|...|.. .+.+|++|+|.|....+...+.|+|+ +..+.    .  ....+..|.|.+++.+|+|.|+|.+.+..
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEET-TEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCCCCEEEEEEC-CCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            57889998877 89999999999993334578999999 44322    1  11246789999999999999999998754


Q ss_pred             Cc-eeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEe
Q psy17058        164 GN-VFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN  241 (471)
Q Consensus       164 ~~-~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~  241 (471)
                      +. ..+....|.|... .+|.+...+  ...+.+|+.++|.|.+ .+ +.+.+.|+|++..+..  ........+.|.|.
T Consensus        81 ~~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~--~~~~~~~~~~L~I~  154 (188)
T 1oll_A           81 LWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHV--QRGYGKVQAEFPLG  154 (188)
T ss_dssp             EECCCCCCEEEEEESCSCCCEEEEES--CSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCEE--EEEECSSEEEEEEE
T ss_pred             CCCCCCCceEEEecccCCCCeEEECC--CCccccCCEEEEEEEc-CC-CCCEEEEEECCccccc--cccCCCceeEEEEC
Confidence            32 1233455555532 245555444  3467899999999998 33 4569999999877543  11122335689999


Q ss_pred             ccCCCCCeEEEEEEEcCCC---ceEEEEEEEE
Q psy17058        242 NIATGDEGKYTCIAENSAG---KEVMNAYIHV  270 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~V  270 (471)
                      +++.+|+|.|+|.+.|...   ..+..+.|.|
T Consensus       155 ~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          155 PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             ECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             CCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            9999999999999987642   2334455554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.86  E-value=7.7e-21  Score=166.25  Aligned_cols=177  Identities=11%  Similarity=0.125  Sum_probs=125.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC------cccCc--EEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN------MIAGE--TLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~------~~~~~--~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..+|.|...|. ..+.+|++++|.|....+.+.+.|+|+ +..+...      .....  .|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~~~~~W~k~-g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIREAYLTQLMII-KNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCTTCSEEEEEEE-ETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCCCCCEEEEEEC-CCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            46789999887 579999999999993336789999999 4443211      11345  89999999999999999999


Q ss_pred             ecCCc-eeeeeEEEEEee-ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceE
Q psy17058        161 NAQGN-VFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL  238 (471)
Q Consensus       161 ~~~~~-~~~~~~~l~v~~-~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l  238 (471)
                      |..+. ..+....|.|.. ..+|.+...+  ...+.+|+.++|.|.+ .+.|.+.+.|+|++..+...  .......+.|
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p--~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~~--~~~~~~~~~L  159 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ--HQSGEHPANF  159 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESS--CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS--EEECSSSEEE
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCC--CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCccccc--ccCCCccCEE
Confidence            97653 123344555543 2345554444  3467899999999966 56677899999999875432  1222235689


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC-----ceEEEEEEEEEe
Q psy17058        239 RFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLT  272 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~V~~  272 (471)
                      .|.+++.+|+|.|+|.+.|...     ..+..+.|.|..
T Consensus       160 ~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          160 SLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             ECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             EEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            9999999999999999998632     233445666654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.86  E-value=2.4e-21  Score=169.15  Aligned_cols=176  Identities=15%  Similarity=0.274  Sum_probs=127.0

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC----CCeEEEEeCC---------------CCCCC-------CCcc--------c
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP----SATIKWSKDN---------------QEQLP-------PNMI--------A  138 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~---------------~~~~~-------~~~~--------~  138 (471)
                      |...+..+.+.+|++++|.|. .+.+    .+.+.|++.+               +..+.       .+..        .
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   82 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG   82 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence            344456778999999999999 5555    4699999842               11111       1111        2


Q ss_pred             CcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEe
Q psy17058        139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR  218 (471)
Q Consensus       139 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~  218 (471)
                      ..+|.|.+++.+|+|.|+|.+.+..+. ......|.|.  .+|.+...+. ...+.+|+.++|.|.+..+.|.+.+.|++
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~--~~p~~~~~~~-~~~~~~g~~v~l~C~~~~g~p~~~v~W~~  158 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVL--VKPSGTRCFV-DGSEEIGNDFKLKCEPKEGSLPLQFEWQK  158 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE--CCCBSCEEEE-ESCCBTTCCEEEEEECSBCCSSCEEEEEE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCc-cccEEEEEEE--cCCCCceeee-ecceecCCcEEEEecCCCCCCCCEEEEEE
Confidence            467999999999999999999988765 4555555554  4444332221 22367899999999997788999999999


Q ss_pred             CCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeC
Q psy17058        219 PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL  273 (471)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~  273 (471)
                      ++..............++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          159 LSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             CCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            7655444433333333668999999999999999999999999988888888643

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.86  E-value=6.6e-21  Score=164.08  Aligned_cols=165  Identities=15%  Similarity=0.212  Sum_probs=122.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCc------ccCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM------IAGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+|.|...|.. .+.+|++++|.|....+.+.+.|+|+ +..+....      .....|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTLEAREYRLDKE-ESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEET-TSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCCCCCEEEEEEC-CCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            57888888877 89999999999993337789999999 54443211      145789999999999999999999987


Q ss_pred             Cc-eeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCce---EEeeeceE
Q psy17058        164 GN-VFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE---VYQELGVL  238 (471)
Q Consensus       164 ~~-~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~l  238 (471)
                      +. ..+....|.|... .+|.+...+.  ..+.+|+.++|.|.+ .+ +.+.+.|+|++..+.......   .....+.|
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L  157 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPS--PLVTSGKSVTLLCQS-RS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEF  157 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESC--SEECTTCCEEEEEEE-EE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCc--ceecCCCeEEEEEec-CC-CCCEEEEEeCCCcccceeecccccccCcceEE
Confidence            62 2344556666532 3455554443  267899999999998 44 456899999988754432111   12235679


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC
Q psy17058        239 RFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      .|.+++.+|+|.|+|.+.|..+
T Consensus       158 ~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          158 PMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECSCCGGGCEEEEEEEECGGG
T ss_pred             EeCCCcccCCCeEEEEEEcCCC
Confidence            9999999999999999999765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=166.90  Aligned_cols=167  Identities=15%  Similarity=0.170  Sum_probs=113.8

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+.  ..+.+|+.++|.|.+ .+.|. .+.|+|++..+..... .......+.|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~i~~~p~--~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            4 SKATLWAEPG--SVISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CBCEEEEESC--SEEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCC--CcccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            4566666654  268899999999999 55555 9999999987543211 11122356799999999999999999998


Q ss_pred             CCCc--eEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc----cccCcee
Q psy17058        258 SAGK--EVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER----DELTSRA  328 (471)
Q Consensus       258 ~~~~--~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~----~~~~~~~  328 (471)
                      ..+.  .+..+.|.|..   +|.+...+  ...+.+|++++|.|.+.+.| +.+.|+|++..+......    .......
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSALP--SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQA  156 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEE
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEccC--CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCcee
Confidence            7653  24557788876   34444333  24688999999999999888 899999999876422110    1123457


Q ss_pred             EEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        329 VYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .|.|.+++.+|+|.|+|.|.|..+
T Consensus       157 ~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          157 LFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEEeeecCcccCeeEEEEEEccCC
Confidence            999999999999999999999765

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.86  E-value=1.1e-20  Score=164.28  Aligned_cols=170  Identities=16%  Similarity=0.258  Sum_probs=128.5

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-------------------CCCceEEeeeceEEEeccCCCCCeEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-------------------GPDVEVYQELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~l~i~~~~~~d~G~Y  251 (471)
                      ..+.+|+.++|.|.. .+.+.+.+.|++++.....                   ..+..+.. ++.|.|.+++.+|+|.|
T Consensus         9 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             SEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-TSCEEECSCCGGGCEEE
T ss_pred             ceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-CCeEEEccccccCCeEE
Confidence            367899999999997 6778889999987643211                   11222222 45799999999999999


Q ss_pred             EEEEEcCC-CceEEEEEEEEEeC---CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCce
Q psy17058        252 TCIAENSA-GKEVMNAYIHVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR  327 (471)
Q Consensus       252 ~C~~~~~~-~~~~~~~~l~V~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~  327 (471)
                      +|.+.+.. +.....+.|.|..+   |.+...+.  . +.+|+.+.|.|.+.+.| +.+.|++++..+............
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~  162 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT--T-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN  162 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS--S-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT
T ss_pred             EEEEEcccCceeEEEEEEEeccCCCCCEEecCCc--e-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC
Confidence            99999985 45667778888765   34443332  2 88999999999999866 799999999887654333333445


Q ss_pred             eEEEEeecCCCCCeEEEEEEEcCCCceE-EEEEEEEecCC
Q psy17058        328 AVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRP  366 (471)
Q Consensus       328 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p  366 (471)
                      .+|.|.++..+|+|.|+|.|.|..|... ..+.|.|..++
T Consensus       163 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          163 SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred             CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence            8899999999999999999999999874 45888888765

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.86  E-value=6.8e-21  Score=166.07  Aligned_cols=166  Identities=17%  Similarity=0.295  Sum_probs=126.0

Q ss_pred             cCCCcEEEEee-CC-CCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEE
Q psy17058        104 PEGSQVTIECK-SN-DPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQ  174 (471)
Q Consensus       104 ~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~  174 (471)
                      .+|+.+.|.|. .+ .|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.+.|..+. ......+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~   92 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLS   92 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEET-TEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEC
T ss_pred             EcCceEEEEEEEeccCCCceEEEEEC-CEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEE
Confidence            35677788888 44 46889999999 555543221       2245999999999999999999997765 44444443


Q ss_pred             Eee------------------ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee--
Q psy17058        175 VDK------------------REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--  234 (471)
Q Consensus       175 v~~------------------~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--  234 (471)
                      |..                  ...|.+....+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....++.+...  
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~  171 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAG  171 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEETT
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEEcCC
Confidence            321                  1145555555556678899999999999 7889999999999987666666655543  


Q ss_pred             -eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        235 -LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       235 -~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                       ...|.|.+++.+|.|.|+|.+.|..|.....+.|.|..
T Consensus       172 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence             23899999999999999999999999988888888864

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=1.1e-20  Score=160.84  Aligned_cols=163  Identities=20%  Similarity=0.362  Sum_probs=123.5

Q ss_pred             eEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      .+.+|+.++|.|.+ .+.|.+  .+.|++++..+.......   ....|.|.  +.+|+|.|+|.+.|.   ....+.|.
T Consensus         9 ~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~   79 (184)
T 3b5h_A            9 VEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQ   79 (184)
T ss_dssp             EEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEE
T ss_pred             EEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEECC---cCcEEEEE
Confidence            57899999999998 454555  999999887644332221   13345555  689999999999983   33567888


Q ss_pred             EEeCCceeeCCCccEEecCCCcEEEEEEEeecC-CCeEEEEe---CCcc-CCCc----ccccccCceeEEEEeecC-CCC
Q psy17058        270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVK---YIAP-FDRN----LERDELTSRAVYTIASVR-ESD  339 (471)
Q Consensus       270 V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~---~~~~-~~~~----~~~~~~~~~~~l~i~~~~-~~d  339 (471)
                      |..+|.+...+ ....+.+|+.+.|.|.+.|.| .+.+.|++   ++.. +...    ...........|.|.+++ .+|
T Consensus        80 V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d  158 (184)
T 3b5h_A           80 LHGPPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD  158 (184)
T ss_dssp             ECCSCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTS
T ss_pred             EecCCceeecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccccc
Confidence            88889887776 345789999999999999999 78999999   4433 2211    111122345689999999 899


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        340 AGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       340 ~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      +|.|+|.|.|..|.....+.|.|..
T Consensus       159 ~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          159 PGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CceEEEEEEeCCCcceEEEEEEEec
Confidence            9999999999999999999998864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.86  E-value=1.3e-21  Score=168.63  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=113.8

Q ss_pred             ceeecCCCcEEEEee----CCCCCCeEEEEeCCCCCCCCC-------------------c-----ccCcEEEEcCCCCCC
Q psy17058        100 QQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPN-------------------M-----IAGETLIINGITKAD  151 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~----~~~p~~~v~W~~~~~~~~~~~-------------------~-----~~~~~L~i~~v~~~D  151 (471)
                      ++++..|++++|.|.    .+.|.+.|.|+|+ +......                   .     .....|.|.+++.+|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKL-GPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEE-ETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEc-CCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            567999999999994    6778999999998 4322110                   0     034579999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc----CC
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF----GP  227 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~----~~  227 (471)
                      +|.|+|.|.|..+. ......|.|.  .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.++|+++++.+..    ..
T Consensus        81 ~G~Y~C~a~n~~g~-~~~~~~l~V~--~p~~~~~~~-~~~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~  155 (203)
T 4fa8_A           81 DGNYLCRMKLGETE-VTKQEHLSVV--KPLTLSVHS-ERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAPTAANG  155 (203)
T ss_dssp             CEEEEEEEEETTEE-EEEEEEEEEE--EEEEEEEEE-EECCSSCSCCEEEEEEE-EEESCCEEEECCC------------
T ss_pred             CeEEEEEEEcCCCc-EEEEEEEEec--CCceeeecc-eeEEEcCCCEEEEEEEc-CCCCCCEEEEEECCeeecCcccccc
Confidence            99999999998776 5555555554  455554443 34467799999999999 7899999999988765432    22


Q ss_pred             CceEEeeece---EEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        228 DVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       228 ~~~~~~~~~~---l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      ++.+.. +++   +.|.++..+|+|.|+|.|.|..|....
T Consensus       156 r~~~~~-~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          156 GVMKEK-DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEECT-TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eEEEeC-CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            333333 333   455789999999999999999998764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=7e-21  Score=164.45  Aligned_cols=170  Identities=21%  Similarity=0.325  Sum_probs=128.5

Q ss_pred             cCCceeecCCCcEEEEee--CCCCC-CeEEEEeCCCCCCC---CCc-c---cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         97 TPRQQSAPEGSQVTIECK--SNDPS-ATIKWSKDNQEQLP---PNM-I---AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~--~~~p~-~~v~W~~~~~~~~~---~~~-~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      .+..+.+.+|+++.|.|.  .+.|. +.+.|+++ +..+.   ... .   .++.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN-EFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEES-STTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEEC-CceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            346788999999999998  46677 89999999 44432   111 1   56789999999999999999999866552


Q ss_pred             eee--eEEEEEee-----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEE
Q psy17058        167 FQD--YASIQVDK-----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR  239 (471)
Q Consensus       167 ~~~--~~~l~v~~-----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~  239 (471)
                      ...  ...+.+..     ..+|.+...+. ...+.+|+.++|.|.+ .+.|.+.+.|++++..+..  .......++.|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~--~~~~~~~~~~L~  168 (201)
T 3s97_C           93 SVFSKFIPLIPIPERTTKPYPADIVVQFK-DVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPS--TAEISTSGAVLK  168 (201)
T ss_dssp             EEECCCEEEEEECCSSCCCEEEEEEEECC-CEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCT--TCEEETTTTEEE
T ss_pred             chhhcccceeeccccccCCCCCceEecCC-ceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCC--ceeecCCCCEEE
Confidence            221  22222221     12344544444 5678899999999999 7789999999999886443  334444467899


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      |.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus       169 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999999999999999998888888875

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.86  E-value=4.3e-21  Score=165.56  Aligned_cols=178  Identities=17%  Similarity=0.259  Sum_probs=125.0

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+.  ..+.+|+.++|.|.+ .+.|. .+.|+|++..+..... .........|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~i~~~p~--~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            4 PKPTLWAEPG--SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCEEEEESC--SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEeccCC--CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            4566666554  378899999999999 55554 7999999887532111 11122356899999999999999999999


Q ss_pred             CC-C--ceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc----cccCce
Q psy17058        258 SA-G--KEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER----DELTSR  327 (471)
Q Consensus       258 ~~-~--~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~----~~~~~~  327 (471)
                      .. +  ..+..+.|.|..   +|.+...+  ...+.+|++++|.|.+.+. .+.+.|++++..+......    ......
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  156 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSR  156 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEES--CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCE
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCC--ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcce
Confidence            76 4  335567788876   34444433  2478899999999999987 6799999999876422111    111235


Q ss_pred             eEEEEeecCCCCCeEEEEEEEcCCCce-----EEEEEEEEe
Q psy17058        328 AVYTIASVRESDAGQYKCIGKNSAGTE-----EKVITVAVE  363 (471)
Q Consensus       328 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~  363 (471)
                      ..|.|.+++.+|+|.|+|.|.|..+..     +..+.|.|.
T Consensus       157 ~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          157 AIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             eEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            899999999999999999999987622     445666664

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.86  E-value=9.7e-21  Score=165.59  Aligned_cols=180  Identities=15%  Similarity=0.177  Sum_probs=130.0

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-eEEeeec--eEEEeccCCCCCeEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-EVYQELG--VLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~--~l~i~~~~~~d~G~Y~C~~  255 (471)
                      .+|.+...+.  ..+.+|+.++|.|.+ .+ +.+.+.|+|++..+...... .......  .|.|.+++.+|+|.|+|.+
T Consensus         8 ~~P~i~~~p~--~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            8 PMPFISAKSS--PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             CCCCEEESSC--SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCC--CccCCCCCEEEEEEc-CC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            4566666654  368899999999998 44 67899999998875432211 0112244  8999999999999999999


Q ss_pred             EcCCCce--EEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEE
Q psy17058        256 ENSAGKE--VMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY  330 (471)
Q Consensus       256 ~~~~~~~--~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l  330 (471)
                      .|..+..  +..+.|.|..   +|.+...+  ...+.+|++++|.|.+.+.|.+.+.|+|+|..+....  ........|
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~--~~~~~~~~L  159 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH--QSGEHPANF  159 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESS--CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE--EECSSSEEE
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCC--CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccc--cCCCccCEE
Confidence            9976533  3446777765   45554444  3478899999999977777888999999998775421  123456899


Q ss_pred             EEeecCCCCCeEEEEEEEcCCC-----ceEEEEEEEEecCC
Q psy17058        331 TIASVRESDAGQYKCIGKNSAG-----TEEKVITVAVEHRP  366 (471)
Q Consensus       331 ~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~p  366 (471)
                      .|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.+.+
T Consensus       160 ~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          160 SLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             ECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             EEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            9999999999999999998642     23456788887653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.86  E-value=5.5e-21  Score=161.37  Aligned_cols=166  Identities=14%  Similarity=0.252  Sum_probs=126.6

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCe-EEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT-QTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+.+.+. ...+.+|+.++|.|.+ .+.|.+. +.|++++..+.        ...+.|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~p~i~~~p~-~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~n   75 (175)
T 1fnl_A            6 PKAVVFLEPQ-WYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLIS--------SQASSYFIDAATVNDSGEYRCQTNL   75 (175)
T ss_dssp             CCCEEEEESC-CSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEE--------SSCSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEEcCC-ceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEcc--------CCceEEEEeCCCcccCEEEEEEeeC
Confidence            4566666654 3478899999999999 5666554 89999886532        2366899999999999999999988


Q ss_pred             CCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecC
Q psy17058        258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVR  336 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~  336 (471)
                      ..+  +..+.|.|..++.....+  ...+.+|+.+.|.|.+.+.+++ .+.|++++..+..      ......|.|.+++
T Consensus        76 ~~~--s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------~~~~~~L~i~~v~  145 (175)
T 1fnl_A           76 STL--SDPVQLEVHIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKAT  145 (175)
T ss_dssp             SCC--CCCEEEEEECSSEEEECS--CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCC
T ss_pred             Ccc--cccEEEEEeCCCceeeCC--CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------CCCCCEEEEcccC
Confidence            544  445667777555443332  3468899999999999987665 9999999887632      2345789999999


Q ss_pred             CCCCeEEEEEEEcCCCc-eEEEEEEEEec
Q psy17058        337 ESDAGQYKCIGKNSAGT-EEKVITVAVEH  364 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  364 (471)
                      .+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       146 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          146 LKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             hhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            99999999999997664 45567787764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.85  E-value=3.8e-21  Score=172.27  Aligned_cols=174  Identities=18%  Similarity=0.342  Sum_probs=126.2

Q ss_pred             CCceeEEcCCeEEEEEEccCC---CCCCeEEEEeCCCCCC------------------------------cCCCceEEe-
Q psy17058        188 NASQTFIVGDRADIQCVLEAG---EPSPTQTWIRPDNDGK------------------------------FGPDVEVYQ-  233 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~---~p~~~v~W~~~~~~~~------------------------------~~~~~~~~~-  233 (471)
                      .....+.+|+.++|.|.+ .+   .|.+.+.|++++....                              ...+..+.. 
T Consensus         9 ~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   87 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   87 (250)
T ss_dssp             CSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred             CCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence            345678899999999998 44   6778999999875420                              111111111 


Q ss_pred             eeceEEEeccCCCCCeEEEEEEEcCCCce-----EEEEEEEEEeC---CceeeCCCccEEecCCCcEEEEEEEeecCCCe
Q psy17058        234 ELGVLRFNNIATGDEGKYTCIAENSAGKE-----VMNAYIHVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPT  305 (471)
Q Consensus       234 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~  305 (471)
                      ....|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|..+   |.+.+.......+.+|+.+.|.|.+.+.|.|.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence            12479999999999999999999876642     45777888764   44555555556788899999999999999999


Q ss_pred             EEEEeCCccCCCcc-----------------------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC---ceEEEEE
Q psy17058        306 VSWVKYIAPFDRNL-----------------------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG---TEEKVIT  359 (471)
Q Consensus       306 i~W~~~~~~~~~~~-----------------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~  359 (471)
                      +.|++++..+....                       ..........|.|.+++.+|+|.|+|.|.|..|   ....++.
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~  247 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI  247 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEE
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEE
Confidence            99999988764311                       000011336899999999999999999999555   5555555


Q ss_pred             EEE
Q psy17058        360 VAV  362 (471)
Q Consensus       360 l~V  362 (471)
                      |.|
T Consensus       248 l~V  250 (250)
T 2fbo_J          248 LKV  250 (250)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=161.76  Aligned_cols=158  Identities=19%  Similarity=0.246  Sum_probs=120.8

Q ss_pred             ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       178 ~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      ..+|.+...+. . .+.+|+.++|.|.+ .+ +.+.+.|+|++..        .....+.|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~~P~i~~~p~-~-~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            6 LPKPSLQALPS-S-LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             BCCCEEEEESC-S-EEETTCCEEEEEEC-ST-TCSEEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEEeCCC-c-cccCCCcEEEEEeC-CC-CCCEEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEc
Confidence            34566666655 2 68899999999998 44 7789999998875        123367899999999999999999999


Q ss_pred             CCCc--eEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEE
Q psy17058        258 SAGK--EVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI  332 (471)
Q Consensus       258 ~~~~--~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i  332 (471)
                      ..+.  .+..+.|.|..   +|.+...+  ...+.+|+++.|.|.+.+.| +.+.|++++..+.....  .......|.|
T Consensus        74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~--~~~~~~~L~i  148 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP--ERWYRASFPI  148 (184)
T ss_dssp             TTEEBCCCCCEEEEEESSSCCCEEEEEC--CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC--CEEEEESSSE
T ss_pred             CCCccCCCCCEEEEecCcCCCCEEEeCC--CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec--CCCceEEEEE
Confidence            7653  34456677753   44455544  23577999999999987554 69999999987754221  2345678999


Q ss_pred             eecCCCCCeEEEEEEEcCCC
Q psy17058        333 ASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .+++.+|+|.|+|.|.|..+
T Consensus       149 ~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          149 ITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEETTCCSEEEEEEEECTTS
T ss_pred             ccCCccCCeEEEEEEEeCCC
Confidence            99999999999999999864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.85  E-value=5.5e-21  Score=161.51  Aligned_cols=168  Identities=18%  Similarity=0.290  Sum_probs=126.3

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+.. ..+.+|+.++|.|.+ .+.+. ..+.|++++..+..        ....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPW-NRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSC-SEEETTCCEEEECCT-TCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCC-cceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC--------CceEEEEeccceecCEEEEEEcCC
Confidence            45666666543 578899999999999 55555 47999998876332        267899999999999999999987


Q ss_pred             CCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC
Q psy17058        258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR  336 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~  336 (471)
                      ..+  +..+.|.|..++.....+  ...+.+|+.+.|.|.+. +.|.+.+.|++++..+..      ......|.|.+++
T Consensus        73 ~~~--s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~L~i~~v~  142 (176)
T 1f2q_A           73 VNE--SEPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY------WYENHNISITNAT  142 (176)
T ss_dssp             SSC--CCCEEEEEECSSEEEEES--CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS------CCCSSEEEESSCC
T ss_pred             ccc--cccEEEEEeCcceeecCC--cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee------ecCCCeEEECCCC
Confidence            554  344566776544443333  24678999999999995 566679999999987632      2345789999999


Q ss_pred             CCCCeEEEEEEEcCCC-ceEEEEEEEEecCC
Q psy17058        337 ESDAGQYKCIGKNSAG-TEEKVITVAVEHRP  366 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p  366 (471)
                      .+|+|.|+|.|.|..+ ..+..+.|.|..+|
T Consensus       143 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          143 VEDSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             cccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            9999999999999744 34556889998775

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=1.4e-20  Score=168.31  Aligned_cols=215  Identities=13%  Similarity=0.156  Sum_probs=125.4

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCC--------CcccCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPP--------NMIAGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..+|.|...|. ..+.+|++|+|.|....+.+.+.|+|+ +..+..        .......|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~~~~~~~W~k~-g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDVRFQHFLLHRE-GKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESSCCSEEEEEEE-STTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCCCCcEEEEEEC-CCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            35788888776 679999999999993345678999999 443321        11145789999999999999999998


Q ss_pred             ecCC----ceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---
Q psy17058        161 NAQG----NVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---  232 (471)
Q Consensus       161 ~~~~----~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---  232 (471)
                      +...    ...+....|.|... .+|.+...+.  ..+.+|+.++|.|.+ .+. .+.+.|+|++..+.........   
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~--~~V~~G~~vtL~C~~-~~~-~~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG--PTVLAGESVTLSCSS-RSS-YDMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC--TTCBTTCEEEEEEEC-SSC-CSEEEEEETTSSCEECCBCBCCSSS
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC--CccCCCCEEEEEEeC-CCC-CcEEEEEECCcccCcccccccccCC
Confidence            6432    11344456666532 3455555443  357899999999998 443 4689999999875433211111   


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCC-----ceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEE
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS  307 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~  307 (471)
                      .....|.|.+++  |+|.|+|.+.+...     ..+..+.|.|...|.+...+........|..+.|.|.+ |.+.+.+.
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~  235 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEE  235 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------
T ss_pred             ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHH
Confidence            125679999998  99999999997532     24556788888877665222212245679999999776 46777888


Q ss_pred             EEeCC
Q psy17058        308 WVKYI  312 (471)
Q Consensus       308 W~~~~  312 (471)
                      |...+
T Consensus       236 ~~~~~  240 (257)
T 1b6u_A          236 DLNLD  240 (257)
T ss_dssp             -----
T ss_pred             Hhhhh
Confidence            87543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.85  E-value=9.6e-21  Score=159.03  Aligned_cols=165  Identities=18%  Similarity=0.284  Sum_probs=124.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      +++|.+.+.|....+.+|+++.|.|. .+.| .+.+.|+++ +..+...   ...+.|.+++.+|+|.|+|.+.+.... 
T Consensus         2 ~p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~-g~~~~~~---~~~~~~~~~~~~d~G~Y~C~~~~~~~s-   76 (170)
T 3ry4_A            2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN-GNLIPTH---TQPSYRFKANNNDSGEYTCQTGQTSLS-   76 (170)
T ss_dssp             CCBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEET-TEECTTC---CSSEEEEECCGGGCEEEEEEETTSBCC-
T ss_pred             CCCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEEC-CeEcccC---ccceEEEecccccCeEEEEEEeCCCce-
Confidence            35688889998889999999999999 6655 679999998 6555442   456788899999999999999875433 


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCC
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG  246 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  246 (471)
                        ....+.|.  .++.+...+  ...+.+|+.++|.|.+..+.|.+.+.|++++..+..      ......|.|.+++.+
T Consensus        77 --~~~~l~v~--~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~L~i~~v~~~  144 (170)
T 3ry4_A           77 --DPVHLTVL--FEWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF------SHLDPTFSIPQANHS  144 (170)
T ss_dssp             --CCEEEEEE--CCSEEEECS--CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE------ESSCCEEEESSCCGG
T ss_pred             --EeEEEEEE--CCceEecCC--CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc------cCCCCeEEEEecccc
Confidence              33444544  445443333  346789999999999966667789999998875321      223567999999999


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEE
Q psy17058        247 DEGKYTCIAENSAGK-EVMNAYIHV  270 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~-~~~~~~l~V  270 (471)
                      |+|.|+|.+.|..+. .+..+.|.|
T Consensus       145 d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          145 HSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999998875 344455544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.85  E-value=3.7e-20  Score=161.82  Aligned_cols=175  Identities=19%  Similarity=0.356  Sum_probs=127.0

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCC---eEEEEeCCCCCCcCC------------------CceEE-----eeeceEEEe
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSP---TQTWIRPDNDGKFGP------------------DVEVY-----QELGVLRFN  241 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~---~v~W~~~~~~~~~~~------------------~~~~~-----~~~~~l~i~  241 (471)
                      +..+.+.+|++++|.|.+ .+.|.+   .++|+|++..+....                  ++.+.     ....+|.|.
T Consensus         6 p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            445678899999999999 566554   489999886543211                  11110     113469999


Q ss_pred             ccCCCCCeEEEEEEEcCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc
Q psy17058        242 NIATGDEGKYTCIAENSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE  320 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~  320 (471)
                      +++.+|+|.|.|.+.+..+.. .....+.+..++...........+..|+.+.+.|.+.|.|.|.+.|++++..+.....
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~  164 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRS  164 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCce
Confidence            999999999999998866543 3344455555554444444456778899999999999999999999999887653322


Q ss_pred             c---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        321 R---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       321 ~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .   ......+.|.|..+..+|+|.|+|.|.|+.|..+..+.+.|.
T Consensus       165 ~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          165 FKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             EecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            1   112235689999999999999999999999988766666554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=1.9e-20  Score=159.95  Aligned_cols=176  Identities=15%  Similarity=0.142  Sum_probs=126.4

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+..  .+.+|+.++|.|.+ .+ +...+.|+|++..+... ...........|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~--~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            3 PKPFIWAEPHF--MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeecCC--cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            35666666553  68899999999998 33 45789999998753321 1111122356799999999999999999988


Q ss_pred             CCCc--eEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEE
Q psy17058        258 SAGK--EVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI  332 (471)
Q Consensus       258 ~~~~--~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i  332 (471)
                      ..+.  .+..+.|.|..   +|.+...+  ...+.+|++++|.|.+.+ +.+.+.|+|++..+....  ........|.|
T Consensus        79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~--~~~~~~~~L~I  153 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR--GYGKVQAEFPL  153 (188)
T ss_dssp             TTEECCCCCCEEEEEESCSCCCEEEEES--CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE--EECSSEEEEEE
T ss_pred             CCCCCCCCCceEEEecccCCCCeEEECC--CCccccCCEEEEEEEcCC-CCCEEEEEECCccccccc--cCCCceeEEEE
Confidence            6442  34556777764   45555444  246789999999999875 456999999998765321  23456789999


Q ss_pred             eecCCCCCeEEEEEEEcCCC---ceEEEEEEEEe
Q psy17058        333 ASVRESDAGQYKCIGKNSAG---TEEKVITVAVE  363 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~V~  363 (471)
                      .+++.+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       154 ~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          154 GPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            99999999999999998652   23445666664

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.84  E-value=3.3e-20  Score=155.73  Aligned_cols=163  Identities=20%  Similarity=0.304  Sum_probs=123.7

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      .|.+.+.+. ...+.+|+.++|.|.+ .+.| .+.+.|++++..+...        ...+.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~p~i~~~p~-~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            4 KAVLKLEPP-WINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             BCEEEEESC-CSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEETTS
T ss_pred             CCEEEeCCC-CeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEeCC
Confidence            345555544 3468899999999999 5555 6799999998764432        345677889999999999999864


Q ss_pred             CCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCC
Q psy17058        259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE  337 (471)
Q Consensus       259 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  337 (471)
                      .  .+..+.|.|..++.+...+  ...+.+|+.+.|.|.+.+ .|.+.+.|++++..+..      ......|.|.+++.
T Consensus        74 ~--~s~~~~l~v~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~L~i~~v~~  143 (170)
T 3ry4_A           74 S--LSDPVHLTVLFEWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF------SHLDPTFSIPQANH  143 (170)
T ss_dssp             B--CCCCEEEEEECCSEEEECS--CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE------ESSCCEEEESSCCG
T ss_pred             C--ceEeEEEEEECCceEecCC--CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc------cCCCCeEEEEeccc
Confidence            3  3345677887766554443  346889999999999954 56689999999877532      23456899999999


Q ss_pred             CCCeEEEEEEEcCCCc-eEEEEEEEE
Q psy17058        338 SDAGQYKCIGKNSAGT-EEKVITVAV  362 (471)
Q Consensus       338 ~d~G~Y~C~a~n~~g~-~~~~~~l~V  362 (471)
                      +|+|.|+|.|.|..|. .+..+.|.|
T Consensus       144 ~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          144 SHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCEEEEEEEEeCcCccccccEEEEE
Confidence            9999999999999986 355566665

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.84  E-value=2.8e-20  Score=158.36  Aligned_cols=159  Identities=16%  Similarity=0.213  Sum_probs=124.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------CCCceEEe-----eeceEEEeccCCCCCeE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQ-----ELGVLRFNNIATGDEGK  250 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~-----~~~~l~i~~~~~~d~G~  250 (471)
                      ...+.+|+.++|.|.+ .+.|.+.+.|++++.....              ..+.....     ....|.|.+++.+|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            3467899999999999 5788899999998864221              11222211     13359999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEE
Q psy17058        251 YTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY  330 (471)
Q Consensus       251 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l  330 (471)
                      |+|.+.+..    ..+.|.|..   +...+  ...+.+|+++.|.|.+.+.|.+.+.|++++..+        ......|
T Consensus        83 Y~C~~~~~~----~~~~l~V~~---~~~~~--~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~L  145 (184)
T 2ny1_B           83 YICEVEDQK----EEVQLLVFG---LTANS--DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGKTL  145 (184)
T ss_dssp             EEEEETTEE----EEEEEEEEE---EEESS--CSEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------EEESSEE
T ss_pred             EEEEEEcCC----CcEEEEEEE---ecCCC--CceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------ccCceEE
Confidence            999997653    355566653   22222  347789999999999999999999999987654        2356789


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       331 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .|.+++.+|+|.|+|.|.|..+..+..+.|.|.+.|
T Consensus       146 ~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          146 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            999999999999999999999999999999998875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.84  E-value=1.9e-20  Score=167.72  Aligned_cols=175  Identities=14%  Similarity=0.203  Sum_probs=122.8

Q ss_pred             EEEcCCceeecCCCcEEEEee-CC---CCCCeEEEEeCCCCC-------------------------------CCCCcc-
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SN---DPSATIKWSKDNQEQ-------------------------------LPPNMI-  137 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~---~p~~~v~W~~~~~~~-------------------------------~~~~~~-  137 (471)
                      +...+..+.+.+|++++|.|. .+   .+.+.+.|++++...                               ...+.. 
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            444456788999999999999 54   778899999984321                               001111 


Q ss_pred             ---cCcEEEEcCCCCCCCeEEEEEEEecCCce----eeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCC
Q psy17058        138 ---AGETLIINGITKADEGVYICSIQNAQGNV----FQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGE  209 (471)
Q Consensus       138 ---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~----~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~  209 (471)
                         ....|.|.+++.+|+|.|+|.+.+..+..    ......|.|... .+|.+.+.......+.+|+.++|.|.+ .+.
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~g~  163 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDC  163 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE-ESC
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe-cCC
Confidence               13589999999999999999999876641    123455555432 134555555555566789999999999 777


Q ss_pred             CCCeEEEEeCCCCCCcCCC----------------------ceEE-eeeceEEEeccCCCCCeEEEEEEEcCCCc---eE
Q psy17058        210 PSPTQTWIRPDNDGKFGPD----------------------VEVY-QELGVLRFNNIATGDEGKYTCIAENSAGK---EV  263 (471)
Q Consensus       210 p~~~v~W~~~~~~~~~~~~----------------------~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~  263 (471)
                      |.+.+.|++++..+.....                      .... .....|.|.+++.+|+|.|+|.|.|..|.   ..
T Consensus       164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~  243 (250)
T 2fbo_J          164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR  243 (250)
T ss_dssp             TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred             CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence            8889999999876544221                      1111 12368999999999999999999996554   44


Q ss_pred             EEEEEE
Q psy17058        264 MNAYIH  269 (471)
Q Consensus       264 ~~~~l~  269 (471)
                      .++.|.
T Consensus       244 ~~~~l~  249 (250)
T 2fbo_J          244 SSTILK  249 (250)
T ss_dssp             EEEEEE
T ss_pred             eeEEEe
Confidence            444443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=4.9e-20  Score=163.60  Aligned_cols=176  Identities=15%  Similarity=0.236  Sum_probs=126.4

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC----C--CcccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP----P--NMIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~----~--~~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ..+|.|.+.|.. .+.+|++|+|.|....+...+.|+|+ +..+.    .  .......|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEET-TEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCCCCcEEEEEEC-CCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            467889999877 89999999999994345578999999 43321    1  1114568999999999999999999875


Q ss_pred             CCc-eeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEE
Q psy17058        163 QGN-VFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF  240 (471)
Q Consensus       163 ~~~-~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i  240 (471)
                      .+. ..+....|.|... ..|.+...+  ...+.+|+.++|.|.+ .+ +.+.+.|+|++..+..  ..........|.|
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p--~~~v~~G~~vtL~C~~-~~-~~~~~~w~k~g~~~~~--~~~~~~~~~~l~I  156 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHV--QRGYGKVQAEFPL  156 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEES--CSEEETTCEEEEEEEC-TT-SCSEEEEEECSSSCEE--EEEECSSEEEEEE
T ss_pred             CccccCCcceEEEeecccCCCceEccC--CCccCCCCcEEEEEec-CC-CCCEEEEEECCCccCc--cccCCCceEEEEe
Confidence            332 1233455556532 246555544  2368899999999998 33 3469999999876443  1112233568999


Q ss_pred             eccCCCCCeEEEEEEEcCC---CceEEEEEEEEEe
Q psy17058        241 NNIATGDEGKYTCIAENSA---GKEVMNAYIHVLT  272 (471)
Q Consensus       241 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~V~~  272 (471)
                      .+++.+|+|.|+|.+.|..   ...+..+.|.|..
T Consensus       157 ~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          157 GPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             EECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9999999999999998864   2345567777775

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.84  E-value=9.9e-20  Score=160.48  Aligned_cols=175  Identities=21%  Similarity=0.281  Sum_probs=117.5

Q ss_pred             CCCceeEEcCCeEEEEEEccCCCCC---CeEEEEeCCCCCCc-----------------CCCceEE-----eeeceEEEe
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGEPS---PTQTWIRPDNDGKF-----------------GPDVEVY-----QELGVLRFN  241 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~p~---~~v~W~~~~~~~~~-----------------~~~~~~~-----~~~~~l~i~  241 (471)
                      |...+.+.+|++++|.|.+ .+.+.   ..++|+|++.....                 ..+....     .....|.|.
T Consensus        10 P~~pV~v~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   88 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHL-FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIH   88 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEES
T ss_pred             CCCCEEEEcCCcEEEEEEE-ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEe
Confidence            3445678899999999998 44433   37999998754210                 0111111     113479999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCcc-CCCcc
Q psy17058        242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAP-FDRNL  319 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~-~~~~~  319 (471)
                      +++.+|+|.|+|.+.|..+.....+.+.+...+...   .....+.+|+.+.|.|.+.| .|.|.++|++++.. +....
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~---~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~  165 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDL---HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE  165 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCC---EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred             eCchHHCeeEEEEEECCCcEEEEEEEEeeccceecc---cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence            999999999999999987766665555554332221   22346778999999999988 59999999996544 33221


Q ss_pred             ccccc---CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        320 ERDEL---TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       320 ~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .....   .....+.+..++.+|+|.|+|.|.|..|..++++.|.|.++
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            11111   11234455567889999999999999999999999988653

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.84  E-value=6.5e-20  Score=166.10  Aligned_cols=193  Identities=17%  Similarity=0.293  Sum_probs=121.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-C---CCCCCeEEEEeCCCCCCCC-------------------Cc-------ccCc
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-S---NDPSATIKWSKDNQEQLPP-------------------NM-------IAGE  140 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~---~~p~~~v~W~~~~~~~~~~-------------------~~-------~~~~  140 (471)
                      .+.+.+.|..+.+.+|++++|.|. .   +.+.+.+.|+++++.....                   +.       ..+.
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            356677788899999999999999 4   5677789999974322111                   11       1237


Q ss_pred             EEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc--cCCCCCCeEEEEe
Q psy17058        141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL--EAGEPSPTQTWIR  218 (471)
Q Consensus       141 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~--~~~~p~~~v~W~~  218 (471)
                      +|.|.+++.+|+|.|+|.+.+..+. ......+.|.+..      ..+....+.+|+.++|.|.+  ..+.|.+.+.|++
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNES-MVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCC-CEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCc-ceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence            8999999999999999999987554 3333444444321      12234568899999999998  3566889999999


Q ss_pred             CCCCCCc----------------------CCCceE----EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        219 PDNDGKF----------------------GPDVEV----YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       219 ~~~~~~~----------------------~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                      ++.....                      ..+..+    ......|.|.+++.+|+|.|+|.|.|..+.....+.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             ECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence            5443111                      011111    12256799999999999999999999888888889999854


Q ss_pred             C-CceeeCCCccEEecCCCc
Q psy17058        273 L-PAVTITPSEYVSVRPGEP  291 (471)
Q Consensus       273 ~-p~~~~~~~~~~~~~~g~~  291 (471)
                      . |.+.+.| ....+.+|+.
T Consensus       238 ~~p~~~~~p-~~~~~~~~q~  256 (268)
T 3mj6_A          238 DEFQRTISP-TPPTDKGQQG  256 (268)
T ss_dssp             C-------------------
T ss_pred             CCCeeeeCC-CCCCCCccee
Confidence            4 4444443 3344444443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.84  E-value=2.9e-20  Score=168.47  Aligned_cols=170  Identities=19%  Similarity=0.336  Sum_probs=122.6

Q ss_pred             ceeEEcCCeEEEEEEccC--CCCCCeEEEEeCCCCCCcC------------------CCceEE----eeeceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEA--GEPSPTQTWIRPDNDGKFG------------------PDVEVY----QELGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~--~~p~~~v~W~~~~~~~~~~------------------~~~~~~----~~~~~l~i~~~~~  245 (471)
                      ...+.+|+.++|.|.+..  +.+.+.+.|++++......                  .+..+.    ..+..|.|.+++.
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   93 (268)
T 3mj6_A           14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK   93 (268)
T ss_dssp             EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred             ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence            457889999999999831  4666789999976542211                  222221    1126799999999


Q ss_pred             CCCeEEEEEEEcCCCce--EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE---eecCCCeEEEEeCCccC-CCcc
Q psy17058        246 GDEGKYTCIAENSAGKE--VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA---TGRPMPTVSWVKYIAPF-DRNL  319 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~~--~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~i~W~~~~~~~-~~~~  319 (471)
                      +|+|.|+|.+.+..+..  ...+.|.|.  +.    .+....+.+|+++.|.|.+   .+.|.+.+.|++++... ....
T Consensus        94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~----~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~  167 (268)
T 3mj6_A           94 ADEGIYTCEIRLKNESMVMKKPVELWVL--PE----EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET  167 (268)
T ss_dssp             GGCEEEEEEEEETTCCCEEEEEEEEEEE--CC----CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEE
T ss_pred             hHCEEEEEEEEecCCcceEEEEEEEEEe--cc----CCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCccee
Confidence            99999999999876554  344555553  21    2235678899999999999   56688899999953321 1000


Q ss_pred             -------------------------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        320 -------------------------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       320 -------------------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                                               .........+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          168 VLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             EEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence                                     0001234678999999999999999999999999999999999765

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=5.7e-20  Score=164.39  Aligned_cols=216  Identities=16%  Similarity=0.207  Sum_probs=125.5

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC---CceEEeeeceEEEeccCCCCCeEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP---DVEVYQELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      .+|.+...+.  ..+.+|+.++|.|.+ . .+...+.|+|++..+....   ..........|.|.+++.+|+|.|+|.+
T Consensus         6 ~kP~i~~~P~--~~V~~G~~VtL~C~~-~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            6 RKPSLLAHPG--PLVKSEETVILQCWS-D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCCEECCBSC--SEEESSCCEEEEEEE-S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCCEEEEcCC--CEecCCCCEEEEEec-C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            3455555443  468899999999998 3 3567999999988643111   0001122567999999999999999999


Q ss_pred             EcCCC-----ceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc---cc
Q psy17058        256 ENSAG-----KEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD---EL  324 (471)
Q Consensus       256 ~~~~~-----~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---~~  324 (471)
                      .+...     ..+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+.+. .+.|.|+|++..+.......   ..
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~--~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG--PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC--TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSS
T ss_pred             eccCCCccccccCCCEEEecccCCCCcceEccCC--CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCC
Confidence            86421     235567777775   345555443  257899999999999865 46999999998765322111   11


Q ss_pred             CceeEEEEeecCCCCCeEEEEEEEcCCC-----ceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEE
Q psy17058        325 TSRAVYTIASVRESDAGQYKCIGKNSAG-----TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYA  399 (471)
Q Consensus       325 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  399 (471)
                      .....|.|.+++  |+|.|+|.|.|..+     ..+..+.|.|.+.|                                 
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p---------------------------------  203 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP---------------------------------  203 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------
T ss_pred             ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC---------------------------------
Confidence            246899999998  99999999997632     23555788888764                                 


Q ss_pred             cCCcceEEeeecCCeeEE-cCCeeeeeCCCeEEEEEEecccCCceEEEecCCC
Q psy17058        400 VGSNASISCSVEPPRITL-RPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG  451 (471)
Q Consensus       400 ~~~~~~y~c~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~  451 (471)
                                    .+.. .+.......|..+.|.|.+ |.+.+.+.|..-+-
T Consensus       204 --------------~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          204 --------------SNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLDL  241 (257)
T ss_dssp             -----------------------------------------------------
T ss_pred             --------------CCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence                          2221 1112334568899999877 88889999987654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.84  E-value=1.4e-19  Score=154.09  Aligned_cols=155  Identities=20%  Similarity=0.330  Sum_probs=120.1

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc--------cCcEEEEcCCCCCCCeEE
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI--------AGETLIINGITKADEGVY  155 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~--------~~~~L~i~~v~~~D~G~Y  155 (471)
                      .+.+.+|++++|.|. .+.|.+.+.|++++...+               ..+..        ...+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            567899999999999 778889999999943211               11111        245699999999999999


Q ss_pred             EEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee
Q psy17058        156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL  235 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  235 (471)
                      +|.+.+..+     ...+.|..     +..  .....+.+|+.++|.|.+ .+.|.+.+.|++++..+        ....
T Consensus        84 ~C~~~~~~~-----~~~l~V~~-----~~~--~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~--------~~~~  142 (184)
T 2ny1_B           84 ICEVEDQKE-----EVQLLVFG-----LTA--NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN--------IQGG  142 (184)
T ss_dssp             EEEETTEEE-----EEEEEEEE-----EEE--SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCE--------EEES
T ss_pred             EEEEEcCCC-----cEEEEEEE-----ecC--CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCcc--------ccCc
Confidence            999987532     34455541     122  223467899999999999 66799999999987652        2346


Q ss_pred             ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCc
Q psy17058        236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       236 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~  275 (471)
                      ..|.|.+++.+|+|.|+|.+.|..+..+..+.|.|...|.
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            7899999999999999999999888888889999887664

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.83  E-value=3.6e-19  Score=156.35  Aligned_cols=177  Identities=15%  Similarity=0.246  Sum_probs=122.2

Q ss_pred             CCCceeEEcCCeEEEEEEccCCCC-----CCeEEEEeCCCCC---------------CcCCCceEEe-----eeceEEEe
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGEP-----SPTQTWIRPDNDG---------------KFGPDVEVYQ-----ELGVLRFN  241 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~p-----~~~v~W~~~~~~~---------------~~~~~~~~~~-----~~~~l~i~  241 (471)
                      +.....+.+|+.++|.|.+ .+.|     ...+.|+|++..+               ....+..+..     ....|.|.
T Consensus         7 p~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            3344567899999999998 4444     3489999974110               0112222221     13479999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCccc
Q psy17058        242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRNLE  320 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~  320 (471)
                      +++.+|+|.|+|.+.+ .+.....+.|.|..++...... ....+.+|+.+.|.|.+.|+|.|.+.|+++ +..+.....
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~-~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQR-ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEE-EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCce-eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc
Confidence            9999999999999998 5666777888888665432211 112567899999999999999999999998 554433211


Q ss_pred             c-cccCcee---EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        321 R-DELTSRA---VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       321 ~-~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      . .......   ...+..+..+|.|.|+|.|.|..|....++.|.|...|
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            1 1111111   22233456789999999999999999999999998765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.83  E-value=2.1e-20  Score=157.76  Aligned_cols=156  Identities=15%  Similarity=0.153  Sum_probs=116.1

Q ss_pred             eeEEcCCeEEEEEEccC-CCCCCeEEEEeCCCCC----------CcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        191 QTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDG----------KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~-~~p~~~v~W~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      +.+.+|+.++|.|.... ..+.+.+.|+|++..+          ....++.+.. ++.|.|.+++.+|+|.|+|.+.|..
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~-~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-NGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT-TSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECC-CCcEEEcccccccCEEEEEEEEeCC
Confidence            35679999999995412 2556789999988432          1233444433 5669999999999999999999988


Q ss_pred             Cce--EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCC
Q psy17058        260 GKE--VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE  337 (471)
Q Consensus       260 ~~~--~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  337 (471)
                      +..  +..+.|.|..++..   |  .+ ...+..+.|.|.+.|.|.|.+.|++++..+....         .+.|..+..
T Consensus        85 g~~~~~~~~~l~V~~~~~~---p--~i-~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~---------~~~i~~~~~  149 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSK---P--MI-YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR---------QKTMSYQWT  149 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCC---C--EE-EEETTTTEEEEECSSCSSCEEEEEETTEEEEEES---------SSEEEEECS
T ss_pred             CCEEEEEEEEEEEeCCCCC---C--EE-EecCCcEEEEEEecCCCCcEEEEEECCEECCCCC---------cEEEEEEEc
Confidence            876  66677888764321   1  11 1235569999999999999999999987764221         145667889


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        338 SDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       338 ~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      +|+|.|+|.|.|..|..+....|.+
T Consensus       150 ~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          150 NLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             cCCeEEEEEEEecCCCceecccccC
Confidence            9999999999999999888876654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.83  E-value=5.5e-20  Score=165.20  Aligned_cols=201  Identities=19%  Similarity=0.310  Sum_probs=119.4

Q ss_pred             eEEEEecCcEEEEEEeeeCCccEEEeccchhhhheeeeeeeecCCCCcEEEcCCceeecCCCcEEEEee-CCCC-----C
Q psy17058         46 EVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDP-----S  119 (471)
Q Consensus        46 ~~~v~~g~~~~l~C~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-----~  119 (471)
                      ...|+.++.+.|.|.+.+   .. +..   .+..        ...++.+...|..+.+.+|++++|.|. .+.+     .
T Consensus         8 ~~~v~~~dsg~Y~C~a~g---~~-~~~---~~~~--------~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~   72 (254)
T 2c1o_A            8 AELVRPGTSVKLSCKASG---YS-FTN---YWMN--------WLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGK   72 (254)
T ss_dssp             ---------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSC
T ss_pred             cceecCCccEEEEEcCch---hh-hhh---hhhh--------eeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCC
Confidence            345889999999999871   11 000   0000        112677888888999999999999999 6666     4


Q ss_pred             CeEEEEeCC-CCCC--------------CCCcc-----cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeec-
Q psy17058        120 ATIKWSKDN-QEQL--------------PPNMI-----AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-  178 (471)
Q Consensus       120 ~~v~W~~~~-~~~~--------------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-  178 (471)
                      +.+.|+|++ +..+              ..+..     ....|.|.+++.+|+|.|+|.+.|..+........+.|... 
T Consensus        73 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~  152 (254)
T 2c1o_A           73 TYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD  152 (254)
T ss_dssp             BCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC
T ss_pred             CceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC
Confidence            899999853 2211              11111     23389999999999999999999876542333345666432 


Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcC--CCc-------eEEeeeceEEEeccCCCCC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFG--PDV-------EVYQELGVLRFNNIATGDE  248 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~--~~~-------~~~~~~~~l~i~~~~~~d~  248 (471)
                      .+|.+.+.+... ....|+.++|.|.+....|. +.++|+|++..+...  ...       ......+.|.|.++..+|+
T Consensus       153 ~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~  231 (254)
T 2c1o_A          153 AAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH  231 (254)
T ss_dssp             BCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CCCeeEeecCCh-hhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCC
Confidence            246666554433 23368899999999443454 579999998864433  000       0111245799999999999


Q ss_pred             eEEEEEEEcCCCce
Q psy17058        249 GKYTCIAENSAGKE  262 (471)
Q Consensus       249 G~Y~C~~~~~~~~~  262 (471)
                      |.|+|.|.|.....
T Consensus       232 G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          232 NSYTCEATHKTSTS  245 (254)
T ss_dssp             CEEEEEEECTTCSS
T ss_pred             CeEEEEEEcCCCCC
Confidence            99999999986553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.83  E-value=8.3e-21  Score=178.79  Aligned_cols=177  Identities=19%  Similarity=0.242  Sum_probs=137.9

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC----CcccCcEEEEcCCCCCCCe-EEEEEEEec
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP----NMIAGETLIINGITKADEG-VYICSIQNA  162 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~  162 (471)
                      ..+|.+...|....+.+|+++.|.|. .+.|.+.+.|+++++.....    .....+.|.|.+++.+|+| .|+|.+.|.
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~  235 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND  235 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence            35788999999999999999999999 78899999999995432211    1115678999999999999 999999998


Q ss_pred             CCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---------e
Q psy17058        163 QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---------Q  233 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------~  233 (471)
                      .+. ..  ..+.+.+..+|.+.     ...+.+|+.++|.|.+ .+.|.+.++|++++..+.........         .
T Consensus       236 ~g~-~~--~~~~l~V~~~P~i~-----~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  306 (347)
T 2ifg_A          236 VGR-AE--VSVQVNVSFPASVQ-----LHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV  306 (347)
T ss_dssp             TEE-CC--EEECCCCBEEEEEE-----ECCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCC
T ss_pred             CCC-EE--EEEEEEEcCCCeee-----eccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcc
Confidence            766 33  34455545556641     1134579999999999 77899999999998876543332211         1


Q ss_pred             eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCC
Q psy17058        234 ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       234 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p  274 (471)
                      ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            25679999999999999999999999999888888887654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=3e-19  Score=154.31  Aligned_cols=162  Identities=13%  Similarity=0.156  Sum_probs=116.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC--------cccCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN--------MIAGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..+|.|...|. ..+.+|++++|.|....+.+.+.|+|+ +..+...        ......|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~w~k~-g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDVMFEHFLLHRE-GMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESSCCSEEEEEEE-SSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccCCCCEEEEEEC-CCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            46788888886 779999999999993357789999999 5444211        1145789999999999999999998


Q ss_pred             ecCC----ceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--
Q psy17058        161 NAQG----NVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--  233 (471)
Q Consensus       161 ~~~~----~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--  233 (471)
                      +...    ...+....|.|... .+|.+...+.  ..+.+|+.++|.|.+ .+ +.+.+.|+|++..+..........  
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~  159 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG--PTVLAGENVTLSCSS-RS-SYDMYHLSREGEAHERRLPAGPKVNG  159 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC--SEECTTCEEEEEEEE-SS-CCSEEEEEETTCSSCEEEECEEEETT
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCC--CccCCCCeEEEEEeC-CC-CCceEEEEECCcccCcccccccccCC
Confidence            6421    11334456666532 3456655543  367899999999998 33 567999999988754322111111  


Q ss_pred             -eeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        234 -ELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       234 -~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                       ....|.|.+++  |+|.|+|.+.+.
T Consensus       160 ~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          160 TFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence             25679999998  999999999865

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.83  E-value=8.3e-20  Score=159.37  Aligned_cols=169  Identities=21%  Similarity=0.412  Sum_probs=119.4

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCC-CCC--------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-EQL--------------PPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      .+...|..+.+.+|+++.|.|. .+.|.+.+.|+|++. ..+              ..+..     ....|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            4556678889999999999999 777788999998632 111              11111     23489999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC-CC
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG-PD  228 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~-~~  228 (471)
                      +|.|+|.+.+..+........+.|.... +|.+.+.+... .+..|+.++|.|.+....|.+ .++|++++..+... ..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  161 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  161 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence            9999999998766533334466665322 56666544433 234799999999994436665 89999998764433 00


Q ss_pred             -c-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        229 -V-------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       229 -~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                       .       ......+.|.|.++..+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence             0       011124589999999999999999999986654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=1e-19  Score=161.55  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=128.8

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+..  .+.+|+.++|.|.+ .+ +...+.|+|++..+... ...........|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~kP~i~~~P~~--~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            6 PKPFIWAEPHF--MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeeCCC--ccCCCCcEEEEEee-CC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            45666666653  68899999999998 33 45689999998653211 1111112356799999999999999999987


Q ss_pred             CCCc--eEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEE
Q psy17058        258 SAGK--EVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI  332 (471)
Q Consensus       258 ~~~~--~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i  332 (471)
                      ..+.  .+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+.+. .+.+.|+|+|..+....  ........|.|
T Consensus        82 ~~~~s~~S~~~~L~V~~~~~~P~i~~~p~--~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~--~~~~~~~~l~I  156 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEMYDTPTLSVHPG--PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQR--GYGKVQAEFPL  156 (242)
T ss_dssp             TTEECCCCCCEEEEEECCSCCCEEEEESC--SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEE--EECSSEEEEEE
T ss_pred             CCccccCCcceEEEeecccCCCceEccCC--CccCCCCcEEEEEecCCC-CCEEEEEECCCccCccc--cCCCceEEEEe
Confidence            6432  34556777764   455555442  367899999999998754 46999999998765321  23456789999


Q ss_pred             eecCCCCCeEEEEEEEcCC---CceEEEEEEEEecCC
Q psy17058        333 ASVRESDAGQYKCIGKNSA---GTEEKVITVAVEHRP  366 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~p  366 (471)
                      .+++.+|+|.|+|.|.|..   ...+..+.|.|...+
T Consensus       157 ~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          157 GPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             EECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             CCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            9999999999999999864   234566888888754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.82  E-value=9.2e-20  Score=159.09  Aligned_cols=168  Identities=18%  Similarity=0.289  Sum_probs=123.4

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCC--CCC------------cCCCceEEe--eeceEEEeccCCCCCeEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DGK------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYTC  253 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~--~~~------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C  253 (471)
                      ...+.+|+.++|.|.+ .+.|.+.+.|+|...  ...            ...++.+..  ....|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (213)
T 3mj8_L            9 LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYC   87 (213)
T ss_dssp             EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEE
Confidence            5678899999999999 678889999998422  111            122333222  24469999999999999999


Q ss_pred             EEEcCCC---ceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCcc-----
Q psy17058        254 IAENSAG---KEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNL-----  319 (471)
Q Consensus       254 ~~~~~~~---~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~-----  319 (471)
                      .+.+..+   .....+.|.|.    .+|.+.+.+.. ..+.+|+.+.|.|.+.|. |+ +.+.|++++..+....     
T Consensus        88 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  166 (213)
T 3mj8_L           88 QSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPS-SEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQP  166 (213)
T ss_dssp             EEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC
T ss_pred             EeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCC-cccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCc
Confidence            9999877   34555778888    56666665432 234489999999999985 44 3999999998875321     


Q ss_pred             --cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        320 --ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       320 --~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                        ........+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus       167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          167 SKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             CccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence              1111223466999999999999999999999887766654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.82  E-value=7.3e-20  Score=161.80  Aligned_cols=174  Identities=17%  Similarity=0.362  Sum_probs=124.5

Q ss_pred             CCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCC-------------cCCCce----------EEeeeceEEEec
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGK-------------FGPDVE----------VYQELGVLRFNN  242 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~-------------~~~~~~----------~~~~~~~l~i~~  242 (471)
                      .+....+.+|+.++|.|.+ .+.+. +.+.|++++....             ...+..          +.. .+.|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L~i~~   83 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-QGRLVLAE   83 (231)
T ss_dssp             CCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-TCCEEESS
T ss_pred             CCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-CceEEEcc
Confidence            3445678899999999999 66664 8999998776522             011222          222 34599999


Q ss_pred             cCCCCCeEEEEEEEcCC-CceEEEEEEEEEeCCce---eeCCCccEEecCCCcE-EEEEEE-eecCCCeEEEEeCCccCC
Q psy17058        243 IATGDEGKYTCIAENSA-GKEVMNAYIHVLTLPAV---TITPSEYVSVRPGEPL-TLECEA-TGRPMPTVSWVKYIAPFD  316 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~-~~~~~~~~l~V~~~p~~---~~~~~~~~~~~~g~~v-~l~C~~-~g~p~~~i~W~~~~~~~~  316 (471)
                      ++.+|+|.|+|.+.+.. +.....+.|.|..+|..   ...+ ....+.+|+.+ .|.|.+ .+.|.+.+.|++++..+.
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~  162 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK-GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLE  162 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECC-SSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCC-cceeecCCCceEEEEEEeECcccCCEEEEEECCccCc
Confidence            99999999999999986 77788889999877542   2222 23456789988 999999 889999999999998876


Q ss_pred             Ccc----cccc-----------cCceeEEEEeecCCCCCeEEEEEEEc-----CCCc-eEEEEEEEEe
Q psy17058        317 RNL----ERDE-----------LTSRAVYTIASVRESDAGQYKCIGKN-----SAGT-EEKVITVAVE  363 (471)
Q Consensus       317 ~~~----~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~V~  363 (471)
                      ...    ....           ....+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|.|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          163 VPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             CCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred             cccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence            433    1000           00126688886666679999999999     4444 4455555553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.82  E-value=2.4e-20  Score=158.98  Aligned_cols=145  Identities=15%  Similarity=0.273  Sum_probs=108.8

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEec-cCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN-IATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ...+|+.++|.|.+ .+ + +.++|+|++..+...       .++.|.|.+ ++.+|+|.|+|.+.|..+.....+.+.|
T Consensus        10 v~~~G~~v~L~C~~-~~-~-~~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPL-DS-D-ENLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSS-CC-C-TTCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EEeCCcEEEEEEeC-CC-C-CceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            45689999999998 44 3 349999998764432       256799999 9999999999999998887655555554


Q ss_pred             EeCCceee--------------------CC-Ccc---EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCc
Q psy17058        271 LTLPAVTI--------------------TP-SEY---VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS  326 (471)
Q Consensus       271 ~~~p~~~~--------------------~~-~~~---~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~  326 (471)
                      ...+....                    .+ ...   ..+.+|+++.|.|.+   |.|.+.|+|++..+....     ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~-----~~  151 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN-----AT  151 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS-----CC
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC-----CC
Confidence            32211100                    00 000   123489999999998   888999999999875322     25


Q ss_pred             eeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        327 RAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       327 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ...|.|.++..+|+|.|+|.|.|..|..
T Consensus       152 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          152 KNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            6789999999999999999999998876

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.82  E-value=1.4e-19  Score=163.69  Aligned_cols=222  Identities=15%  Similarity=0.219  Sum_probs=110.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      ...+.+|++++|.|.+ ....+..+.|.-.-..... ....    ....+.|.++..+  |.|+|++.......+..+.|
T Consensus         8 ~~~V~~G~sv~l~Cs~-~c~~p~~~~~~t~l~~~~~~~~g~----~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l   80 (291)
T 1mq8_A            8 KVILPRGGSVLVTCST-SCDQPKLLGIETPLPKKELLLPGN----NRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFL   80 (291)
T ss_dssp             EEEECTTCEEEEEEEE-CCSSCSEEEEECSSCCCCCCCSCS----SEEEEEEESCCSC--CCCEEEEECSSCEEEEECEE
T ss_pred             ccEEcCCCeEEEEEeC-CCCCCccceEEecCCCcccccCCC----ceEEEEEEecccC--CeEEEEEEcCCccEEEEEEE
Confidence            4468899999999999 4333335888632111011 1100    1224788888743  46999997665556777889


Q ss_pred             EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC--eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP--TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       269 ~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .|..+|...........+.+|+.++|+|.+.| .|..  +|+|+|+++.+...... ......+|.+.....+|.+.|+|
T Consensus        81 ~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-~~~~~~~l~~~~~~~D~g~~~~C  159 (291)
T 1mq8_A           81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHGANFSC  159 (291)
T ss_dssp             EECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-BTTEEEEEECCCSSSCSSCEEEE
T ss_pred             EEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-CCCceEEEEeeeeeccCCceEEE
Confidence            99887764433222235889999999999987 4544  58999999887543321 22345677777777888889999


Q ss_pred             EEEcCCCc--------eEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEE
Q psy17058        346 IGKNSAGT--------EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITL  417 (471)
Q Consensus       346 ~a~n~~g~--------~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~  417 (471)
                      +|.|..+.        .+....|.|...|.                                           ..+.+..
T Consensus       160 ~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~-------------------------------------------~~~~~~~  196 (291)
T 1mq8_A          160 RTELDLRPQGLELFENTSAPYQLQTFVLPA-------------------------------------------TPPQLVS  196 (291)
T ss_dssp             EEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------------
T ss_pred             EEEecCCccCCccccccccceEEEEEecCC-------------------------------------------CCceecC
Confidence            99997663        24446777776641                                           0123322


Q ss_pred             cCCeeeeeCCCeEEEEEEecccCCc---eEEEecCCCCCCCceEEecCeEE
Q psy17058        418 RPVRQTVKPGDIANIRCSAIGATPI---SIRWQPLQGYFPSHVVEYNGELR  465 (471)
Q Consensus       418 ~~~~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~g~~l~~~~~~~~~~l~  465 (471)
                       +  ..+.+|+.+.|+|.+.|+|++   .|+|++||+.+..+...+++.+.
T Consensus       197 -p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g~~~~  244 (291)
T 1mq8_A          197 -P--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS  244 (291)
T ss_dssp             ---------------------------------------------------
T ss_pred             -C--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecCCeEE
Confidence             2  367899999999999998665   69999999999865443444443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.81  E-value=1.4e-19  Score=157.98  Aligned_cols=170  Identities=16%  Similarity=0.207  Sum_probs=120.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------CCCceEEee--eceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQE--LGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~--~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|+|++.....              ..++.+...  ...|.|.+++.+|+|.|+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            9 ATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            45578899999999999 6777889999986532111              134443322  237999999999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-cc---c-
Q psy17058        253 CIAENSAGKE-VMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-LE---R-  321 (471)
Q Consensus       253 C~~~~~~~~~-~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-~~---~-  321 (471)
                      |.+.|..+.. .....|.|..   +|.+.+.+... ....|+.+.|.|.+.| .|.+ .+.|++++..+... ..   . 
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  166 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  166 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCC
T ss_pred             EeeecCCcceeCCCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCc
Confidence            9999876643 2234566654   56665543322 2346889999999988 6665 89999999877543 11   0 


Q ss_pred             ----cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        322 ----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       322 ----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                          ......+.|.|.++..+|+|.|+|.|.|..........+
T Consensus       167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          167 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             cCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence                011124589999999999999999999988775444443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.81  E-value=2.4e-19  Score=156.05  Aligned_cols=167  Identities=18%  Similarity=0.373  Sum_probs=116.6

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCC-CCC--------------CCCcc-----cCcEEEEcCCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-EQL--------------PPNMI-----AGETLIINGITKADE  152 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~i~~v~~~D~  152 (471)
                      |.. |..+.+.+|++++|.|. .+.+.+.+.|++++. ..+              ..+..     ....|.|.+++.+|+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence            444 78889999999999999 777778999999631 111              11111     234899999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcC-C--
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFG-P--  227 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~-~--  227 (471)
                      |.|.|.+.+..+........+.|... .+|.+.+.+... .+.+|+.++|.|.+....|. ..++|+|++..+... .  
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  161 (210)
T 1lk3_L           83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS  161 (210)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE
T ss_pred             eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc
Confidence            99999999876542333445666532 246666554433 23479999999999443555 489999998765433 0  


Q ss_pred             -Cc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        228 -DV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       228 -~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                       ..     ......+.|.|.++..+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          162 VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence             00     011113479999999999999999999976543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.81  E-value=6.3e-20  Score=160.14  Aligned_cols=173  Identities=18%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCC-CCC--------------CCCcc-----cCcEEEEcCCCCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-EQL--------------PPNMI-----AGETLIINGITKA  150 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~i~~v~~~  150 (471)
                      +.+...| .+.+.+|++++|.|. .+.+.+.+.|+|... ...              ..+..     ....|.|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            3455556 788999999999999 778889999999421 110              11111     3457999999999


Q ss_pred             CCeEEEEEEEecCCc--eeeeeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCc
Q psy17058        151 DEGVYICSIQNAQGN--VFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKF  225 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~--~~~~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~  225 (471)
                      |+|.|+|.+.+..+.  .......|.|...  .+|.+.+.+... .+.+|+.++|.|.+....|+ +.++|++++..+..
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSS-EELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCc-ccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            999999999998772  2444555665522  456666655433 34489999999999543454 59999999876543


Q ss_pred             CC-------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        226 GP-------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       226 ~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      ..       ........+.|.|.++..+|.|.|+|.|.|..+....++
T Consensus       160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          160 GVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             CcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            21       001112245689999999999999999999876554443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.81  E-value=7.7e-19  Score=154.74  Aligned_cols=168  Identities=16%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             CceeecCCCcEEEEee-CCCCC---CeEEEEeCCCCCC----------C--------CCc--------ccCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPS---ATIKWSKDNQEQL----------P--------PNM--------IAGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~~~~~----------~--------~~~--------~~~~~L~i~~v~  148 (471)
                      .++.+.+|++|+|.|. .+.+.   ..|.|+|++....          .        .+.        ....+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            4578999999999998 54443   3799999843211          0        000        024589999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD  228 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~  228 (471)
                      .+|+|.|+|.|.|..+. .  ...+.+.+..++..   ......+.+|+.+.|.|.+..+.|.+.++|+++++.+.....
T Consensus        92 ~~D~G~Y~C~a~n~~~~-~--~~~v~~~~~~~~~~---~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~  165 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFY-E--KALVELKVAALGSD---LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE  165 (226)
T ss_dssp             GGGCEEEEEEEEETTEE-E--EEEEEEEEEBCCCC---CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred             hHHCeeEEEEEECCCcE-E--EEEEEEeeccceec---ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence            99999999999997665 3  33444443222221   122345678999999999955579999999997765332222


Q ss_pred             c-eEEeeec---eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        229 V-EVYQELG---VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       229 ~-~~~~~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                      . .....++   .+.+..++.+|.|.|+|.|.|..+....++.|.|.+
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            1 1222222   234556788999999999999999988888888754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.81  E-value=7.7e-20  Score=155.81  Aligned_cols=147  Identities=17%  Similarity=0.329  Sum_probs=105.8

Q ss_pred             eeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcC-CCCCCCeEEEEEEEecCCceeeeeEEEEEeec
Q psy17058        101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIING-ITKADEGVYICSIQNAQGNVFQDYASIQVDKR  178 (471)
Q Consensus       101 ~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~  178 (471)
                      ..+.+|+++.|.|. .+ + +.+.|+|+ +..+...  .+.+|.|.+ ++.+|+|.|+|.|.|..+. ......+.|...
T Consensus         9 ~v~~~G~~v~L~C~~~~-~-~~i~W~k~-g~~l~~~--~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~~   82 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-D-ENLKWEKN-GQELPQK--HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGSA   82 (186)
T ss_dssp             EEEEETTEEEEECSSCC-C-TTCEEEET-TEEECSC--CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCSC
T ss_pred             EEEeCCcEEEEEEeCCC-C-CceEEEEC-CEECCCC--CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEecc
Confidence            34578999999999 55 3 35999999 6555443  356899999 9999999999999998776 444444444332


Q ss_pred             cCCeeee------------------cC-CCc---eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec
Q psy17058        179 EMPRIRI------------------HP-NAS---QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG  236 (471)
Q Consensus       179 ~~p~~~~------------------~~-~~~---~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  236 (471)
                      .++....                  .. ...   ..+.+|+.++|.|.+    |.+.++|+|++..+.....     ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~~-----~~~  153 (186)
T 1jbj_A           83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLNA-----TKN  153 (186)
T ss_dssp             CCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSSC-----CSS
T ss_pred             cccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECcccCC-----Ccc
Confidence            2221100                  00 001   123489999999987    6789999999987543222     367


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      .|.|.++..+|+|.|+|.|.|..|..
T Consensus       154 ~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          154 TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999999999999999887655

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.81  E-value=4.2e-19  Score=158.82  Aligned_cols=178  Identities=17%  Similarity=0.243  Sum_probs=120.6

Q ss_pred             eeecCCCceeEEcCCeEEEEEEccCCCCCC-----eEEEEeCCCCCCc---------------CCCceE-----Eeeece
Q psy17058        183 IRIHPNASQTFIVGDRADIQCVLEAGEPSP-----TQTWIRPDNDGKF---------------GPDVEV-----YQELGV  237 (471)
Q Consensus       183 ~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-----~v~W~~~~~~~~~---------------~~~~~~-----~~~~~~  237 (471)
                      +.+.++....+.+|+.++|.|.+ .+.|.+     .+.|++++.....               ..+..+     ......
T Consensus         5 v~v~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   83 (248)
T 3pv7_A            5 VEMMAGGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDAS   83 (248)
T ss_dssp             EECSTTSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCC
T ss_pred             EEEeCCCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEE
Confidence            33344455678899999999999 555554     4999997544211               000000     011335


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccC
Q psy17058        238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPF  315 (471)
Q Consensus       238 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~  315 (471)
                      |.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+.+.+.  ..+..|+.+.|.|.+.| .|.+ .+.|++++..+
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             EEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            99999999999999999999887778888999999888877654  24556888899999998 8988 99999999765


Q ss_pred             CCc--------------ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc--eEEEEEEEEe
Q psy17058        316 DRN--------------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT--EEKVITVAVE  363 (471)
Q Consensus       316 ~~~--------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~  363 (471)
                      ...              .........+.|.|.....+|.|.|+|.|.|..+.  .+.++.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence            321              00111223467888899999999999999999886  4556777773

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.81  E-value=7.6e-19  Score=151.74  Aligned_cols=164  Identities=16%  Similarity=0.216  Sum_probs=117.2

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---eEEeeeceEEEeccCCCCCeEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      .+|.+...+.  ..+.+|+.++|.|.+ . .+.+.+.|+|++..+......   ......+.|.|.+++.+|+|.|+|.+
T Consensus         7 ~~P~i~~~p~--~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            7 RKPSLLAHPG--PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             CCCEEEEESC--SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEEEcC--CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            4566655554  468899999999998 3 467899999998764321110   11123567999999999999999999


Q ss_pred             EcCC-----CceEEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc---cc
Q psy17058        256 ENSA-----GKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD---EL  324 (471)
Q Consensus       256 ~~~~-----~~~~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---~~  324 (471)
                      .+..     ...+..+.|.|..   +|.+...+.  ..+.+|++++|.|.+.+ +.+.+.|+|++..+.......   ..
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~  159 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG--PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNG  159 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC--SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETT
T ss_pred             ecCCCCccccCCCCCEEEEeeccCCCCceecCCC--CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCC
Confidence            8642     1234556777765   355555543  36889999999999885 567999999998765321101   11


Q ss_pred             CceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        325 TSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       325 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      .....|.|.+++  |+|.|+|.|.+..
T Consensus       160 ~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          160 TFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             ceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            236789999998  9999999999753

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=1.2e-18  Score=148.10  Aligned_cols=160  Identities=19%  Similarity=0.369  Sum_probs=117.5

Q ss_pred             eeecCCCcEEEEee-CCCCCC--eEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        101 QSAPEGSQVTIECK-SNDPSA--TIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       101 ~~v~~G~~v~l~C~-~~~p~~--~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      ..+.+|++++|.|. .+.+.+  .+.|+++ +..+.....  ....|.|.  +.+|+|.|+|.+.|..    .....|.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~-~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~----~~~~~l~V   80 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEP----MGTANIQL   80 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTT----SCEEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeC-CEEeecccccCCcEEEEEe--chhhCeEEEEEEECCc----CcEEEEEE
Confidence            45889999999999 655555  9999998 555443322  23466666  6899999999999832    23444555


Q ss_pred             eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEe---CCCCCCc---CCCceEEeee--ceEEEeccC-C
Q psy17058        176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIR---PDNDGKF---GPDVEVYQEL--GVLRFNNIA-T  245 (471)
Q Consensus       176 ~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~---~~~~~~~---~~~~~~~~~~--~~l~i~~~~-~  245 (471)
                        ..+|.+...+ ....+.+|+.++|.|.+ .+.| .+.+.|++   ++.....   ..++.+...+  ..|.|.+++ .
T Consensus        81 --~~~P~~~~~~-~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  156 (184)
T 3b5h_A           81 --HGPPRVKAVK-SSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME  156 (184)
T ss_dssp             --CCSCCCEESC-SEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred             --ecCCceeecC-CCcEEcCCCcEEEEEEE-CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence              4667666554 44568899999999999 6788 79999999   4443221   1334444322  479999999 8


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        246 GDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      +|.|.|+|.+.|..|.....+.|.|.
T Consensus       157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99999999999999988888888775

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.81  E-value=2e-19  Score=157.99  Aligned_cols=172  Identities=23%  Similarity=0.446  Sum_probs=121.5

Q ss_pred             eeEEcCCeEEEEEEccCCCCC-----CeEEEEeCCCCCC-------------cCCCceEEe-----eeceEEEeccCCCC
Q psy17058        191 QTFIVGDRADIQCVLEAGEPS-----PTQTWIRPDNDGK-------------FGPDVEVYQ-----ELGVLRFNNIATGD  247 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~-----~~v~W~~~~~~~~-------------~~~~~~~~~-----~~~~l~i~~~~~~d  247 (471)
                      ..+.+|+.++|.|.+ .+.|.     +.+.|++++....             ...+..+..     ....|.|.+++.+|
T Consensus         5 v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            5 VVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             EEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            457799999999998 44443     6899999876531             122222221     14579999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEEeC---CceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEe-CCccCCCcccc-
Q psy17058        248 EGKYTCIAENSAGKEVMNAYIHVLTL---PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVK-YIAPFDRNLER-  321 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~~~~~~~l~V~~~---p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~-~~~~~~~~~~~-  321 (471)
                      +|.|+|.+.+. +..+..+.|.|..+   |.+...+  ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+...... 
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP--NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC--CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence            99999999986 34444556666654   4444433  3367789999999999 789999999999 45544432111 


Q ss_pred             ---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        322 ---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       322 ---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                         ........|.|.++..+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       161 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          161 QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             EEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence               112223458899999999999999999999999999999999876

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.81  E-value=3.2e-19  Score=152.96  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=112.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC---c---------------CCCceEEeeeceEEEeccCCCCCeEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---F---------------GPDVEVYQELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~---~---------------~~~~~~~~~~~~l~i~~~~~~d~G~Y  251 (471)
                      ...+.+|++++|.|.+..+.+.+.+.|++++..+.   .               ..+..+. .++.|.|.+++.+|+|.|
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y   85 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QSYSLQLSNLKMEDTGSY   85 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TTCCEEECSCCGGGCEEE
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CCeEEEECCCCcccCceE
Confidence            45678999999999984334557999999864321   0               0122333 257899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEEeCCc---eeeCCCccEEecCCC-cEEEEEEEeec-CCCeEEEEeCCccCCCcccccccCc
Q psy17058        252 TCIAENSAGKEVMNAYIHVLTLPA---VTITPSEYVSVRPGE-PLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTS  326 (471)
Q Consensus       252 ~C~~~~~~~~~~~~~~l~V~~~p~---~~~~~~~~~~~~~g~-~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~  326 (471)
                      .|.+.+..+.....+.|.|..++.   +....   .....|. .+.|.|.+.|. |.+.+.|++++..+.         .
T Consensus        86 ~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~---~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~---------~  153 (193)
T 2if7_A           86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHS---QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---------S  153 (193)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCEEEEEEECC---C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE---------S
T ss_pred             EEEEEecCCCeEEEEEEEEEccCCCCeEecCc---eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC---------C
Confidence            999999887766778888876543   22221   1233465 89999999984 578999999887542         2


Q ss_pred             eeEEEEeecCCC-CCeEEEEEEEcCCCceEEEEE
Q psy17058        327 RAVYTIASVRES-DAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       327 ~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...|.|.....+ |+|.|+|.|.|..|..+..+.
T Consensus       154 ~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          154 QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            345777655554 899999999999998866543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.81  E-value=4.7e-19  Score=154.22  Aligned_cols=167  Identities=12%  Similarity=0.181  Sum_probs=117.4

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCC--CC------------CcCCCceEEee--eceEEEeccCCCCCeEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DG------------KFGPDVEVYQE--LGVLRFNNIATGDEGKY  251 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y  251 (471)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+|++.  .+            ....++.+...  ...|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            345578899999999999 677778999999642  21            11234433321  23799999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-cc---c
Q psy17058        252 TCIAENSAGKE-VMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-LE---R  321 (471)
Q Consensus       252 ~C~~~~~~~~~-~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-~~---~  321 (471)
                      .|.+.|..+.. .....|.|..   +|.+.+.+... .+..|+.+.|.|.+.| .|.+ .+.|+++|..+... ..   .
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  164 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTD  164 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred             EEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCC
Confidence            99999876543 2234566654   46565544322 2347999999999998 5554 89999999887543 11   0


Q ss_pred             c-----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        322 D-----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       322 ~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .     .....+.|.|..+..+|+|.|+|.|.|.......
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (210)
T 1lk3_L          165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV  204 (210)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred             ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence            0     1112348999999999999999999998775433

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.80  E-value=8.2e-19  Score=153.21  Aligned_cols=170  Identities=14%  Similarity=0.231  Sum_probs=119.3

Q ss_pred             CCceeecCCCcEEEEee-CCCCCC---eEEEEeCCCCCCCCC--------------------c--------ccCcEEEEc
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPPN--------------------M--------IAGETLIIN  145 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~---~v~W~~~~~~~~~~~--------------------~--------~~~~~L~i~  145 (471)
                      |+.+++.+|++++|.|. .+.+.+   .|.|+|++. .....                    .        ....+|.|.
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDA-GEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECS-SSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCC-CCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            56788999999999999 666654   489999833 22110                    0        024579999


Q ss_pred             CCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc
Q psy17058        146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF  225 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~  225 (471)
                      +++.+|+|.|.|.+.+..+........+.+.  .++...........+..|+.+.|.|.+ .+.|.+.++|++++..+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~~~~~~  161 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVL--VPPLPSLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEVKGTTS  161 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEE--BCCCCEEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESSCCEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEe--eeccceeeeeeeeeeeeccccceeeec-cCCcCceEEEEECCccccc
Confidence            9999999999999988766533333333333  223323333334456688999999999 7889999999999887543


Q ss_pred             CCCceE---EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        226 GPDVEV---YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       226 ~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      ......   ....+.|.|.++..+|+|.|+|.|.|..+.....+.+.|.
T Consensus       162 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          162 SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            322111   1124579999999999999999999998876665555543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.80  E-value=6.8e-19  Score=156.21  Aligned_cols=173  Identities=18%  Similarity=0.332  Sum_probs=121.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGIT  148 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~  148 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+.+.+.|+|++....               ..+..     ...+|.|.+++
T Consensus        23 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  102 (237)
T 3sob_L           23 ADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ  102 (237)
T ss_dssp             -CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCC
Confidence            4566777788899999999999999 777888999999521111               11111     34579999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEEee-ccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcC
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFG  226 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~  226 (471)
                      .+|+|.|+|.+.+..+........+.|.. ..+|.+.+.+... .+.+|+.++|.|.+....| .+.++|++++..+...
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCCh-hhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            99999999999886654233445566543 3456665544332 3446889999999955466 6899999998765432


Q ss_pred             C---------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        227 P---------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       227 ~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      .         ........+.|.|.....+|+|.|+|.|.|......
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            1         011112245688999999999999999999875543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=2.9e-19  Score=157.94  Aligned_cols=160  Identities=15%  Similarity=0.304  Sum_probs=113.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCC--------------CCC------------cccCcEEEEcCCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQL--------------PPN------------MIAGETLIINGIT  148 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~--------------~~~------------~~~~~~L~i~~v~  148 (471)
                      .|..+.+.+|+++.|.|. .+.+. +.+.|++++....              ..+            ....+.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            356788999999999999 66674 8999998743311              000            1123459999999


Q ss_pred             CCCCeEEEEEEEecC-CceeeeeEEEEEeeccC-CeeeecCCCceeEEcCCeE-EEEEEccCCCCCCeEEEEeCCCCCCc
Q psy17058        149 KADEGVYICSIQNAQ-GNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRA-DIQCVLEAGEPSPTQTWIRPDNDGKF  225 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~-~~~~~~~~~l~v~~~~~-p~~~~~~~~~~~v~~g~~~-~L~C~~~~~~p~~~v~W~~~~~~~~~  225 (471)
                      .+|+|.|+|.+.+.. +. ......|.|..... |.+... .....+.+|+.+ +|.|.+..+.|.+.+.|++++..+..
T Consensus        86 ~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~-~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGT-AEATARLNVFAKPEATEVSPN-KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             GGGCEEEEEEEECGGGCE-EEEEEEEEEEBCCCCCEEEEC-CSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             cccCceEEEEEEecCCCc-eEEEEEEEEEecCCCcEEecC-CcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            999999999999886 44 55556666653222 333333 333445688888 99999866789999999999887554


Q ss_pred             CC----CceEEee-----------eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        226 GP----DVEVYQE-----------LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       226 ~~----~~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      ..    +..+...           .+.|.|.....+|.|.|+|.|.|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            43    3332221           156888766666799999999994

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=1.8e-18  Score=154.57  Aligned_cols=172  Identities=17%  Similarity=0.254  Sum_probs=118.2

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCC-------------------CcCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDG-------------------KFGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~-------------------~~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.|  .+.+.|+|++...                   ....++.+..+    ...|.|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            3578899999999999 5665  5789999853210                   12234444432    3479999999


Q ss_pred             CCCCeEEEEEEEcCCCc--eEEEEEEEEEeC---------------CceeeCCCccEEecCCCcEEEEEEEeecCCCeEE
Q psy17058        245 TGDEGKYTCIAENSAGK--EVMNAYIHVLTL---------------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS  307 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~  307 (471)
                      .+|+|.|+|.+.|..+.  ....+.|.|...               +.+... .....+.+|++++|.|.+.+.|.+.+.
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQS-PATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEE-CSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEcc-CCEEEecCCCcEEEEEEeCCCccceEE
Confidence            99999999999987322  222346777643               223222 234578999999999999999888999


Q ss_pred             EEe--CCccCCC--------------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058        308 WVK--YIAPFDR--------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE  363 (471)
Q Consensus       308 W~~--~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  363 (471)
                      |++  ++..+..              ...........+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999  5554310              0111112345689999999999999999999864433 233566665

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.79  E-value=4.7e-18  Score=152.15  Aligned_cols=166  Identities=17%  Similarity=0.374  Sum_probs=113.4

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------------CCCCcc-----cCcEEEEcCCCC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------------LPPNMI-----AGETLIINGITK  149 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------------~~~~~~-----~~~~L~i~~v~~  149 (471)
                      ...+...|..+.+.+|++++|.|. .+.+.+.+.|+|+....               ...+..     ...+|.|.+++.
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            455666788889999999999999 77888899999963111               111111     233799999999


Q ss_pred             CCCeEEEEEEEecCCceeeeeEEEEEeecc----------------CCeeeecCCCceeEEcCCeEEEEEEccCCCC--C
Q psy17058        150 ADEGVYICSIQNAQGNVFQDYASIQVDKRE----------------MPRIRIHPNASQTFIVGDRADIQCVLEAGEP--S  211 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----------------~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~  211 (471)
                      +|+|.|.|.+.+..+........+.|....                .+...+..+....+.+|+.++|.|.+ .+.+  .
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~  162 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SGYAFSS  162 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CSTTGGG
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cCCcccC
Confidence            999999999998765433344556665320                11222222344568899999999999 5555  6


Q ss_pred             CeEEEEeC--CCCCCc-----------------CCCceEEee----eceEEEeccCCCCCeEEEEEEEc
Q psy17058        212 PTQTWIRP--DNDGKF-----------------GPDVEVYQE----LGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       212 ~~v~W~~~--~~~~~~-----------------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      +.+.|+|+  +..+..                 ..++.+...    ...|.|.+++.+|+|.|.|.+.+
T Consensus       163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            89999997  333211                 133333321    22699999999999999999986

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.79  E-value=1.2e-18  Score=146.89  Aligned_cols=152  Identities=13%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             ceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC------------CCCcc--cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058        100 QQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL------------PPNMI--AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~------------~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .+.+.+|++++|.|. .+  .+.+.+.|+|++ ..+            ..+..  .++.|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~-~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCC-ceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence            457899999999995 33  566789999984 211            11111  3557999999999999999999998


Q ss_pred             CCce-eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEe
Q psy17058        163 QGNV-FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN  241 (471)
Q Consensus       163 ~~~~-~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~  241 (471)
                      .+.. ......|.|.  .++.      .......+..++|.|.+ .+.|.+.+.|++++..+...         ..+.|.
T Consensus        84 ~g~~~~~~~~~l~V~--~~~~------~p~i~~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~---------~~~~i~  145 (176)
T 1hng_A           84 NGTRILNKALDLRIL--EMVS------KPMIYWECSNATLTCEV-LEGTDVELKLYQGKEHLRSL---------RQKTMS  145 (176)
T ss_dssp             TCCEEEEEEEEEEEE--CCCC------CCEEEEETTTTEEEEEC-SSCSSCEEEEEETTEEEEEE---------SSSEEE
T ss_pred             CCCEEEEEEEEEEEe--CCCC------CCEEEecCCcEEEEEEe-cCCCCcEEEEEECCEECCCC---------CcEEEE
Confidence            8872 2334444444  2211      11122345569999999 77888999999988653322         224566


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        242 NIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      .+..+|.|.|+|.|.|..|..+....|.+
T Consensus       146 ~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          146 YQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEccCCeEEEEEEEecCCCceecccccC
Confidence            78899999999999999988777665543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.79  E-value=4e-18  Score=154.98  Aligned_cols=168  Identities=18%  Similarity=0.310  Sum_probs=116.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGIT  148 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~  148 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+.+.+.|+|++....               ..+..     ...+|+|.+++
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence            4567777888999999999999999 777888999999732110               11111     22389999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEEeecc-----------CCeeeecCCCceeEEcCCeEEEEEEccCCCC--CCeEE
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----------MPRIRIHPNASQTFIVGDRADIQCVLEAGEP--SPTQT  215 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-----------~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~v~  215 (471)
                      .+|+|.|+|.+.|..+........|.|....           .|.+.+..+....+.+|+.++|.|.+ .+.+  .+.+.
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~  169 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAA-SGFTISDYWIH  169 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEE-ESSCGGGSEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEe-cCccCCCCEEE
Confidence            9999999999998754323334556665321           23333333345678899999999999 5544  58999


Q ss_pred             EEeCCC--CC-----------------CcCCCceEEee----eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        216 WIRPDN--DG-----------------KFGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       216 W~~~~~--~~-----------------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      |+|++.  ..                 ....++.+..+    ...|.|.+++.+|+|.|+|.+.|.
T Consensus       170 W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          170 WVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            999742  11                 01234444332    237999999999999999999997

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.79  E-value=4.4e-18  Score=148.47  Aligned_cols=167  Identities=19%  Similarity=0.252  Sum_probs=116.0

Q ss_pred             CCceeEEcCCeEEEEEEccCC------CCCCeEEEEeCCCCC-----------------CcCCCceEEe----eeceEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAG------EPSPTQTWIRPDNDG-----------------KFGPDVEVYQ----ELGVLRF  240 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~------~p~~~v~W~~~~~~~-----------------~~~~~~~~~~----~~~~l~i  240 (471)
                      +....+.+|+.++|.|.+...      .+.+.+.|+|++...                 ....++.+..    ....|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            345678899999999998432      256799999987531                 0112333322    1347999


Q ss_pred             eccCCCCCeEEEEEEEcCCCce----EEEEEEEEEeCC---ceeeCCCccEEecCCCcEEEEEEEeec----CCCeEEEE
Q psy17058        241 NNIATGDEGKYTCIAENSAGKE----VMNAYIHVLTLP---AVTITPSEYVSVRPGEPLTLECEATGR----PMPTVSWV  309 (471)
Q Consensus       241 ~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~p---~~~~~~~~~~~~~~g~~v~l~C~~~g~----p~~~i~W~  309 (471)
                      .+++.+|+|.|.|.+.+..+..    ...+.|.|...+   .+.. + .  .+.+|+.++|.|.+.+.    |.|.+.|+
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~-~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-L-E--PLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-C-c--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            9999999999999999875332    135677887643   3322 1 1  36789999999999764    78899999


Q ss_pred             eCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEEEE
Q psy17058        310 KYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAV  362 (471)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V  362 (471)
                      +++......    .....+.|.|..+..+|+|.|+|.|.|..+..  +.++.|.|
T Consensus       163 ~~~~~~~~~----~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          163 GNALSPLDP----ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             SSTTSSSCS----SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             CCCCccCCC----CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            998664321    22456789999999999999999999986543  55555543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.78  E-value=2.9e-18  Score=154.00  Aligned_cols=175  Identities=14%  Similarity=0.241  Sum_probs=121.9

Q ss_pred             CceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CC-----------------CcCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DG-----------------KFGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~-----------------~~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|++++|.|.+ .+.|  .+.+.|+|++.  .+                 ....++.+...    ...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            34578899999999998 5554  57999999532  11                 01234444432    347999999


Q ss_pred             CCCCCeEEEEEEEcCCCc-----eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC-----eEEEEe--C
Q psy17058        244 ATGDEGKYTCIAENSAGK-----EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-----TVSWVK--Y  311 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~-----~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-----~i~W~~--~  311 (471)
                      +.+|+|.|.|.+.|..+.     ....+.|.|...|.+...+ ....+.+|++++|.|.+.+.|.+     .+.|+|  +
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~  165 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTP-LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP  165 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEEC-SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecC-cEEEEecCCcEEEEeEecCcccccccceEEEEEEECC
Confidence            999999999999987552     2234667777666655444 34678999999999999988765     999999  5


Q ss_pred             CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecC
Q psy17058        312 IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHR  365 (471)
Q Consensus       312 ~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  365 (471)
                      +..+.              ............+|.|.+++.+|+|.|+|.|.|..... .....|.|...
T Consensus       166 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          166 GQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             TSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             CCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            55431              00111112345689999999999999999999854332 23356777654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.78  E-value=1.6e-18  Score=152.21  Aligned_cols=176  Identities=19%  Similarity=0.327  Sum_probs=117.6

Q ss_pred             CceeecCCCcEEEEee-CCCCC-----CeEEEEeCCCCC--------------CCCCcc--------cCcEEEEcCCCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPS-----ATIKWSKDNQEQ--------------LPPNMI--------AGETLIINGITKA  150 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~-----~~v~W~~~~~~~--------------~~~~~~--------~~~~L~i~~v~~~  150 (471)
                      ..+.+.+|++++|.|. .+.+.     +.+.|++++...              ...+..        ...+|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            4567899999999999 55443     689999984332              111111        2578999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CC
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PD  228 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~  228 (471)
                      |+|.|+|.+.+...  ......+.|.... .|.+...+  ...+.+|+.++|.|.+..+.|.+.+.|++++...... ..
T Consensus        83 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           83 DEGSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP--NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             GCSCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred             cCEEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC--CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence            99999999998532  3334445554322 24444333  3357789999999999678899999999954432211 11


Q ss_pred             ceEE-eee---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceee
Q psy17058        229 VEVY-QEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI  278 (471)
Q Consensus       229 ~~~~-~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~  278 (471)
                      .... ...   ..|.|.++..+|.|.|+|.+.|..+.....+.|.|..+|....
T Consensus       159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC------
T ss_pred             eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccC
Confidence            1111 111   2378999999999999999999999999999999987775443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.78  E-value=2.2e-18  Score=150.97  Aligned_cols=170  Identities=19%  Similarity=0.249  Sum_probs=115.9

Q ss_pred             CceeEEcCCeEEEEEEccCCCC--CCeEEEEeCC--CCCC-----------------cCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPD--NDGK-----------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|+|++  ..+.                 ...++.+..+    ...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            8 GPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            34568899999999999 5544  6799999974  2211                 1234444322    357999999


Q ss_pred             CCCCCeEEEEEEEcCCCc----eEEEEEEEEEeC----CceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCc
Q psy17058        244 ATGDEGKYTCIAENSAGK----EVMNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIA  313 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~----~~~~~~l~V~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~  313 (471)
                      +.+|+|.|.|.+.+..+.    ....+.|.|...    |.+...+. ...+.+|+.+.|.|.+.| +|.| .+.|++++.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence            999999999999987632    123456677653    44443332 124568999999999998 8988 999999987


Q ss_pred             cCCCccc---c--cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        314 PFDRNLE---R--DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       314 ~~~~~~~---~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .+.....   .  ......+.|.|..... |.|.|+|.|.|..|.......|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             CTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEECC
T ss_pred             ccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEecC
Confidence            7531110   0  1112335788854444 56999999999988876655543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=1.1e-18  Score=157.00  Aligned_cols=174  Identities=16%  Similarity=0.290  Sum_probs=118.3

Q ss_pred             eeEEcCCeEEEEEEccCCCC--CCeEEEEeCC--CCCC----------------cCCCceEEee----eceEEEeccCCC
Q psy17058        191 QTFIVGDRADIQCVLEAGEP--SPTQTWIRPD--NDGK----------------FGPDVEVYQE----LGVLRFNNIATG  246 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~----~~~l~i~~~~~~  246 (471)
                      ..+.+|++++|.|.+ .+.|  .+.+.|+|++  ....                ...++.+..+    ...|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B           10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             SEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             ccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            468899999999999 5554  6799999963  2211                1234444332    347999999999


Q ss_pred             CCeEEEEEEEcCCC-------ce--EEEEEEEEEeCC-------------ceee-CCCccEEecCCCcEEEEEEEeecCC
Q psy17058        247 DEGKYTCIAENSAG-------KE--VMNAYIHVLTLP-------------AVTI-TPSEYVSVRPGEPLTLECEATGRPM  303 (471)
Q Consensus       247 d~G~Y~C~~~~~~~-------~~--~~~~~l~V~~~p-------------~~~~-~~~~~~~~~~g~~v~l~C~~~g~p~  303 (471)
                      |+|.|.|.+.|..+       ..  ...+.|.|...+             ...+ .......+.+|++++|.|.+.+.|.
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999998753       11  133567776543             1111 1123456889999999999999888


Q ss_pred             CeEEEEe--CCccCCC--------------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        304 PTVSWVK--YIAPFDR--------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       304 ~~i~W~~--~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      +.+.|++  ++..+..              ...........+|.|.+++.+|+|.|+|.|.|..........|.|...
T Consensus       169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~  246 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAA  246 (257)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred             CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence            8999999  5554310              000011234568999999999999999999997522223356666654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.78  E-value=2.1e-19  Score=155.40  Aligned_cols=155  Identities=12%  Similarity=0.230  Sum_probs=108.3

Q ss_pred             EEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE-
Q psy17058        193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL-  271 (471)
Q Consensus       193 v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~-  271 (471)
                      +.+|++++|.|.+    |.+.++|+|++..+...     ....+.|.|.+++.+|+|.|+|.+.+...   ..+.|.+. 
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEE
Confidence            3579999999987    67899999998764321     12256799999999999999999755322   12334433 


Q ss_pred             --------------------------e----CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-
Q psy17058        272 --------------------------T----LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-  320 (471)
Q Consensus       272 --------------------------~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-  320 (471)
                                                .    ++.+ ...+ .....+|++++|.|.  |.|.+.+.|++++..+..... 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~  158 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI-TQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD  158 (204)
T ss_dssp             -------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTC
T ss_pred             eccccccccccccccccccccccccccccccccce-ecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCC
Confidence                                      0    1111 1111 122238999999999  789999999999987653211 


Q ss_pred             ccccCceeEEEEeec-CCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058        321 RDELTSRAVYTIASV-RESDAGQYKCIGKNSAGTE-EKVITVAVE  363 (471)
Q Consensus       321 ~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  363 (471)
                      .........|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.++
T Consensus       159 ~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          159 KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             TTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             ceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            111124679999999 9999999999999999963 556666553

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.78  E-value=1e-18  Score=152.43  Aligned_cols=170  Identities=19%  Similarity=0.355  Sum_probs=117.8

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKA  150 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~  150 (471)
                      +.+...|..+.+.+|++++|.|. .+.+.+.+.|+|.+....               ..+..     ...+|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            45666788899999999999999 777889999998521111               11111     3348999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEee-ccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCC-
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGP-  227 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~-  227 (471)
                      |+|.|+|.+.+..+........+.|.. ..+|.+.+.+... .+..|+.++|.|.+....| .+.++|++++..+.... 
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  160 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSS-EQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVL  160 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCc-eecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceE
Confidence            999999999887544344445566532 3456666555432 3457888999999944344 45999999987644321 


Q ss_pred             --------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        228 --------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       228 --------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                              ........+.|.|.....+|.|.|+|.+.|.....
T Consensus       161 ~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          161 QSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             eccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence                    00111123468888888899999999999976443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.78  E-value=9.2e-19  Score=151.21  Aligned_cols=165  Identities=13%  Similarity=0.176  Sum_probs=114.4

Q ss_pred             eeEEcCCeEEEEEEccC---CCCCCeEEEEeCCCCCCc------------CCCceE-EeeeceEEEeccCCCCCeEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEA---GEPSPTQTWIRPDNDGKF------------GPDVEV-YQELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~---~~p~~~v~W~~~~~~~~~------------~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      ..+.+|+.++|.|.+..   +.|.+.+.|++++..+..            ..+..+ ......|.|.+++.+|+|.|+|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            46789999999999842   235679999998765311            112221 11246899999999999999999


Q ss_pred             EEcCCCce-----EEEEEEEEEeC---CceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcccccccC
Q psy17058        255 AENSAGKE-----VMNAYIHVLTL---PAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELT  325 (471)
Q Consensus       255 ~~~~~~~~-----~~~~~l~V~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~  325 (471)
                      +.|..+..     ...+.|.|..+   |.+..     .....|+.+.|.|.+. |+|.|.+.|++++..+..........
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~-----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISD-----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEE-----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEe-----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            99976543     35667777664   22221     1235688999999995 89999999999998876432111111


Q ss_pred             -c---eeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        326 -S---RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       326 -~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                       .   .....+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence             1   1122334556789999999999999998877664

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.78  E-value=3.4e-18  Score=149.41  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=116.2

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCC--------------cCCCceEEe--eeceEEEeccCCCCCeEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGK--------------FGPDVEVYQ--ELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~--------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y  251 (471)
                      ....+.+|+.++|.|.+..+.+ .+.+.|+|++....              ...++.+..  ....|.|.+++.+|+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (216)
T 2xzc_L            8 PSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (216)
T ss_dssp             SEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence            3457889999999999524443 57999999653211              122343332  133799999999999999


Q ss_pred             EEEEEcCCC--ceEEEEEEEEE---eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-cc---
Q psy17058        252 TCIAENSAG--KEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-LE---  320 (471)
Q Consensus       252 ~C~~~~~~~--~~~~~~~l~V~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-~~---  320 (471)
                      .|.+.|..+  .......|.|.   .+|.+.+.+... ....|+.+.|.|.+.| .|.+ .+.|++++..+... ..   
T Consensus        88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            999999875  12223456665   345555533221 2235889999999998 5554 89999999887543 11   


Q ss_pred             cc-----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        321 RD-----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       321 ~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ..     .....+.|.|..+..+|+|.|+|.|.|..........+
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence            00     01123479999999999999999999988665544443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.78  E-value=7.6e-18  Score=149.60  Aligned_cols=165  Identities=19%  Similarity=0.333  Sum_probs=112.6

Q ss_pred             cEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCC------------------CCCCCCcc------cCcEEEEcCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQ------------------EQLPPNMI------AGETLIINGIT  148 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~------------------~~~~~~~~------~~~~L~i~~v~  148 (471)
                      .+...|..+.+.+|++++|.|..+.+.+.+.|+|+..                  ..+..+..      ...+|+|.+++
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             cceECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            4556688899999999999999666788999999621                  01112221      24589999999


Q ss_pred             CCCCeEEEEEEEecCCc----eeeeeEEEEEeeccC----------CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeE
Q psy17058        149 KADEGVYICSIQNAQGN----VFQDYASIQVDKREM----------PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ  214 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~----------p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v  214 (471)
                      .+|+|.|+|.+.+..+.    .......+.|....+          +.+... +....+.+|+.++|.|.+ .+.|.+.+
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~~-~~~p~~~i  159 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQS-PQSLTVWEGETAILNCSY-ENSAFDYF  159 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEE-CSEEEEETTSCEEEEEEC-CCTTCCEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEcc-CceEEEeCCCeEEEEEEE-ecCCCCcE
Confidence            99999999999987542    111234555542211          123332 345568899999999999 77788999


Q ss_pred             EEEeCCCCCC--------------cCCCceEEe----eeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        215 TWIRPDNDGK--------------FGPDVEVYQ----ELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       215 ~W~~~~~~~~--------------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .|+|++....              ...++.+..    ....|.|.+++.+|+|.|+|.+.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999753211              122333321    13479999999999999999999874

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.78  E-value=1.7e-18  Score=155.29  Aligned_cols=172  Identities=20%  Similarity=0.327  Sum_probs=118.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCC-----CCeEEEEeCCC-CCC--------------CCCcc-----cCcEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDP-----SATIKWSKDNQ-EQL--------------PPNMI-----AGETLI  143 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-----~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~  143 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+     .+.+.|+|++. ...              ..+..     ...+|+
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  112 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLR  112 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEE
Confidence            4566777788999999999999999 6666     58999999742 111              11111     223899


Q ss_pred             EcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCC
Q psy17058        144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDN  221 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~  221 (471)
                      |.+++.+|+|.|+|.+.+..+........+.|... .+|.+.+.+... .+.+|+.++|.|.+....|. ..++|+|++.
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence            99999999999999998875532233345666532 246665544432 23479999999999544555 4899999987


Q ss_pred             CCCcC-C---Cc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        222 DGKFG-P---DV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       222 ~~~~~-~---~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      .+... .   ..     ..+...+.|.|..+..+|+|.|+|.+.|.....
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            64322 0   00     011123468999999999999999999976543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.78  E-value=1.2e-18  Score=151.72  Aligned_cols=166  Identities=19%  Similarity=0.252  Sum_probs=119.7

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCC--CCCC------------cCCCceEEe--eeceEEEeccCCCCCeEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPD--NDGK------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYTC  253 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C  253 (471)
                      ...+.+|+.++|.|.+ .  +.+.+.|+|++  ....            ...++.+..  ....|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~-~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTG-T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEEC-C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEE-C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEE
Confidence            5578899999999999 3  78899999953  2211            123333322  23469999999999999999


Q ss_pred             EEEcCCC--ceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeecC--CCeEEEEeCCccCCCccc-----
Q psy17058        254 IAENSAG--KEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRP--MPTVSWVKYIAPFDRNLE-----  320 (471)
Q Consensus       254 ~~~~~~~--~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~-----  320 (471)
                      .+.+..+  .....+.|.|.    .+|.+.+.+.. ..+.+|+.+.|.|.+.|.+  .+.+.|+++|..+.....     
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~  164 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPS  164 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC-HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE
T ss_pred             EEecCCCceeECCCceEEEeCCCCcCCeeEecCCc-hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCce
Confidence            9999877  34445677777    56666665432 2334799999999999853  468999999988753211     


Q ss_pred             ---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        321 ---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       321 ---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                         .......+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus       165 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          165 KQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             ECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             ECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence               011123367899999999999999999999877766553

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.78  E-value=1.4e-17  Score=145.31  Aligned_cols=165  Identities=16%  Similarity=0.303  Sum_probs=111.7

Q ss_pred             cCCceeecCCCcEEEEee-CCC-------CCCeEEEEeCCCCC-----C-------------CCCcc-------cCcEEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND-------PSATIKWSKDNQEQ-----L-------------PPNMI-------AGETLI  143 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~-------p~~~v~W~~~~~~~-----~-------------~~~~~-------~~~~L~  143 (471)
                      .|..+.+.+|++++|.|. ...       +.+.+.|+|++...     +             ..+..       ...+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            467888999999999999 432       56789999984321     1             01111       234799


Q ss_pred             EcCCCCCCCeEEEEEEEecCCcee---eeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCC---CCCCeEEE
Q psy17058        144 INGITKADEGVYICSIQNAQGNVF---QDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAG---EPSPTQTW  216 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~---~p~~~v~W  216 (471)
                      |.+++.+|+|.|.|.+.+..+...   .....|.|.... .|.+..  +.  .+.+|+.++|.|.+...   .|.+.++|
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W  161 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF--LE--PLESGRPTRLSCSLPGSCEAGPPLTFSW  161 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec--Cc--cccCCCeEEEEEEeccCCCCCCCceEEE
Confidence            999999999999999998753311   134555555322 344432  21  25689999999999433   47889999


Q ss_pred             EeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEE
Q psy17058        217 IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIH  269 (471)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~  269 (471)
                      ++++.... ....   ...+.|.|..+..+|+|.|+|.|.|..+.  .+..+.|.
T Consensus       162 ~~~~~~~~-~~~~---~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          162 TGNALSPL-DPET---TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             ESSTTSSS-CSSC---CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             eCCCCccC-CCCc---eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            99986532 2211   23678999999999999999999997644  34444443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.78  E-value=3.9e-18  Score=149.08  Aligned_cols=165  Identities=21%  Similarity=0.360  Sum_probs=112.8

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC--------------CCCcc-----cCcEEEEcCCCCCCCeE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL--------------PPNMI-----AGETLIINGITKADEGV  154 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~i~~v~~~D~G~  154 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|++. ..+              ..+..     ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            66788999999999999 4443  57899999632 111              11111     23489999999999999


Q ss_pred             EEEEEEecCC-ceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC--CCc
Q psy17058        155 YICSIQNAQG-NVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG--PDV  229 (471)
Q Consensus       155 Y~C~~~~~~~-~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~--~~~  229 (471)
                      |+|.+.+..+ ........+.|... .+|.+.+.+.... ...|+.++|.|.+....|.+ .++|++++..+...  ...
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  165 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV  165 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEec
Confidence            9999998765 21233445666432 4566665444322 33689999999995445654 99999998764433  000


Q ss_pred             -------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        230 -------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       230 -------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                             ..+...+.|.|..+..+|+|.|+|.|.|......
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          166 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence                   0111134789999999999999999999865543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.78  E-value=3.8e-18  Score=152.53  Aligned_cols=174  Identities=17%  Similarity=0.233  Sum_probs=112.5

Q ss_pred             CcEEE-cCCceeecCCCcEEEEee-CCCCCCe-----EEEEeCCCCCCC----------------CCcc--------cCc
Q psy17058         92 NEVQV-TPRQQSAPEGSQVTIECK-SNDPSAT-----IKWSKDNQEQLP----------------PNMI--------AGE  140 (471)
Q Consensus        92 ~~v~~-~p~~~~v~~G~~v~l~C~-~~~p~~~-----v~W~~~~~~~~~----------------~~~~--------~~~  140 (471)
                      +.+.+ .|..+.+.+|++++|.|. .+.|.+.     +.|++++.....                .+..        ...
T Consensus         3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
T 3pv7_A            3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA   82 (248)
T ss_dssp             EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred             eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence            34444 345668999999999999 6565554     999997332211                0000        344


Q ss_pred             EEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeC
Q psy17058        141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRP  219 (471)
Q Consensus       141 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~  219 (471)
                      +|.|.+++.+|+|.|+|.+.+..+. ......|.|.  .+|.+.+.+..  .+..|+.++|.|.+....|.+ .++|+++
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~--~~P~v~~~~~~--~~~~~~~~~L~C~~~g~~P~pi~v~W~k~  157 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLK-AQGTVQLEVV--ASPASRLLLDQ--VGMKENEDKYMCESSGFYPEAINITWEKQ  157 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE--BCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEE
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCcc-ceeEEEEEEe--cCCceEEecCC--ccccCCCcEEEEEEccEECCCeEEEEEEC
Confidence            6999999999999999999987654 4444455554  57777665542  345688889999994447888 9999999


Q ss_pred             CCCCCcCC--------------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEE
Q psy17058        220 DNDGKFGP--------------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHV  270 (471)
Q Consensus       220 ~~~~~~~~--------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V  270 (471)
                      +..+....              ........+.|.|.....+|.|.|+|.+.|..+.  ....+.|.|
T Consensus       158 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          158 TQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            97543210              0011112346888889999999999999998776  455666666

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=7.2e-18  Score=149.96  Aligned_cols=165  Identities=15%  Similarity=0.347  Sum_probs=114.9

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCC----CCeEEEEeCCCCC-C--------------CCCcc-----cCcEEEEcC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDP----SATIKWSKDNQEQ-L--------------PPNMI-----AGETLIING  146 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~~~~-~--------------~~~~~-----~~~~L~i~~  146 (471)
                      ..|...|..+.+.+|++++|.|. .+.+    .+.+.|+|++... .              ..+..     ...+|+|.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP   81 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence            35667788899999999999999 7776    7889999963211 1              11111     223799999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEeecc---CCeeeecCCCceeEEcCCeEEEEEEccCCCC--CCeEEEEeCC-
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKRE---MPRIRIHPNASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPD-  220 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~-  220 (471)
                      ++.+|+|.|+|.+.+..+........|.|....   .|.+.+..+....+.+|+.++|.|.+ .+.|  .+.+.|+|+. 
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~  160 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTA-SGFNIKDTYMHWVKQRP  160 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECT
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEE-cCccCCCCEEEEEEECC
Confidence            999999999999998755423344566665432   23333333445678899999999999 5555  4699999963 


Q ss_pred             -CCCC-----------------cCCCceEEee----eceEEEeccCCCCCeEEEEEEEc
Q psy17058        221 -NDGK-----------------FGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       221 -~~~~-----------------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                       ....                 ...++.+...    ...|.|.+++.+|+|.|+|.+.+
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          161 EQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence             2211                 1223333321    24799999999999999999984

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.77  E-value=9e-17  Score=137.82  Aligned_cols=243  Identities=15%  Similarity=0.235  Sum_probs=166.0

Q ss_pred             CcEEEcCCceeecCCCcEEEEee--CCCC---CCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK--SNDP---SATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~--~~~p---~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      +.+++.|....+..|+.++|+|.  .+.|   ...++|+|+ +..+..   ....|.|..++..|+|.|+|.+.+..+. 
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKD-G~~IsG---aT~tLti~s~t~sdSG~YqCvVTDa~Gc-   77 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKD-DQPHEN---NTATLTVADATSENAGSYKVTVQDTDTM-   77 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEET-TEECSC---CSSEEEESSCCGGGCEEEEEEEEETTTC-
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEEC-CccccC---CcceEEeeeccccCCeEEEEEEEECCCC-
Confidence            56788899999999999999999  6666   458999999 655554   3458999999999999999999998776 


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc--cCCCC-----CCeEEEEeCCCCCCcCCCceEEeeeceEE
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL--EAGEP-----SPTQTWIRPDNDGKFGPDVEVYQELGVLR  239 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~--~~~~p-----~~~v~W~~~~~~~~~~~~~~~~~~~~~l~  239 (471)
                      ...+..+.|.....+.+.+..+....+..|..+.|.+.+  ..+.+     ..++.|+|++..+         .....|.
T Consensus        78 s~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~I---------sgAq~lT  148 (304)
T 3shs_A           78 TSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI---------DTTQDIT  148 (304)
T ss_dssp             CEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEE---------ESSSEEE
T ss_pred             eeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEc---------cCccccc
Confidence            444445555544444455554444445567889998876  55555     5699999998642         1133577


Q ss_pred             EeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe--------ecCCC--eEE
Q psy17058        240 FNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT--------GRPMP--TVS  307 (471)
Q Consensus       240 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~--------g~p~~--~i~  307 (471)
                      +......++|.|+|++++..+.  .+.++.+.+...+ +.........+..|+.+.|.-.+.        |.|..  .+.
T Consensus       149 ~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (304)
T 3shs_A          149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMN-VDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN  227 (304)
T ss_dssp             ECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEE-EEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEE
T ss_pred             eeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccc-cchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEE
Confidence            7888889999999999998664  3444444443222 112222344778899999876654        22332  467


Q ss_pred             EEeCCcc-C-C--------CcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        308 WVKYIAP-F-D--------RNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       308 W~~~~~~-~-~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      |+...+. + .        ...........+.|.-.....+|...|.|.|.-
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (304)
T 3shs_A          228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKL  279 (304)
T ss_dssp             EEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHHH
Confidence            8854322 1 1        111122233456677788889999999999864

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.77  E-value=3.4e-18  Score=148.96  Aligned_cols=169  Identities=20%  Similarity=0.359  Sum_probs=115.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCC---CCeEEEEeCCC-CC--------------CCCCcc-----cCcEEEEcCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDP---SATIKWSKDNQ-EQ--------------LPPNMI-----AGETLIINGIT  148 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~~-~~--------------~~~~~~-----~~~~L~i~~v~  148 (471)
                      .+.. |..+.+.+|++++|.|. .+.+   .+.+.|++++. ..              ...+..     ....|.|.+++
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   81 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   81 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence            3455 78889999999999999 6665   47899999731 11              111211     23489999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCc
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKF  225 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~  225 (471)
                      .+|+|.|.|.+.+..+........+.|..  ..+|.+.+.+... .+..|+.++|.|.+....|. ..++|++++..+..
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            99999999999987654223344555532  2456666554432 33478999999999443454 39999999876433


Q ss_pred             CCC---ce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        226 GPD---VE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       226 ~~~---~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      ...   ..     .....+.|.|..+..+|.|.|+|.|.|......
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            211   00     111234688999999999999999999765433

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.77  E-value=6.5e-18  Score=148.24  Aligned_cols=173  Identities=19%  Similarity=0.322  Sum_probs=117.6

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCC---eEEEEeCCCCCCc----------------CCCce---------EEeeeceEEEe
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSP---TQTWIRPDNDGKF----------------GPDVE---------VYQELGVLRFN  241 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~---~v~W~~~~~~~~~----------------~~~~~---------~~~~~~~l~i~  241 (471)
                      ...+..|++++|.|.+ .+.+.+   .++|+|++..+..                ..+..         ....+.+|.|.
T Consensus        10 ~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             EEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             EEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            3467789999999998 555544   4899998754211                00000         11124579999


Q ss_pred             ccCCCCCeEEEEEEEcCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcc
Q psy17058        242 NIATGDEGKYTCIAENSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNL  319 (471)
Q Consensus       242 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~  319 (471)
                      +++.+|+|.|+|.+.+..+.. .....+.+..+|.....+. ......++.+.+.|.+. +.|++.+.|++++..+....
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQ-EVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEEC-CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeeccc-ceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence            999999999999999876654 3444556665665544432 23456677777777765 57888999999877654221


Q ss_pred             cc-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEEec
Q psy17058        320 ER-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAVEH  364 (471)
Q Consensus       320 ~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~  364 (471)
                      ..     ......+.|.|..+..+|+|.|+|.|.|..|...  .++.|.|++
T Consensus       168 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          168 QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            11     1112245799999999999999999999988764  455666654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.77  E-value=1.3e-18  Score=152.33  Aligned_cols=172  Identities=19%  Similarity=0.362  Sum_probs=115.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCC-CCCeEEEEeCCCCC-------------------CCCCcc-----cCcEEEEc
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SND-PSATIKWSKDNQEQ-------------------LPPNMI-----AGETLIIN  145 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~-------------------~~~~~~-----~~~~L~i~  145 (471)
                      +.+...| .+.+.+|++++|.|. .+. +.+.+.|+|.....                   ...+..     ...+|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            4555556 888999999999999 666 88999999942111                   001111     23569999


Q ss_pred             CCCCCCCeEEEEEEEecCC---c-eeeeeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe
Q psy17058        146 GITKADEGVYICSIQNAQG---N-VFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR  218 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~---~-~~~~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~  218 (471)
                      +++.+|+|.|+|.+.+..+   . .......|.|...  .+|.+.+.+... .+..|+.++|.|.+....|.+ .++|++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~-~~~~~~~v~L~C~~~g~~p~~~~v~W~k  159 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSS-EELKENKATLVCLISNFSPSGVTVAWKA  159 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCc-ccccCCcEEEEEEECcccCCCeEEEEEE
Confidence            9999999999999998765   1 1333445555522  456665544432 345679999999995446666 999999


Q ss_pred             CCCCCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        219 PDNDGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       219 ~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      ++..+......       ......+.|.|.....+|.|.|+|.|.|..+....+
T Consensus       160 ~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          160 NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            98765431110       011113458888888889999999999987655443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.77  E-value=4.6e-19  Score=153.25  Aligned_cols=156  Identities=15%  Similarity=0.236  Sum_probs=107.1

Q ss_pred             ecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEee-----
Q psy17058        103 APEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK-----  177 (471)
Q Consensus       103 v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~-----  177 (471)
                      +.+|++++|.|..  |.+.+.|+|+ +..+......+..|.|.+++.+|+|.|+|.+.+....    ...|.+..     
T Consensus        15 ~~~G~~v~L~C~~--p~~~i~W~k~-g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~----~~~v~v~~~~~~~   87 (204)
T 1sy6_A           15 YQEDGSVLLTCDA--EAKNITWFKD-GKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSK----PLQVYYRMGSADD   87 (204)
T ss_dssp             CCSSSEEEEEECS--CSSEEEEEET-TEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSSCCC----CEEEEEEC-----
T ss_pred             ecCCCeEEEEEcC--CCCEEEEEEC-CEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCCCe----eEEEEEEEecccc
Confidence            5689999999986  7889999998 6555422224578999999999999999996543221    23333320     


Q ss_pred             -c-------------------c---CCeeeecCCCceeEE-cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC-CceEE
Q psy17058        178 -R-------------------E---MPRIRIHPNASQTFI-VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP-DVEVY  232 (471)
Q Consensus       178 -~-------------------~---~p~~~~~~~~~~~v~-~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~-~~~~~  232 (471)
                       .                   .   .+......+ . .+. +|+.++|.|.   +.|.+.++|++++..+.... ...+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~~~~~~~~  162 (204)
T 1sy6_A           88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-Y-KVSISGTTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIG  162 (204)
T ss_dssp             -------------------------------CCC-C-EEEEETTEEEEECS---CCCSSCEEEEETTEEESCCTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccceecCC-c-eeeecCCcEEEEcC---CCCCCceEEEECCEECCCccCCceEe
Confidence             0                   0   011111111 2 344 8999999997   57888999999987754432 22233


Q ss_pred             eeeceEEEecc-CCCCCeEEEEEEEcCCCc-eEEEEEEEE
Q psy17058        233 QELGVLRFNNI-ATGDEGKYTCIAENSAGK-EVMNAYIHV  270 (471)
Q Consensus       233 ~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~-~~~~~~l~V  270 (471)
                      ...+.|.|.++ +.+|+|.|+|.|.|..+. .+..+.|.+
T Consensus       163 ~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          163 SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             cCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            34788999999 999999999999998885 244555544

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.77  E-value=1.5e-17  Score=148.59  Aligned_cols=166  Identities=18%  Similarity=0.355  Sum_probs=112.1

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCC-----CCeEEEEeCCCCC-C--------------CCCcc-----cCcEEEEc
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDP-----SATIKWSKDNQEQ-L--------------PPNMI-----AGETLIIN  145 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p-----~~~v~W~~~~~~~-~--------------~~~~~-----~~~~L~i~  145 (471)
                      ..+...|..+.+.+|++++|.|. .+.+     .+.+.|+|++... .              ..+..     ....|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   81 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS   81 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence            35666788899999999999999 6666     6899999963211 0              11111     23479999


Q ss_pred             CCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccC----------CeeeecCCCceeEEcCCeEEEEEEccCCCC--CCe
Q psy17058        146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREM----------PRIRIHPNASQTFIVGDRADIQCVLEAGEP--SPT  213 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~----------p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~  213 (471)
                      +++.+|+|.|.|.+.+..+........|.|.....          |.+.+.......+.+|+.++|.|.+ .+.+  .+.
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~  160 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKA-TNYAFTDYS  160 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSC
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEE-cCcccCCcE
Confidence            99999999999999887543223345666654321          2222222233458899999999999 4443  569


Q ss_pred             EEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        214 QTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       214 v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      +.|+|++....                   ...++.+..+    ...|.|.+++.+|+|.|.|.+.|.
T Consensus       161 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          161 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99999742111                   1233333321    247999999999999999999884

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.77  E-value=5.5e-17  Score=138.46  Aligned_cols=158  Identities=14%  Similarity=0.199  Sum_probs=116.5

Q ss_pred             eeEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      ..+..|++++|.|.+  +.|.+  .|.|++.+..+   .+.........|.|.+++.+|+|.|.|.+.|..+.....+.|
T Consensus        17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEE
Confidence            578899999999998  55556  99999976553   233333446689999999999999999999988888888999


Q ss_pred             EEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC----CeEEEEeCCccCCCccc-c--c-------------ccCce
Q psy17058        269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM----PTVSWVKYIAPFDRNLE-R--D-------------ELTSR  327 (471)
Q Consensus       269 ~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~----~~i~W~~~~~~~~~~~~-~--~-------------~~~~~  327 (471)
                      .|+.+|........  .+..|+.+ |.|.+.|. |.    ++|.|+|++..+..... .  .             .....
T Consensus        92 tV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt  168 (210)
T 1gsm_A           92 LVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT  168 (210)
T ss_dssp             EEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred             EEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE
Confidence            99998876543222  56678888 99999984 64    48999999999864321 0  0             11112


Q ss_pred             eEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        328 AVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       328 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +++.+.....+|.+.|+|.|.+..-....
T Consensus       169 s~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          169 ERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             EEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             EEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence            34444466677778999999987654433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.77  E-value=8.1e-18  Score=147.65  Aligned_cols=173  Identities=19%  Similarity=0.243  Sum_probs=112.2

Q ss_pred             cCCceeecCCCcEEEEee-CCCC-----CCeEEEEeCC--------CCCCC--------CCcc--------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP-----SATIKWSKDN--------QEQLP--------PNMI--------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p-----~~~v~W~~~~--------~~~~~--------~~~~--------~~~~L~i~~  146 (471)
                      .+..+.+.+|++++|.|. .+.|     ...+.|++++        +....        .+..        ...+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345668999999999999 5555     3489999972        11110        1111        234899999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC-CCc
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-GKF  225 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~-~~~  225 (471)
                      ++.+|+|.|+|.+.+ .+. ......|.|.  .++...... ....+.+|+.++|.|.+ .+.|.+.+.|+++++. +..
T Consensus        87 v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~--~~~~~~~~~-~~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g~~~~~  160 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGA-DYKRITVKVN--APYNKINQR-ILVVDPVTSEHELTCQA-EGYPKAEVIWTSSDHQVLSG  160 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSE-EEEEEEEEEE--BCCCCCEEE-EEEEETTTTEEEEEEEE-EEBSCCEEEEEETTCCEECC
T ss_pred             cccccCeEEEEEEEe-CCC-ceeEEEEEEE--CCCCCCCce-eeeeecCCCcEEEEEEe-cCCCCCeEEEEECCCceecC
Confidence            999999999999998 443 4445555554  333211110 11145689999999999 6699999999998544 221


Q ss_pred             CCCceE-EeeeceE---EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCc
Q psy17058        226 GPDVEV-YQELGVL---RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       226 ~~~~~~-~~~~~~l---~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~  275 (471)
                      ...... ....+.+   .+..+...|.|.|+|.|.|..+.....+.|.|...|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             ccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            111101 1111222   2224567899999999999999999999998876664

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.77  E-value=4.4e-18  Score=148.28  Aligned_cols=168  Identities=18%  Similarity=0.235  Sum_probs=116.2

Q ss_pred             CceeEEcCCeEEEEEEccCCCC---CCeEEEEeCCCCCC--------------cCCCceEEee--eceEEEeccCCCCCe
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP---SPTQTWIRPDNDGK--------------FGPDVEVYQE--LGVLRFNNIATGDEG  249 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d~G  249 (471)
                      ....+.+|+.++|.|.+ .+.|   .+.+.|+|++....              ...++.+...  ...|.|.+++.+|+|
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            8 SALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             SEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            45578899999999999 5555   47899999743111              1234433321  237999999999999


Q ss_pred             EEEEEEEcCCCce-EEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeecC-CC-eEEEEeCCccCCCcccc-
Q psy17058        250 KYTCIAENSAGKE-VMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRP-MP-TVSWVKYIAPFDRNLER-  321 (471)
Q Consensus       250 ~Y~C~~~~~~~~~-~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~-~i~W~~~~~~~~~~~~~-  321 (471)
                      .|.|.+.|..+.. .....|.|.    .+|.+.+.+.. ..+..|+.+.|.|.+.|.+ ++ .+.|++++..+...... 
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  165 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT  165 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecC
Confidence            9999999876532 233456663    35555554332 2244689999999999854 43 89999999877543110 


Q ss_pred             -------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        322 -------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       322 -------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                             ......+.|.|..+..+|+|.|+|.|.|......+++
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence                   0112345789999999999999999999877655443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.77  E-value=8.7e-18  Score=149.60  Aligned_cols=165  Identities=18%  Similarity=0.309  Sum_probs=112.2

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC-C--------------CCCcc-----cCcEEEEcCCCCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ-L--------------PPNMI-----AGETLIINGITKA  150 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~-~--------------~~~~~-----~~~~L~i~~v~~~  150 (471)
                      +.|...|..+.+.+|++++|.|. .+.+.+.+.|+|+.... .              ..+..     ...+|+|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            35677788899999999999999 77778899999963211 1              11111     2348999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEeeccC-----------CeeeecCCCceeEEcCCeEEEEEEccCCCC--CCeEEEE
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDKREM-----------PRIRIHPNASQTFIVGDRADIQCVLEAGEP--SPTQTWI  217 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----------p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~  217 (471)
                      |+|.|.|.+.+..+........|.|.....           +.....+. ...+.+|++++|.|.+ .+.+  .+.+.|+
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~  159 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESG-PSLVKPSQTLSLTCSV-TGDSITSDYXSXI  159 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEEC-CSEECTTSCEEEEEEE-ESSCGGGSCEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCC-cceecCCCeEEEEEEE-EccccCCcceeeE
Confidence            999999999987543223344566653211           11222222 3458899999999999 5554  4789999


Q ss_pred             eCC--CCCC----------------cCCCceEEee----eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        218 RPD--NDGK----------------FGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       218 ~~~--~~~~----------------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      |++  ..+.                ...++.+..+    ...|.|.+++.+|+|.|+|.+.|.
T Consensus       160 k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          160 RKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            964  2210                1233333321    247999999999999999999873

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.76  E-value=6.3e-18  Score=142.70  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             eeEEcCCeEEEEEEccC-CCCCCeEEEEe--CCCCC----------CcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        191 QTFIVGDRADIQCVLEA-GEPSPTQTWIR--PDNDG----------KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~-~~p~~~v~W~~--~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      ....+|++++|.|.... +.+.+.|.|++  ++..+          ....++.+.. +++|.|.+++.+|+|.|+|.+.|
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~-ngsL~I~~v~~~DsG~Y~c~~~n   87 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-NGTLKIKHLKTDDQDIYKVSIYD   87 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECT-TSCEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECC-CCCEEECCCChhhCEEEEEEEEe
Confidence            45678999999995411 34567999999  77654          2334555554 67899999999999999999999


Q ss_pred             CCCce--EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeec
Q psy17058        258 SAGKE--VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV  335 (471)
Q Consensus       258 ~~~~~--~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~  335 (471)
                      ..+..  ...+.|.|..+..   .|  .+.. .+..+.|.|.+.+.|.+.+.|++++..+ ..       ....+.+.. 
T Consensus        88 ~~g~~~~~~~~~L~V~~~~~---~P--~i~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-------~~~~i~~~~-  152 (182)
T 1hnf_A           88 TKGKNVLEKIFDLKIQERVS---KP--KISW-TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-------SQRVITHKW-  152 (182)
T ss_dssp             TTSCEEEEEEEEEEEECCCC---CC--EEEE-ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------ESSCEEEEC-
T ss_pred             CCCceeEEEEEEEEEcCcCC---CC--EEEE-ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------CCcEEEEec-
Confidence            87764  3466777775311   11  1111 2447999999999898999999999876 11       122333333 


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        336 RESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       336 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      ..+|+|.|+|.|.|..|..+....+..
T Consensus       153 ~~~d~G~Y~C~a~N~~~~~~s~~~~~c  179 (182)
T 1hnf_A          153 TTSLSAKFKCTAGNKVSKESSVEPVSC  179 (182)
T ss_dssp             CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence            478999999999999999887766643

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.76  E-value=2.1e-18  Score=150.98  Aligned_cols=167  Identities=20%  Similarity=0.316  Sum_probs=116.1

Q ss_pred             ceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCC------------------cCCCceEEe--eeceEEEeccCCCCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGK------------------FGPDVEVYQ--ELGVLRFNNIATGDE  248 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~------------------~~~~~~~~~--~~~~l~i~~~~~~d~  248 (471)
                      ...+.+|+.++|.|.+ .+. |.+.+.|+|......                  ...++.+..  ....|.|.+++.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B            9 SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccC
Confidence            5678899999999999 566 788999999432100                  112333222  234699999999999


Q ss_pred             eEEEEEEEcCCC-----ceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCC
Q psy17058        249 GKYTCIAENSAG-----KEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDR  317 (471)
Q Consensus       249 G~Y~C~~~~~~~-----~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~  317 (471)
                      |.|.|.+.+..+     .....+.|.|.    .+|.+.+.+.. .....|+.+.|.|.+.| .|.+ .+.|++++..+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~-~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B           88 AIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPS-SEELKENKATLVCLISNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--
T ss_pred             EEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCC-cccccCCcEEEEEEECcccCCCeEEEEEECCEECcC
Confidence            999999998765     23334677787    45555554332 23445789999999998 6767 8999999988754


Q ss_pred             ccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        318 NLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       318 ~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ...       .......+.|.|.....+|+|.|+|.|.|..+....++
T Consensus       167 ~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          167 GVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             ------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            211       01112234588888888899999999999988766554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.76  E-value=4.6e-18  Score=149.29  Aligned_cols=169  Identities=17%  Similarity=0.232  Sum_probs=117.2

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC---------------------cCCCceEEee----eceEEEec
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK---------------------FGPDVEVYQE----LGVLRFNN  242 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~---------------------~~~~~~~~~~----~~~l~i~~  242 (471)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|+|+.....                     ...++.+..+    ...|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             ceeEcCCCEEEEEEEe-cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            3467899999999999 4444  57899998642210                     1234444332    34799999


Q ss_pred             cCCCCCeEEEEEEEcCCC-----ceEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeC
Q psy17058        243 IATGDEGKYTCIAENSAG-----KEVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKY  311 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~  311 (471)
                      ++.+|+|.|.|.+.+..+     .......|.|..    +|.+...+.. ..+.+|+.+.|.|.+.|. |.| .+.|+++
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  166 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  166 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence            999999999999998653     222334666653    3455443321 235689999999999985 888 9999999


Q ss_pred             CccCCCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        312 IAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       312 ~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      +..+.....     .......+.|.|..+..+| |.|+|.|.|..|.......|.
T Consensus       167 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          167 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             TBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            877642110     0012234578999999899 999999999999876655543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.76  E-value=1e-17  Score=150.29  Aligned_cols=179  Identities=16%  Similarity=0.192  Sum_probs=117.8

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLI  143 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~  143 (471)
                      +...|.++.+.+|++|+|.|. .+.  +.+.+.|+|.. +..+                   ..+..       ...+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            456677889999999999999 553  36789999941 1111                   01111       123599


Q ss_pred             EcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeec-------------cCCeeeecCCCceeEEcCCeEEEEEEccCCCC
Q psy17058        144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-------------EMPRIRIHPNASQTFIVGDRADIQCVLEAGEP  210 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p  210 (471)
                      |.+++.+|+|.|+|.+.+..+........+.|...             .++.+... +....+.+|++++|.|.+ .+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~~-~~~~  161 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT-PASLAVSLGQRATISCRA-SENV  161 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEE-CSEEEECTTSCEEEEEEE-SSCC
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECc-CCeEEEeCCCCEEEEEEe-cCcc
Confidence            99999999999999999865543344556666531             12333333 345678899999999999 5666


Q ss_pred             CC----eEEEEeCCCCCCc--------------CCCceEEee--eceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        211 SP----TQTWIRPDNDGKF--------------GPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIH  269 (471)
Q Consensus       211 ~~----~v~W~~~~~~~~~--------------~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~  269 (471)
                      .+    .+.|+|++.....              ..++.....  ...|.|.+++.+|+|.|+|.+.|..... .....|.
T Consensus       162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~  241 (253)
T 3uzq_A          162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLE  241 (253)
T ss_dssp             EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEE
T ss_pred             ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEE
Confidence            65    8999996322111              123332221  2369999999999999999998864332 2334566


Q ss_pred             EEeCC
Q psy17058        270 VLTLP  274 (471)
Q Consensus       270 V~~~p  274 (471)
                      |...+
T Consensus       242 v~~~~  246 (253)
T 3uzq_A          242 IKRPL  246 (253)
T ss_dssp             ECCC-
T ss_pred             EcCCC
Confidence            65433

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=2.4e-17  Score=146.33  Aligned_cols=160  Identities=16%  Similarity=0.280  Sum_probs=111.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC-----------------CCcCCCceEEe---eeceEEEeccCCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-----------------GKFGPDVEVYQ---ELGVLRFNNIATGDE  248 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~-----------------~~~~~~~~~~~---~~~~l~i~~~~~~d~  248 (471)
                      ....+.+|++++|.|..  +.|.+.+.|+|+...                 .....++.+..   ....|.|.+++.+|+
T Consensus         8 ~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            8 RNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             SEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             cceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            45678899999999993  678899999996211                 01123444432   244799999999999


Q ss_pred             eEEEEEEEcCCCc-----eEEEEEEEEEeCC------------ceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeC
Q psy17058        249 GKYTCIAENSAGK-----EVMNAYIHVLTLP------------AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY  311 (471)
Q Consensus       249 G~Y~C~~~~~~~~-----~~~~~~l~V~~~p------------~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~  311 (471)
                      |.|.|.+.|..+.     ......|.|...+            .+...+ ....+.+|++++|.|.+.+.|.+.+.|+++
T Consensus        86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~  164 (238)
T 2p1y_A           86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP-QSLTVWEGETAILNCSYENSAFDYFPWYQQ  164 (238)
T ss_dssp             EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC-SEEEEETTSCEEEEEECCCTTCCEEEEEEE
T ss_pred             eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC-ceEEEeCCCeEEEEEEEecCCCCcEEEEEE
Confidence            9999999987542     1123567776554            233333 346789999999999999999999999997


Q ss_pred             Ccc--CC--------------Ccccc--cccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        312 IAP--FD--------------RNLER--DELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       312 ~~~--~~--------------~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      +..  ..              .....  .......+|.|.+++.+|+|.|+|.|.|..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          165 FPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            421  10              00000  012235789999999999999999999984

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=1e-17  Score=149.64  Aligned_cols=172  Identities=14%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCCC--------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQEQ--------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~~--------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++++|.|. .+.|  .+.+.|+|++...                    ...+..       ...+|+|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            45688999999999999 6665  5789999952110                    111111       2347999999


Q ss_pred             CCCCCeEEEEEEEecCCc-eeeeeEEEEEeec-------------cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCe
Q psy17058        148 TKADEGVYICSIQNAQGN-VFQDYASIQVDKR-------------EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT  213 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~-------------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~  213 (471)
                      +.+|+|.|+|.+.+..+. .......|.|...             .++.+.. .+....+.+|+.++|.|.+ .+.|.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~-~~~~~~~  166 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQ-SPATLSLSPGERATLSCRA-SQSVRSN  166 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEE-ECSEEEECTTSCEEEEEEE-SSCCTTC
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEc-cCCEEEecCCCcEEEEEEe-CCCccce
Confidence            999999999999986221 1222345565532             1222322 3344567899999999999 6777789


Q ss_pred             EEEEe--CCCCCC------------cCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEE
Q psy17058        214 QTWIR--PDNDGK------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVL  271 (471)
Q Consensus       214 v~W~~--~~~~~~------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~  271 (471)
                      +.|+|  ++..+.            ...++.+..  ....|.|.+++.+|+|.|+|.+.|..... .....|.|.
T Consensus       167 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          167 LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            99999  444321            122333221  23469999999999999999998754322 223345543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=1.3e-17  Score=142.81  Aligned_cols=155  Identities=19%  Similarity=0.274  Sum_probs=106.3

Q ss_pred             cCCceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCC----CC----------------Ccc--cCcEEEEcCCCCCCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQL----PP----------------NMI--AGETLIINGITKADE  152 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~----~~----------------~~~--~~~~L~i~~v~~~D~  152 (471)
                      .|..+.+.+|++|+|.|. .+ .+.+.+.|+++ +..+    ..                +..  .+.+|+|.+++.+|+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFN-ETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEET-TEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEEC-CEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence            356778999999999999 43 45579999998 3321    00                101  357899999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCC-eEEEEEEccCCCCCCeEEEEeCCCCCCcCCCce
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGD-RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE  230 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~-~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  230 (471)
                      |.|+|.+.+..+. ......|.|.... .|.+....   .....|. .++|.|.+....|.+.++|++++..+       
T Consensus        83 G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~---~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l-------  151 (193)
T 2if7_A           83 GSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS---QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL-------  151 (193)
T ss_dssp             EEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC---C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE-------
T ss_pred             ceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc---eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc-------
Confidence            9999999988776 4445555554221 13333222   1233465 89999999544568899999987642       


Q ss_pred             EEeeeceEEEeccCCC-CCeEEEEEEEcCCCceEEE
Q psy17058        231 VYQELGVLRFNNIATG-DEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       231 ~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~~~  265 (471)
                        ..+..|.|.....+ |.|.|+|.|.|..+..+..
T Consensus       152 --~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          152 --SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             --ESSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             --CCCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence              12445777655554 8999999999998876544

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.76  E-value=5.4e-18  Score=146.34  Aligned_cols=163  Identities=13%  Similarity=0.255  Sum_probs=108.6

Q ss_pred             ceeecCCCcEEEEee-CC----CCCCeEEEEeCCCCCCC--------------CCc----ccCcEEEEcCCCCCCCeEEE
Q psy17058        100 QQSAPEGSQVTIECK-SN----DPSATIKWSKDNQEQLP--------------PNM----IAGETLIINGITKADEGVYI  156 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~----~p~~~v~W~~~~~~~~~--------------~~~----~~~~~L~i~~v~~~D~G~Y~  156 (471)
                      .+.+.+|++++|.|. ..    .+.+.+.|+++ +..+.              .+.    ....+|.|.+++.+|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~-~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeC-CcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEE
Confidence            467899999999999 32    25578999998 44331              111    13568999999999999999


Q ss_pred             EEEEecCCceee--eeEEEEEeeccC---CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE
Q psy17058        157 CSIQNAQGNVFQ--DYASIQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV  231 (471)
Q Consensus       157 C~~~~~~~~~~~--~~~~l~v~~~~~---p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  231 (471)
                      |.+.+..+....  ....+.|.+..+   |.+....     ...|+.++|.|.+..+.|.+.++|++++..+........
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~-----~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~  156 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE-----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS  156 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE-----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEecc-----CCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEE
Confidence            999997654221  133444443333   3332211     135889999999955889999999999876543322111


Q ss_pred             Eeee-ceE---EEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        232 YQEL-GVL---RFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       232 ~~~~-~~l---~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      .... +.+   .+..+...|.|.|+|.|.|..+..+..+.+
T Consensus       157 ~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          157 QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            1111 222   234456689999999999998887766543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.76  E-value=3.1e-18  Score=149.12  Aligned_cols=170  Identities=18%  Similarity=0.347  Sum_probs=116.2

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCC-CCCC--------------CCCcc-----cCcEEEEcCCCCCCCe
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDN-QEQL--------------PPNMI-----AGETLIINGITKADEG  153 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~-~~~~--------------~~~~~-----~~~~L~i~~v~~~D~G  153 (471)
                      +...| .+.+.+|++++|.|... +.+.+.|+|++ +...              ..+..     ...+|.|.+++.+|+|
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT-SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC-CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC-CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence            33444 78899999999999944 88999999952 1111              11111     3457999999999999


Q ss_pred             EEEEEEEecCC-ceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCCcCC--
Q psy17058        154 VYICSIQNAQG-NVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGKFGP--  227 (471)
Q Consensus       154 ~Y~C~~~~~~~-~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~~~~--  227 (471)
                      .|+|.+.+..+ ........|.|..  ..+|.+.+.+... .+.+|+.++|.|.+.... |.+.+.|++++..+....  
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  160 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET  160 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCH-HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCch-hhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc
Confidence            99999999876 2244445566552  1456666655433 334799999999994333 357999999987643210  


Q ss_pred             ------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        228 ------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       228 ------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                            ....+...+.|.|..+..+|.|.|+|.+.|..+....++
T Consensus       161 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          161 TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             CCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence                  000111135688999988999999999999876554443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=6e-18  Score=152.10  Aligned_cols=162  Identities=15%  Similarity=0.223  Sum_probs=108.9

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v  147 (471)
                      +|....+.+|++|+|.|. .+.|  .+.+.|+|++. ..+                  ..+..       ...+|+|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            345678999999999999 6553  68899999621 111                  11111       1348999999


Q ss_pred             CCCCCeEEEEEEEecCC-------c-eeeeeEEEEEeecc------------CCeeeecCCCceeEEcCCeEEEEEEccC
Q psy17058        148 TKADEGVYICSIQNAQG-------N-VFQDYASIQVDKRE------------MPRIRIHPNASQTFIVGDRADIQCVLEA  207 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~-------~-~~~~~~~l~v~~~~------------~p~~~~~~~~~~~v~~g~~~~L~C~~~~  207 (471)
                      +.+|+|.|.|.+.+..+       . .......|.|....            .+......+....+.+|+.++|.|.+ .
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~  164 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG-S  164 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC-S
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE-C
Confidence            99999999999998753       1 11223455554321            01111222334567899999999999 6


Q ss_pred             CCCCCeEEEEe--CCCCCCc------------CCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        208 GEPSPTQTWIR--PDNDGKF------------GPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       208 ~~p~~~v~W~~--~~~~~~~------------~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      +.+.+.+.|+|  ++..+..            ..++.+..  ....|.|.+++.+|+|.|+|.+.|..
T Consensus       165 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          165 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            67778999999  4443211            22333322  23479999999999999999999864

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.76  E-value=2.3e-17  Score=148.27  Aligned_cols=178  Identities=17%  Similarity=0.246  Sum_probs=116.9

Q ss_pred             CCceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCC------------------CcCCCceEEee----eceEEEeccC
Q psy17058        188 NASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDG------------------KFGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~------------------~~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      +....+.+|++++|.|.+... .+.+.+.|+|.....                  ....++.+...    ...|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            334568899999999998332 356899999853210                  01233444332    2269999999


Q ss_pred             CCCCeEEEEEEEcCCCc----eEEEEEEEEEeC--------------CceeeCCCccEEecCCCcEEEEEEEeecCCC-e
Q psy17058        245 TGDEGKYTCIAENSAGK----EVMNAYIHVLTL--------------PAVTITPSEYVSVRPGEPLTLECEATGRPMP-T  305 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~~----~~~~~~l~V~~~--------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~  305 (471)
                      .+|+|.|.|.+.|..+.    ....+.|.|..+              +.+... .....+.+|++++|.|.+.+.+.+ .
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~  173 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS-PAIMSASPGEKVTLTCSASSSVSSSH  173 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS-CSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC-CceEEEeCCCcEEEEEEEccCccceE
Confidence            99999999999986221    223456666654              333333 335688999999999999988877 8


Q ss_pred             EEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecCC
Q psy17058        306 VSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRP  366 (471)
Q Consensus       306 i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  366 (471)
                      +.|++.  +..+.              ............+|.|.+++.+|+|.|+|.|.|..... ..-..|.|...+
T Consensus       174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             EEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence            999984  22221              00111112245679999999999999999999854332 223467776554

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.76  E-value=2.4e-18  Score=156.02  Aligned_cols=197  Identities=16%  Similarity=0.210  Sum_probs=113.0

Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG  226 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~  226 (471)
                      .+++|.+.|.|.+.+..+. ......+.|.         .++....+.+|+.++|.|.+ .+ +...+.|+|........
T Consensus         3 ~~~~~~~~y~~~~~~~~g~-~~~~~~~~v~---------~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~   70 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGG-SGGGGGMKVI---------QTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFK   70 (270)
T ss_dssp             --------------------------CCCE---------EECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEE
T ss_pred             chhhhHHHHHHHHhccCCc-cccccceeEE---------eCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcE
Confidence            4578999999999887655 3222222222         12334578899999999998 33 67899999843221100


Q ss_pred             ------C------------CceEEe---eeceEEEeccCCCCCeEEEEEEEcCCC----ceEEEEEEEEEe------CCc
Q psy17058        227 ------P------------DVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAG----KEVMNAYIHVLT------LPA  275 (471)
Q Consensus       227 ------~------------~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~V~~------~p~  275 (471)
                            .            ++.+..   ....|.|.+++.+|+|.|.|.+.+...    .......|.|..      +|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~  150 (270)
T 3qib_D           71 FLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPE  150 (270)
T ss_dssp             EEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCE
T ss_pred             EEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCc
Confidence                  0            222221   134799999999999999999986432    222345677765      455


Q ss_pred             eeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcccc-------------cccCceeEEEEeecCCCC-
Q psy17058        276 VTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLER-------------DELTSRAVYTIASVRESD-  339 (471)
Q Consensus       276 ~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d-  339 (471)
                      +.+.+.....+..|+.++|.|.+.| .|.+ .+.|+++|..+......             ......+.|.|.....+| 
T Consensus       151 v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  230 (270)
T 3qib_D          151 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNP  230 (270)
T ss_dssp             EEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHST
T ss_pred             eEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccC
Confidence            5443332234456999999999998 6666 89999999887543211             111223567888887777 


Q ss_pred             CeEEEEEEEcCCCceE
Q psy17058        340 AGQYKCIGKNSAGTEE  355 (471)
Q Consensus       340 ~G~Y~C~a~n~~g~~~  355 (471)
                      .|.|+|.|.|......
T Consensus       231 ~g~YtC~v~~~~l~~~  246 (270)
T 3qib_D          231 RNHFRCQVQFYGLSEN  246 (270)
T ss_dssp             TCEEEEEEEECCBCTT
T ss_pred             CCeEEEEEEecCCCCc
Confidence            9999999999866543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.76  E-value=1.1e-17  Score=150.20  Aligned_cols=175  Identities=16%  Similarity=0.282  Sum_probs=118.6

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  .+.+.|+|......                   ...++.+...    ...|.|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEE-ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            3467899999999998 5544  57999998432211                   1233333321    2349999999


Q ss_pred             CCCCeEEEEEEEcC----CCceEEEEEEEEEe----------------CCceeeCCCccEEecCCCcEEEEEEEeecCCC
Q psy17058        245 TGDEGKYTCIAENS----AGKEVMNAYIHVLT----------------LPAVTITPSEYVSVRPGEPLTLECEATGRPMP  304 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~----~~~~~~~~~l~V~~----------------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  304 (471)
                      .+|+|.|.|.+.+.    .+.....+.|.|..                ++.+...+ ....+.+|++++|.|.+.+.|.+
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~G~~v~L~C~~~~~~~~  168 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP-SSLSASLGERVSITCRASQDIGS  168 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC-SEEEECTTCCEEEEEEESSCCTT
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC-CeEEEECCCCEEEEEEEecCCCc
Confidence            99999999999886    22233445677764                44444443 34688999999999999998888


Q ss_pred             eEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecCC
Q psy17058        305 TVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRP  366 (471)
Q Consensus       305 ~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  366 (471)
                      .+.|++..  ..+.              ............+|+|.+++.+|+|.|+|.|.|..+.. .....|.|...+
T Consensus       169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            99999853  2211              01111122345679999999999999999999965433 334678887654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.76  E-value=1.1e-17  Score=145.86  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=116.9

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--------------cCCCceEEe--eeceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|+|.+....              ...++.+..  ....|.|.+++.+|+|.|+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            9 SSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            35578899999999999 666889999998542211              123333332  2347999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEE---EeCCceeeCCCccEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCcc-------
Q psy17058        253 CIAENSAGK-EVMNAYIHV---LTLPAVTITPSEYVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNL-------  319 (471)
Q Consensus       253 C~~~~~~~~-~~~~~~l~V---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~-------  319 (471)
                      |.+.+..+. ......|.|   ..+|.+.+.+.. ..+..|+.+.|.|.+.|.++  +.+.|++++..+....       
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  166 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPS-SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQ  166 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCC
T ss_pred             EecccCCceEEcCCceEEEeccCCCceeeeeCCC-ceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCce
Confidence            999887542 233455666   456666655432 23456888999999998654  3899999998875421       


Q ss_pred             --cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        320 --ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       320 --~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                        ........+.|.|.....+|+|.|+|.|.|.........
T Consensus       167 ~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~  207 (213)
T 3r06_A          167 DSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVK  207 (213)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE
T ss_pred             eCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEE
Confidence              001112235788888888999999999999876554333

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.75  E-value=1.5e-17  Score=145.90  Aligned_cols=172  Identities=17%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             CCceeecCCCcEEEEee-CCCCCC---eEEEEeCCCCCCC-----------------C-------C-----cccCcEEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLP-----------------P-------N-----MIAGETLII  144 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~---~v~W~~~~~~~~~-----------------~-------~-----~~~~~~L~i  144 (471)
                      |+++.+.+|++|+|.|. .+.+.+   .|.|+|+++..+.                 .       .     ...+.+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            44678899999999999 655554   4899998543210                 0       0     003467999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC
Q psy17058        145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK  224 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~  224 (471)
                      .+++.+|+|.|+|.+.+..+........+.+.  .+|.....+. ......++.+.+.|.+..+.|.+.+.|++++..+.
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~  164 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI--AQPENHAEAQ-EVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA  164 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE--BCCEEEEEEC-CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeee--cCCceeeccc-ceeecceeeeeeeeeecCCCCCCEEEEEECCcccc
Confidence            99999999999999998776533333333333  3444433333 22455778888888776778999999999877633


Q ss_pred             cCCCceE-----EeeeceEEEeccCCCCCeEEEEEEEcCCCce--EEEEEEEEEe
Q psy17058        225 FGPDVEV-----YQELGVLRFNNIATGDEGKYTCIAENSAGKE--VMNAYIHVLT  272 (471)
Q Consensus       225 ~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~~  272 (471)
                      .......     ....+.|.|.++..+|+|.|+|.|.|..+..  ..++.|.|++
T Consensus       165 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          165 KDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            2111111     1113469999999999999999999987764  4445555543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=5.1e-19  Score=154.22  Aligned_cols=167  Identities=19%  Similarity=0.289  Sum_probs=115.5

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------CCCceEEee--eceEEEeccCCCCCeEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQE--LGVLRFNNIATGDEGKY  251 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~--~~~l~i~~~~~~d~G~Y  251 (471)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+|++.....              ..++.+...  ...|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            345578899999999998 6777778999986422111              234443332  34799999999999999


Q ss_pred             EEEEEcCCC-ce--EEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccccc
Q psy17058        252 TCIAENSAG-KE--VMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLERD  322 (471)
Q Consensus       252 ~C~~~~~~~-~~--~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~  322 (471)
                      +|.+.|... ..  .....|.|.    .+|.+.+.+.. ..+.+|+.+.|.|.+.|. |+ +.+.|++++..+.......
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  163 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT  163 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC
Confidence            999997322 21  223456664    34555544322 234579999999999986 55 7999999998775332100


Q ss_pred             ---c----cCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        323 ---E----LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       323 ---~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                         .    ....+.|.|.++..+|+|.|+|.|.|..+..++
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          164 KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             CceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence               0    112356889999999999999999999876443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.75  E-value=1.2e-17  Score=141.13  Aligned_cols=155  Identities=16%  Similarity=0.238  Sum_probs=110.2

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCC-CCC--------------CcCCCceEEeeeceEEEeccCCCCCeEEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD-NDG--------------KFGPDVEVYQELGVLRFNNIATGDEGKYTC  253 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~-~~~--------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  253 (471)
                      ....+.+|++++|.|.+....+.+.+.|+|.+ ..+              ....++.+...++.|.|.+++..|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            34567899999999988333446799999952 211              111344442346789999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCceeEEEE
Q psy17058        254 IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI  332 (471)
Q Consensus       254 ~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i  332 (471)
                      .+.+.. .....+.|.|..++..   |  .+. ..+.++.|.|.+ .| |.+.+.|++++..+.       .....+|.+
T Consensus        87 ~v~~~~-~~~~~~~L~V~~~~~~---P--~i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-------~~~~~~l~~  151 (180)
T 2dru_A           87 RMLHET-EDQWKITMEVYEMVSK---P--MIY-WECSNATLTCEVLEG-TDVELKLYQGKEHLR-------SLRQKTMSY  151 (180)
T ss_dssp             EEESSS-EEEEEEEEEEECCCCC---C--EEE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEE-------EESSSEEEE
T ss_pred             EEEcCC-eEEEEEEEEEECCCCC---C--EEE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECc-------CCCCCEEEE
Confidence            998776 5566778888764321   1  111 235679999999 66 889999999998764       122345666


Q ss_pred             eecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        333 ASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ..  .+|+|.|+|.|.|..+..+....+
T Consensus       152 ~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          152 QW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EE--hhcCccEEEEEecCcCccccceeE
Confidence            33  789999999999999988766544

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.75  E-value=7.5e-18  Score=146.57  Aligned_cols=165  Identities=18%  Similarity=0.255  Sum_probs=114.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC------------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK------------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~------------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|++++|.|.+ .+.+  .+.+.|+|++....                  ...++.+..+    ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             CSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            4467899999999999 5544  47899998642111                  1234444432    23799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCCCcc
Q psy17058        246 GDEGKYTCIAENSAGKEVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFDRNL  319 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~  319 (471)
                      +|+|.|.|.+.+.. .......|.|..    +|.+...+.. ..+.+|+.+.|.|.+.|. |.+ .+.|++++..+....
T Consensus        88 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           88 EDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             ccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            99999999998863 222234566652    3555443322 245789999999999986 888 999999987643110


Q ss_pred             --cc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        320 --ER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       320 --~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                        ..   ......+.|.|..+..+| |.|+|.|.|..|......
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence              00   111234678999988877 999999999999876544

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.75  E-value=9.6e-18  Score=150.42  Aligned_cols=176  Identities=16%  Similarity=0.265  Sum_probs=119.0

Q ss_pred             CceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CC-----------------CcCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DG-----------------KFGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~-----------------~~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|++++|.|.+ .+.+  .+.+.|+|...  ..                 ....++.+...    ...|.|.++
T Consensus         9 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            9 GAELVKPGASVRLSCTA-SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeecCCCcEEEEEEe-eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            34578899999999998 5533  67999998321  11                 01233444332    224999999


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEEEEe---------------CCceeeCCCccEEecCCCcEEEEEEEeecCCC---
Q psy17058        244 ATGDEGKYTCIAENSAGKE-VMNAYIHVLT---------------LPAVTITPSEYVSVRPGEPLTLECEATGRPMP---  304 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~---------------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---  304 (471)
                      +.+|+|.|.|.+.|..+.. .....|.|..               ++.+...+ ....+.+|++++|.|.+.+.+.+   
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~  166 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP-ASLAVSLGQRATISCRASENVDRYGN  166 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC-SEEEECTTSCEEEEEEESSCCEETTE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC-CeEEEeCCCCEEEEEEecCccccCCC
Confidence            9999999999999865443 3345666663               34444443 34688999999999999988876   


Q ss_pred             -eEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecCC
Q psy17058        305 -TVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRP  366 (471)
Q Consensus       305 -~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  366 (471)
                       .+.|+++.  ..+.              ............+|.|.+++.+|+|.|+|.|.|..+.. .....|.|...+
T Consensus       167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence             89999853  2221              01111112345679999999999999999999975433 334667777664

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=2.5e-17  Score=150.21  Aligned_cols=174  Identities=16%  Similarity=0.284  Sum_probs=118.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|++++|.|.+ .+.+  .+.+.|+|++....                   ...++.+...    ...|.|.++
T Consensus        34 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            35678899999999998 5554  57899999753211                   1234444331    357999999


Q ss_pred             CCCCCeEEEEEEEcCCC---c--eEEEEEEEEEeCC---------------ceeeCCCccEEecCCCcEEEEEEEeecCC
Q psy17058        244 ATGDEGKYTCIAENSAG---K--EVMNAYIHVLTLP---------------AVTITPSEYVSVRPGEPLTLECEATGRPM  303 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~---~--~~~~~~l~V~~~p---------------~~~~~~~~~~~~~~g~~v~l~C~~~g~p~  303 (471)
                      +.+|+|.|.|.+.|..+   .  ....+.|.|...|               .+... +....+.+|++++|.|.+.+.| 
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~G~~v~L~C~~~~~~-  190 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQS-PAIMSASPGEKVTITCSASSSV-  190 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEE-CSEEEECTTCCEEEEEEESSCC-
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecC-CCEEEEcCCCcEEEEEEecCCC-
Confidence            99999999999998865   1  1133467777543               22222 2345789999999999999988 


Q ss_pred             CeEEEEe--CCccCCC--------------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecC
Q psy17058        304 PTVSWVK--YIAPFDR--------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHR  365 (471)
Q Consensus       304 ~~i~W~~--~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  365 (471)
                      +.+.|+|  ++..+..              ...........+|+|.+++.+|+|.|+|.|.|..+.. .....|.|...
T Consensus       191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  269 (282)
T 1qok_A          191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRA  269 (282)
T ss_dssp             SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEecc
Confidence            8999999  5554420              0110112345689999999999999999999864322 33466777643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.75  E-value=4.9e-17  Score=146.60  Aligned_cols=168  Identities=16%  Similarity=0.364  Sum_probs=114.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCC------CCeEEEEeCC-CCCC--------------CCCcc-----cCcEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDP------SATIKWSKDN-QEQL--------------PPNMI-----AGETL  142 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p------~~~v~W~~~~-~~~~--------------~~~~~-----~~~~L  142 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+      .+.+.|+|+. +..+              ..+..     ....|
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L   83 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL   83 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence            3567777888999999999999999 6665      6789999963 2111              11211     23489


Q ss_pred             EEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc----------------CCeeeecCCCceeEEcCCeEEEEEEcc
Q psy17058        143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE----------------MPRIRIHPNASQTFIVGDRADIQCVLE  206 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----------------~p~~~~~~~~~~~v~~g~~~~L~C~~~  206 (471)
                      +|.+++.+|+|.|.|.+.+..+........|.|....                .|.+.+.......+.+|++++|.|.+ 
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-  162 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKA-  162 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEE-
T ss_pred             EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEE-
Confidence            9999999999999999988654322334556665321                12232322233468899999999999 


Q ss_pred             CCCC--CCeEEEEeCCC--CCCc-----------------CCCceEEe----eeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        207 AGEP--SPTQTWIRPDN--DGKF-----------------GPDVEVYQ----ELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       207 ~~~p--~~~v~W~~~~~--~~~~-----------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      .+.+  .+.+.|+|+..  ....                 ..++.+..    ....|.|.+++.+|+|.|+|.+.|.
T Consensus       163 ~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          163 SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            4454  37999999742  2110                 12333321    1347999999999999999999985

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=6.4e-19  Score=153.57  Aligned_cols=163  Identities=20%  Similarity=0.384  Sum_probs=111.9

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCC--------------CCCcc-----cCcEEEEcCCCCCCCeEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQL--------------PPNMI-----AGETLIINGITKADEGVYI  156 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~--------------~~~~~-----~~~~L~i~~v~~~D~G~Y~  156 (471)
                      |..+.+.+|++++|.|. .+.+.+.+.|+|++ +..+              ..+..     ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            77889999999999999 77777789999863 2211              11211     2348999999999999999


Q ss_pred             EEEEecCCc--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCce-
Q psy17058        157 CSIQNAQGN--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVE-  230 (471)
Q Consensus       157 C~~~~~~~~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~-  230 (471)
                      |.+.|....  .......+.|..  ..+|.+.+.+.. ..+.+|+.++|.|.+....|. +.++|++++..+....... 
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC
Confidence            999973222  112234455532  245666554432 234579999999999444455 7999999986643221100 


Q ss_pred             E------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        231 V------YQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       231 ~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .      ....+.|.|.++..+|+|.|+|.|.|....
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            0      122356899999999999999999998765

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.75  E-value=2.7e-17  Score=149.46  Aligned_cols=177  Identities=19%  Similarity=0.222  Sum_probs=116.2

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--------------cCCCceEEee--eceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--------------FGPDVEVYQE--LGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|++++|.|.+ .+.|.+.+.|+|++....              ...++.+...  ...|.|.+++.+|+|.|.
T Consensus        20 ~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   98 (276)
T 3auv_A           20 SSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY   98 (276)
T ss_dssp             SEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence            35567899999999999 677888999999753210              1223443321  237999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEEEeCC-------------ceeeCCCccEEecCCCcEEEEEEEeecC--CCeEEEEeCCc--c
Q psy17058        253 CIAENSAGK-EVMNAYIHVLTLP-------------AVTITPSEYVSVRPGEPLTLECEATGRP--MPTVSWVKYIA--P  314 (471)
Q Consensus       253 C~~~~~~~~-~~~~~~l~V~~~p-------------~~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~--~  314 (471)
                      |.+.|..+. ......|.|...|             .+.+..+....+.+|++++|.|.+.+.|  .+.+.|++++.  .
T Consensus        99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~  178 (276)
T 3auv_A           99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC  178 (276)
T ss_dssp             EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred             EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence            999986543 2223456665542             2333323456889999999999999876  47999999642  1


Q ss_pred             CC-------------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEcCC---Cc--eEEEEEEEEecCC
Q psy17058        315 FD-------------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKNSA---GT--EEKVITVAVEHRP  366 (471)
Q Consensus       315 ~~-------------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~--~~~~~~l~V~~~p  366 (471)
                      ..                   ......  ......+|.|.+++.+|+|.|+|.|.|..   +.  ......|.|...+
T Consensus       179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~  256 (276)
T 3auv_A          179 LEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS  256 (276)
T ss_dssp             EEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred             cEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence            10                   000000  01234589999999999999999999983   21  1233567776543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.75  E-value=1.5e-17  Score=146.44  Aligned_cols=175  Identities=15%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             CceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC-------------------cCCCceEEe----eeceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK-------------------FGPDVEVYQ----ELGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~-------------------~~~~~~~~~----~~~~l~i~~~  243 (471)
                      ....+.+|++++|.|.+ .+.+  ...+.|+|++....                   ...++.+..    ....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            8 GAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             SEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            34567899999999999 5555  57899999752111                   123444432    1357999999


Q ss_pred             CCCCCeEEEEEEEcCCCc-eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCC
Q psy17058        244 ATGDEGKYTCIAENSAGK-EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFD  316 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~  316 (471)
                      +.+|+|.|.|.+.+.... ....+.|.|..    +|.+.+.... ..+.+|+.++|.|.+.|. |.+ .+.|++++..+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  165 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG  165 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence            999999999999886321 12234677764    3444433221 245689999999999985 776 999999987653


Q ss_pred             Ccc--c-c--cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        317 RNL--E-R--DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       317 ~~~--~-~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ...  . .  ......+.|.|..+..+| |.|+|.|.|..+.......+.+..+|
T Consensus       166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred             cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence            110  0 0  112234678999988888 99999999988877777777666554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.75  E-value=2.9e-17  Score=147.63  Aligned_cols=163  Identities=13%  Similarity=0.217  Sum_probs=108.0

Q ss_pred             EEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC-------------------CCCcc-------cCcEEEEc
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL-------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~-------------------~~~~~-------~~~~L~i~  145 (471)
                      ...|.+..+.+|++|+|.|. .+  .+.+.+.|+|......                   ..+..       ...+|.|.
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            34566788999999999999 44  3578999999521110                   11111       12379999


Q ss_pred             CCCCCCCeEEEEEEEecCCc---eeeeeEEEEEeec------------cCCeeeecCCCceeEEcCCeEEEEEEccCCCC
Q psy17058        146 GITKADEGVYICSIQNAQGN---VFQDYASIQVDKR------------EMPRIRIHPNASQTFIVGDRADIQCVLEAGEP  210 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~---~~~~~~~l~v~~~------------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p  210 (471)
                      +++.+|+|.|.|.+.+..+.   .......|.|...            ..+.+ ...+....+.+|+.++|.|.+ .+.+
T Consensus        92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~G~~v~L~C~~-~~~~  169 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVL-TQSPAIMSASPGEKVTLTCSA-SSSV  169 (257)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCE-ECSCSEEEECTTCCEEEEEEE-SSCC
T ss_pred             CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEE-EcCCceEEEeCCCcEEEEEEE-ccCc
Confidence            99999999999999986211   1233445666533            12333 333345678899999999999 5566


Q ss_pred             CC-eEEEEeCC--CCCCc------------CCCceEEee--eceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        211 SP-TQTWIRPD--NDGKF------------GPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       211 ~~-~v~W~~~~--~~~~~------------~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .+ .+.|+|..  .....            ..++.....  ...|.|.+++.+|+|.|.|.+.+..
T Consensus       170 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          170 SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            66 99999853  22110            123332221  2359999999999999999998753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.75  E-value=2.6e-17  Score=147.86  Aligned_cols=175  Identities=17%  Similarity=0.262  Sum_probs=113.8

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQEQL--------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~~  146 (471)
                      +|....+.+|++|+|.|. .+.+  .+.+.|++......                    ..+..       ...+|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            345677999999999999 5544  67899998521111                    01111       233599999


Q ss_pred             CCCCCCeEEEEEEEecCC---ceeeeeEEEEEeec--------------cCCeeeecCCCceeEEcCCeEEEEEEccCCC
Q psy17058        147 ITKADEGVYICSIQNAQG---NVFQDYASIQVDKR--------------EMPRIRIHPNASQTFIVGDRADIQCVLEAGE  209 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~v~~~--------------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~  209 (471)
                      ++.+|+|.|.|.+.+...   ........|.|...              .+|.+... +....+.+|++++|.|.+ .+.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~G~~v~L~C~~-~~~  165 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQS-PSSLSASLGERVSITCRA-SQD  165 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEE-CSEEEECTTCCEEEEEEE-SSC
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcC-CCeEEEECCCCEEEEEEE-ecC
Confidence            999999999999988621   11333455666531              13444333 345678899999999999 667


Q ss_pred             CCCeEEEEeCCC--CCC------------cCCCceEEee--eceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEEe
Q psy17058        210 PSPTQTWIRPDN--DGK------------FGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVLT  272 (471)
Q Consensus       210 p~~~v~W~~~~~--~~~------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~  272 (471)
                      +.+.+.|+|...  ...            ...++.....  ...|.|.+++.+|+|.|+|.+.+..... .....|.|..
T Consensus       166 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          166 IGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             CTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            777999999532  111            1233333221  2359999999999999999998854332 2335566654


Q ss_pred             C
Q psy17058        273 L  273 (471)
Q Consensus       273 ~  273 (471)
                      .
T Consensus       246 ~  246 (256)
T 3umt_A          246 A  246 (256)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.75  E-value=1.8e-18  Score=153.12  Aligned_cols=170  Identities=19%  Similarity=0.360  Sum_probs=98.3

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC-C--------------CCCcc-----cCcEEEEcCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ-L--------------PPNMI-----AGETLIINGIT  148 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~-~--------------~~~~~-----~~~~L~i~~v~  148 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+.+.+.|+|++... .              ..+..     ...+|.|.+++
T Consensus        22 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  101 (233)
T 3bqu_C           22 AETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENML  101 (233)
T ss_dssp             -CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----
T ss_pred             cceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCC
Confidence            4566777788899999999999999 66666789999963211 1              11111     22379999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG  226 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~  226 (471)
                      .+|+|.|.|.+.+..+........+.|... .+|.+.+.+... .+.+|+.++|.|.+....|.+ .++|+|++..+...
T Consensus       102 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          102 SEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             HHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            999999999998865532222334555432 256666544432 234799999999994435553 89999998765433


Q ss_pred             -CC--------ceEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        227 -PD--------VEVYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       227 -~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                       ..        .......+.|.|.....+|+|.|+|.|.|...
T Consensus       181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          181 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             ceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence             00        00111234688999999999999999998654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.75  E-value=1.7e-17  Score=145.36  Aligned_cols=167  Identities=20%  Similarity=0.286  Sum_probs=115.7

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC---------------------cCCCceEEee----eceEEEec
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK---------------------FGPDVEVYQE----LGVLRFNN  242 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~---------------------~~~~~~~~~~----~~~l~i~~  242 (471)
                      ...+.+|++++|.|.+ .+.+  .+.+.|+|++....                     ...++.+..+    ...|.|.+
T Consensus         9 ~~~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVA-SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CEEEcCCCeEEEEEEE-cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            4567899999999999 5444  67999999642100                     0234444321    23799999


Q ss_pred             cCCCCCeEEEEEEEcCCCce-E--EEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCc
Q psy17058        243 IATGDEGKYTCIAENSAGKE-V--MNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIA  313 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~  313 (471)
                      ++.+|+|.|.|.+.+..+.. .  ..+.|.|..    +|.+...+.. ..+.+|+.+.|.|.+.|. |.| .+.|++++.
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            99999999999999875321 1  345666652    4554443322 245789999999999986 888 999999887


Q ss_pred             cCC-----CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        314 PFD-----RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       314 ~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...     ...........+.|.|.....+| |.|+|.|.|..|..++++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          167 SSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            421     10000122235678999988877 9999999999998776654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.74  E-value=2.7e-17  Score=147.63  Aligned_cols=171  Identities=18%  Similarity=0.281  Sum_probs=114.1

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      .|..+.+.+|++++|.|. .+.+  .+.+.|+|++ +..+                   ..+..       ...+|+|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            466788999999999999 6554  6789999952 1111                   11111       134899999


Q ss_pred             CCCCCCeEEEEEEEecCCc----eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-----eEEEE
Q psy17058        147 ITKADEGVYICSIQNAQGN----VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-----TQTWI  217 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-----~v~W~  217 (471)
                      ++.+|+|.|+|.+.+..+.    .......|.|.  ..|.+...+ ....+.+|++++|.|.+ .+.|.+     .+.|+
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~--~~~~v~~~p-~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~  161 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS--SDIELTQTP-LSLPVSLGDQASISCRS-SQSIVHSNGNTYLEWY  161 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC--CCCCEEEEC-SEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeec--ccccEEecC-cEEEEecCCcEEEEeEe-cCcccccccceEEEEE
Confidence            9999999999999987541    12223344443  445444333 44568899999999999 555544     99999


Q ss_pred             e--CCCCCC------------cCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEE
Q psy17058        218 R--PDNDGK------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVL  271 (471)
Q Consensus       218 ~--~~~~~~------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~  271 (471)
                      |  ++..+.            ...++....  ....|.|.+++.+|+|.|+|.+.+.... ......|.|.
T Consensus       162 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          162 LQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            9  454321            022333322  2347999999999999999999875432 2223455554

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.74  E-value=5.1e-17  Score=145.95  Aligned_cols=168  Identities=14%  Similarity=0.249  Sum_probs=113.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCC-C-------------------CCCcc-------cC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQ-L-------------------PPNMI-------AG  139 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~-~-------------------~~~~~-------~~  139 (471)
                      .++.+...+..+.+.+|++|+|.|. .+  .+.+.+.|+|..... .                   ..+..       ..
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            4667777888999999999999999 44  367789999852111 0                   11111       12


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEec-----------CCceeeeeEEEEEeecc-------------CCeeeecCCCceeEEc
Q psy17058        140 ETLIINGITKADEGVYICSIQNA-----------QGNVFQDYASIQVDKRE-------------MPRIRIHPNASQTFIV  195 (471)
Q Consensus       140 ~~L~i~~v~~~D~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~-------------~p~~~~~~~~~~~v~~  195 (471)
                      .+|+|.+++.+|+|.|.|.+.+.           ..........|.|....             ++.+. ..+....+.+
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~  163 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLT-QAPGTLSLSP  163 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEE-EECSEEEECT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEE-ecCCeEEEeC
Confidence            36999999999999999999886           12213334556665321             22333 3344567889


Q ss_pred             CCeEEEEEEccCCCCC-CeEEEEeCC--CCCC------------cCCCceEEee--eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        196 GDRADIQCVLEAGEPS-PTQTWIRPD--NDGK------------FGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~-~~v~W~~~~--~~~~------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      |++++|.|.+ .+.+. +.+.|+|..  ....            ...++.+...  ...|.|.+++.+|+|.|.|.+.|.
T Consensus       164 G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  242 (256)
T 3juy_B          164 GERATFSCRS-SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGA  242 (256)
T ss_dssp             TSCEEEEEEE-SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred             CCCEEEEEEE-CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence            9999999999 55555 899999842  2211            1233333222  335999999999999999999875


Q ss_pred             C
Q psy17058        259 A  259 (471)
Q Consensus       259 ~  259 (471)
                      .
T Consensus       243 ~  243 (256)
T 3juy_B          243 S  243 (256)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.74  E-value=1.9e-17  Score=145.76  Aligned_cols=176  Identities=18%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      +|..+.+.+|++|+|.|. .+.+  .+.+.|+|++. ...                   ..+..       ...+|+|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            466788999999999999 6555  67899999732 111                   11111       235899999


Q ss_pred             CCCCCCeEEEEEEEecCCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCC
Q psy17058        147 ITKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDG  223 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~  223 (471)
                      ++.+|+|.|.|.+.+...........|.|..  ..+|.+....+. ..+.+|+.++|.|.+....|.+ .++|++++..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            9999999999999885322122344666653  234555544332 2456899999999995445766 99999998753


Q ss_pred             CcC--CCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCC
Q psy17058        224 KFG--PDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       224 ~~~--~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p  274 (471)
                      ...  ...   ..+...+.|.|..+..+| |.|+|.+.|..........+.+..+|
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence            211  110   112224578999988878 99999999977665555555544443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=4.6e-18  Score=150.57  Aligned_cols=170  Identities=19%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCC--------------cCCCceEEe--eeceEEEeccCCCCCeEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGK--------------FGPDVEVYQ--ELGVLRFNNIATGDEGKY  251 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~--------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y  251 (471)
                      ....+.+|++++|.|.+....+.+ .+.|+|++....              ...++....  ....|.|.+++.+|+|.|
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  106 (234)
T 2j6e_L           27 PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADY  106 (234)
T ss_dssp             SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEE
T ss_pred             CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEE
Confidence            445678999999999993333334 799999742111              123333332  234799999999999999


Q ss_pred             EEEEEcCCCc---eEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccc--
Q psy17058        252 TCIAENSAGK---EVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLE--  320 (471)
Q Consensus       252 ~C~~~~~~~~---~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--  320 (471)
                      .|.+.+..+.   ....+.|.|.    .+|.+.+.+... ...+|+.+.|.|.+.|. |+ +.+.|++++..+.....  
T Consensus       107 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          107 YCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            9999998762   2223455553    344444433221 23468899999999985 44 38999999988754311  


Q ss_pred             ------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        321 ------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       321 ------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                            .......+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  230 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  230 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence                  011223467999999999999999999999887665543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.74  E-value=5.9e-17  Score=145.53  Aligned_cols=161  Identities=21%  Similarity=0.296  Sum_probs=108.2

Q ss_pred             ceeEEcCCeEEEEEEccCCC--CCCeEEEEeCCCCCC--------------cCCCceEEee--eceEEEeccCCCCCeEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGK--------------FGPDVEVYQE--LGVLRFNNIATGDEGKY  251 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y  251 (471)
                      ...+.+|++++|.|.+ .+.  +.+.+.|+|.+....              ...++.+...  ...|.|.+++.+|+|.|
T Consensus        11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             EEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            4578899999999999 444  678999998542211              1223333322  23699999999999999


Q ss_pred             EEEEEcCCCc---eEEEEEEEEEeCCc-------------------eeeCCCccEEecCCCcEEEEEEEeecC--CCeEE
Q psy17058        252 TCIAENSAGK---EVMNAYIHVLTLPA-------------------VTITPSEYVSVRPGEPLTLECEATGRP--MPTVS  307 (471)
Q Consensus       252 ~C~~~~~~~~---~~~~~~l~V~~~p~-------------------~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~  307 (471)
                      .|.+.+..+.   ....+.|.|...+.                   +.+.......+.+|++++|.|.+.+.+  .+.+.
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  169 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS  169 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence            9999986542   22335677765441                   112212234688999999999999876  67999


Q ss_pred             EEeCC--ccCCC-------------------ccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        308 WVKYI--APFDR-------------------NLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       308 W~~~~--~~~~~-------------------~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      |+++.  ..+..                   ...  ........+|+|.+++.+|+|.|+|.|.|..
T Consensus       170 W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          170 WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            99863  22210                   000  0011345679999999999999999999964

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=1.8e-17  Score=146.99  Aligned_cols=170  Identities=15%  Similarity=0.186  Sum_probs=117.5

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--------------cCCCceEEe--eeceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|++++|.|.+ .+.+.+.+.|+|.+....              ...++....  ....|.|.+++.+|+|.|+
T Consensus        32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (237)
T 3sob_L           32 SSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY  110 (237)
T ss_dssp             SEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence            34678899999999999 666888999999542211              123333332  2447999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEEE---eCCceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEEeCCccCCCcc-------
Q psy17058        253 CIAENSAGK-EVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWVKYIAPFDRNL-------  319 (471)
Q Consensus       253 C~~~~~~~~-~~~~~~l~V~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~~~~~~~~~~~-------  319 (471)
                      |.+.+..+. ......|.|.   .+|.+.+.+.. ..+.+|+.+.|.|.+.+ .| .+.+.|++++..+....       
T Consensus       111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~  189 (237)
T 3sob_L          111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ  189 (237)
T ss_dssp             EEECSSSSCEECCCEEEEEECCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCC
T ss_pred             EeeccCCceEEcCcEEEEEecCCCCCceEEeCCC-hhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeeccccc
Confidence            999886543 2233455553   34555443322 23345889999999998 45 47999999998876421       


Q ss_pred             --cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        320 --ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       320 --~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                        ........+.|.|.....+|+|.|+|.|.|..........+
T Consensus       190 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          190 DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             ccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence              00111224678899999999999999999998765544443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=4.4e-17  Score=144.84  Aligned_cols=160  Identities=19%  Similarity=0.246  Sum_probs=111.3

Q ss_pred             CceeEEcCCeEEEEEEccCCCC----CCeEEEEeCCCC--CC------------cCCCceEEee--eceEEEeccCCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP----SPTQTWIRPDND--GK------------FGPDVEVYQE--LGVLRFNNIATGDE  248 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p----~~~v~W~~~~~~--~~------------~~~~~~~~~~--~~~l~i~~~~~~d~  248 (471)
                      ....+.+|+.++|.|.+ .+.|    .+.+.|+|++..  ..            ...++.+...  ...|.|.+++.+|+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            9 ASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             SEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            44578899999999999 6666    678999996421  11            1223333321  23799999999999


Q ss_pred             eEEEEEEEcCCCc-eEEEEEEEEEeCC-----ceeeCCCccEEecCCCcEEEEEEEeecCC--CeEEEEeCC--ccCC--
Q psy17058        249 GKYTCIAENSAGK-EVMNAYIHVLTLP-----AVTITPSEYVSVRPGEPLTLECEATGRPM--PTVSWVKYI--APFD--  316 (471)
Q Consensus       249 G~Y~C~~~~~~~~-~~~~~~l~V~~~p-----~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~--~~~~--  316 (471)
                      |.|+|.+.|..+. ....+.|.|...+     .+.+.......+.+|++++|.|.+.+.|.  +.+.|+++.  ..+.  
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~  167 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI  167 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred             EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence            9999999987554 3344567776542     23333234567899999999999998774  589999962  2221  


Q ss_pred             -----------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        317 -----------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       317 -----------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                                       ......  ......+|.|.+++.+|+|.|+|.|.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          168 GRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence                             000000  113346899999999999999999985

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=148.65  Aligned_cols=169  Identities=15%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             eeecCCCceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCC-------------------cCCCceEEee----eceE
Q psy17058        183 IRIHPNASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVL  238 (471)
Q Consensus       183 ~~~~~~~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l  238 (471)
                      ....+.....+.+|++++|.|.+... .+.+.+.|+|......                   ...++.+..+    ...|
T Consensus         8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   87 (256)
T 3juy_B            8 VQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYM   87 (256)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             EEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEE
Confidence            33444556788999999999998432 3667899997432111                   1234444421    2359


Q ss_pred             EEeccCCCCCeEEEEEEEcC------------CCceEEEEEEEEEeC---------------CceeeCCCccEEecCCCc
Q psy17058        239 RFNNIATGDEGKYTCIAENS------------AGKEVMNAYIHVLTL---------------PAVTITPSEYVSVRPGEP  291 (471)
Q Consensus       239 ~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~V~~~---------------p~~~~~~~~~~~~~~g~~  291 (471)
                      .|.+++.+|+|.|.|.+.+.            .........|.|...               +.+... .....+.+|++
T Consensus        88 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~  166 (256)
T 3juy_B           88 ELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQA-PGTLSLSPGER  166 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEE-CSEEEECTTSC
T ss_pred             EECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEec-CCeEEEeCCCC
Confidence            99999999999999999886            222334456777653               233333 34568899999


Q ss_pred             EEEEEEEeecCC-CeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        292 LTLECEATGRPM-PTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       292 v~l~C~~~g~p~-~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      ++|.|.+.+.+. +.+.|++.  +..+.              ............+|.|.+++.+|+|.|+|.|.|..+
T Consensus       167 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          167 ATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             EEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             EEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            999999998776 79999984  22221              011111123456799999999999999999998644

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.74  E-value=2.2e-17  Score=144.56  Aligned_cols=169  Identities=17%  Similarity=0.255  Sum_probs=111.9

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      +|..+.+.+|++++|.|. .+.+  .+.+.|+|++ +..+                   ..+..       ...+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            456778999999999999 5544  6889999973 2211                   11111       135899999


Q ss_pred             CCCCCCeEEEEEEEecCCc---eeeeeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCC
Q psy17058        147 ITKADEGVYICSIQNAQGN---VFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPD  220 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~~---~~~~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~  220 (471)
                      ++.+|+|.|+|.+.+..+.   .......+.|...  .+|.+...++.. .+.+|+.++|.|.+....|.+ .++|++++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCS-SSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCcc-ccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            9999999999999987632   1223455666532  235555443322 456899999999994437888 99999998


Q ss_pred             CCCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        221 NDGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       221 ~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      ..+......     ......+.|.|.... .|.|.|+|.|.|..+.......
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEE
T ss_pred             cccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEe
Confidence            763211110     111123468885444 4669999999998776554443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.74  E-value=3.1e-17  Score=147.33  Aligned_cols=167  Identities=16%  Similarity=0.309  Sum_probs=113.5

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC----------------CCCc-------ccCcEEEEcCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL----------------PPNM-------IAGETLIINGI  147 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~----------------~~~~-------~~~~~L~i~~v  147 (471)
                      ..|...|..+.+.+|++++|.|. .+.+.+.+.|+|......                ..+.       ....+|+|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            35666778889999999999999 677889999999521110                0011       12447999999


Q ss_pred             CCCCCeEEEEEEEecCCc---eeeeeEEEEEee------------------ccCCeeeecCCCceeEEcCCeEEEEEEcc
Q psy17058        148 TKADEGVYICSIQNAQGN---VFQDYASIQVDK------------------REMPRIRIHPNASQTFIVGDRADIQCVLE  206 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~---~~~~~~~l~v~~------------------~~~p~~~~~~~~~~~v~~g~~~~L~C~~~  206 (471)
                      +.+|+|.|+|.+.+..+.   .......|.|..                  ..+|.+... +....+.+|+.++|.|.+ 
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~~-  161 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQS-PRNKVTVTGENVTLSCRQ-  161 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEES-CSEEEEETTCCEEECEEE-
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEec-CCEEEEeCCCcEEEEEEc-
Confidence            999999999999986542   122334566653                  123344333 345567799999999999 


Q ss_pred             CCCCCCeEEEEeCCCCCCc-----------------CCCceEEe---eeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        207 AGEPSPTQTWIRPDNDGKF-----------------GPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       207 ~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .+. .+.+.|+|.......                 ..++.+..   ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus       162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            444 678999985432111                 11222211   2347999999999999999999887654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.74  E-value=7.9e-18  Score=140.98  Aligned_cols=152  Identities=16%  Similarity=0.179  Sum_probs=108.8

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC------------cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK------------FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      ..+.+|++++|.|.+ .. |.+.+.|+|++..+.            ...+..+...++.|.|.+++.+|+|.|.|.+.+.
T Consensus         5 v~~~~G~~VtL~c~~-~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEETTCCEEECCCC-SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEcCCCEEEcCCC-CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            457799999999988 43 788999999875321            1223333334578999999999999999999887


Q ss_pred             CCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCC
Q psy17058        259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES  338 (471)
Q Consensus       259 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  338 (471)
                      .+  ...+.|.|..++...     .+.... ....|.|.+.+.|.|.+.|++++..+...       ....+.+.  ..+
T Consensus        83 ~~--~~~~~L~V~~~~~~p-----~i~~~~-~~~~L~C~~~~~p~p~i~W~~~~~~l~~~-------~~~~l~~~--~~~  145 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVSKP-----MIYWEC-SNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQ--WTN  145 (171)
T ss_dssp             CS--CEEEEEEEECCCCCC-----EEEEET-TTTEEEEECSSCSSCEEEEEETTEEEEEE-------SSSEEEEE--CSC
T ss_pred             CC--cEEEEEEEECcCCCC-----EEEEec-CCcEEEEEeCCCCCcEEEEEECCEECcCC-------cceEEEEe--ccC
Confidence            76  667788887653211     111111 11379999998899999999998876421       12233333  377


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEE
Q psy17058        339 DAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       339 d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      |+|.|+|.|.|..|..+..+.|.
T Consensus       146 ~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          146 LRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCC
T ss_pred             CCceEEEEEEcccCcccceeEEe
Confidence            89999999999999988776654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.74  E-value=4.5e-17  Score=144.96  Aligned_cols=161  Identities=16%  Similarity=0.227  Sum_probs=108.6

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC--CC------------cCCCceEEee--eceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND--GK------------FGPDVEVYQE--LGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~--~~------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|++++|.|.+ .+.|.+.+.|+|+...  ..            ...++.+...  ...|.|.+++.+|+|.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (242)
T 2znx_A            9 ATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (242)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            34578899999999999 6777889999996421  10            1233433322  347999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEEEeCCc------------eeeCCCccEEecCCCcEEEEEEEeecC--CCeEEEEeCC--ccC
Q psy17058        253 CIAENSAGK-EVMNAYIHVLTLPA------------VTITPSEYVSVRPGEPLTLECEATGRP--MPTVSWVKYI--APF  315 (471)
Q Consensus       253 C~~~~~~~~-~~~~~~l~V~~~p~------------~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~--~~~  315 (471)
                      |.+.|..+. ......|.|..+|.            +.+.......+.+|++++|.|.+.+.|  .+.+.|+++.  ..+
T Consensus        88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~  167 (242)
T 2znx_A           88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL  167 (242)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred             EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence            999987543 22335677765442            112211224689999999999999876  4689999953  222


Q ss_pred             C------------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        316 D------------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       316 ~------------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .                  ......  ......+|.|.+++.+|+|.|+|.|.|.
T Consensus       168 ~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          168 EYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             EEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            1                  000000  1123468999999999999999999984

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.74  E-value=3.1e-17  Score=147.61  Aligned_cols=167  Identities=18%  Similarity=0.337  Sum_probs=104.3

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC--------------------CCc-------ccCcEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------------PNM-------IAGETL  142 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~--------------------~~~-------~~~~~L  142 (471)
                      +|.|...|..+.+.+|++|+|.|. .+.+.+.+.|+|.......                    .+.       ....+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            456777788999999999999999 7777889999994111000                    000       034579


Q ss_pred             EEcCCCCCCCeEEEEEEEecCCc--eeeeeEEEEEeecc---------------CCeeeecCCCceeEEcCCeEEEEEEc
Q psy17058        143 IINGITKADEGVYICSIQNAQGN--VFQDYASIQVDKRE---------------MPRIRIHPNASQTFIVGDRADIQCVL  205 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~---------------~p~~~~~~~~~~~v~~g~~~~L~C~~  205 (471)
                      .|.+++.+|+|.|+|.+.+..+.  .......|.|....               .+.+. ..+....+.+|++++|.|.+
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~  160 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVT-QAQSSVSMPVRKAVTLNCLY  160 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEE-CCCCCEEEETTCCEEECCEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeE-EeCCEEEEcCCCCEEEEEEC
Confidence            99999999999999999987552  13344556665321               12333 33445678899999999988


Q ss_pred             cCCCCCCeEEEEeCCCCCCc--------------CCCceEEe----eeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        206 EAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQ----ELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       206 ~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      ....+.+.+.|+|.+.....              ..++.+..    ....|.|.+++.+|+|.|.|.+.+.
T Consensus       161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            44347889999986432111              12232221    1245999999999999999999753

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=4.7e-17  Score=148.33  Aligned_cols=175  Identities=15%  Similarity=0.252  Sum_probs=116.0

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCC-CC-------------------CCCcc-------cCcEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQE-QL-------------------PPNMI-------AGETLI  143 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~-~~-------------------~~~~~-------~~~~L~  143 (471)
                      +...|..+.+.+|++|+|.|. .+.+  .+.+.|+|++.. ..                   ..+..       ...+|+
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            445677889999999999999 5554  578999997321 10                   11111       125899


Q ss_pred             EcCCCCCCCeEEEEEEEecCC---c-eeeeeEEEEEeecc-------------CCeeeecCCCceeEEcCCeEEEEEEcc
Q psy17058        144 INGITKADEGVYICSIQNAQG---N-VFQDYASIQVDKRE-------------MPRIRIHPNASQTFIVGDRADIQCVLE  206 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~---~-~~~~~~~l~v~~~~-------------~p~~~~~~~~~~~v~~g~~~~L~C~~~  206 (471)
                      |.+++.+|+|.|+|.+.+..+   . .......|.|....             ++.+. ..+....+.+|++++|.|.+ 
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~-  186 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLT-QSPAIMSASPGEKVTITCSA-  186 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEE-EECSEEEECTTCCEEEEEEE-
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEe-cCCCEEEEcCCCcEEEEEEe-
Confidence            999999999999999998765   1 12233456665321             12222 22334568899999999999 


Q ss_pred             CCCCCCeEEEEe--CCCCCC------------cCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEE
Q psy17058        207 AGEPSPTQTWIR--PDNDGK------------FGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIH  269 (471)
Q Consensus       207 ~~~p~~~v~W~~--~~~~~~------------~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~  269 (471)
                      .+.+ +.+.|+|  ++..+.            ...++....  ....|.|.+++.+|+|.|+|.+.+.... ......|.
T Consensus       187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~  265 (282)
T 1qok_A          187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE  265 (282)
T ss_dssp             SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEE
Confidence            6667 8999999  454421            123333322  2347999999999999999999875332 22234455


Q ss_pred             EE
Q psy17058        270 VL  271 (471)
Q Consensus       270 V~  271 (471)
                      |.
T Consensus       266 V~  267 (282)
T 1qok_A          266 LK  267 (282)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.73  E-value=1.8e-17  Score=148.57  Aligned_cols=165  Identities=15%  Similarity=0.206  Sum_probs=114.0

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-----CCeEEEEeCCCCCC--------------cCCCceEEee--eceEEEeccCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-----SPTQTWIRPDNDGK--------------FGPDVEVYQE--LGVLRFNNIATGD  247 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-----~~~v~W~~~~~~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d  247 (471)
                      ....+.+|++++|.|.+ .+.+     .+.+.|+|++....              ...++.+...  ...|.|.+++.+|
T Consensus        42 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           42 LSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             SEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            45568899999999999 5665     58999999753211              1233433321  2379999999999


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-cc
Q psy17058        248 EGKYTCIAENSAGKE-VMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-LE  320 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~~-~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-~~  320 (471)
                      +|.|.|.+.+..+.. .....|.|..   +|.+.+.+... .+.+|+.++|.|.+.| .|.+ ++.|++++..+... ..
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  199 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  199 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEE
T ss_pred             CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeee
Confidence            999999998875432 2234566653   45555543321 2346899999999998 4544 79999999876533 11


Q ss_pred             ---c-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        321 ---R-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       321 ---~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                         .     ......+.|.|..+..+|+|.|+|.|.|......
T Consensus       200 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p  242 (252)
T 3bkj_L          200 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  242 (252)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             ecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence               0     0112235699999999999999999999876653

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.73  E-value=1.2e-16  Score=134.76  Aligned_cols=149  Identities=19%  Similarity=0.314  Sum_probs=104.8

Q ss_pred             CceeecCCCcEEEEee-C--CCCCCeEEEEe--CCCCCC------------CCCcc--cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         99 RQQSAPEGSQVTIECK-S--NDPSATIKWSK--DNQEQL------------PPNMI--AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~--~~p~~~v~W~~--~~~~~~------------~~~~~--~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      ..+...+|++|+|.|. .  +.+.+.|.|++  + +..+            ..+..  .+++|.|.+++.+|+|.|+|.+
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~-~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSD-KKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGG-CCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCC-CcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            4567899999999996 2  35667999999  6 4433            11211  5679999999999999999999


Q ss_pred             EecCCceee--eeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec
Q psy17058        160 QNAQGNVFQ--DYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG  236 (471)
Q Consensus       160 ~~~~~~~~~--~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  236 (471)
                      .|..+. ..  ....|.|... ..|.+.         ..+..++|.|.+ .+.|.+.+.|++++..+  .      ....
T Consensus        86 ~n~~g~-~~~~~~~~L~V~~~~~~P~i~---------~~~~~v~L~C~~-~~~p~~~~~W~~~g~~l--~------~~~~  146 (182)
T 1hnf_A           86 YDTKGK-NVLEKIFDLKIQERVSKPKIS---------WTCINTTLTCEV-MNGTDPELNLYQDGKHL--K------LSQR  146 (182)
T ss_dssp             EETTSC-EEEEEEEEEEEECCCCCCEEE---------EETTTTEEEEEC-SSCSSCEEEEEESSCEE--E------EESS
T ss_pred             EeCCCc-eeEEEEEEEEEcCcCCCCEEE---------EccCcEEEEeEc-cCCCCCEEEEEECCEEC--C------CCCc
Confidence            998776 32  2344555421 122222         134479999999 66778899999998764  1      1123


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      .|.+.. ...|.|.|+|.|.|..+..+....+
T Consensus       147 ~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          147 VITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            344433 5789999999999999887766554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.73  E-value=3.4e-17  Score=143.75  Aligned_cols=168  Identities=14%  Similarity=0.200  Sum_probs=114.0

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCCC-C---------------------CCCcc-------cCcEEEEc
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQEQ-L---------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~~-~---------------------~~~~~-------~~~~L~i~  145 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|+.... .                     ..+..       ...+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            55678999999999999 5544  6789999963211 0                     11111       13489999


Q ss_pred             CCCCCCCeEEEEEEEecCCc----eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe
Q psy17058        146 GITKADEGVYICSIQNAQGN----VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR  218 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~  218 (471)
                      +++.+|+|.|.|.+.+..+.    .......+.|..  ..+|.+...+... .+.+|+.++|.|.+....|.+ .++|++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEEccEECCCCEEEEec
Confidence            99999999999999986531    122345666653  2345555544322 356899999999995445877 999999


Q ss_pred             CCCCCCcCCCce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        219 PDNDGKFGPDVE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       219 ~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      ++..+.......     .....+.|.|.++...| |.|+|.|.|..+.......
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            987643211000     11223468999999889 9999999998877554443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.73  E-value=1.9e-17  Score=147.80  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=114.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCC----------------CCCC---cCCCceEEee---eceEEEeccCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----------------NDGK---FGPDVEVYQE---LGVLRFNNIATG  246 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~----------------~~~~---~~~~~~~~~~---~~~l~i~~~~~~  246 (471)
                      ....+.+|+.++|.|.+ .+.+.+.+.|+|..                ....   ...++.+...   ...|.|.+++.+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            9 SWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             SEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             cEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            34578899999999998 66788899999832                1100   1133333321   347999999999


Q ss_pred             CCeEEEEEEEcCCC----ceEEEEEEEEEe------CCceeeCCCccEEecCCCcEEEEEEEeecCCC--eEEEEeCCcc
Q psy17058        247 DEGKYTCIAENSAG----KEVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAP  314 (471)
Q Consensus       247 d~G~Y~C~~~~~~~----~~~~~~~l~V~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~~~~  314 (471)
                      |+|.|.|.+.+..+    .......|.|..      +|.+.+.......+.+|+.+.|.|.+.|.|++  .+.|+++|..
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  167 (246)
T 4dzb_B           88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  167 (246)
T ss_dssp             GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence            99999999987543    222345677763      45555443333345669999999999986654  8999999988


Q ss_pred             CCCcccc-------------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCceE
Q psy17058        315 FDRNLER-------------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTEE  355 (471)
Q Consensus       315 ~~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  355 (471)
                      +......             ......+.|.|.....+| .|.|+|.|.|......
T Consensus       168 l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          168 VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            7643211             111122458888888888 9999999999876554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.73  E-value=5.5e-18  Score=147.01  Aligned_cols=171  Identities=12%  Similarity=0.159  Sum_probs=113.4

Q ss_pred             CeeeecCCCcee-EEcCCeEEEEEEccCCC---C-CCeEEEEeCCCCCCcCC-------CceEEeeeceEEEeccCCCCC
Q psy17058        181 PRIRIHPNASQT-FIVGDRADIQCVLEAGE---P-SPTQTWIRPDNDGKFGP-------DVEVYQELGVLRFNNIATGDE  248 (471)
Q Consensus       181 p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~---p-~~~v~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~  248 (471)
                      |.+.+.++.... +.+|++++|.|.+. +.   | ...++|+|++..+....       ........+.|.|.+++.+|+
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   80 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEE-EECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTT
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEe-CcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCC
Confidence            344444444333 77999999999994 54   3 35999999986532210       000111235799999999999


Q ss_pred             eEEEEEEEcCCCce--EEEEEE--EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccccc
Q psy17058        249 GKYTCIAENSAGKE--VMNAYI--HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLERD  322 (471)
Q Consensus       249 G~Y~C~~~~~~~~~--~~~~~l--~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~~~  322 (471)
                      |.|+|.+.|..+..  ...+.+  .+..+|.+.+.+.... ...|+.+.|.|.+.| .|+ +.+.|+++|..+.......
T Consensus        81 G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  159 (207)
T 2vol_A           81 KEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQ  159 (207)
T ss_dssp             CCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECC
T ss_pred             CEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCC
Confidence            99999999987753  233333  4456777766543322 235999999999998 455 3899999998875321100


Q ss_pred             ---c----cCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        323 ---E----LTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       323 ---~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                         .    ....+.|.|.....+|.|.|+|.|.|....
T Consensus       160 ~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          160 PIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             ceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence               1    112234667666677899999999998654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.73  E-value=6.8e-17  Score=145.09  Aligned_cols=175  Identities=18%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC---------------cCCCceEE----eeeceEEEeccCCCCC
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---------------FGPDVEVY----QELGVLRFNNIATGDE  248 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~---------------~~~~~~~~----~~~~~l~i~~~~~~d~  248 (471)
                      +....+.+|++++|.|.+ .+.|.+.+.|+|......               ...++.+.    .....|.|.+++.+|+
T Consensus        10 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             CSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            345678899999999999 666889999998432211               11233332    1134699999999999


Q ss_pred             eEEEEEEEcCCCc----eEEEEEEEEEe--------------------CCceeeCCCccEEecCCCcEEEEEEEeecCCC
Q psy17058        249 GKYTCIAENSAGK----EVMNAYIHVLT--------------------LPAVTITPSEYVSVRPGEPLTLECEATGRPMP  304 (471)
Q Consensus       249 G~Y~C~~~~~~~~----~~~~~~l~V~~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  304 (471)
                      |.|.|.+.+..+.    ....+.|.|..                    +|.+...+ ....+.+|++++|.|.+.+. .+
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~-~~  166 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP-RNKVTVTGENVTLSCRQTNS-HN  166 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC-SEEEEETTCCEEECEEECSC-CS
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC-CEEEEeCCCcEEEEEEcCCC-ce
Confidence            9999999987542    12234566664                    34444444 34577899999999999876 67


Q ss_pred             eEEEEeCCccCCC-------------------ccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEE
Q psy17058        305 TVSWVKYIAPFDR-------------------NLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAV  362 (471)
Q Consensus       305 ~i~W~~~~~~~~~-------------------~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V  362 (471)
                      .+.|++.......                   ... ........+|.|.+++.+|+|.|+|.|.|..|...  .-..|.|
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v  246 (256)
T 3tf7_C          167 YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTV  246 (256)
T ss_dssp             EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEE
Confidence            9999984322110                   000 00123456899999999999999999999876441  2245666


Q ss_pred             ecC
Q psy17058        363 EHR  365 (471)
Q Consensus       363 ~~~  365 (471)
                      .+.
T Consensus       247 ~~~  249 (256)
T 3tf7_C          247 LEL  249 (256)
T ss_dssp             ECG
T ss_pred             Ecc
Confidence            654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.73  E-value=1.6e-16  Score=139.53  Aligned_cols=167  Identities=15%  Similarity=0.221  Sum_probs=114.8

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCC--CC-----------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDND--GK-----------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~--~~-----------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|+.++|.|.+ .+.+  ...+.|+|....  ..                 ...++.+..+    ...|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            4578899999999998 4444  468999986421  10                 1234444432    2479999999


Q ss_pred             CCCCeEEEEEEEcCCC----c--eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEe-C
Q psy17058        245 TGDEGKYTCIAENSAG----K--EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVK-Y  311 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~----~--~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~-~  311 (471)
                      .+|+|.|.|.+.+..+    .  ....+.|.|..    +|.+...+.. ..+.+|+.++|.|.+.|. |.+ .+.|++ +
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC-ENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT-TCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC-cccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            9999999999998652    1  11234677763    3444432211 135689999999999986 777 999999 8


Q ss_pred             CccCCCcc------cccccCceeEEEEeecCC--CCCeEEEEEEEcCCCceEEEE
Q psy17058        312 IAPFDRNL------ERDELTSRAVYTIASVRE--SDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       312 ~~~~~~~~------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      +..+....      ........+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             SCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            88775410      001122345688887776  889999999999999876654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.73  E-value=6e-17  Score=144.92  Aligned_cols=161  Identities=20%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC--------------CcCCCceEEee--eceEEEeccCCCCCeEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--------------KFGPDVEVYQE--LGVLRFNNIATGDEGKY  251 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y  251 (471)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+|.....              ....++.....  ...|.|.+++.+|+|.|
T Consensus        11 p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTY   89 (250)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEE
Confidence            345567899999999999 77788899999964221              11233333221  23799999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEEEEeC------------------CceeeCCCccEEecCCCcEEEEEEEeecC--CCeEEEEe
Q psy17058        252 TCIAENSAGKE-VMNAYIHVLTL------------------PAVTITPSEYVSVRPGEPLTLECEATGRP--MPTVSWVK  310 (471)
Q Consensus       252 ~C~~~~~~~~~-~~~~~l~V~~~------------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~  310 (471)
                      .|.+.|..+.. .....|.|..+                  +...+.......+.+|++++|.|.+.+.|  .+.+.|++
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k  169 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVK  169 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEE
Confidence            99998865432 23345666542                  11222222346789999999999998876  67999999


Q ss_pred             C--CccCCCc-------------------ccc--cccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        311 Y--IAPFDRN-------------------LER--DELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       311 ~--~~~~~~~-------------------~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +  +..+...                   ...  .......+|.|.+++.+|+|.|+|.|.|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          170 QRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            7  4333110                   000  0113445799999999999999999997

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.73  E-value=9.5e-18  Score=148.53  Aligned_cols=173  Identities=19%  Similarity=0.352  Sum_probs=113.7

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCC-CC-eEEEEeCCC-CCC--------------CCCcc-----cCcEEEEcCC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP-SA-TIKWSKDNQ-EQL--------------PPNMI-----AGETLIINGI  147 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~-~v~W~~~~~-~~~--------------~~~~~-----~~~~L~i~~v  147 (471)
                      .+.+.. |..+.+.+|++++|.|. .+.+ .+ .+.|+|++. ...              ..+..     ....|+|.++
T Consensus        20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   98 (234)
T 2j6e_L           20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGL   98 (234)
T ss_dssp             CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESC
T ss_pred             ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCC
Confidence            344444 77889999999999999 5433 33 799999732 111              11111     2348999999


Q ss_pred             CCCCCeEEEEEEEecCCc--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCC
Q psy17058        148 TKADEGVYICSIQNAQGN--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDND  222 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~  222 (471)
                      +.+|+|.|+|.+.+..+.  .......+.|..  ..+|.+.+.+... .+.+|+.++|.|.+....|. +.++|++++..
T Consensus        99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L           99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            999999999999988762  122233444432  1345554443322 23368899999999544555 59999999876


Q ss_pred             CCcCCC---ce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        223 GKFGPD---VE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       223 ~~~~~~---~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      +.....   ..     .....+.|.|..+..+|.|.|+|.|.|.......+
T Consensus       178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            433210   00     01113468899999999999999999987654433

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.73  E-value=7.9e-17  Score=144.68  Aligned_cols=162  Identities=20%  Similarity=0.378  Sum_probs=106.4

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCCCe
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKADEG  153 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D~G  153 (471)
                      .|..+.+.+|++++|.|. .+.  +.+.+.|+|+.....               ..+..     ...+|.|.+++.+|+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            345678999999999999 554  778999999621111               11111     2337999999999999


Q ss_pred             EEEEEEEecCCc--eeeeeEEEEEeeccCC-----------------eeeecCCCceeEEcCCeEEEEEEccCCCC--CC
Q psy17058        154 VYICSIQNAQGN--VFQDYASIQVDKREMP-----------------RIRIHPNASQTFIVGDRADIQCVLEAGEP--SP  212 (471)
Q Consensus       154 ~Y~C~~~~~~~~--~~~~~~~l~v~~~~~p-----------------~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~  212 (471)
                      .|+|.+.+..+.  .......|.|......                 .+.+.......+.+|++++|.|.+ .+.+  .+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~  166 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAA-SGFTFSSY  166 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEE-ESSCGGGS
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEE-eCCccccc
Confidence            999999986543  1223345555432110                 111222233457899999999999 5544  67


Q ss_pred             eEEEEeCCCCCCc-------------------CCCceEEee----eceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        213 TQTWIRPDNDGKF-------------------GPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       213 ~v~W~~~~~~~~~-------------------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .+.|+|++.....                   ..++.+...    ...|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9999997422111                   123333321    2359999999999999999999864

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.73  E-value=5.1e-17  Score=142.86  Aligned_cols=164  Identities=17%  Similarity=0.206  Sum_probs=113.1

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CCC-----------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DGK-----------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~~-----------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  ...+.|+|...  ...                 ...++.+..+    ...|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            9 GGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4568899999999999 5555  57899998642  110                 1234444432    3579999999


Q ss_pred             CCCCeEEEEEEEcCCC-----c---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEe
Q psy17058        245 TGDEGKYTCIAENSAG-----K---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVK  310 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~-----~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~  310 (471)
                      .+|+|.|.|.+.+..+     .   ....+.|.|..    +|.+....... .+.+|+.+.|.|.+.|. |.+ .+.|++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~  166 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNS  166 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEec
Confidence            9999999999998754     2   11345777775    34444322211 25689999999999986 776 999999


Q ss_pred             CCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        311 YIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       311 ~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ++..+.....      .......+.|.|..+..+| |.|+|.|.|..+....
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  217 (225)
T 1op3_H          167 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  217 (225)
T ss_dssp             TSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEE
T ss_pred             CCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccE
Confidence            9876431100      0111234578999998888 9999999997765543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.73  E-value=1.6e-16  Score=135.54  Aligned_cols=164  Identities=14%  Similarity=0.210  Sum_probs=110.1

Q ss_pred             cEEEcCCc--eeecCCCcEEEEeeCCCCCC--eEEEEeCCCCCCCCCc-c-cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         93 EVQVTPRQ--QSAPEGSQVTIECKSNDPSA--TIKWSKDNQEQLPPNM-I-AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        93 ~v~~~p~~--~~v~~G~~v~l~C~~~~p~~--~v~W~~~~~~~~~~~~-~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      .+.+.|..  +.+.+|++++|.|..+.|.+  .|.|++. ...+.... . ....|.|.+++.+|+|.|.|.+.+..+. 
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~-~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-   84 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGL-DTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-   84 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESS-TTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeec-ccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc-
Confidence            34444544  58999999999999666666  9999997 43342211 1 4578999999999999999999997655 


Q ss_pred             eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC----CeEEEEeCCCCCCcCCCce------------
Q psy17058        167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS----PTQTWIRPDNDGKFGPDVE------------  230 (471)
Q Consensus       167 ~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~----~~v~W~~~~~~~~~~~~~~------------  230 (471)
                      ....+.|.|.  .+|......+.  ...+|+.+ |.|.+.+..|.    ++++|+|++..+.......            
T Consensus        85 ~~~~~~ltV~--~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~  159 (210)
T 1gsm_A           85 FQHTVQLLVY--AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQG  159 (210)
T ss_dssp             EEEEEEEEEE--BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSS
T ss_pred             eEEEEEEEEE--ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccC
Confidence            4444555554  55643332222  45678888 99999554564    5899999998764321101            


Q ss_pred             ----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        231 ----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       231 ----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                          .+.-.+++.+.....++.+.|+|+|.+......
T Consensus       160 ~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          160 DEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             CCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             CcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence                111123455556666777899999998764433

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.72  E-value=3.1e-17  Score=146.41  Aligned_cols=170  Identities=16%  Similarity=0.269  Sum_probs=114.7

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC---------------CCCCC-----CCcc------cCcEEEE
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN---------------QEQLP-----PNMI------AGETLII  144 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~---------------~~~~~-----~~~~------~~~~L~i  144 (471)
                      +.+...|..+.+.+|++++|.|. .+.+.+.+.|+|..               +....     .+..      ...+|.|
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            35667788899999999999998 77788999999931               11111     1111      2347999


Q ss_pred             cCCCCCCCeEEEEEEEecCC---ceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEE
Q psy17058        145 NGITKADEGVYICSIQNAQG---NVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTW  216 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W  216 (471)
                      .+++.+|+|.|+|.+.+..+   ........+.|..    ..+|.+.+..+....+.+|+.++|.|.+....|.+ .++|
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            99999999999999986532   1123344566552    23566655544444566799999999994334433 8999


Q ss_pred             EeCCCCCCcCCCc-------------eEEeeeceEEEeccCCCC-CeEEEEEEEcCCCc
Q psy17058        217 IRPDNDGKFGPDV-------------EVYQELGVLRFNNIATGD-EGKYTCIAENSAGK  261 (471)
Q Consensus       217 ~~~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  261 (471)
                      ++++..+......             ..+...+.|.|.....+| .|.|+|.+.|....
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            9988764332110             111113458888888888 99999999987544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.72  E-value=7.5e-17  Score=141.24  Aligned_cols=163  Identities=14%  Similarity=0.217  Sum_probs=113.8

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  ...+.|+|......                   ...++.+..+    ...|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            4578899999999998 4444  57899998642100                   1234444431    3479999999


Q ss_pred             CCCCeEEEEEEEcCCCc---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CC--CeEEEEeCCcc
Q psy17058        245 TGDEGKYTCIAENSAGK---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PM--PTVSWVKYIAP  314 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~i~W~~~~~~  314 (471)
                      .+|+|.|.|.+.+..+.   ....+.|.|..    +|.+...+  ...+.+|+.++|.|.+.+. |.  +.+.|++++..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            99999999999987542   12235677764    34444433  2235789999999999986 76  69999999877


Q ss_pred             CCCc--cc----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        315 FDRN--LE----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       315 ~~~~--~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      +...  ..    .......+.|.|.....+|.|.|+|.|.|..|...
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            5211  00    01112234689999999999999999999998765

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.72  E-value=1.1e-16  Score=142.82  Aligned_cols=161  Identities=18%  Similarity=0.257  Sum_probs=108.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-----CCeEEEEeCCCCCC--------------cCCCceEEee--eceEEEeccCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-----SPTQTWIRPDNDGK--------------FGPDVEVYQE--LGVLRFNNIATGD  247 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-----~~~v~W~~~~~~~~--------------~~~~~~~~~~--~~~l~i~~~~~~d  247 (471)
                      ....+.+|+.++|.|.+ .+.+     .+.+.|+|++....              ...++.+...  ...|.|.+++.+|
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            9 LYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            45578899999999999 5666     68999999642110              1233433321  2379999999999


Q ss_pred             CeEEEEEEEcCCCc-eEEEEEEEEEeCC------------ceeeCCCccEEecCCCcEEEEEEEeecC--CCeEEEEeCC
Q psy17058        248 EGKYTCIAENSAGK-EVMNAYIHVLTLP------------AVTITPSEYVSVRPGEPLTLECEATGRP--MPTVSWVKYI  312 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~-~~~~~~l~V~~~p------------~~~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~  312 (471)
                      +|.|.|.+.|..+. ....+.|.|..++            .+.+.......+.+|++++|.|.+.+.+  .+.+.|++++
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~  167 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA  167 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence            99999999887543 2233566666542            2222222234689999999999999875  4689999964


Q ss_pred             c--cCC-------------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        313 A--PFD-------------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       313 ~--~~~-------------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .  .+.                   ......  ......+|.|.+++.+|+|.|+|.|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            2  110                   000000  1223468999999999999999999995

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.72  E-value=3.1e-18  Score=149.83  Aligned_cols=174  Identities=11%  Similarity=0.202  Sum_probs=114.2

Q ss_pred             cCCeeeecCCCcee-EEcCCeEEEEEEccCCC---CC-CeEEEEeCCCCCCcCCCc-------eEEeeeceEEEeccCCC
Q psy17058        179 EMPRIRIHPNASQT-FIVGDRADIQCVLEAGE---PS-PTQTWIRPDNDGKFGPDV-------EVYQELGVLRFNNIATG  246 (471)
Q Consensus       179 ~~p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~---p~-~~v~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~  246 (471)
                      .+|.+.+.++.... +.+|+.++|.|.+. +.   |. +.++|+|++..+......       ......+.|.|.+++.+
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEE-EECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEc-CCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            34556555544332 67899999999994 44   43 799999998653321100       01112457999999999


Q ss_pred             CCeEEEEEEEcCCCce--EEEEEE--EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc
Q psy17058        247 DEGKYTCIAENSAGKE--VMNAYI--HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE  320 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~~--~~~~~l--~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~  320 (471)
                      |+|.|+|.+.|..+..  ...+.+  .+..+|.+.+.+.... ..+|+.+.|.|.+.| +|.+ .+.|+++|..+.....
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~  165 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD  165 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE
T ss_pred             CCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee
Confidence            9999999999986643  333322  4456677665543322 235999999999998 6765 9999999987643211


Q ss_pred             cc---c----cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        321 RD---E----LTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       321 ~~---~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..   .    ....+.|.|.....+|.|.|+|.|.|.....
T Consensus       166 ~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          166 TAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             cccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            00   0    1122345565555667999999999987653

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.72  E-value=1.2e-16  Score=139.91  Aligned_cols=164  Identities=15%  Similarity=0.226  Sum_probs=111.6

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCCC--------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQEQ--------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~~--------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|.....                    ...+..       ....|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            45688999999999999 5544  5789999863111                    111111       1248999999


Q ss_pred             CCCCCeEEEEEEEecCCc--eeeeeEEEEEeec--cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCC
Q psy17058        148 TKADEGVYICSIQNAQGN--VFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDN  221 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~~--~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~  221 (471)
                      +.+|+|.|.|.+.+..+.  .......|.|...  .+|.+...+  ...+.+|+.++|.|.+....|.  +.+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence            999999999999986542  1223456666532  345555544  2235689999999999544476  7999999987


Q ss_pred             CCCcC-CCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        222 DGKFG-PDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       222 ~~~~~-~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      .+... ...     ..+...+.|.|......|.|.|+|.+.|..+...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            64211 000     0111134588988888999999999999877644

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.72  E-value=4.4e-17  Score=143.60  Aligned_cols=168  Identities=17%  Similarity=0.257  Sum_probs=113.1

Q ss_pred             ceeEEcCCeEEEEEEccCCCCC----CeEEEEeCC--CCCC----------------cCCCceEEee----eceEEEecc
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPS----PTQTWIRPD--NDGK----------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~----~~v~W~~~~--~~~~----------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ...+.+|+.++|.|.+ .+.+.    +.+.|+|..  ....                ...++.+..+    ...|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             ceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4468899999999999 55553    789999864  2210                1223333321    357999999


Q ss_pred             CCCCCeEEEEEEEcCCC------c---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEE
Q psy17058        244 ATGDEGKYTCIAENSAG------K---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSW  308 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~------~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W  308 (471)
                      +.+|+|.|.|.+.+..+      .   ....+.|.|..    +|.+...+.. ..+.+|+.+.|.|.+.|. |.+ .+.|
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            99999999999998654      1   11235677763    4555443322 245789999999999985 877 9999


Q ss_pred             EeCCccCCCccc--c---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        309 VKYIAPFDRNLE--R---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       309 ~~~~~~~~~~~~--~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ++++..+.....  .   ......+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            998876421100  0   111234678898888866 99999999999887655443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.71  E-value=3.7e-17  Score=145.37  Aligned_cols=169  Identities=14%  Similarity=0.274  Sum_probs=113.8

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGI  147 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v  147 (471)
                      +.+...|..+.+.+|++++|.|....+.+.+.|+|.....                  ...+..      ...+|.|.++
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             cccccCcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            4566678888999999999999943477899999931111                  011111      3458999999


Q ss_pred             CCCCCeEEEEEEEe--cCCceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCC
Q psy17058        148 TKADEGVYICSIQN--AQGNVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPD  220 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~--~~~~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~  220 (471)
                      +.+|+|.|+|.+.+  ...........+.|..    ..+|.+.+..+....+.+|+.++|.|.+....|.+ .+.|++++
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            99999999999973  2222233345566652    24566665544444556799999999995446655 89999998


Q ss_pred             CCCCcCCCc----e-----EEeeeceEEEeccCCCC-CeEEEEEEEcCCC
Q psy17058        221 NDGKFGPDV----E-----VYQELGVLRFNNIATGD-EGKYTCIAENSAG  260 (471)
Q Consensus       221 ~~~~~~~~~----~-----~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  260 (471)
                      ..+......    .     .+...+.|.|.....+| .|.|+|.+.|...
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            764332111    0     11112348888888888 7799999998653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=143.42  Aligned_cols=168  Identities=20%  Similarity=0.366  Sum_probs=111.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCC-----CCeEEEEeCCC-CCC--------------CCCcc-----cCcEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDP-----SATIKWSKDNQ-EQL--------------PPNMI-----AGETLI  143 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-----~~~v~W~~~~~-~~~--------------~~~~~-----~~~~L~  143 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+     .+.+.|++++. ...              ..+..     ...+|+
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            4567777888899999999999999 6555     57899998632 111              11211     234899


Q ss_pred             EcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc-------CCe-------------eeecCCCceeEEcCCeEEEEE
Q psy17058        144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-------MPR-------------IRIHPNASQTFIVGDRADIQC  203 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~p~-------------~~~~~~~~~~v~~g~~~~L~C  203 (471)
                      |.+++.+|+|.|+|.+.+..+........|.|....       +|.             +.+..+....+.+|++++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            999999999999999988654322233455554321       110             122222345788999999999


Q ss_pred             EccCCCC--CCeEEEEeCCCC--C-------------------CcCCCceEEee----eceEEEeccCCCCCeEEEEEEE
Q psy17058        204 VLEAGEP--SPTQTWIRPDND--G-------------------KFGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       204 ~~~~~~p--~~~v~W~~~~~~--~-------------------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      .+ .+.+  .+.+.|+|+...  .                   ....++.+..+    ...|.|.+++.+|+|.|+|.+.
T Consensus       174 ~~-~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  252 (268)
T 1x9q_A          174 VT-SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGA  252 (268)
T ss_dssp             EE-ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             Ee-cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEc
Confidence            99 4444  378999986321  1                   11234444332    2479999999999999999998


Q ss_pred             cC
Q psy17058        257 NS  258 (471)
Q Consensus       257 ~~  258 (471)
                      +.
T Consensus       253 ~~  254 (268)
T 1x9q_A          253 SY  254 (268)
T ss_dssp             ET
T ss_pred             cC
Confidence            64

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.71  E-value=5.2e-18  Score=150.14  Aligned_cols=163  Identities=15%  Similarity=0.262  Sum_probs=93.3

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--------------cCCCceEE--eeeceEEEeccCCCCCeEEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--------------FGPDVEVY--QELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~  252 (471)
                      ....+.+|++++|.|.+ .+.|.+.+.|+|++....              ...++...  .....|.|.+++.+|+|.|.
T Consensus        31 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  109 (233)
T 3bqu_C           31 ASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY  109 (233)
T ss_dssp             SBC-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred             CeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence            34568899999999998 566667899998653211              12233222  22337999999999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEEe---CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCCCc-cc---c-
Q psy17058        253 CIAENSAGKE-VMNAYIHVLT---LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFDRN-LE---R-  321 (471)
Q Consensus       253 C~~~~~~~~~-~~~~~l~V~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~-~~---~-  321 (471)
                      |.+.+..+.. .....|.|..   +|.+.+.+... .+.+|+.++|.|.+.|. |.+ .+.|++++..+... ..   . 
T Consensus       110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  188 (233)
T 3bqu_C          110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  188 (233)
T ss_dssp             EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCC
T ss_pred             EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCc
Confidence            9998865432 2223455554   45555543321 23469999999999985 443 79999999877543 11   0 


Q ss_pred             ----cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        322 ----DELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       322 ----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                          ......+.|.|.....+|+|.|+|.|.|....
T Consensus       189 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          189 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence                01123457899999999999999999997654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=5.8e-17  Score=140.91  Aligned_cols=164  Identities=14%  Similarity=0.236  Sum_probs=111.5

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CC------------------CCCCcc-------cCcEEEEcCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQ------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      +|..+.+.+|++++|.|. .+.+  .+.+.|+|++. ..                  ...+..       ...+|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            366778999999999999 5544  47899998631 11                  111211       1238999999


Q ss_pred             CCCCCeEEEEEEEecCCceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCC
Q psy17058        148 TKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGK  224 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~  224 (471)
                      +.+|+|.|+|.+.+.. . ......+.|..  ..+|.+...+.. ..+.+|+.++|.|.+....|.+ .++|++++..+.
T Consensus        86 ~~~D~G~Y~C~~~~~~-~-~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~  162 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-Y-WGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  162 (210)
T ss_dssp             CGGGCEEEEEEETTSS-C-BCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CcccCEEEEEEEecCc-c-cccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence            9999999999998753 1 22334566652  234555544432 2456899999999995444877 999999887532


Q ss_pred             cCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        225 FGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       225 ~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      .....     ......+.|.|..+..+| |.|+|.|.|..+....
T Consensus       163 ~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          163 VHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             EEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             eEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            21111     111224568999988877 9999999998776543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.71  E-value=4.7e-17  Score=147.26  Aligned_cols=171  Identities=16%  Similarity=0.272  Sum_probs=114.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCC-CCCC-----------------C-CCcc------cCcEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDN-QEQL-----------------P-PNMI------AGETLII  144 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~-~~~~-----------------~-~~~~------~~~~L~i  144 (471)
                      ..+.+...|..+.+.+|++++|.|....+.+.+.|+|.. +...                 . .+..      ...+|+|
T Consensus        25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           25 GGAGVSQTPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             --SSCBCCCSEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             cCceeEeCCCEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            345666777888999999999999944677899999931 1110                 0 1111      2568999


Q ss_pred             cCCCCCCCeEEEEEEEecC-CceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe
Q psy17058        145 NGITKADEGVYICSIQNAQ-GNVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR  218 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~  218 (471)
                      .+++.+|+|.|+|.+.+.. .........+.|..    ..+|.+.+.......+.+|+.++|.|.+....|.+ .++|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            9999999999999999742 11133344566652    12566555544444566799999999994434544 899999


Q ss_pred             CCCCCCcCCC-------------ceEEeeeceEEEeccCCCC-CeEEEEEEEcCCC
Q psy17058        219 PDNDGKFGPD-------------VEVYQELGVLRFNNIATGD-EGKYTCIAENSAG  260 (471)
Q Consensus       219 ~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  260 (471)
                      +|..+.....             .......+.|.|.....+| +|.|+|.+.|...
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9876532210             0111223457888887777 9999999998753

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.71  E-value=2.2e-16  Score=133.28  Aligned_cols=148  Identities=16%  Similarity=0.223  Sum_probs=102.3

Q ss_pred             CceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCC------------C-C---CCc---ccCcEEEEcCCCCCCCeEEEE
Q psy17058         99 RQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQ------------L-P---PNM---IAGETLIINGITKADEGVYIC  157 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~------------~-~---~~~---~~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      ..+.+.+|++|+|.|. .. .+.+.+.|+|.++..            . .   .+.   ..+++|+|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4578999999999999 33 346799999952211            1 0   111   145789999999999999999


Q ss_pred             EEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec
Q psy17058        158 SIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG  236 (471)
Q Consensus       158 ~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  236 (471)
                      .+.+.. . ......|.|.... .|.+         ...++.++|.|.+..+ |.+.+.|++++..+.       .....
T Consensus        87 ~v~~~~-~-~~~~~~L~V~~~~~~P~i---------~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-------~~~~~  147 (180)
T 2dru_A           87 RMLHET-E-DQWKITMEVYEMVSKPMI---------YWECSNATLTCEVLEG-TDVELKLYQGKEHLR-------SLRQK  147 (180)
T ss_dssp             EEESSS-E-EEEEEEEEEECCCCCCEE---------EEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-------EESSS
T ss_pred             EEEcCC-e-EEEEEEEEEECCCCCCEE---------EecCCCEEEEEEeCCC-CCCEEEEEECCeECc-------CCCCC
Confidence            998765 3 4445556654321 1222         1245679999999555 889999999987643       11234


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +|.+..  .+|+|.|+|.|.|..+.......
T Consensus       148 ~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          148 TMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            565533  78999999999999877655443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.71  E-value=4.9e-17  Score=145.02  Aligned_cols=169  Identities=17%  Similarity=0.209  Sum_probs=114.7

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCC-------------CC-----CCC-CCcc------cCcEEEEcC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDN-------------QE-----QLP-PNMI------AGETLIING  146 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~-------------~~-----~~~-~~~~------~~~~L~i~~  146 (471)
                      +.+...|..+.+.+|++++|.|..+.+.+.+.|+|..             +.     .+. .+..      ...+|.|.+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred             cceEeCCceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence            4567778889999999999999866778899999921             10     011 1111      245899999


Q ss_pred             CCCCCCeEEEEEEEecC---CceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe
Q psy17058        147 ITKADEGVYICSIQNAQ---GNVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR  218 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~---~~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~  218 (471)
                      ++.+|+|.|.|.+.+..   .........+.|..    ..+|.+.+..+....+.+|+.++|.|.+....|.+ .+.|++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~  162 (245)
T 4ei6_B           83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (245)
T ss_dssp             CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEE
Confidence            99999999999998532   11133445566652    13565655544444556799999999994445554 899999


Q ss_pred             CCCCCCcCCC-------------ceEEeeeceEEEeccCCCC-CeEEEEEEEcCCC
Q psy17058        219 PDNDGKFGPD-------------VEVYQELGVLRFNNIATGD-EGKYTCIAENSAG  260 (471)
Q Consensus       219 ~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  260 (471)
                      +|..+.....             ...+...+.|.|......| .|.|+|.+.|...
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            8876433211             0111113458888888888 9999999998653

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.71  E-value=4.1e-18  Score=149.11  Aligned_cols=171  Identities=13%  Similarity=0.177  Sum_probs=112.5

Q ss_pred             cCCCCcEEEcCCcee--ecCCCcEEEEee-CCC---C-CCeEEEEeCCCCCCCCCc------------ccCcEEEEcCCC
Q psy17058         88 SPQANEVQVTPRQQS--APEGSQVTIECK-SND---P-SATIKWSKDNQEQLPPNM------------IAGETLIINGIT  148 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~--v~~G~~v~l~C~-~~~---p-~~~v~W~~~~~~~~~~~~------------~~~~~L~i~~v~  148 (471)
                      ...+|.+.+.|....  +.+|++++|.|. .+.   | .+.|.|+|++ ..+....            .....|.|.+++
T Consensus         6 ~~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   84 (218)
T 2rgs_A            6 LEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQTHREDYNSTIRVVSTLPIQHQD   84 (218)
T ss_dssp             ---CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETT-EEECCCEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred             CCCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECC-ccccCcccccccccCCCeEEEEEEEEEcHHH
Confidence            346778888777666  899999999999 544   3 3789999994 4333211            123479999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEE--EeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCc
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQ--VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKF  225 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~--v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~  225 (471)
                      .+|+|.|+|.+.|..+. ......+.  +.+..+|.+.+.+..... .+|+.++|.|.+....|.+ .++|++++..+..
T Consensus        85 ~~D~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  162 (218)
T 2rgs_A           85 WMSGKEFKCKVNNKDLP-SPIERTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN  162 (218)
T ss_dssp             HHTTCCEEEEEEETTCS-SCEEEEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             cCCCCeEEEEEECCcCC-CcceEEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEECCEeccC
Confidence            99999999999998664 21222332  244566777666544322 3599999999994436665 9999999876422


Q ss_pred             CCCceE-Eeee------ceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        226 GPDVEV-YQEL------GVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       226 ~~~~~~-~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ...... ...+      +.|.|.....+|.|.|+|.+.|....
T Consensus       163 ~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          163 YKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            111111 1112      23555555555799999999997654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.70  E-value=5.5e-16  Score=136.02  Aligned_cols=168  Identities=13%  Similarity=0.236  Sum_probs=111.4

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++|+|.|. .+.+  .+.+.|+|... ..                   ...+..       ...+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            45788999999999999 5544  47899998631 11                   011111       1348999999


Q ss_pred             CCCCCeEEEEEEEecCC---c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe-
Q psy17058        148 TKADEGVYICSIQNAQG---N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR-  218 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~---~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~-  218 (471)
                      +.+|+|.|.|.+.+..+   .  .......|.|..  ..+|.+....+.. .+.+|+.++|.|.+....|.+ .++|++ 
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            99999999999988652   1  122334566652  2345555432222 356899999999995445776 999999 


Q ss_pred             CCCCCCcC---CC---ceEEeeeceEEEeccCC--CCCeEEEEEEEcCCCceEEEE
Q psy17058        219 PDNDGKFG---PD---VEVYQELGVLRFNNIAT--GDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       219 ~~~~~~~~---~~---~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      ++..+...   ..   ...+...+.|.|.....  +|.|.|+|.+.|..+.....+
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            77664320   00   01122245688887776  789999999999887765443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.70  E-value=1.6e-16  Score=139.12  Aligned_cols=169  Identities=15%  Similarity=0.271  Sum_probs=114.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCCC----C------------------CCCcc-------cCcEEEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQEQ----L------------------PPNMI-------AGETLII  144 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~~----~------------------~~~~~-------~~~~L~i  144 (471)
                      +|..+.+.+|++++|.|. .+.+  .+.+.|+|++...    +                  ..+..       ....|+|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            356788999999999999 5554  6899999963111    0                  11111       1238999


Q ss_pred             cCCCCCCCeEEEEEEEecCCce--eeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeC
Q psy17058        145 NGITKADEGVYICSIQNAQGNV--FQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRP  219 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~  219 (471)
                      .+++.+|+|.|+|.+.+..+..  ......+.|..  ..+|.+...++.. .+.+|+.++|.|.+....|.+ .++|+++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGC-SDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCS-CCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccccc-ccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            9999999999999999865321  12345666653  2345555444322 356899999999995444887 9999998


Q ss_pred             CCCCC---cCCCc--eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        220 DNDGK---FGPDV--EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       220 ~~~~~---~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +....   .....  ......+.|.|..+..+| |.|+|.|.|..+.....+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            87411   11000  122235678999888866 9999999998887655443

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.70  E-value=1.8e-17  Score=146.23  Aligned_cols=174  Identities=13%  Similarity=0.196  Sum_probs=114.4

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCCCC-CcCCCce------EEeeeceEEEeccCCCCCeE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDNDG-KFGPDVE------VYQELGVLRFNNIATGDEGK  250 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~-~~~~~~~------~~~~~~~l~i~~~~~~d~G~  250 (471)
                      +|.+.+..+....+.+|+.++|.|.+....|.  ..++|++++..+ .......      .+.....|.|.++..+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            34554444444456789999999999444563  499999998875 2211111      01123469999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEE----EeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccc----
Q psy17058        251 YTCIAENSAGKEVMNAYIHV----LTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLE----  320 (471)
Q Consensus       251 Y~C~~~~~~~~~~~~~~l~V----~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~----  320 (471)
                      |+|.+.|..+.......+.+    ..+|.+.+.+.....+ .+..+.|.|.+.|. |+ +.|.|+++|..+.....    
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  170 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTA  170 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECC
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCc
Confidence            99999997755333333322    1355555443221122 25579999999995 43 69999999988754321    


Q ss_pred             --c------------cccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        321 --R------------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       321 --~------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                        .            ......+.|.|.....+|.|.|+|.|.|.....
T Consensus       171 ~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          171 VLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             CEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             cccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence              0            011123568888888889999999999987654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=144.72  Aligned_cols=165  Identities=14%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCC--CCCC---------------cC-CCceEEee---eceEEEeccCCC
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD--NDGK---------------FG-PDVEVYQE---LGVLRFNNIATG  246 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~--~~~~---------------~~-~~~~~~~~---~~~l~i~~~~~~  246 (471)
                      +....+.+|++++|.|.+ . .+...+.|+|..  ....               .. .++.+...   ...|.|.+++.+
T Consensus        33 p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (268)
T 3pl6_D           33 PSNKVTEKGKYVELRCDP-I-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG  110 (268)
T ss_dssp             CSEEEEETTCCEEEEEBC-B-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred             CCEEEecCCCCEEEEEEe-C-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence            345678899999999998 3 577899999932  2110               01 34443321   457999999999


Q ss_pred             CCeEEEEEEEcC--CCceEEEEEEEEEe------CCceeeCCCccEEecCCCcEEEEEEEeecCCC--eEEEEeCCccCC
Q psy17058        247 DEGKYTCIAENS--AGKEVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFD  316 (471)
Q Consensus       247 d~G~Y~C~~~~~--~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~~~~~~  316 (471)
                      |+|.|.|.+.+.  .........|.|..      +|.+.+.......+.+|+.++|.|.+.|.+++  .+.|+++|..+.
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            999999999974  22333445677765      45555443333345569999999999985554  899999998875


Q ss_pred             Ccccc-------------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCce
Q psy17058        317 RNLER-------------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTE  354 (471)
Q Consensus       317 ~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  354 (471)
                      .....             ......+.|.|.....+| .|.|+|.|.|.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          191 SGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             TTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            43111             112223567888887777 999999999986554

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.70  E-value=2.1e-16  Score=141.92  Aligned_cols=168  Identities=17%  Similarity=0.216  Sum_probs=113.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CCC-----------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DGK-----------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~~-----------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  ...+.|+|+..  .+.                 ...++.+..+    ...|.|.+++
T Consensus        15 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   93 (261)
T 2xqy_G           15 AELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT   93 (261)
T ss_dssp             EEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence            4567899999999999 5554  57899998742  111                 1234444332    3479999999


Q ss_pred             CCCCeEEEEEEEcCCCc---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccC
Q psy17058        245 TGDEGKYTCIAENSAGK---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPF  315 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~  315 (471)
                      .+|+|.|.|.+.+..+.   ....+.|.|..    +|.+.+.+.. ..+.+|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            99999999999986431   11235677764    3444443222 235679999999999984 776 99999998765


Q ss_pred             CCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        316 DRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       316 ~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      .....     .......+.|.|.....+| |.|+|.|.|..........+
T Consensus       173 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~  221 (261)
T 2xqy_G          173 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  221 (261)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence            32100     0112234678998888888 99999999977665444433

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.70  E-value=6.8e-16  Score=141.26  Aligned_cols=163  Identities=17%  Similarity=0.263  Sum_probs=108.1

Q ss_pred             EcCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCC-CC-------------------CCCcc-------cCcEEEEc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQE-QL-------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~-~~-------------------~~~~~-------~~~~L~i~  145 (471)
                      ..|..+.+.+|++++|.|. .+.+  .+.+.|+|+... ..                   ..+..       ...+|+|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  106 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS  106 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence            3466889999999999999 6555  578999996321 11                   11111       13479999


Q ss_pred             CCCCCCCeEEEEEEEecC-C--c-eeeeeEEEEEeec------------c-CCeeeecCCCceeEEcCCeEEEEEEccCC
Q psy17058        146 GITKADEGVYICSIQNAQ-G--N-VFQDYASIQVDKR------------E-MPRIRIHPNASQTFIVGDRADIQCVLEAG  208 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~-~--~-~~~~~~~l~v~~~------------~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~  208 (471)
                      +++.+|+|.|.|.+.+.. +  . .......|.|...            . .+......+....+.+|++++|.|.+ .+
T Consensus       107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~  185 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS-SQ  185 (291)
T ss_dssp             SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE-SS
T ss_pred             cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc-CC
Confidence            999999999999999864 1  1 1112345555531            0 11222223345568899999999999 55


Q ss_pred             CCCC------eEEEEeCC--CCCCc------------CCCceEEee--eceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        209 EPSP------TQTWIRPD--NDGKF------------GPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       209 ~p~~------~v~W~~~~--~~~~~------------~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .+.+      .+.|+|+.  .....            ..++.....  ...|.|.+++.+|+|.|+|.+.|..
T Consensus       186 ~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          186 SLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            5554      89999974  22110            223333221  2479999999999999999998853

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.70  E-value=1.3e-16  Score=140.34  Aligned_cols=164  Identities=16%  Similarity=0.264  Sum_probs=109.8

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|+. +...                   ..+..       ....|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            55678999999999999 6555  6789999863 1111                   11111       1358999999


Q ss_pred             CCCCCeEEEEEEEecCC-----c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEE
Q psy17058        148 TKADEGVYICSIQNAQG-----N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWI  217 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~  217 (471)
                      +.+|+|.|.|.+.+..+     .  .......|.|..  ..+|.+....+.. .+.+|+.++|.|.+....|.+ .++|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            99999999999998754     1  122345666653  2245554433322 346899999999995444765 99999


Q ss_pred             eCCCCCCcCCCc------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        218 RPDNDGKFGPDV------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       218 ~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      +++..+......      ..+...+.|.|..+..+| |.|+|.|.|..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            988753211000      011123468999998888 999999999765433

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.69  E-value=5.3e-16  Score=139.84  Aligned_cols=161  Identities=17%  Similarity=0.243  Sum_probs=110.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCC------CCeEEEEeCC--CCCC------------cCCCceEEee--eceEEEeccCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP------SPTQTWIRPD--NDGK------------FGPDVEVYQE--LGVLRFNNIATG  246 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p------~~~v~W~~~~--~~~~------------~~~~~~~~~~--~~~l~i~~~~~~  246 (471)
                      ....+.+|++++|.|.+ .+.+      .+.+.|+|..  ....            ...++.+...  ...|.|.+++.+
T Consensus        13 ~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           13 SSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             SEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            45578899999999998 5555      5789999963  2211            1234444321  347999999999


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEEEeCC------------------ceeeCCCccEEecCCCcEEEEEEEeecCC--Ce
Q psy17058        247 DEGKYTCIAENSAGK-EVMNAYIHVLTLP------------------AVTITPSEYVSVRPGEPLTLECEATGRPM--PT  305 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p------------------~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~  305 (471)
                      |+|.|.|.+.+..+. ....+.|.|..+|                  .+.+.......+.+|++++|.|.+.+.+.  +.
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  171 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYF  171 (264)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeE
Confidence            999999999886542 2233567777653                  22222222347899999999999998764  79


Q ss_pred             EEEEeCC--ccCCC-----------------ccc--c--cccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        306 VSWVKYI--APFDR-----------------NLE--R--DELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       306 i~W~~~~--~~~~~-----------------~~~--~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +.|+++.  ..+..                 ..+  .  .......+|.|.+++.+|+|.|+|.|.|.
T Consensus       172 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          172 INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9999974  22110                 000  0  01224578999999999999999999995

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.69  E-value=6.3e-16  Score=135.47  Aligned_cols=162  Identities=16%  Similarity=0.327  Sum_probs=110.5

Q ss_pred             ceeEEcCCeEEEEEEccCCC--CCCeEEEEeCCCCCC---------------------cCCCceEEee----eceEEEec
Q psy17058        190 SQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGK---------------------FGPDVEVYQE----LGVLRFNN  242 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~---------------------~~~~~~~~~~----~~~l~i~~  242 (471)
                      ...+.+|+.++|.|.+ .+.  +...+.|+|......                     ...++.+..+    ...|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAA-SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CEEEcCCCCEEEEEEc-ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            4567899999999998 443  357899998542211                     1234444332    22699999


Q ss_pred             cCCCCCeEEEEEEEcCC--CceEEEEEEEEE----eCCcee-eCCCccEEecCCCcEEEEEEEee-cCC-C-eEEEEeCC
Q psy17058        243 IATGDEGKYTCIAENSA--GKEVMNAYIHVL----TLPAVT-ITPSEYVSVRPGEPLTLECEATG-RPM-P-TVSWVKYI  312 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~--~~~~~~~~l~V~----~~p~~~-~~~~~~~~~~~g~~v~l~C~~~g-~p~-~-~i~W~~~~  312 (471)
                      ++.+|+|.|.|.+.+..  ........|.|.    .+|.+. ..+..  . .+|+.++|.|.+.+ .|. + .+.|++++
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~--~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g  164 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS--T-QPDGNVVIACLVQGFFPQEPLSVTWSESG  164 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS--C-CCTTEEEEEEEEEEEBSSCSEEEEESCCS
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc--c-ccCCCEEEEEEEEeeECCCCEEEEEEECC
Confidence            99999999999999863  222333456665    234443 22222  2 68999999999998 776 4 89999999


Q ss_pred             ccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        313 APFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       313 ~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      ..+....       ........+.|.|.....+|.|.|+|.|.|..+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          165 QGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             TTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            8773211       011122345699999999999999999999887653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=141.46  Aligned_cols=175  Identities=20%  Similarity=0.198  Sum_probs=110.7

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-------------------CCCceE----EeeeceEEEeccCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-------------------GPDVEV----YQELGVLRFNNIAT  245 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~----~~~~~~l~i~~~~~  245 (471)
                      ....+.+|++++|.|.+ .+.+.+.+.|+|.......                   ..+...    ......|.|.+++.
T Consensus        10 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   88 (259)
T 3omz_A           10 KSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE   88 (259)
T ss_dssp             -CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred             ceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence            45678899999999999 6677889999984221000                   001111    11234699999999


Q ss_pred             CCCeEEEEEEEcCCC---ceEEEEEEEEEeC-----------------CceeeCCCccEEecCCCcEEEEEEEeec-CCC
Q psy17058        246 GDEGKYTCIAENSAG---KEVMNAYIHVLTL-----------------PAVTITPSEYVSVRPGEPLTLECEATGR-PMP  304 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~---~~~~~~~l~V~~~-----------------p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~  304 (471)
                      +|+|.|.|.+.+..+   .......|.|...                 +.+... .....+.+|++++|.|.+.+. |.+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~  167 (259)
T 3omz_A           89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQA-QSSVSMPVRKAVTLNCLYETSWWSY  167 (259)
T ss_dssp             GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECC-CCCEEEETTCCEEECCEEECCCSSC
T ss_pred             ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEe-CCEEEEcCCCCEEEEEECCCccCCc
Confidence            999999999998765   2333456777653                 233333 345788999999999998874 778


Q ss_pred             eEEEEeCCccCC----------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEcCCCc-----eEEEEEEE
Q psy17058        305 TVSWVKYIAPFD----------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKNSAGT-----EEKVITVA  361 (471)
Q Consensus       305 ~i~W~~~~~~~~----------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~  361 (471)
                      .+.|++......                ......  .......|+|.+++.+|+|.|+|.|.+..+.     ...-..|.
T Consensus       168 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~  247 (259)
T 3omz_A          168 YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVT  247 (259)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECCCEEEE
T ss_pred             eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEECCCCEEE
Confidence            999998542111                000000  1233467999999999999999999864221     12224666


Q ss_pred             EecC
Q psy17058        362 VEHR  365 (471)
Q Consensus       362 V~~~  365 (471)
                      |...
T Consensus       248 v~~~  251 (259)
T 3omz_A          248 VEPR  251 (259)
T ss_dssp             EEC-
T ss_pred             EeeC
Confidence            6654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=2.4e-16  Score=140.15  Aligned_cols=176  Identities=17%  Similarity=0.278  Sum_probs=113.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETL  142 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L  142 (471)
                      .+...|..+.+.+|++++|.|. .+.  +...+.|+|+.. ...                   ..+..       ...+|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            4556677889999999999999 443  567899999631 111                   11111       23579


Q ss_pred             EEcCCCCCCCeEEEEEEEecCC-----c-eeeeeEEEEEeecc-----CCeeeecCCCceeEEcCCeEEEEEEccCCCCC
Q psy17058        143 IINGITKADEGVYICSIQNAQG-----N-VFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQCVLEAGEPS  211 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~~~~-----~-~~~~~~~l~v~~~~-----~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~  211 (471)
                      .|.+++.+|+|.|.|.+.+...     . .......|.|....     +|...+..+....+.+|+.++|.|.+....|.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999987631     1 12223456665321     23333332333345579999999999544565


Q ss_pred             -CeEEEEeCCC-CCCcCC--Cce----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        212 -PTQTWIRPDN-DGKFGP--DVE----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       212 -~~v~W~~~~~-~~~~~~--~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                       +.++|++++. .+....  ...    .+...+.|.|..... + |.|+|.+.|..+.......+.+
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence             7999999987 432211  010    111134688887765 4 9999999998876544444433

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.69  E-value=2.4e-17  Score=142.92  Aligned_cols=167  Identities=12%  Similarity=0.199  Sum_probs=110.3

Q ss_pred             CcEEEcC-Ccee-ecCCCcEEEEee-CCC---C-CCeEEEEeCCCCCCCCCc-------c-----cCcEEEEcCCCCCCC
Q psy17058         92 NEVQVTP-RQQS-APEGSQVTIECK-SND---P-SATIKWSKDNQEQLPPNM-------I-----AGETLIINGITKADE  152 (471)
Q Consensus        92 ~~v~~~p-~~~~-v~~G~~v~l~C~-~~~---p-~~~v~W~~~~~~~~~~~~-------~-----~~~~L~i~~v~~~D~  152 (471)
                      |.+.+.| .... +.+|++++|.|. .+.   | ...+.|+|++ ..+....       .     ....|.|.+++.+|+
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   80 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETT-EEECCCEEECCCEETTTEEEEEEEEECCHHHHHTT
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECC-ccccccccCCCcCcCCCcEEEEEEEEEehhHcCCC
Confidence            4455544 4344 899999999999 544   2 3589999995 3332110       0     234799999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEE--eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCc
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDV  229 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v--~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~  229 (471)
                      |.|+|.+.|..+. ......+.+  .+..+|.+.+.+.... ..+|+.++|.|.+....|. +.++|++++..+......
T Consensus        81 G~Y~C~a~~~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  158 (207)
T 2vol_A           81 KEFKCRVNSAAFP-APIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNT  158 (207)
T ss_dssp             CCEEEEEECTTCS-SCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEEC
T ss_pred             CEEEEEEEccCCC-CceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccC
Confidence            9999999998765 222234433  4456777766654432 2359999999999544565 599999998764322111


Q ss_pred             e-EEee------eceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        230 E-VYQE------LGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       230 ~-~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      . ....      .+.|.|.....+|.|.|+|.+.|....
T Consensus       159 ~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          159 QPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            1 1111      224566666667899999999997643

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.69  E-value=6e-16  Score=136.60  Aligned_cols=173  Identities=15%  Similarity=0.238  Sum_probs=112.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CCC----------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DGK----------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~~----------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|+.++|.|.+ .+.+  ...+.|||...  ...                ...++.+..+    ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEE-ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            3467899999999998 4443  57899998642  111                1234444331    23799999999


Q ss_pred             CCCeEEEEEEEc--CCC----ceEEEEEEEEEe----CCceeeCCCccEEecCC-CcEEEEEEEeec-CCC-eEEEEe-C
Q psy17058        246 GDEGKYTCIAEN--SAG----KEVMNAYIHVLT----LPAVTITPSEYVSVRPG-EPLTLECEATGR-PMP-TVSWVK-Y  311 (471)
Q Consensus       246 ~d~G~Y~C~~~~--~~~----~~~~~~~l~V~~----~p~~~~~~~~~~~~~~g-~~v~l~C~~~g~-p~~-~i~W~~-~  311 (471)
                      +|+|.|.|.+.+  ..+    .....+.|.|..    +|.+..... ...+..| +.++|.|.+.|. |.+ .+.|++ +
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p-~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVS-CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEEC-C------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecc-ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence            999999999983  211    122335677764    244433211 1234578 999999999985 776 999999 8


Q ss_pred             CccCCCcc------cccccCceeEEEEeecCC--CCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        312 IAPFDRNL------ERDELTSRAVYTIASVRE--SDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       312 ~~~~~~~~------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      |..+....      ........+.|.|.....  +|.|.|+|.|.|..+.......+.+..
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             SCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             CCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            87764310      001122345788888877  789999999999999887777666554

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.69  E-value=5e-16  Score=141.29  Aligned_cols=164  Identities=16%  Similarity=0.288  Sum_probs=108.0

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC--------------------CCcc-------cCcEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP--------------------PNMI-------AGETL  142 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~--------------------~~~~-------~~~~L  142 (471)
                      .+.. |..+.+.+|++|+|.|. .+.  +.+.+.|++.......                    .+..       ...+|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM   81 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3444 77889999999999999 443  5678999985211110                    0111       12479


Q ss_pred             EEcCCCCCCCeEEEEEEEec--------CCceeeeeEEEEEee-------------ccCCeeeecCCCceeEEcCCeEEE
Q psy17058        143 IINGITKADEGVYICSIQNA--------QGNVFQDYASIQVDK-------------REMPRIRIHPNASQTFIVGDRADI  201 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~~--------~~~~~~~~~~l~v~~-------------~~~p~~~~~~~~~~~v~~g~~~~L  201 (471)
                      .|.+++.+|+|.|.|.+.+.        ..........|.|..             ..++.+.. ++. ..+.+|++++|
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~-~p~-~~v~~G~~v~L  159 (280)
T 3fku_X           82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQ-PPS-VSKGLRQTATL  159 (280)
T ss_dssp             EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBC-CSE-EEECTTCCEEE
T ss_pred             EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEe-CCc-EEEecCCCEEE
Confidence            99999999999999999886        112133344555543             11233322 222 67889999999


Q ss_pred             EEEccCCCC-CCeEEEEeCC--CCCC------------cCCCceEEee--eceEEEeccCCCCCeEEEEEEEcCC
Q psy17058        202 QCVLEAGEP-SPTQTWIRPD--NDGK------------FGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSA  259 (471)
Q Consensus       202 ~C~~~~~~p-~~~v~W~~~~--~~~~------------~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~  259 (471)
                      .|.+....+ .+.+.|+|..  ....            ...++.+...  ...|.|.+++.+|+|.|.|.+.+..
T Consensus       160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            999943243 4789999843  2211            1223333322  2359999999999999999998865

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.69  E-value=4.8e-16  Score=142.25  Aligned_cols=175  Identities=14%  Similarity=0.268  Sum_probs=115.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCC--CC-----------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDND--GK-----------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~--~~-----------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  .+.+.|+|....  ..                 ...++.+...    ...|.|.+++
T Consensus        31 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           31 PELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             cEEecCCCCEEEEEec-cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            5678899999999998 5555  578999996421  11                 1234444321    3479999999


Q ss_pred             CCCCeEEEEEEEcCC-C--ce--EEEEEEEEEe----------------CCceeeCCCccEEecCCCcEEEEEEEeecCC
Q psy17058        245 TGDEGKYTCIAENSA-G--KE--VMNAYIHVLT----------------LPAVTITPSEYVSVRPGEPLTLECEATGRPM  303 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~-~--~~--~~~~~l~V~~----------------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~  303 (471)
                      .+|+|.|.|.+.+.. +  ..  ...+.|.|..                .+.+. ..+....+.+|++++|.|.+.+.|.
T Consensus       110 ~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          110 SEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMS-QSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             GGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEE-CSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             HHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEE-cCCCEEEEcCCCcEEEEEEcCCccc
Confidence            999999999999864 2  11  1234666665                12222 2233567899999999999998776


Q ss_pred             C------eEEEEeCC--ccCCC--------------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy17058        304 P------TVSWVKYI--APFDR--------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITV  360 (471)
Q Consensus       304 ~------~i~W~~~~--~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  360 (471)
                      +      .+.|+|+.  ..+..              ...........+|+|.+++.+|+|.|+|.|.|..... ..-..|
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l  268 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKL  268 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEE
Confidence            5      89999963  22110              0000112234689999999999999999999854322 122456


Q ss_pred             EEecCC
Q psy17058        361 AVEHRP  366 (471)
Q Consensus       361 ~V~~~p  366 (471)
                      .|+..+
T Consensus       269 ~v~~~~  274 (291)
T 2gki_A          269 EIKHHH  274 (291)
T ss_dssp             EEECC-
T ss_pred             EEEeeE
Confidence            666554

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=4e-16  Score=138.74  Aligned_cols=173  Identities=16%  Similarity=0.167  Sum_probs=114.7

Q ss_pred             CCceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCC--CCC-----------------cCCCceEEe----eeceEEEecc
Q psy17058        188 NASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDN--DGK-----------------FGPDVEVYQ----ELGVLRFNNI  243 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~--~~~-----------------~~~~~~~~~----~~~~l~i~~~  243 (471)
                      +....+.+|+.++|.|.+... .+...+.|+|...  ...                 ...++.+..    ....|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence            345678899999999998332 2567899998642  110                 123444432    1347999999


Q ss_pred             CCCCCeEEEEEEEcCCC-----c--eEEEEEEEEEeC-------CceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEE
Q psy17058        244 ATGDEGKYTCIAENSAG-----K--EVMNAYIHVLTL-------PAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVS  307 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~~~-----~--~~~~~~l~V~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~  307 (471)
                      +.+|+|.|.|.+.+...     .  ......|.|...       |.+.+.......+.+|+.+.|.|.+.|. |. +.+.
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~  167 (242)
T 1hxm_B           88 EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIH  167 (242)
T ss_dssp             CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEE
T ss_pred             CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEE
Confidence            99999999999987531     1  112357777753       3333332222345679999999999986 64 6899


Q ss_pred             EEeCCc-cCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        308 WVKYIA-PFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       308 W~~~~~-~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |++++. .+.....      .......+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus       168 W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          168 WEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            999987 5532110      01112235788887765 5 9999999999987755555554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.68  E-value=2.8e-16  Score=142.95  Aligned_cols=172  Identities=17%  Similarity=0.293  Sum_probs=115.4

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC-C-------------------CCCcc------cCcEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ-L-------------------PPNMI------AGETL  142 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~-~-------------------~~~~~------~~~~L  142 (471)
                      ..+.+...|..+.+.+|++++|.|. .+.+.+.+.|+|++... .                   ..+..      ...+|
T Consensus        23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (279)
T 2wbj_D           23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL  102 (279)
T ss_dssp             CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred             ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence            4577888888999999999999999 67788899999973111 0                   11111      22489


Q ss_pred             EEcCCCCCCCeEEEEEEEecCC----c-eeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-C
Q psy17058        143 IINGITKADEGVYICSIQNAQG----N-VFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-P  212 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~~~~----~-~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~  212 (471)
                      .|.+++.+|+|.|+|.+.+..+    . .......+.|..    ..+|.+.+..+....+.+|+.++|.|.+....|. +
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  182 (279)
T 2wbj_D          103 TVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  182 (279)
T ss_dssp             EESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred             EEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCc
Confidence            9999999999999999998421    1 112234566653    1356665544333345579999999999444464 7


Q ss_pred             eEEEEeCCCCCCcCCCc-------------eEEeeeceEEEeccCCCC-CeEEEEEEEcCCCc
Q psy17058        213 TQTWIRPDNDGKFGPDV-------------EVYQELGVLRFNNIATGD-EGKYTCIAENSAGK  261 (471)
Q Consensus       213 ~v~W~~~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  261 (471)
                      .++|++++..+......             ..+...+.|.|......| .|.|+|.+.|....
T Consensus       183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            99999998764332110             011113347777777654 77899999987543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.68  E-value=2.1e-16  Score=139.23  Aligned_cols=167  Identities=14%  Similarity=0.247  Sum_probs=110.0

Q ss_pred             CCceeecCCCcEEEEee-CCCCC----CeEEEEeCC-CCCC------------------CCCcc-------cCcEEEEcC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPS----ATIKWSKDN-QEQL------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~----~~v~W~~~~-~~~~------------------~~~~~-------~~~~L~i~~  146 (471)
                      |..+.+.+|++++|.|. .+.+.    +.+.|+|+. +...                  ..+..       ....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            56788999999999999 66554    789999863 1111                  11111       126899999


Q ss_pred             CCCCCCeEEEEEEEecCC------c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEE
Q psy17058        147 ITKADEGVYICSIQNAQG------N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQT  215 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~~~~------~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~  215 (471)
                      ++.+|+|.|.|.+.+..+      .  .......|.|..  ..+|.+...++.. .+.+|+.++|.|.+....|.+ .++
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccc-cccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999998654      1  112235666652  1345555444322 356899999999995445776 999


Q ss_pred             EEeCCCCCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        216 WIRPDNDGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA  266 (471)
Q Consensus       216 W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  266 (471)
                      |++++..+......     ......+.|.|..+..+| |.|+|.+.|..+......
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            99988753211111     111224568899888866 999999999877655433

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.68  E-value=1.5e-15  Score=133.05  Aligned_cols=162  Identities=14%  Similarity=0.221  Sum_probs=108.8

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCC----------------------CCCcc-------cCcEEEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQL----------------------PPNMI-------AGETLII  144 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~----------------------~~~~~-------~~~~L~i  144 (471)
                      .|..+.+.+|++|+|.|. .+.  +...+.|+|......                      ..+..       ...+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            355678999999999999 543  357899998522110                      01111       1236999


Q ss_pred             cCCCCCCCeEEEEEEEecCC-ceeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEEeC
Q psy17058        145 NGITKADEGVYICSIQNAQG-NVFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWIRP  219 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~~~-~~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~  219 (471)
                      .+++.+|+|.|.|.+.+... ........+.|.  ...+|.+....... . .+|+.++|.|.+....|.  +.+.|+++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS-T-QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS-C-CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc-c-ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            99999999999999988641 213344566664  22345554222222 2 689999999999544675  49999999


Q ss_pred             CCCCCcC--------CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        220 DNDGKFG--------PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       220 ~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      +..+...        .... +...+.|.|......|.|.|+|.+.|..+.
T Consensus       164 g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDL-YTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             STTCEEEECCCEECSSSSC-EEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             CEECceEEcCceeeCCCCc-EEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            8775211        1111 112346899999999999999999998654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.68  E-value=4.6e-16  Score=135.69  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=127.0

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      ....+.+|+.++|.|.+ .+.|.+.+.|+|++..+....  ++.+..  ..+.|.|.++...|.|.|+|.+.|..|....
T Consensus        26 ~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  104 (215)
T 3mtr_A           26 VAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL  104 (215)
T ss_dssp             SEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEE
T ss_pred             ceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEE
Confidence            34678899999999999 788889999999998765543  333332  2567999999999999999999999999888


Q ss_pred             EEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe----ecCCC--eEEEEeCCccCCCccc--ccccCceeEEEEeecC
Q psy17058        265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT----GRPMP--TVSWVKYIAPFDRNLE--RDELTSRAVYTIASVR  336 (471)
Q Consensus       265 ~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~----g~p~~--~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~  336 (471)
                      .+.|.|..+|......   .....+..+.|.|...    +.|..  .+.|.+++........  .........|.|.++.
T Consensus       105 ~~~l~v~~~P~~p~~~---~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~  181 (215)
T 3mtr_A          105 EFILVQADTPSSPSID---QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK  181 (215)
T ss_dssp             EEEEEECCCCCCCEEE---EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCC
T ss_pred             EEEEEECCCCCCCcce---EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCC
Confidence            8888888766543221   1223467789999742    22333  4789887765322111  0111223789999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ..+.|.|+|.|.|..|....+..+.+..+|
T Consensus       182 ~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          182 PETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             TTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             CCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            999999999999999988766666666543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.68  E-value=1.3e-15  Score=134.49  Aligned_cols=172  Identities=14%  Similarity=0.233  Sum_probs=108.6

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      |..+.+.+|++++|.|. .+.+  ...+.|||... ...                  ..+..       ....|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            55678999999999999 5443  57899999631 111                  11111       12389999999


Q ss_pred             CCCCeEEEEEEEecCC--c---eeeeeEEEEEee--ccCCeeeecCCCceeEEcC-CeEEEEEEccCCCCCC-eEEEEe-
Q psy17058        149 KADEGVYICSIQNAQG--N---VFQDYASIQVDK--REMPRIRIHPNASQTFIVG-DRADIQCVLEAGEPSP-TQTWIR-  218 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~--~---~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g-~~~~L~C~~~~~~p~~-~v~W~~-  218 (471)
                      .+|+|.|.|.+.+..+  .   .......|.|..  ..+|.+....+.. .+..| +.++|.|.+....|.+ .++|++ 
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKYK  165 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence            9999999999984221  1   122345666653  2335554332222 34578 9999999995555775 999999 


Q ss_pred             CCCCCCcC---CC---ceEEeeeceEEEeccCC--CCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        219 PDNDGKFG---PD---VEVYQELGVLRFNNIAT--GDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       219 ~~~~~~~~---~~---~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      ++..+...   ..   ...+...+.|.|.....  +|.|.|+|.+.|..+.......+.+
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             TSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             CCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            77653220   00   01122245688888886  7899999999999887655555443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.67  E-value=1.2e-16  Score=144.72  Aligned_cols=171  Identities=15%  Similarity=0.215  Sum_probs=113.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC--------------C-----Cc------ccCcEEEEc
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP--------------P-----NM------IAGETLIIN  145 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~--------------~-----~~------~~~~~L~i~  145 (471)
                      ...+...|..+.+.+|++++|.|....+.+.+.|+|.......              .     +.      ....+|.|.
T Consensus        27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~  106 (270)
T 3qib_D           27 GMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ  106 (270)
T ss_dssp             -CCCEEECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence            4566777888999999999999994447789999994211100              0     00      135689999


Q ss_pred             CCCCCCCeEEEEEEEecCC---ceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEE
Q psy17058        146 GITKADEGVYICSIQNAQG---NVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWI  217 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~  217 (471)
                      +++.+|+|.|.|.+.+...   ........+.|..    ..+|.+.+.......+..|+.++|.|.+....|.+ .++|+
T Consensus       107 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  186 (270)
T 3qib_D          107 SSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  186 (270)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEE
Confidence            9999999999999986421   1123334555542    12455555444443455699999999994446666 89999


Q ss_pred             eCCCCCCcCCC-------------ceEEeeeceEEEeccCCCC-CeEEEEEEEcCCCc
Q psy17058        218 RPDNDGKFGPD-------------VEVYQELGVLRFNNIATGD-EGKYTCIAENSAGK  261 (471)
Q Consensus       218 ~~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  261 (471)
                      ++|..+.....             -..+...+.|.|.....+| .|.|+|.+.|....
T Consensus       187 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          187 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             ETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            99876433211             0111113457888887777 99999999987543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.67  E-value=3.9e-16  Score=130.62  Aligned_cols=147  Identities=17%  Similarity=0.168  Sum_probs=100.7

Q ss_pred             ceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC-------------CCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        100 QQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ-------------LPPNMI---AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~-------------~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+.+.+|++|+|.|....|.+.+.|++++...             ...+..   .+++|+|.+++.+|+|.|+|.+.+..
T Consensus         4 ~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence            56789999999999944488899999984311             111111   45789999999999999999998766


Q ss_pred             CceeeeeEEEEEeec-cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEec
Q psy17058        164 GNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN  242 (471)
Q Consensus       164 ~~~~~~~~~l~v~~~-~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~  242 (471)
                      +   .....|.|... ..|.+....         ...+|.|.+ .+.|.+.++|++++..+....       ...|.+. 
T Consensus        84 ~---~~~~~L~V~~~~~~p~i~~~~---------~~~~L~C~~-~~~p~p~i~W~~~~~~l~~~~-------~~~l~~~-  142 (171)
T 1ccz_A           84 D---TMKFFLYVLEMVSKPMIYWEC---------SNATLTCEV-LEGTDVELKLYQGKEHLRSLR-------QKTMSYQ-  142 (171)
T ss_dssp             S---CEEEEEEEECCCCCCEEEEET---------TTTEEEEEC-SSCSSCEEEEEETTEEEEEES-------SSEEEEE-
T ss_pred             C---cEEEEEEEECcCCCCEEEEec---------CCcEEEEEe-CCCCCcEEEEEECCEECcCCc-------ceEEEEe-
Confidence            5   33455555432 123332221         113799999 666889999999887643221       1223333 


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        243 IATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                       ...|.|.|+|.|.|..+..+..+.|
T Consensus       143 -~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          143 -WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             -CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             -ccCCCceEEEEEEcccCcccceeEE
Confidence             3678999999999998887665544

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.67  E-value=3.4e-16  Score=139.52  Aligned_cols=165  Identities=16%  Similarity=0.161  Sum_probs=112.1

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC--------------C---CcC-CCceEEee---eceEEEeccCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND--------------G---KFG-PDVEVYQE---LGVLRFNNIATGD  247 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~--------------~---~~~-~~~~~~~~---~~~l~i~~~~~~d  247 (471)
                      ....+.+|+.++|.|.  .+.+...+.|+|....              .   ... .++.+...   ...|.|.+++.+|
T Consensus        10 ~~v~v~~G~~v~L~C~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   87 (245)
T 4ei6_B           10 SHQIIDMGQMVTLNCD--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED   87 (245)
T ss_dssp             SEEEEETTCCEEEEEE--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred             ceEEecCCCCEEEEEE--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence            3457889999999994  4678889999982111              0   011 34444331   3379999999999


Q ss_pred             CeEEEEEEEcCC----CceEEEEEEEEE------eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccC
Q psy17058        248 EGKYTCIAENSA----GKEVMNAYIHVL------TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPF  315 (471)
Q Consensus       248 ~G~Y~C~~~~~~----~~~~~~~~l~V~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~  315 (471)
                      +|.|.|.+.+..    ........|.|.      .+|.+.+.......+.+|+.+.|.|.+.| .|.+ .+.|+++|..+
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l  167 (245)
T 4ei6_B           88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (245)
T ss_dssp             CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence            999999998532    223344567776      35555544333334566999999999998 5545 89999999887


Q ss_pred             CCcccc-------------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCceE
Q psy17058        316 DRNLER-------------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTEE  355 (471)
Q Consensus       316 ~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  355 (471)
                      ......             ......+.|.|.....+| .|.|+|.|.|......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            643211             111223458888888888 9999999999765443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.67  E-value=6.7e-16  Score=137.17  Aligned_cols=164  Identities=15%  Similarity=0.196  Sum_probs=111.4

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-----------------CcCCCceEEe---eeceEEEeccCCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-----------------KFGPDVEVYQ---ELGVLRFNNIATGDE  248 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-----------------~~~~~~~~~~---~~~~l~i~~~~~~d~  248 (471)
                      ....+.+|+.++|.|.+ .+ +.+.+.|+|.....                 ....++.+..   ....|.|.+++.+|+
T Consensus        10 ~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   87 (240)
T 3q5y_A           10 RHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   87 (240)
T ss_dssp             SEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             ceeeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence            34578899999999998 33 77899999832210                 0112333332   134699999999999


Q ss_pred             eEEEEEEEcCC---CceEEEEEEEEE------eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCC
Q psy17058        249 GKYTCIAENSA---GKEVMNAYIHVL------TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDR  317 (471)
Q Consensus       249 G~Y~C~~~~~~---~~~~~~~~l~V~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~  317 (471)
                      |.|.|.+.+..   ........|.|.      .+|.+.+.......+.+|+.+.|.|.+.| .|.+ .+.|+++|..+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~  167 (240)
T 3q5y_A           88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  167 (240)
T ss_dssp             EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence            99999998321   122334566666      34555544333334556899999999998 6656 7999999988754


Q ss_pred             ccccc---------ccCceeEEEEeecCCCC-CeEEEEEEEcCCCce
Q psy17058        318 NLERD---------ELTSRAVYTIASVRESD-AGQYKCIGKNSAGTE  354 (471)
Q Consensus       318 ~~~~~---------~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  354 (471)
                      .....         .....+.|.|.....+| .|.|+|.|.|.....
T Consensus       168 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          168 GVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             TEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             cEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            32211         11223458899988888 779999999976544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.67  E-value=2.5e-16  Score=141.12  Aligned_cols=172  Identities=14%  Similarity=0.222  Sum_probs=111.6

Q ss_pred             CCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCC--------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQ--------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~--------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++++|.|. .+  .+...+.|+|.....                    ...+..       ...+|+|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            56788999999999999 44  335689999852111                    001111       2235999999


Q ss_pred             CCCCCeEEEEEEEecC---CceeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCC
Q psy17058        148 TKADEGVYICSIQNAQ---GNVFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDN  221 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~---~~~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~  221 (471)
                      +.+|+|.|.|.+.+..   .........+.|.  ...+|.+...... ..+..|+.++|.|.+....|.+ .+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCC-cccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            9999999999998752   1112334456664  2245555543332 2456799999999995546765 999999887


Q ss_pred             CCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        222 DGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       222 ~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                      .+......     ..+...+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            42111000     122224679999999999 99999999988776666655543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.67  E-value=8.2e-16  Score=139.85  Aligned_cols=175  Identities=18%  Similarity=0.288  Sum_probs=113.5

Q ss_pred             CceeEEcCCeEEEEEEccCCC--CCCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEecc
Q psy17058        189 ASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      ....+.+|++++|.|.+ .+.  +...+.|+|......                   ...++.+..+    ...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            8 GAEVKKPGSSVKVSCTS-SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCEECTTCCEEEEEEE-CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCEEECCCCcEEEEEEe-eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            45578899999999998 443  567899998532111                   1123433321    137999999


Q ss_pred             CCCCCeEEEEEEEcC---------CCceEEEEEEEEEe---------------CCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058        244 ATGDEGKYTCIAENS---------AGKEVMNAYIHVLT---------------LPAVTITPSEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~---------~~~~~~~~~l~V~~---------------~p~~~~~~~~~~~~~~g~~v~l~C~~~  299 (471)
                      +.+|+|.|.|.+.+.         .........|.|..               ++.+...+ . ..+.+|++++|.|.+.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p-~-~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP-S-VSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS-E-EEECTTCCEEEEEECC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC-c-EEEecCCCEEEEEEec
Confidence            999999999999886         11122344566655               33333332 2 7889999999999998


Q ss_pred             e-cC-CCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc---eEEEE
Q psy17058        300 G-RP-MPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT---EEKVI  358 (471)
Q Consensus       300 g-~p-~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~---~~~~~  358 (471)
                      + .+ .+.+.|++..  ..+.              ............+|+|.+++.+|+|.|+|.+.|..+.   .....
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t  244 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGT  244 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCC
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCE
Confidence            7 44 3689999842  2211              0001111234457999999999999999999997632   22335


Q ss_pred             EEEEecCC
Q psy17058        359 TVAVEHRP  366 (471)
Q Consensus       359 ~l~V~~~p  366 (471)
                      .|.|...+
T Consensus       245 ~l~V~~~~  252 (280)
T 3fku_X          245 KLTVLGQP  252 (280)
T ss_dssp             EEEEC---
T ss_pred             EEEECCCC
Confidence            67776554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.66  E-value=9.4e-16  Score=138.63  Aligned_cols=161  Identities=19%  Similarity=0.285  Sum_probs=105.5

Q ss_pred             CceeEEcCCeEEEEEEccCCCC-----CCeEEEEeCCCC--CC------------cCCCceEEee--eceEEEeccCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEP-----SPTQTWIRPDND--GK------------FGPDVEVYQE--LGVLRFNNIATGD  247 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p-----~~~v~W~~~~~~--~~------------~~~~~~~~~~--~~~l~i~~~~~~d  247 (471)
                      ....+.+|++++|.|.+ .+.+     .+.+.|+|....  ..            ...++.+...  ...|.|.+++.+|
T Consensus        23 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  101 (268)
T 1x9q_A           23 LSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED  101 (268)
T ss_dssp             SEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence            34567899999999998 5555     478999986422  10            1234444321  3479999999999


Q ss_pred             CeEEEEEEEcCCCc-eEEEEEEEEEeCCc----------------------eeeCCCccEEecCCCcEEEEEEEeecCC-
Q psy17058        248 EGKYTCIAENSAGK-EVMNAYIHVLTLPA----------------------VTITPSEYVSVRPGEPLTLECEATGRPM-  303 (471)
Q Consensus       248 ~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~----------------------~~~~~~~~~~~~~g~~v~l~C~~~g~p~-  303 (471)
                      +|.|.|.+.+..+. ......|.|...+.                      +.+.......+.+|++++|.|.+.+.+. 
T Consensus       102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~  181 (268)
T 1x9q_A          102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG  181 (268)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence            99999999887442 22234566654321                      1122223457899999999999998764 


Q ss_pred             -CeEEEEeCC--ccCC---------------------Cccccc--ccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        304 -PTVSWVKYI--APFD---------------------RNLERD--ELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       304 -~~i~W~~~~--~~~~---------------------~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                       +.+.|+++.  ..+.                     ......  ......+|.|.+++.+|+|.|+|.|.|.
T Consensus       182 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          182 HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence             689999863  2110                     000000  0113468999999999999999999984

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.66  E-value=6.5e-16  Score=140.57  Aligned_cols=166  Identities=16%  Similarity=0.189  Sum_probs=111.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC-------------------cCCCceEEe---eeceEEEeccCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-------------------FGPDVEVYQ---ELGVLRFNNIATG  246 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~~~~---~~~~l~i~~~~~~  246 (471)
                      ....+.+|++++|.|.+ .+.+.+.+.|+|++....                   ...++.+..   ....|.|.+++.+
T Consensus        32 ~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (279)
T 2wbj_D           32 SWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE  110 (279)
T ss_dssp             SEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred             CeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence            45678899999999999 567778999998642100                   123444432   1347999999999


Q ss_pred             CCeEEEEEEEcCCC----c--eEEEEEEEEEe------CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCC
Q psy17058        247 DEGKYTCIAENSAG----K--EVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYI  312 (471)
Q Consensus       247 d~G~Y~C~~~~~~~----~--~~~~~~l~V~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~  312 (471)
                      |+|.|+|.+.+..+    .  ......|.|..      +|.+.+.......+.+|+.+.|.|.+.|. |. +.+.|++++
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g  190 (279)
T 2wbj_D          111 DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  190 (279)
T ss_dssp             GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETT
T ss_pred             CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            99999999998421    1  12234677764      45454432222234478999999999986 54 699999999


Q ss_pred             ccCCCcccc-------------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCceE
Q psy17058        313 APFDRNLER-------------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTEE  355 (471)
Q Consensus       313 ~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  355 (471)
                      ..+......             ......+.|.|......| .|.|+|.|.|......
T Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          191 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            887543211             011123457777777654 7789999999876554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.66  E-value=7.3e-17  Score=142.93  Aligned_cols=173  Identities=10%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             CeeeecCCCcee-EEcCCeEEEEEEccCCC--CCC-eEEEEeCCCCCCcCC-------CceEEeeeceEEEeccCCCCCe
Q psy17058        181 PRIRIHPNASQT-FIVGDRADIQCVLEAGE--PSP-TQTWIRPDNDGKFGP-------DVEVYQELGVLRFNNIATGDEG  249 (471)
Q Consensus       181 p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~--p~~-~v~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G  249 (471)
                      |.+.+.++.... +.+|+.++|.|.+....  |.+ .++|+|++..+....       ....+...+.|.|.+++.+|+|
T Consensus        16 P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g   95 (239)
T 1i1c_A           16 SSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGK   95 (239)
T ss_dssp             -CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCC
Confidence            444444443333 66899999999994332  665 999999986532110       0001122457999999999999


Q ss_pred             EEEEEEEcCCCceEE--EEEE--EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccccc-
Q psy17058        250 KYTCIAENSAGKEVM--NAYI--HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLERD-  322 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~~--~~~l--~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~~~-  322 (471)
                      .|+|.+.|..+....  .+.+  .+..+|.+.+.+.... ...|+.+.|.|.+.| +|. +.+.|+++|..+....... 
T Consensus        96 ~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  174 (239)
T 1i1c_A           96 TFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP  174 (239)
T ss_dssp             CEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC
T ss_pred             eEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCc
Confidence            999999998775322  2222  3445676665543321 234788999999998 555 3899999998875321100 


Q ss_pred             --c----cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        323 --E----LTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       323 --~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                        .    ....+.|.|.....+|.|.|+|.|.|.....
T Consensus       175 ~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN  212 (239)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             eECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence              1    1122345555555567999999999987654

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.66  E-value=8.3e-17  Score=142.20  Aligned_cols=194  Identities=15%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCcee-EEcCCeEEEEEEccCCC--C-CCeEEEEeCCCCCCcCCC
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQT-FIVGDRADIQCVLEAGE--P-SPTQTWIRPDNDGKFGPD  228 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~--p-~~~v~W~~~~~~~~~~~~  228 (471)
                      |.|.|...+..+.   ......+   .+|.+.+.++.... +..|+.++|.|.+....  | ...++|+++|..+.....
T Consensus         1 ~~~~~~~~~~~~~---c~~~~~~---~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~   74 (240)
T 4acp_A            1 GTKSCDKTHTCPP---CPAPELL---GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT   74 (240)
T ss_dssp             ----------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEE
T ss_pred             CceeeeeeecCCC---CCccccC---CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCcee
Confidence            7899998886442   1111111   24666666555444 55699999999995544  4 458999999876432110


Q ss_pred             --c-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCce--EEEEEE--EEEeCCceeeCCCccEEecCCCcEEEEEE
Q psy17058        229 --V-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGKE--VMNAYI--HVLTLPAVTITPSEYVSVRPGEPLTLECE  297 (471)
Q Consensus       229 --~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l--~V~~~p~~~~~~~~~~~~~~g~~v~l~C~  297 (471)
                        .     ..+...+.|.|.....+|.|.|+|++.|..+..  ...+.+  .+..+|.+.+.+.... ...|+.+.|.|.
T Consensus        75 ~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~  153 (240)
T 4acp_A           75 KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCL  153 (240)
T ss_dssp             CCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEE
T ss_pred             ccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEE
Confidence              0     011113467777777778999999999987643  333322  2345677766554322 234899999999


Q ss_pred             Eee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        298 ATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       298 ~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +.| +|.+ .+.|++++..+.....       .......+.|.|.....++.|.|+|.|.|..-.
T Consensus       154 ~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~  218 (240)
T 4acp_A          154 VKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  218 (240)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence            999 5654 8999999988653211       011223456677776667889999999998643

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.66  E-value=1e-15  Score=154.51  Aligned_cols=163  Identities=21%  Similarity=0.313  Sum_probs=118.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc------------CCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF------------GPDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      ...+.+|++++|.|.+..+.|.+.++|+|++..+..            ..+..+.. ++.|.|.+++.+|+|.|+|.+.|
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP-NGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT-TSCEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC-CceEEEeccccccCeEEEEEEEc
Confidence            346789999999999856788889999998763211            22333333 56899999999999999999999


Q ss_pred             CCCce-EEEEEEEEEeCCcee-eCCCccEEecCCCc-EEEEEEEee-cCCCeEEEEeCCccCCCcccc------------
Q psy17058        258 SAGKE-VMNAYIHVLTLPAVT-ITPSEYVSVRPGEP-LTLECEATG-RPMPTVSWVKYIAPFDRNLER------------  321 (471)
Q Consensus       258 ~~~~~-~~~~~l~V~~~p~~~-~~~~~~~~~~~g~~-v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~------------  321 (471)
                      ..+.. ...+.|.|..+|... +.+... .+.+|+. +.|.|.+.+ +|.+.++|++++..+......            
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  532 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE  532 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence            88876 778889998755422 222222 3555555 466999998 699999999999887532110            


Q ss_pred             -cccCceeEEEEeecC-CCCCeEEEEEEEcCCCce
Q psy17058        322 -DELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       322 -~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~  354 (471)
                       ......++|.|..++ .++.|.|+|.|+|..+..
T Consensus       533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             CceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence             111234679999988 555889999999996543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.66  E-value=2e-15  Score=135.62  Aligned_cols=164  Identities=17%  Similarity=0.276  Sum_probs=109.3

Q ss_pred             EcCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~  145 (471)
                      ..|..+.+.+|++|+|.|. .+.+  .+.+.|+|+.. ..+                   ..+..       ....|+|.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            3466788999999999999 5555  57899999732 111                   11111       13589999


Q ss_pred             CCCCCCCeEEEEEEEecCCc--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCC
Q psy17058        146 GITKADEGVYICSIQNAQGN--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPD  220 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~  220 (471)
                      +++.+|+|.|.|.+.+..+.  .......|.|..  ..+|.+....+.. .+.+|+.++|.|.+....|.+ .+.|++++
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g  169 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  169 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence            99999999999999986431  122334566653  2345555443322 456899999999995445765 99999998


Q ss_pred             CCCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        221 NDGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       221 ~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ..+......     ..+...+.|.|.....+| |.|+|.+.|....
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          170 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            764221100     112224578999888878 9999999986544

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.66  E-value=1.6e-15  Score=132.33  Aligned_cols=167  Identities=17%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CCC----------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DGK----------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~~----------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|++++|.|.+ .+.+  ...+.|+|+..  ...                ...++.+..+    ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            4467899999999998 4443  47899998642  110                1223333321    23799999999


Q ss_pred             CCCeEEEEEEEcCCCc---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCC
Q psy17058        246 GDEGKYTCIAENSAGK---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFD  316 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~  316 (471)
                      +|+|.|.|.+.+..+.   ....+.|.|..    +|.+...+.. ..+.+|+.+.|.|.+.|. |.+ .+.|++++..+.
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  166 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD  166 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence            9999999999886421   22335677763    4555443322 235689999999999986 877 999999987643


Q ss_pred             Cccccc-ccCceeEE--EEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        317 RNLERD-ELTSRAVY--TIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       317 ~~~~~~-~~~~~~~l--~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...... .......+  .+.....+| |.|+|.|.|..|.......
T Consensus       167 ~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~~  211 (215)
T 1c5d_H          167 VHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDKK  211 (215)
T ss_dssp             CCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             eEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEEe
Confidence            211100 00111111  123444456 9999999999988765443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.65  E-value=8.9e-17  Score=142.36  Aligned_cols=170  Identities=12%  Similarity=0.149  Sum_probs=109.2

Q ss_pred             CCCcEEEcCCcee--ecCCCcEEEEee-CCC---CCC-eEEEEeCCCCCCCCC-----------cccCcEEEEcCCCCCC
Q psy17058         90 QANEVQVTPRQQS--APEGSQVTIECK-SND---PSA-TIKWSKDNQEQLPPN-----------MIAGETLIINGITKAD  151 (471)
Q Consensus        90 ~~~~v~~~p~~~~--v~~G~~v~l~C~-~~~---p~~-~v~W~~~~~~~~~~~-----------~~~~~~L~i~~v~~~D  151 (471)
                      .+|.+.+.|....  +.+|++++|.|. .+.   |.+ .|.|+++++......           ......|.|.+++.+|
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccC
Confidence            4556656555555  789999999999 444   655 899999954322110           0123479999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEE--eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD  228 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v--~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~  228 (471)
                      +|.|+|.+.+..+. ......+.+  .+..+|.+.+.+.... ...|+.++|.|.+....|. ..++|+|+|..+.....
T Consensus        94 ~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  171 (239)
T 1i1c_A           94 GKTFKCKVNSGAFP-APIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN  171 (239)
T ss_dssp             TCCEEEEEECSSSS-SCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE
T ss_pred             CCeEEEEEecccCC-CCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee
Confidence            99999999998765 222223332  3456677766654432 2358899999999544565 58999999876432111


Q ss_pred             ceE-Eeee------ceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        229 VEV-YQEL------GVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       229 ~~~-~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ... ...+      +.|.|......|.|.|+|.+.|....
T Consensus       172 ~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          172 TPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            111 1112      23455555555799999999997644

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.65  E-value=8.1e-16  Score=137.72  Aligned_cols=172  Identities=17%  Similarity=0.224  Sum_probs=114.8

Q ss_pred             ceeEEcCCeEEEEEEccC-CCCCCeEEEEeCCCCC-------------------CcCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDG-------------------KFGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~-~~p~~~v~W~~~~~~~-------------------~~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|++++|.|.+.. ..+...+.|+|.....                   ....++.+..+    ...|.|.+++.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS   88 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            456889999999999832 1235689999853210                   11234444332    23499999999


Q ss_pred             CCCeEEEEEEEcCC----CceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccC
Q psy17058        246 GDEGKYTCIAENSA----GKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPF  315 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~----~~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~  315 (471)
                      +|+|.|.|.+.+..    ........|.|.    .+|.+...+. ...+..|+.+.|.|.+.+ .|.+ .+.|++++..+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~  167 (253)
T 3liz_H           89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (253)
T ss_dssp             GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC-CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeec
Confidence            99999999998752    222333566665    3455543322 234567999999999998 7766 89999998744


Q ss_pred             CCc-----ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        316 DRN-----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       316 ~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      ...     .........+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       168 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          168 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            211     000122334679999999999 99999999999988777777665

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.65  E-value=6e-16  Score=138.42  Aligned_cols=167  Identities=16%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             ceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCC--CC-----------------cCCCceEEee----eceEEEeccC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDND--GK-----------------FGPDVEVYQE----LGVLRFNNIA  244 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~--~~-----------------~~~~~~~~~~----~~~l~i~~~~  244 (471)
                      ...+.+|++++|.|.+ .+.+  ...+.|+|....  ..                 ...++.+..+    ...|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAA-SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CEEECTTCEEEEEEEE-ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CEEEcCCCcEEEEEEe-ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            3467899999999998 4444  578999986421  10                 1234444321    3479999999


Q ss_pred             CCCCeEEEEEEEcCCC----------c---eEEEEEEEEEe----CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-e
Q psy17058        245 TGDEGKYTCIAENSAG----------K---EVMNAYIHVLT----LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-T  305 (471)
Q Consensus       245 ~~d~G~Y~C~~~~~~~----------~---~~~~~~l~V~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~  305 (471)
                      .+|+|.|.|.+.+..+          .   ......|.|..    +|.+.+..+. ..+.+|+.++|.|.+.|. |.+ .
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~~g~~P~pi~  166 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVT  166 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCCE
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEEeeEECCCcE
Confidence            9999999999998754          1   11234677764    3544443222 245689999999999985 777 9


Q ss_pred             EEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        306 VSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       306 i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      +.|++++..+.....      .......+.|.|.....+| |.|+|.|.|..........
T Consensus       167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~  225 (257)
T 3bn9_D          167 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  225 (257)
T ss_dssp             EEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEE
T ss_pred             EEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEE
Confidence            999999876432110      0011233567888888778 9999999997665444433

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.65  E-value=1.2e-16  Score=138.45  Aligned_cols=172  Identities=15%  Similarity=0.204  Sum_probs=103.1

Q ss_pred             CeeeecCCCcee-EEcCCeEEEEEEccCCCC---CCeEEEEeCCCCCCcCC-CceEEeeeceEEE------eccCCCCCe
Q psy17058        181 PRIRIHPNASQT-FIVGDRADIQCVLEAGEP---SPTQTWIRPDNDGKFGP-DVEVYQELGVLRF------NNIATGDEG  249 (471)
Q Consensus       181 p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~~~~~~-~~~~~~~~~~l~i------~~~~~~d~G  249 (471)
                      |.+.+.++.... +.+|+.++|.|.+....|   ...++|+|++..+.... .......++.+.+      ......|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            444454443333 368999999999943332   35999999986533211 0011111233333      233334599


Q ss_pred             EEEEEEEcCCCceEEEEEE----EEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCcccc-c
Q psy17058        250 KYTCIAENSAGKEVMNAYI----HVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLER-D  322 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~~~~~l----~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~  322 (471)
                      .|+|.+.|..+.......+    .+..+|.+.+.+.....+ .|..+.|.|.+.|. |+ +.+.|+++|..+...... .
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  160 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP  160 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCc
Confidence            9999999987654233233    334567666554332223 45669999999984 54 399999999876532110 0


Q ss_pred             --c----cCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        323 --E----LTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       323 --~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                        .    ....+.|.|.....+|.|.|+|.|.|....
T Consensus       161 ~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          161 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence              1    112234556665567899999999998654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.65  E-value=9.3e-16  Score=136.02  Aligned_cols=167  Identities=17%  Similarity=0.332  Sum_probs=107.8

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v~~  149 (471)
                      +...|..+.+.+|++++|.|....+.+.+.|+|++...                  ...+..      ....|.|.+++.
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             cccCCCeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            44567788999999999999933457899999973211                  111111      234899999999


Q ss_pred             CCCeEEEEEEEecCC----ceeeeeEEEEEeec----cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCC
Q psy17058        150 ADEGVYICSIQNAQG----NVFQDYASIQVDKR----EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPD  220 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~~----~~~~~~~~l~v~~~----~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~  220 (471)
                      +|+|.|.|.+.+..+    ........|.|...    .+|.+.+..+....+.+|+.++|.|.+....|. +.+.|++++
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  161 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  161 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence            999999999998632    11223345666532    356666554444455689999999999544565 499999988


Q ss_pred             CCCCcCCCc---eEEeeece------EEEeccCCCC-CeEEEEEEEcCCC
Q psy17058        221 NDGKFGPDV---EVYQELGV------LRFNNIATGD-EGKYTCIAENSAG  260 (471)
Q Consensus       221 ~~~~~~~~~---~~~~~~~~------l~i~~~~~~d-~G~Y~C~~~~~~~  260 (471)
                      ..+......   .....++.      |.|......| .|.|+|.+.|...
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            764332111   11122233      3333333333 6789999998743

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.64  E-value=1.4e-15  Score=136.04  Aligned_cols=170  Identities=15%  Similarity=0.271  Sum_probs=111.2

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGI  147 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v  147 (471)
                      ..+...|..+.+.+|++++|.|....+.+.+.|+++....                  ...+..      ....|.|.++
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            3456667888999999999999933457899999963111                  111111      2358999999


Q ss_pred             CCCCCeEEEEEEEecCC--ceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCC
Q psy17058        148 TKADEGVYICSIQNAQG--NVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPD  220 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~--~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~  220 (471)
                      +.+|+|.|.|.+.+...  ........+.|..    ..+|.+.+..+....+.+|+.++|.|.+....|. +.++|++++
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            99999999999988521  1122234566653    2456666554433345579999999999544565 599999988


Q ss_pred             CCCCcCCCc-------------eEEeeeceEEEeccCCC-CCeEEEEEEEcCCCc
Q psy17058        221 NDGKFGPDV-------------EVYQELGVLRFNNIATG-DEGKYTCIAENSAGK  261 (471)
Q Consensus       221 ~~~~~~~~~-------------~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~  261 (471)
                      ..+......             ..+...+.|.|...... +.|.|+|.+.|....
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            754322110             01111334777766654 678999999997543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.64  E-value=3.1e-15  Score=130.46  Aligned_cols=177  Identities=21%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc----c-----cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM----I-----AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~----~-----~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      .+|.| ..|..+.+.+|+.+.|.|. .+.|.+.+.|+++ +..+....    .     ....|.|.+++.+|+|.|+|.|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRD-GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEET-TEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEEC-CeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            45666 5777889999999999999 8888999999999 55554331    1     2578999999999999999999


Q ss_pred             EecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEcc---CCCCCC--eEEEEeCCCCCCcCCCceEE--
Q psy17058        160 QNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE---AGEPSP--TQTWIRPDNDGKFGPDVEVY--  232 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~---~~~p~~--~v~W~~~~~~~~~~~~~~~~--  232 (471)
                      .|..|. ......+.|.  .+|......   .....+..+.|.|...   .+.|..  .+.|.+++...-........  
T Consensus        96 ~n~~g~-~~~~~~l~v~--~~P~~p~~~---~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~  169 (215)
T 3mtr_A           96 VNRIGQ-ESLEFILVQA--DTPSSPSID---QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA  169 (215)
T ss_dssp             ECSSCE-EEEEEEEEEC--CCCCCCEEE---EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHH
T ss_pred             EECCCc-eEEEEEEEEC--CCCCCCcce---EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccc
Confidence            999887 5555555554  333221111   1123567889999742   222333  47888876541111100000  


Q ss_pred             eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCC
Q psy17058        233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p  274 (471)
                      .....|.|.++...+.|.|+|.|.|..|....+..+.+..+|
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            112679999999999999999999999876655555555443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.64  E-value=2e-15  Score=133.92  Aligned_cols=164  Identities=15%  Similarity=0.230  Sum_probs=107.5

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC-----------------cCCCceEEe---eeceEEEeccCCCCC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-----------------FGPDVEVYQ---ELGVLRFNNIATGDE  248 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~-----------------~~~~~~~~~---~~~~l~i~~~~~~d~  248 (471)
                      ....+.+|+.++|.|.+ . .+.+.+.|+|++....                 ...++.+..   ....|.|.+++.+|+
T Consensus         7 ~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            7 RNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             SEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            45578899999999998 3 4578999999753210                 123343332   234799999999999


Q ss_pred             eEEEEEEEcCCC---c--eEEEEEEEEEe------CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccC
Q psy17058        249 GKYTCIAENSAG---K--EVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPF  315 (471)
Q Consensus       249 G~Y~C~~~~~~~---~--~~~~~~l~V~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~  315 (471)
                      |.|.|.+.+..+   .  ......|.|..      +|.+.+.......+.+|+.+.|.|.+.|. |.+ .+.|++++..+
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~  164 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  164 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence            999999998642   1  12234577764      45555443332345679999999999985 655 99999999877


Q ss_pred             CCccccc---c--c----CceeEEEEeecCCCC-CeEEEEEEEcCCCce
Q psy17058        316 DRNLERD---E--L----TSRAVYTIASVRESD-AGQYKCIGKNSAGTE  354 (471)
Q Consensus       316 ~~~~~~~---~--~----~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  354 (471)
                      .......   .  .    ...+.|.|......| .|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  213 (238)
T 1bec_A          165 HSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  213 (238)
T ss_dssp             CTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred             CCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence            5432110   0  0    112334444444444 678999999975443

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.63  E-value=3.1e-16  Score=138.31  Aligned_cols=167  Identities=13%  Similarity=0.228  Sum_probs=111.2

Q ss_pred             CCCcEE-EcCCceeecCCCcEEEEee-CC-CCC--CeEEEEeCCCCCC-CCCcc-----------cCcEEEEcCCCCCCC
Q psy17058         90 QANEVQ-VTPRQQSAPEGSQVTIECK-SN-DPS--ATIKWSKDNQEQL-PPNMI-----------AGETLIINGITKADE  152 (471)
Q Consensus        90 ~~~~v~-~~p~~~~v~~G~~v~l~C~-~~-~p~--~~v~W~~~~~~~~-~~~~~-----------~~~~L~i~~v~~~D~  152 (471)
                      .+|.+. ..|....+.+|++++|.|. .+ .|.  ..+.|+++ +..+ .....           ....|.|.+++.+|+
T Consensus        11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~-g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~   89 (231)
T 2w59_A           11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTRE-KSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSG   89 (231)
T ss_dssp             -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECS-SSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcC-CeeccccccccceECCCCcEEEEEEEEecchhccCC
Confidence            345555 4577777899999999999 55 463  49999988 5444 21110           123699999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCC
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGP  227 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~  227 (471)
                      |.|+|.+.|..+. .  ...+.|..    ..+|.+.+.......+ .+..++|.|.+....| .+.++|+|+|..+....
T Consensus        90 g~Y~C~~~~~~~~-~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  165 (231)
T 2w59_A           90 ERFTCTVQHEELP-L--PLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATE  165 (231)
T ss_dssp             CCEEEEEECTTCS-S--CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGG
T ss_pred             CEEEEEEEcCCCC-C--ceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcc
Confidence            9999999987654 2  23334432    2456665544332222 3567999999954455 47999999987754332


Q ss_pred             Cc----e--------------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        228 DV----E--------------VYQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       228 ~~----~--------------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ..    .              .+...+.|.|......|.|.|+|.|.|....
T Consensus       166 ~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          166 FVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            10    0              1111245778888888899999999997654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=136.12  Aligned_cols=164  Identities=15%  Similarity=0.204  Sum_probs=107.6

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-----------------CC-CceEEeeec-eEEEeccCCCCCe
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-----------------GP-DVEVYQELG-VLRFNNIATGDEG  249 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----------------~~-~~~~~~~~~-~l~i~~~~~~d~G  249 (471)
                      ....+.+|+.++|.|.+ .+.+...+.|+|.......                 .. ++.+..... .|.|.+++.+|+|
T Consensus         9 ~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG   87 (253)
T 3to4_D            9 RWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (253)
T ss_dssp             SEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred             CeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence            34578899999999998 6777789999984321110                 01 222222111 1999999999999


Q ss_pred             EEEEEEEcCCC------ceEEEEEEEEE------eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccC
Q psy17058        250 KYTCIAENSAG------KEVMNAYIHVL------TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPF  315 (471)
Q Consensus       250 ~Y~C~~~~~~~------~~~~~~~l~V~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~  315 (471)
                      .|.|.+.+..+      .......|.|.      .+|.+.+.+.....+..|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l  167 (253)
T 3to4_D           88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (253)
T ss_dssp             EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEEC
Confidence            99999987543      11223456665      34444433222222335789999999998 6666 89999999887


Q ss_pred             CCcccc-------------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCc
Q psy17058        316 DRNLER-------------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGT  353 (471)
Q Consensus       316 ~~~~~~-------------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  353 (471)
                      ......             ......+.|.|.....+| .|.|+|.|.|....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          168 HSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            543211             112223578888887777 77999999997543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.63  E-value=4.3e-15  Score=129.47  Aligned_cols=165  Identities=15%  Similarity=0.272  Sum_probs=104.9

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|+.. ...                  ..+..       ....|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            66788999999999999 5543  57899998731 111                  01111       12489999999


Q ss_pred             CCCCeEEEEEEEecCCc--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCC
Q psy17058        149 KADEGVYICSIQNAQGN--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDG  223 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~  223 (471)
                      .+|+|.|.|.+.+..+.  .......|.|..  ..+|.+...++.. .+.+|+.++|.|.+....|.+ .++|++++..+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999999886421  122335666652  2345555443322 356899999999995444776 99999998753


Q ss_pred             CcCCCceEEeeeceE----EEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        224 KFGPDVEVYQELGVL----RFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       224 ~~~~~~~~~~~~~~l----~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      .......... .+.+    .|.....+| |.|+|.+.|..+.....
T Consensus       166 ~~~~~~~~~~-~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          166 DVHTFPAVLQ-SGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             SCCBCCCEEE-TTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ceEecCcccC-CCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            3221111111 1211    122344355 99999999987765433

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.63  E-value=4.2e-14  Score=146.48  Aligned_cols=248  Identities=14%  Similarity=0.169  Sum_probs=163.2

Q ss_pred             cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCC-CeEEEEEEEecCCceeeeeEEEEEe-eccC
Q psy17058        104 PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD-EGVYICSIQNAQGNVFQDYASIQVD-KREM  180 (471)
Q Consensus       104 ~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~l~v~-~~~~  180 (471)
                      ..+.++.|.|. .+.|.+.+.|.++ +..+..  .....+.|..+...+ ++.|+|.+.+..|........+... ...+
T Consensus        89 ~~~g~l~v~c~~~g~P~p~i~W~k~-g~~~~~--~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~  165 (731)
T 2v5y_A           89 SPPGLLNVYVKVNNGPLGNPIWNIS-GDPTRT--WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT  165 (731)
T ss_dssp             SCSEEEEEEEEETTCCCCSEEEEEC-CCCCSS--CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred             CCcceEEEEEecCCCCccceeEEEe-CCcCCc--eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence            33458999999 8899999999999 544322  123467777653333 5889998877776533222222221 1234


Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEE-EE--eCCCCCCcCCCceEE--eeeceEEEeccCCCCCeEEEEEE
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT-WI--RPDNDGKFGPDVEVY--QELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      |.+. .+ ....+.+|+.++|.|.+ .+.|.+.+. |+  +++..+.......+.  ...+.|.|.++...|.|.|+|.|
T Consensus       166 p~~~-~~-~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          166 PHFL-RI-QNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             CEEC-CC-CCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cccc-cc-cceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEE
Confidence            4443 33 45788999999999999 888988887 87  666654332111111  12468999999999999999999


Q ss_pred             EcCCCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee---cCC-C--eEEEEeCCccCCCcccccccCcee
Q psy17058        256 ENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG---RPM-P--TVSWVKYIAPFDRNLERDELTSRA  328 (471)
Q Consensus       256 ~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g---~p~-~--~i~W~~~~~~~~~~~~~~~~~~~~  328 (471)
                      .|..|. .+..+.|.|..+|.....+  .........+.|.|....   ..+ .  .+.|...+....    ........
T Consensus       243 ~n~~G~~~s~~~~l~V~~~P~~~~~p--~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~----~~~~~~~~  316 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEPPVPIAPP--QLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWN----DRQPVDST  316 (731)
T ss_dssp             EETTEEEECCCEEEEEECCCCBSSCC--EEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCE----EEEECCSS
T ss_pred             ECCCCCcceeeEEEEEecCCCCCCCc--ceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCce----EEeccCcc
Confidence            999987 6667788888877654333  223335678889887632   122 2  467766533211    11123347


Q ss_pred             EEEEeecCCCCCeEEEEEEE--cCCCceEEEEEEEEe
Q psy17058        329 VYTIASVRESDAGQYKCIGK--NSAGTEEKVITVAVE  363 (471)
Q Consensus       329 ~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~V~  363 (471)
                      .+.|.++...+...|+|.|.  |..|....+..+.+.
T Consensus       317 ~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~  353 (731)
T 2v5y_A          317 SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR  353 (731)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE
T ss_pred             eEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee
Confidence            88999999999889999999  999876544333443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.62  E-value=3e-15  Score=114.22  Aligned_cols=93  Identities=26%  Similarity=0.359  Sum_probs=76.1

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...+ .++.+.+|+++.|.|.+.|.|.|.+.|++++..+....  .........+|.|.+++.+|+|.|+|.|.|.
T Consensus        13 pP~f~~~p-~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           13 PPCFLRFP-RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCC-CcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            45554444 46789999999999999999999999999999886442  2223345678999999999999999999999


Q ss_pred             CCceEEEEEEEEecCC
Q psy17058        351 AGTEEKVITVAVEHRP  366 (471)
Q Consensus       351 ~g~~~~~~~l~V~~~p  366 (471)
                      .|..+.++.|.|..+|
T Consensus        92 ~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TEEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999998764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.62  E-value=1.2e-15  Score=136.38  Aligned_cols=163  Identities=16%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCCC-CC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQE-QL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~~-~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++++|.|. .+.+  .+.+.|+|.... ..                   ..+..       ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            45678999999999999 5544  578999997321 11                   11111       1348999999


Q ss_pred             CCCCCeEEEEEEEecCC----------c--eeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-
Q psy17058        148 TKADEGVYICSIQNAQG----------N--VFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-  212 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-  212 (471)
                      +.+|+|.|.|.+.+..+          .  .......|.|..  ..+|.+.+..+.. .+.+|+.++|.|.+....|.+ 
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~-~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCC
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc-cccCCCcEEEEEEEeeEECCCc
Confidence            99999999999998653          1  122334666653  2345554433322 356899999999995445776 


Q ss_pred             eEEEEeCCCCCCcCCCce------EEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        213 TQTWIRPDNDGKFGPDVE------VYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       213 ~v~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      .++|++++..+.......      .+...+.|.|..+...| |.|+|.+.|.....
T Consensus       166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            999999987632211000      11113457777777777 99999999965443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.62  E-value=9.9e-16  Score=137.19  Aligned_cols=165  Identities=15%  Similarity=0.278  Sum_probs=108.5

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC------------------CC-Ccc-----cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL------------------PP-NMI-----AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~------------------~~-~~~-----~~~~L~i~~v~  148 (471)
                      +...|..+.+.+|++++|.|. .+.+...+.|+|......                  .. +..     ... |.|.+++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~   82 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN   82 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence            345577888999999999998 777778999998411110                  00 111     112 9999999


Q ss_pred             CCCCeEEEEEEEecCC---c--eeeeeEEEEEee----ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEe
Q psy17058        149 KADEGVYICSIQNAQG---N--VFQDYASIQVDK----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIR  218 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~  218 (471)
                      .+|+|.|+|.+.+..+   .  .......+.|..    ..+|.+.+.......+..|+.++|.|.+....|.+ .++|++
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            9999999999986543   1  122334555542    24555555443333344678999999995546766 899999


Q ss_pred             CCCCCCcCCC-------------ceEEeeeceEEEeccCCCC-CeEEEEEEEcCC
Q psy17058        219 PDNDGKFGPD-------------VEVYQELGVLRFNNIATGD-EGKYTCIAENSA  259 (471)
Q Consensus       219 ~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~  259 (471)
                      ++..+.....             ...+...+.|.|.....+| .|.|+|.+.|..
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            8876433110             0111113467888887777 789999999864

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=3.6e-15  Score=131.38  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             CCceeEEcCCeEEEEEEccCCC--CCCeEEEEeCCCC--CC----------------cCCCceEEee----eceEEEecc
Q psy17058        188 NASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDND--GK----------------FGPDVEVYQE----LGVLRFNNI  243 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~--p~~~v~W~~~~~~--~~----------------~~~~~~~~~~----~~~l~i~~~  243 (471)
                      +....+.+|+.++|.|.+ .+.  +...+.|+|....  ..                ...++.+..+    ...|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (230)
T 1ypz_F            8 EISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (230)
T ss_dssp             CSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence            345578899999999998 432  4578999986421  10                1233333321    237999999


Q ss_pred             CCCCCeEEEEEEEcC--CC--ceEEEEEEEEEe---------CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEE
Q psy17058        244 ATGDEGKYTCIAENS--AG--KEVMNAYIHVLT---------LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSW  308 (471)
Q Consensus       244 ~~~d~G~Y~C~~~~~--~~--~~~~~~~l~V~~---------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W  308 (471)
                      +.+|+|.|.|.+.+.  ..  .....+.|.|..         +|...+.++....+..|+.++|.|.+.|. |. +.+.|
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W  166 (230)
T 1ypz_F           87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW  166 (230)
T ss_dssp             CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred             ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence            999999999999874  11  112234677762         23333332222234568999999999985 75 59999


Q ss_pred             Ee-CCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        309 VK-YIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       309 ~~-~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ++ ++..+.....      .......+.|.|..... + |.|+|.|.|..+..
T Consensus       167 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          167 KEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             ECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             EccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            99 7776542211      01112235788888775 4 99999999987754

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.61  E-value=6.9e-15  Score=131.56  Aligned_cols=166  Identities=15%  Similarity=0.172  Sum_probs=109.7

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC-----------------cCCCceEEe---eeceEEEeccCCCC
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-----------------FGPDVEVYQ---ELGVLRFNNIATGD  247 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~-----------------~~~~~~~~~---~~~~l~i~~~~~~d  247 (471)
                      +....+.+|+.++|.|.+ . .+...+.|+|......                 ...++.+..   ....|.|.+++.+|
T Consensus        10 p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   87 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   87 (252)
T ss_dssp             CSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             CCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence            345678899999999998 3 4578999998642100                 123333322   13579999999999


Q ss_pred             CeEEEEEEEcCC---CceEEEEEEEEEe------CCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCC
Q psy17058        248 EGKYTCIAENSA---GKEVMNAYIHVLT------LPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFD  316 (471)
Q Consensus       248 ~G~Y~C~~~~~~---~~~~~~~~l~V~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~  316 (471)
                      +|.|.|.+.+..   ........|.|..      +|.+.+.......+.+|+.+.|.|.+.|. |.+ .+.|++++..+.
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            999999999862   1112234566653      45555443222234568999999999985 654 999999998765


Q ss_pred             Cccccc-------------ccCceeEEEEeecCCC-CCeEEEEEEEcCCCceE
Q psy17058        317 RNLERD-------------ELTSRAVYTIASVRES-DAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       317 ~~~~~~-------------~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~  355 (471)
                      ......             .....+.|.|...... |.|.|+|.|.|......
T Consensus       168 ~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          168 SGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             SSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            432110             1112345777776654 67899999999866543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=3.4e-15  Score=131.55  Aligned_cols=166  Identities=22%  Similarity=0.301  Sum_probs=106.1

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLII  144 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i  144 (471)
                      +...|..+.+.+|++++|.|. .+.  +...+.|+|... ...                  ..+..       ...+|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            455577889999999999999 443  567899998632 111                  11111       1238999


Q ss_pred             cCCCCCCCeEEEEEEEec--CC-ceeeeeEEEEEeec-------cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-Ce
Q psy17058        145 NGITKADEGVYICSIQNA--QG-NVFQDYASIQVDKR-------EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PT  213 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~--~~-~~~~~~~~l~v~~~-------~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~  213 (471)
                      .+++.+|+|.|.|.+.+.  .. ........|.|...       .+|...+..+....+.+|+.++|.|.+....|. +.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence            999999999999999874  11 11223456666521       123333332323334578999999999545575 69


Q ss_pred             EEEEe-CCCCCCcCCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        214 QTWIR-PDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       214 v~W~~-~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ++|++ ++..+........      +...+.|.|..... + |.|+|.+.|....
T Consensus       164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            99999 7665432111011      11134688887775 4 9999999997654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.60  E-value=6.8e-16  Score=133.74  Aligned_cols=167  Identities=11%  Similarity=0.174  Sum_probs=101.8

Q ss_pred             CcEEEcCCceee--cCCCcEEEEee-CCCC----CCeEEEEeCCCCCCCCCc------ccCcEEEEcC---CCCC---CC
Q psy17058         92 NEVQVTPRQQSA--PEGSQVTIECK-SNDP----SATIKWSKDNQEQLPPNM------IAGETLIING---ITKA---DE  152 (471)
Q Consensus        92 ~~v~~~p~~~~v--~~G~~v~l~C~-~~~p----~~~v~W~~~~~~~~~~~~------~~~~~L~i~~---v~~~---D~  152 (471)
                      |.+.+.|....+  .+|+++.|.|. .+.+    ...|.|+|+ +..+....      ..++.|.+..   +...   |+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVD-GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEET-TEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEEC-CccccCcccCCceeccCCcEEEEEEEEEEHHHccCC
Confidence            556666655544  79999999999 5443    459999999 43332211      1233343322   3344   49


Q ss_pred             eEEEEEEEecCCceeeeeEEEEE--eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCc
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDV  229 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v--~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~  229 (471)
                      |.|+|.+.|..+. ......+.+  .+..+|.+.+.+.....+ .|..++|.|.+.+..|. +.++|+++|..+......
T Consensus        81 g~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  158 (207)
T 1l6x_A           81 KEYKCKVSNKALP-APIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT  158 (207)
T ss_dssp             CCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             ceEEEEEEcCcCC-cceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCcccc
Confidence            9999999998765 322333432  344567766655433223 56679999999443555 599999998764321111


Q ss_pred             eE-Eeee------ceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        230 EV-YQEL------GVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       230 ~~-~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .. ...+      +.|.|......|.|.|+|.+.|....
T Consensus       159 ~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          159 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            11 1112      23555555556799999999997643

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.58  E-value=1e-14  Score=128.73  Aligned_cols=171  Identities=15%  Similarity=0.160  Sum_probs=107.3

Q ss_pred             eeEEcCCeEEEEEEccCC---CCCCeEEEEeCCCCCC---------------------cCCCceEEee----eceEEEec
Q psy17058        191 QTFIVGDRADIQCVLEAG---EPSPTQTWIRPDNDGK---------------------FGPDVEVYQE----LGVLRFNN  242 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~---~p~~~v~W~~~~~~~~---------------------~~~~~~~~~~----~~~l~i~~  242 (471)
                      ..+.+|++++|.|.+...   .+...+.|||......                     ...++.+...    ...|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            467899999999998321   1223459998432100                     1123333321    23599999


Q ss_pred             cCCCCCeEEEEEEEcCC--------CceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEeecCC--CeEEE
Q psy17058        243 IATGDEGKYTCIAENSA--------GKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRPM--PTVSW  308 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W  308 (471)
                      ++.+|+|.|.|.+.+..        ........|.|.    .+|.+...+. ...+..|+.+.|.|.+.+.++  ..+.|
T Consensus        90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~v~W  168 (232)
T 3qhz_H           90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW  168 (232)
T ss_dssp             CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCEEEE
T ss_pred             CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecc-cccccCCCcEEEEEEEeeEeCCCeEEEE
Confidence            99999999999998753        112233456664    3454543222 234567999999999998443  36889


Q ss_pred             EeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        309 VKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       309 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      ++++..+....      ........+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       169 ~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          169 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            99886543110      01112234578899988889 99999999998888777766554

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.58  E-value=7e-15  Score=130.38  Aligned_cols=170  Identities=16%  Similarity=0.236  Sum_probs=109.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCC----CCeEEEEeCCCCCC------------------------cCCCceEEee----ece
Q psy17058        190 SQTFIVGDRADIQCVLEAGEP----SPTQTWIRPDNDGK------------------------FGPDVEVYQE----LGV  237 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p----~~~v~W~~~~~~~~------------------------~~~~~~~~~~----~~~  237 (471)
                      ...+.+|+.++|.|.+ .+.+    ...+.||+......                        ...++.+..+    ...
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            9 PTLVEASETLSLTCAV-SGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             CSEECTTSCEEEEEEE-ESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CEEEcCCCCEEEEEEE-cCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            4568899999999998 4433    34899998532211                        0122323221    235


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCC-------------ceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee
Q psy17058        238 LRFNNIATGDEGKYTCIAENSAG-------------KEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG  300 (471)
Q Consensus       238 l~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g  300 (471)
                      |.|.+++.+|+|.|.|.+.+..+             .......|.|.    ..|.+...+. ...+..|+.+.|.|.+.+
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~l~C~~~~  166 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKD  166 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECC-CCCC--TTEEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECC-ChhhccCCcEEEEEEEee
Confidence            99999999999999999976531             01122345554    2344443222 223457999999999998


Q ss_pred             -cCCC-eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        301 -RPMP-TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       301 -~p~~-~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                       .|.+ .+.|++++..+....      ........+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       167 ~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          167 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence             5544 689999887543111      01112234578899988888 9999999999887776666554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.58  E-value=2.6e-16  Score=137.18  Aligned_cols=171  Identities=21%  Similarity=0.300  Sum_probs=107.9

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCCcC--------CCceEEeeeceEEEeccCCCCCe
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGKFG--------PDVEVYQELGVLRFNNIATGDEG  249 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G  249 (471)
                      +|.+.+..+....+.+|+.++|.|.+....|  .+.+.| + +..+...        ..... .....|.|.+++.+|+|
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~g   79 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY-SVSSVLPGCAEPWNHGK   79 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC-CEEEECTTTHHHHHHTC
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE-EEEEEEEEeHHHcCCCC
Confidence            3445455444556789999999999943334  268999 4 3332210        00011 12446888888889999


Q ss_pred             EEEEEEEcCCCceEEEEEEE---EEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCcc--cc-
Q psy17058        250 KYTCIAENSAGKEVMNAYIH---VLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNL--ER-  321 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~~~~~l~---V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~--~~-  321 (471)
                      .|+|.+.|..+.......+.   +..+|.+.+.+.....+..|+.+.|.|.+.|. |. +.+.|+++|..+....  .. 
T Consensus        80 ~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  159 (214)
T 1ow0_A           80 TFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWA  159 (214)
T ss_dssp             EEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECC
T ss_pred             eEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecC
Confidence            99999998765433333332   34567666554332335679999999999995 54 4999999998875431  00 


Q ss_pred             cccC---ce------eEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        322 DELT---SR------AVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       322 ~~~~---~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ....   .+      +.|.|.....++.|.|+|.|.|....
T Consensus       160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            0111   22      33445444445689999999998654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.58  E-value=6.8e-15  Score=129.88  Aligned_cols=171  Identities=12%  Similarity=0.239  Sum_probs=104.6

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeE--EEEeCCCCCC----------------------CCCcc-------cCcEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATI--KWSKDNQEQL----------------------PPNMI-------AGETLI  143 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v--~W~~~~~~~~----------------------~~~~~-------~~~~L~  143 (471)
                      |..+.+.+|++|+|.|. .+.  ....+  .||+......                      ..+..       ....|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            44678999999999999 432  22344  9998521110                      01111       223699


Q ss_pred             EcCCCCCCCeEEEEEEEecCC-------ceeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCe
Q psy17058        144 INGITKADEGVYICSIQNAQG-------NVFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPT  213 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~-------~~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~  213 (471)
                      |.+++.+|+|.|.|.+.+..+       ........+.|.  ...+|.+....+. ..+..|+.++|.|.+....| ...
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEeccc-ccccCCCcEEEEEEEeeEeCCCeE
Confidence            999999999999999986521       112333455554  2344555533332 24567999999999955455 457


Q ss_pred             EEEEeCCCCCCcCCCc------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        214 QTWIRPDNDGKFGPDV------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       214 v~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      +.|++++..+......      ..+...+.|.|......| |.|+|.+.|..+.......|.+
T Consensus       166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            8999988643211110      111223568899988888 9999999998766665555443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.58  E-value=1.2e-14  Score=109.42  Aligned_cols=91  Identities=21%  Similarity=0.378  Sum_probs=74.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+... +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....    .........+|.|.+++.+|+|.|+|.|.
T Consensus         5 PP~i~~~-p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            5 PPKIEAL-PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEECCC-CSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeC-CCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            3444433 346789999999999999999999999999999886432    22234456789999999999999999999


Q ss_pred             cCCCceEEEEEEEEec
Q psy17058        349 NSAGTEEKVITVAVEH  364 (471)
Q Consensus       349 n~~g~~~~~~~l~V~~  364 (471)
                      |..|..+.++.|.|+.
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            9999999999999864

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.58  E-value=8.7e-15  Score=129.74  Aligned_cols=170  Identities=15%  Similarity=0.253  Sum_probs=107.8

Q ss_pred             CCceeecCCCcEEEEee-CCCC----CCeEEEEeCCCCCC-------------------------CCCcc-------cCc
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP----SATIKWSKDNQEQL-------------------------PPNMI-------AGE  140 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~~~~~-------------------------~~~~~-------~~~  140 (471)
                      |..+.+.+|++|+|.|. .+.+    ...+.||+......                         ..+..       ...
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            55788999999999999 4443    45899998522110                         00000       223


Q ss_pred             EEEEcCCCCCCCeEEEEEEEecCC------------ceeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEcc
Q psy17058        141 TLIINGITKADEGVYICSIQNAQG------------NVFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLE  206 (471)
Q Consensus       141 ~L~i~~v~~~D~G~Y~C~~~~~~~------------~~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~  206 (471)
                      .|.|.+++.+|+|.|.|.+.+..+            ........+.|.  ....|.+...++.. .+..|+.++|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCC-CC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCCh-hhccCCcEEEEEEEe
Confidence            699999999999999999986531            011223345553  23345555443322 345799999999995


Q ss_pred             CCCCC-CeEEEEeCCCCCCcCCCc------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        207 AGEPS-PTQTWIRPDNDGKFGPDV------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       207 ~~~p~-~~v~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      ...|. ..+.|++++..+......      ..+...+.|.|......| |.|+|.+.|..+.......|.
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            54564 469999988643211110      111223468899988888 999999999876655554443

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.58  E-value=3.2e-15  Score=132.03  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=92.2

Q ss_pred             eEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEE-ecCCCcEEEEEEEeecC----CCeEEEEeCCccCCCccc---
Q psy17058        249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS-VRPGEPLTLECEATGRP----MPTVSWVKYIAPFDRNLE---  320 (471)
Q Consensus       249 G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~g~p----~~~i~W~~~~~~~~~~~~---  320 (471)
                      |.|.|.++|..+.  .... .+..+|.+.+.++.... +..|+.+.|.|.+.|++    ..++.|+++|..+.....   
T Consensus         1 ~~~~~~~~~~~~~--c~~~-~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAP-ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC--CCcc-ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            6899999886553  1111 12335666666554444 56799999999999864    238999999988643211   


Q ss_pred             ----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE-ecCCCCCCCCCCCCCccccCCCcccCCCCCCCc
Q psy17058        321 ----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV-EHRPEYGPISPRPGADILPDGDEYYRPEPEEGE  395 (471)
Q Consensus       321 ----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V-~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  395 (471)
                          .......+.|.|.....+|.|.|+|.|.|..+.......+.. ...                              
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~------------------------------  127 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ------------------------------  127 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSC------------------------------
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCC------------------------------
Confidence                011223357888877788899999999998874322222221 111                              


Q ss_pred             eEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEeccc-CCc-eEEEecCCCCCCCc
Q psy17058        396 YVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPI-SIRWQPLQGYFPSH  456 (471)
Q Consensus       396 ~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~v~W~~~g~~l~~~  456 (471)
                                    ..+|.+.+.+.......|+.+.|.|.+.|+ |++ .|+|+|||+++...
T Consensus       128 --------------~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~  176 (240)
T 4acp_A          128 --------------PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY  176 (240)
T ss_dssp             --------------CBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             --------------CCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCc
Confidence                          136788776655444459999999999984 553 89999999987643

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.57  E-value=4.4e-16  Score=135.68  Aligned_cols=168  Identities=11%  Similarity=0.217  Sum_probs=108.1

Q ss_pred             CCcEE-EcCCceeecCCCcEEEEee-CCCCC---CeEEEEeCCCCCCCC-------Cc----ccCcEEEEcCCCCCCCeE
Q psy17058         91 ANEVQ-VTPRQQSAPEGSQVTIECK-SNDPS---ATIKWSKDNQEQLPP-------NM----IAGETLIINGITKADEGV  154 (471)
Q Consensus        91 ~~~v~-~~p~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~~~~~~~-------~~----~~~~~L~i~~v~~~D~G~  154 (471)
                      +|.+. ..|....+.+|++++|.|. .+.+.   +.|.| ++ +.....       ..    .....|.|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            44444 4477888999999999999 65543   68999 44 322110       00    123468888999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEE-eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCc---
Q psy17058        155 YICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDV---  229 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v-~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~---  229 (471)
                      |+|.+.|..+. ......+.+ .+..+|.+.+.+.....+..|+.++|.|.+....|. +.++|+|++..+......   
T Consensus        81 Y~C~~~~~~~~-~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  159 (214)
T 1ow0_A           81 FTCTAAYPESK-TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWA  159 (214)
T ss_dssp             EEEEECCSSCS-SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECC
T ss_pred             EEEEEecCCCC-CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecC
Confidence            99999987654 222334432 345667776655443345679999999999544564 599999998765433101   


Q ss_pred             eEEe---eec------eEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        230 EVYQ---ELG------VLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       230 ~~~~---~~~------~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      ....   .++      .|.|......+.|.|+|.+.|....
T Consensus       160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            0111   233      3444444445689999999987543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.57  E-value=1.4e-14  Score=146.02  Aligned_cols=161  Identities=17%  Similarity=0.285  Sum_probs=110.1

Q ss_pred             CceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCC-------------CCCcc--cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         99 RQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL-------------PPNMI--AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~-------------~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ....+.+|++++|.|.  .+.|.+.+.|++++....             ..+..  .+++|.|.+++.+|+|.|+|.+.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            4567899999999999  477888999999843210             11111  456899999999999999999999


Q ss_pred             cCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCe-EEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceE--------
Q psy17058        162 AQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR-ADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEV--------  231 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~-~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~--------  231 (471)
                      ..+........|.|..... ...+..... .+.+|+. +.|.|.+..+.|.+.++|++++..+..... ..+        
T Consensus       454 ~~~~~~~~~~~l~V~~~~~-~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPG-KPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCC-CCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             CCCceeEEEEEEEEEcCCC-CCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence            8877335556666653221 122222222 3445554 467999955579999999999877654322 111        


Q ss_pred             ----EeeeceEEEeccC-CCCCeEEEEEEEcCCCc
Q psy17058        232 ----YQELGVLRFNNIA-TGDEGKYTCIAENSAGK  261 (471)
Q Consensus       232 ----~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~  261 (471)
                          +...++|.|..++ .++.|.|+|.++|....
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                1113469999988 45588999999998643

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.56  E-value=1.1e-14  Score=129.60  Aligned_cols=173  Identities=16%  Similarity=0.247  Sum_probs=108.0

Q ss_pred             EcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~  145 (471)
                      ..|..+.+.+|++|+|.|. .+  .+...+.||+......                    ..+..       ...+|+|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3466788999999999999 43  3456899998622110                    11111       22369999


Q ss_pred             CCCCCCCeEEEEEEEecC---------------------CceeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEE
Q psy17058        146 GITKADEGVYICSIQNAQ---------------------GNVFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQ  202 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~  202 (471)
                      +++.+|+|.|.|.+.+..                     .........+.|.  ...+|.+...++.. .+..|+.++|.
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~~~L~  162 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSS-KSTSGGTAALG  162 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------CEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCc-cccCCCcEEEE
Confidence            999999999999998642                     1112223455554  22345555443322 34579999999


Q ss_pred             EEccCCCC-CCeEEEEeCCCCCCcCCCc------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        203 CVLEAGEP-SPTQTWIRPDNDGKFGPDV------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       203 C~~~~~~p-~~~v~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      |.+....| ...+.|++++..+......      ..+...+.|.|......| |.|+|.+.|..+.......|.+
T Consensus       163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            99955566 5689999988643211100      111223468888888888 9999999998766555544443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.56  E-value=3.4e-14  Score=134.80  Aligned_cols=171  Identities=12%  Similarity=0.174  Sum_probs=113.4

Q ss_pred             CeeeecCCCcee-EEcCCeEEEEEEccCCC---CC-CeEEEEeCCCCCCcCC-------CceEEeeeceEEEeccCCCCC
Q psy17058        181 PRIRIHPNASQT-FIVGDRADIQCVLEAGE---PS-PTQTWIRPDNDGKFGP-------DVEVYQELGVLRFNNIATGDE  248 (471)
Q Consensus       181 p~~~~~~~~~~~-v~~g~~~~L~C~~~~~~---p~-~~v~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~  248 (471)
                      |.+.+.+..... +..|+.++|.|.+. +.   |. ..|+|++++..+....       ..........|.|..++.+|+
T Consensus       167 p~v~~~~p~~~~~~~~g~~v~L~C~~~-g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~  245 (376)
T 2aty_A          167 SSVFIFPPKPKDVLTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNG  245 (376)
T ss_pred             cEEEEeCcCHHHceeeCCeeEEEEEEe-ccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCC
Confidence            334343333333 67899999999994 44   32 4799999986532111       001122244799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEE----EEEeCCceeeCCCccEEecCCCcEEEEEEEeec-C-CCeEEEEeCCccCCCcccc-
Q psy17058        249 GKYTCIAENSAGKEVMNAYI----HVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-P-MPTVSWVKYIAPFDRNLER-  321 (471)
Q Consensus       249 G~Y~C~~~~~~~~~~~~~~l----~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~-  321 (471)
                      |.|+|.+.+..+.......+    .+..+|.+.+.+.. .....|+.++|.|.+.|+ | .+.|+|++++..+...... 
T Consensus       246 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~  324 (376)
T 2aty_A          246 KEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQ  324 (376)
T ss_pred             CEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC-HHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCC
Confidence            99999999876643322233    44567777766543 234458999999999985 4 3589999999877432110 


Q ss_pred             ------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        322 ------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       322 ------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                            ......+.|.|.....+|.|.|+|.|.|....
T Consensus       325 ~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          325 PIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             ceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence                  11123456777777788899999999997654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.55  E-value=5.3e-14  Score=123.93  Aligned_cols=170  Identities=15%  Similarity=0.264  Sum_probs=108.7

Q ss_pred             CCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++|+|.|. .+  .....+.||+......                    ..+..       ....|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            44688999999999999 43  3456899998521110                    01111       1235999999


Q ss_pred             CCCCCeEEEEEEEecC-----Cc--eeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEE
Q psy17058        148 TKADEGVYICSIQNAQ-----GN--VFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWI  217 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~-----~~--~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~  217 (471)
                      +.+|+|.|.|.+.+..     +.  .......+.|.  ...+|.+....... .+.+|+.++|.|.+....| .+.+.| 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~~~~P~~~~v~W-  164 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW-  164 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCC-CCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCc-cccCCCCEEEEEEEEeEECCCEEEEE-
Confidence            9999999999998753     11  12233456664  23445555333322 3458999999999955456 468999 


Q ss_pred             eCCCCCCcCC--------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        218 RPDNDGKFGP--------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       218 ~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                       ++..+....        ....+...+.|.|.....+| |.|+|.+.|..+.......|.+.
T Consensus       165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence             554432110        00111223478999999999 99999999987666655555443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.55  E-value=3.4e-14  Score=118.49  Aligned_cols=160  Identities=16%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCC-eEEEEeCCCCCCC-CCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLP-PNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~-~v~W~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      +.+.|+...|.+|+++.|.|..+.+.+ .+.|.-..+.... ........|.|.+++. | |.|.|.+...... .....
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~-~~~~~   78 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ-STAKT   78 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCE-EEEEC
T ss_pred             eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCc-eEEEE
Confidence            678888899999999999999333344 4777532111111 1111235799999984 4 9999998654333 55555


Q ss_pred             EEEEeeccCCe-eeecCCCceeEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCC
Q psy17058        172 SIQVDKREMPR-IRIHPNASQTFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE  248 (471)
Q Consensus       172 ~l~v~~~~~p~-~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  248 (471)
                      .|.|.  .+|. +.+.+. ...+.+|+.++|.|.+.++.|..  .++|+|++..+...... ......+|.+.....+|.
T Consensus        79 ~l~V~--~~P~~v~i~~~-~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~-~~~~~~tl~~~~~reD~g  154 (185)
T 1iam_A           79 FLTVY--WTPERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHG  154 (185)
T ss_dssp             EEEEE--BCCSEEEECCC-CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-TTTEEEEEEEECCSSCSS
T ss_pred             EEEEe--CCCCCCEEccC-CccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCC-CccccEEEEEeceeccCC
Confidence            55555  4444 444443 33588999999999997667775  58999988764322100 011123567665555555


Q ss_pred             eEEEEEEEcCCC
Q psy17058        249 GKYTCIAENSAG  260 (471)
Q Consensus       249 G~Y~C~~~~~~~  260 (471)
                      +.|+|+|.|..+
T Consensus       155 ~~~sC~A~~~l~  166 (185)
T 1iam_A          155 AQFSCRTELDLR  166 (185)
T ss_dssp             CEEEEEEEEECG
T ss_pred             CeEEEEEEecCc
Confidence            699999998765

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.55  E-value=7.4e-13  Score=113.76  Aligned_cols=156  Identities=17%  Similarity=0.283  Sum_probs=113.0

Q ss_pred             eEEcCCeEEEEEEccCCCC---CCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        192 TFIVGDRADIQCVLEAGEP---SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      .+..|+.++|.|.+..+.|   +..++|+|++..+.-        ....|.|..+...++|.|+|.+.+..+....+..+
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~V   84 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEV   84 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCC
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeE
Confidence            5778999999999977877   558999999865221        24578899999999999999999977765444444


Q ss_pred             EEEeCC--ceeeCCCccEEecCCCcEEEEEEE--ee-cC-----CCeEEEEeCCccCCCcccccccCceeEEEEeecCCC
Q psy17058        269 HVLTLP--AVTITPSEYVSVRPGEPLTLECEA--TG-RP-----MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES  338 (471)
Q Consensus       269 ~V~~~p--~~~~~~~~~~~~~~g~~v~l~C~~--~g-~p-----~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  338 (471)
                      .|...+  .+.+..+....+..|..+.|.+.+  .| .|     ..+++|++++..+.         ....|++......
T Consensus        85 tVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is---------gAq~lT~sS~Tat  155 (304)
T 3shs_A           85 FLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID---------TTQDITIQEFTAD  155 (304)
T ss_dssp             EEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE---------SSSEEEECSCCGG
T ss_pred             EEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc---------CccccceeeEEec
Confidence            444433  333433344566778899999988  43 44     35999999986542         2336778888889


Q ss_pred             CCeEEEEEEEcCCCce--EEEEEEEEec
Q psy17058        339 DAGQYKCIGKNSAGTE--EKVITVAVEH  364 (471)
Q Consensus       339 d~G~Y~C~a~n~~g~~--~~~~~l~V~~  364 (471)
                      ++|.|+|.+.|..+..  +.++.|.+..
T Consensus       156 eaG~YtV~VTn~~~~c~~s~~~~i~~~~  183 (304)
T 3shs_A          156 KNGVYTVKVWGESEDSAASASTKIMLAT  183 (304)
T ss_dssp             GCEEEEEEEESSSGGGCEEEEEEEEECE
T ss_pred             CCeEEEEEEEcCCCCcccccceEEEEEc
Confidence            9999999999997733  4455555543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.54  E-value=2.9e-14  Score=106.00  Aligned_cols=90  Identities=28%  Similarity=0.423  Sum_probs=74.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+... .....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+..............|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~-~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   80 (93)
T 1wit_A            2 KPKILTA-SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCC-CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEcC-CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            4555333 34678999999999999999999999999999  77755433333455688999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy17058        351 AGTEEKVITVAVE  363 (471)
Q Consensus       351 ~g~~~~~~~l~V~  363 (471)
                      .|..+.++.|.|.
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T 1wit_A           81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEC
Confidence            9999998888873

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.54  E-value=1.2e-13  Score=121.69  Aligned_cols=171  Identities=15%  Similarity=0.197  Sum_probs=111.8

Q ss_pred             ceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|+.++|.|.+... .....+.|||......                   ...++.+...    ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            4568899999999998321 2346899997432110                   1223433332    22499999999


Q ss_pred             CCCeEEEEEEEcCC-----Cc---eEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEEeC
Q psy17058        246 GDEGKYTCIAENSA-----GK---EVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWVKY  311 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~-----~~---~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~~~  311 (471)
                      +|+|.|.|.+.+..     +.   ......|.|.    .+|.+...+. ...+.+|+.+.|.|.+.+ .| .+.+.|  +
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~  165 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW--N  165 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECC-CCCCCTTCEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCC-CccccCCCCEEEEEEEEeEECCCEEEEE--C
Confidence            99999999998753     11   1123456664    2344443222 223568999999999998 44 347999  5


Q ss_pred             CccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        312 IAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       312 ~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                      +..+.....        .......+.|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            555432111        1112234578999999999 999999999988887777776654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.54  E-value=5.4e-14  Score=125.22  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             ceeEEcCCeEEEEEEccC-CCCCCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~-~~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|+.++|.|.+.. ..+...+.|||......                   ...++.+..+    ...|.|.+++.
T Consensus         8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (248)
T 3u2s_H            8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV   87 (248)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence            456889999999999842 12346899998532210                   1233433322    23599999999


Q ss_pred             CCCeEEEEEEEcCC----------------------CceEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058        246 GDEGKYTCIAENSA----------------------GKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEAT  299 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~----------------------~~~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~  299 (471)
                      +|+|.|.|.+.+..                      ........|.|.    .+|.+...+. ...+..|+.+.|.|.+.
T Consensus        88 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~~~L~C~~~  166 (248)
T 3u2s_H           88 EDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVK  166 (248)
T ss_dssp             GGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECC-C------CEEEEEEEEE
T ss_pred             HHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCC-CccccCCCcEEEEEEEe
Confidence            99999999998641                      111122455665    3444443322 22445799999999999


Q ss_pred             e-cC-CCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        300 G-RP-MPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       300 g-~p-~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      + .| .+.+.|++++..+....      ........+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       167 ~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          167 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             eEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            8 55 34799999886543110      01112234578888888888 99999999998877766666554

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.53  E-value=8.9e-14  Score=124.63  Aligned_cols=169  Identities=15%  Similarity=0.272  Sum_probs=104.7

Q ss_pred             CCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++|+|.|. .+  .....+.|++......                    ..+..       ...+|+|.++
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL  109 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence            34678999999999999 43  2346899998522111                    11111       2235999999


Q ss_pred             CCCCCeEEEEEEEecCC---------c-eeeeeEEEEEe--eccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeE
Q psy17058        148 TKADEGVYICSIQNAQG---------N-VFQDYASIQVD--KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQ  214 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~---------~-~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v  214 (471)
                      +.+|+|.|.|.+.+..+         . .......+.|.  ...+|.+....+.. .+.+|+.++|.|.+....| ...+
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~~~~p~~~~v  188 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTV  188 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC------TTEEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCc-ccccCCcEEEEEEEEEEECCCeEE
Confidence            99999999999986431         1 12233456664  23445555333322 4568999999999955556 4689


Q ss_pred             EEEeCCCCCCcCC--------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        215 TWIRPDNDGKFGP--------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV  270 (471)
Q Consensus       215 ~W~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V  270 (471)
                      .|  ++..+....        ....+...+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            99  444422110        00111223468899999899 9999999998766555554443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.52  E-value=4e-14  Score=107.89  Aligned_cols=93  Identities=25%  Similarity=0.405  Sum_probs=76.3

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEc
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      +|.+... +.+..+.+|+.++|.|.+ .+.|.+.++|+|++..+....++.+..++  ..|.|.+++.+|+|.|+|.|.|
T Consensus        13 pP~f~~~-p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           13 PPCFLRF-PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EEEEEEC-CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeC-CCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            3444433 456788999999999999 78999999999999887777766665433  3699999999999999999999


Q ss_pred             CCCceEEEEEEEEEeCC
Q psy17058        258 SAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p  274 (471)
                      ..|..+.++.|.|..+|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999889999998765

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.52  E-value=4.3e-13  Score=111.83  Aligned_cols=154  Identities=16%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCce-EE-eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-VY-QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      ..+.+|+++.|.|.+ ....+..+.|.-.     +..... .. .....|.|.+++. | |.|.|.+..........+.|
T Consensus         9 ~~V~~G~Sv~l~Cs~-~c~~p~~~~~~t~-----l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l   80 (185)
T 1iam_A            9 VILPRGGSVLVTCST-SCDQPKLLGIETP-----LPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFL   80 (185)
T ss_dssp             EEEETTEEEEEEEEE-CSSSCSEEEEECS-----SCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEE
T ss_pred             cEEeCCCCEEEEEEc-cCCCCccceEEee-----CCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEE
Confidence            468899999999999 4333334777531     111100 00 1124588999974 3 99999997766677888999


Q ss_pred             EEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC--eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP--TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       269 ~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .|+.+|...........+.+|+.++|.|.+.| .|.+  .|+|+++++.+..... .....+.+|++.....+|...|+|
T Consensus        81 ~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~-~~~~~~~tl~~~~~reD~g~~~sC  159 (185)
T 1iam_A           81 TVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-VGEPAEVTTTVLVRRDHHGAQFSC  159 (185)
T ss_dssp             EEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-CTTTEEEEEEEECCSSCSSCEEEE
T ss_pred             EEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC-CCccccEEEEEeceeccCCCeEEE
Confidence            99988775444333346899999999999998 5554  5899999988754321 112334567777666666669999


Q ss_pred             EEEcCCCc
Q psy17058        346 IGKNSAGT  353 (471)
Q Consensus       346 ~a~n~~g~  353 (471)
                      +|.|..+.
T Consensus       160 ~A~~~l~~  167 (185)
T 1iam_A          160 RTELDLRP  167 (185)
T ss_dssp             EEEEECGG
T ss_pred             EEEecCcc
Confidence            99998763

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.52  E-value=2.8e-14  Score=109.41  Aligned_cols=100  Identities=22%  Similarity=0.313  Sum_probs=69.6

Q ss_pred             EEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       266 ~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      +.|.+..+|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+..............|.|.+++.+|+|.|+|
T Consensus         3 ~~v~~~~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   81 (108)
T 3kvq_A            3 LTVLERVAPTITGNL-ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC   81 (108)
T ss_dssp             --------CCCBSCC-CCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             eeECccCCCceecCC-CCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence            456666778776655 4578899999999999999999999999999887654333334456789999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEecCC
Q psy17058        346 IGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       346 ~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .|.|..|.....+.|.|..+|
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           82 QACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEC----CEEEEEEEEEEC--
T ss_pred             EEEeCCCceEEEEEEEEeCCC
Confidence            999999999999999998865

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.51  E-value=9.6e-14  Score=131.68  Aligned_cols=167  Identities=13%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             CcEEEc-CCcee-ecCCCcEEEEee-CCC---CC-CeEEEEeCCCCCCCCC------cc-----cCcEEEEcCCCCCCCe
Q psy17058         92 NEVQVT-PRQQS-APEGSQVTIECK-SND---PS-ATIKWSKDNQEQLPPN------MI-----AGETLIINGITKADEG  153 (471)
Q Consensus        92 ~~v~~~-p~~~~-v~~G~~v~l~C~-~~~---p~-~~v~W~~~~~~~~~~~------~~-----~~~~L~i~~v~~~D~G  153 (471)
                      |.+.+. |.... +.+|++++|.|. .+.   |. ..|.|+++++......      ..     ....|.|..++.+|+|
T Consensus       167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g  246 (376)
T 2aty_A          167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGK  246 (376)
T ss_pred             cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCC
Confidence            344343 43344 889999999999 554   32 4799999954321110      00     2347999999999999


Q ss_pred             EEEEEEEecCCceeeeeEEEEE--eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCCCce
Q psy17058        154 VYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGPDVE  230 (471)
Q Consensus       154 ~Y~C~~~~~~~~~~~~~~~l~v--~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~~~~  230 (471)
                      .|+|.+.+..+. ......+.+  .+..+|.+.+.+... ....|+.++|.|.+....| .+.|+|+|++..+.......
T Consensus       247 ~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~  324 (376)
T 2aty_A          247 EFKCRVNSAAFP-APIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQ  324 (376)
T ss_pred             EEEEEEecCCCC-CceEEEEcCCCCCCcCCeEEeeCCCH-HHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCC
Confidence            999999987654 222233332  445677777665543 3346899999999954455 56999999987643211111


Q ss_pred             E-------EeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        231 V-------YQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       231 ~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      .       +...+.|.|.....+|.|.|+|.|.|...
T Consensus       325 ~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          325 PIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             ceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            0       11134577777777889999999998754

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=1.4e-13  Score=118.87  Aligned_cols=161  Identities=14%  Similarity=0.172  Sum_probs=99.5

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC--CC----------cCCCceEEee-----eceEEEeccCCCCCeE
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND--GK----------FGPDVEVYQE-----LGVLRFNNIATGDEGK  250 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~--~~----------~~~~~~~~~~-----~~~l~i~~~~~~d~G~  250 (471)
                      +....+.+|++++|.|.+. +.+ ..+.|+|....  ..          ...++.+..+     ...|.|.+++.+|+|.
T Consensus         8 p~~v~v~~G~~v~L~C~~~-~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            8 PSALSLHEGTDSALRCNFT-TTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             CSEEEEETTCCEEEEEEES-SCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             CCeEEEccCCcEEEEEEEe-CCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            3456788999999999984 333 48999986432  11          1234444321     2479999999999999


Q ss_pred             EEEEEEcCCC---------c--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCC
Q psy17058        251 YTCIAENSAG---------K--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDR  317 (471)
Q Consensus       251 Y~C~~~~~~~---------~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~  317 (471)
                      |.|.+.+..+         .  ......|.|.........|  .+.+..+ .+.|.|.+.+. |. +.+.|+++ ..+..
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P--~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~  161 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP--SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVE  161 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC--EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEE
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC--eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccC
Confidence            9999987632         1  1123567776432111111  2222222 37999999985 54 69999998 65542


Q ss_pred             cccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCce
Q psy17058        318 NLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       318 ~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..........+.+.+.... .+|.|.|+|.|.|..+..
T Consensus       162 ~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          162 FDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             CCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             CccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence            2111111222344444444 367899999999987643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.6e-14  Score=108.54  Aligned_cols=95  Identities=22%  Similarity=0.352  Sum_probs=76.9

Q ss_pred             eCCceeeC--CCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCC-cccccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       272 ~~p~~~~~--~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      .+|.+.+.  ......+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ............|.|.+++.+|+|.|+|.|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   99 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ   99 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence            35555432  33456889999999999999999999999999988862 2222233456779999999999999999999


Q ss_pred             cCCCceEEEEEEEEecCC
Q psy17058        349 NSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       349 n~~g~~~~~~~l~V~~~p  366 (471)
                      |..|..+..+.|.|.++|
T Consensus       100 N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A          100 IENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             CSSCEECCEEEEEEECCC
T ss_pred             eCCCeEEEEEEEEEEcCC
Confidence            999999999999998765

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.50  E-value=3.4e-14  Score=106.95  Aligned_cols=86  Identities=24%  Similarity=0.438  Sum_probs=70.6

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ..||.|...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....         ...+|.|.+++.+|+|.|+|.
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEET-TEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC-ceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence            34788888889999999999999999 8899999999999 655543221         335899999999999999999


Q ss_pred             EEecCCceeeeeEEEEEe
Q psy17058        159 IQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~  176 (471)
                      |.|..|. ....+.|.|.
T Consensus        82 a~N~~G~-~~~~~~l~V~   98 (100)
T 3knb_A           82 LGNEFGS-DSATVNIHIR   98 (100)
T ss_dssp             EEETTEE-EEEEEEEEEE
T ss_pred             EEECCCE-EEEEEEEEEE
Confidence            9999887 6666666664

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=3e-13  Score=104.74  Aligned_cols=94  Identities=22%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....  ..........|.|.+++.+|+|.|+|.|.|.
T Consensus         7 pp~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCEESC-CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCEEEe-CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            444443 3456789999999999999999999999999998876432  2222334678999999999999999999999


Q ss_pred             CCceEEEEEEEEecCCC
Q psy17058        351 AGTEEKVITVAVEHRPE  367 (471)
Q Consensus       351 ~g~~~~~~~l~V~~~p~  367 (471)
                      .|..+..+.|.|...|.
T Consensus        86 ~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SCEEECCEEEEEECSCS
T ss_pred             CCcEEEEEEEEEECCCC
Confidence            99999999999998763

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.50  E-value=3.2e-12  Score=118.80  Aligned_cols=173  Identities=17%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             CCCceeEEcCCeEEEEEEccCCC-------------CCCeEEEEeCCCC-------------C---CcCCC-ce------
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGE-------------PSPTQTWIRPDND-------------G---KFGPD-VE------  230 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~-------------p~~~v~W~~~~~~-------------~---~~~~~-~~------  230 (471)
                      +.....+..|++++|.|......             ....+.||+....             .   ....+ ..      
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            34456788999999999873221             1347999864211             0   00011 11      


Q ss_pred             -----EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCC-cEEEEEEEee-cCC
Q psy17058        231 -----VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE-PLTLECEATG-RPM  303 (471)
Q Consensus       231 -----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~g-~p~  303 (471)
                           +...+..|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+.+.+.....+..|+ .+.|.|.+.| +|.
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~  323 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPS  323 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSS
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCC
Confidence                 122356899999999999999999998877777788899999998877654322245676 8999999998 566


Q ss_pred             --CeEEEE-eCCcc---CCCc-------cc---ccccCceeEEEEeecCC-CCCeEEEEEEEcCC---CceEEEEE
Q psy17058        304 --PTVSWV-KYIAP---FDRN-------LE---RDELTSRAVYTIASVRE-SDAGQYKCIGKNSA---GTEEKVIT  359 (471)
Q Consensus       304 --~~i~W~-~~~~~---~~~~-------~~---~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~---g~~~~~~~  359 (471)
                        +.+.|. +++..   +...       ..   .......+.|.+...+. ++.+.|+|.+.|..   +..+.+++
T Consensus       324 ~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVt  399 (401)
T 3f8u_B          324 GGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVT  399 (401)
T ss_dssp             TTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred             CCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence              689995 76521   1100       00   00112233455554432 34459999999986   44444444

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=110.68  Aligned_cols=93  Identities=25%  Similarity=0.390  Sum_probs=75.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|+|.+.+.|++++..+............++|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 pP~i~~~p-~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A            8 PPVIRQGP-VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             SCCCSBCC-CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CCEEEcCC-CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            45554444 45788999999999999999999999999998876432222233456899999999999999999999999


Q ss_pred             ceEEEEEEEEecCC
Q psy17058        353 TEEKVITVAVEHRP  366 (471)
Q Consensus       353 ~~~~~~~l~V~~~p  366 (471)
                      .....+.|.|...+
T Consensus        87 ~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           87 EATWSAYIEVQEFG  100 (118)
T ss_dssp             EEEEECCEEEECCS
T ss_pred             cEEEEEEEEEEeCC
Confidence            99999999998765

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=2.3e-13  Score=117.56  Aligned_cols=160  Identities=19%  Similarity=0.311  Sum_probs=98.1

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCC-CC------------CCCcc--------cCcEEEEcCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE-QL------------PPNMI--------AGETLIINGITKAD  151 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~-~~------------~~~~~--------~~~~L~i~~v~~~D  151 (471)
                      +...|..+.+.+|++++|.|. .+.. ..+.|+|.... ..            ..+..        ....|+|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            556677889999999999999 4433 47999996321 11            11111        12489999999999


Q ss_pred             CeEEEEEEEecCC---------c-eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCC
Q psy17058        152 EGVYICSIQNAQG---------N-VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPD  220 (471)
Q Consensus       152 ~G~Y~C~~~~~~~---------~-~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~  220 (471)
                      +|.|.|.+.+..+         . .......|.|.....+  . .++ ...+..+ .++|.|.+....|. +.++|+++ 
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~--~-~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-  156 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP--P-AKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-  156 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC--C-CCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC--C-CCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-
Confidence            9999999987632         1 1123355666531100  0 011 1122222 37999999555665 79999998 


Q ss_pred             CCCCcCCCceEEeeeceEEEeccCC-CCCeEEEEEEEcCCC
Q psy17058        221 NDGKFGPDVEVYQELGVLRFNNIAT-GDEGKYTCIAENSAG  260 (471)
Q Consensus       221 ~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~  260 (471)
                      ..+...........++.+.+..... .|.|.|+|.+.|..+
T Consensus       157 ~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          157 KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            5433221111112234555544444 678999999998764

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.49  E-value=9.4e-13  Score=136.34  Aligned_cols=160  Identities=16%  Similarity=0.270  Sum_probs=113.1

Q ss_pred             CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEecc-CCCCCeEEEEEEEcCCCceEEEEEEEEE---
Q psy17058        196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNI-ATGDEGKYTCIAENSAGKEVMNAYIHVL---  271 (471)
Q Consensus       196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~l~V~---  271 (471)
                      +..+.|.|.+ .+.|.+.+.|.++|..+....       ...+.|..+ .....+.|.|.+.+..|..... .+.+.   
T Consensus        91 ~g~l~v~c~~-~g~P~p~i~W~k~g~~~~~~~-------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~  161 (731)
T 2v5y_A           91 PGLLNVYVKV-NNGPLGNPIWNISGDPTRTWN-------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHP  161 (731)
T ss_dssp             SEEEEEEEEE-TTCCCCSEEEEECCCCCSSCE-------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSC
T ss_pred             cceEEEEEec-CCCCccceeEEEeCCcCCcee-------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeecc
Confidence            4589999999 788999999999998742211       234555544 2233478888777766653321 12222   


Q ss_pred             --eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEE-EE--eCCccCCCccc--ccccCceeEEEEeecCCCCCeEEE
Q psy17058        272 --TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS-WV--KYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       272 --~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~-W~--~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                        .+|.+. .+ .+..+.+|+++.|.|.+.|.|.|.+. |+  +++..+.....  .......++|.|.++...|+|.|+
T Consensus       162 ~~~~p~~~-~~-~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~  239 (731)
T 2v5y_A          162 CTRTPHFL-RI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR  239 (731)
T ss_dssp             CSSSCEEC-CC-CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEE
T ss_pred             cccccccc-cc-cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEE
Confidence              244443 33 35789999999999999999999887 88  67766543211  111223579999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEEecCC
Q psy17058        345 CIGKNSAGT-EEKVITVAVEHRP  366 (471)
Q Consensus       345 C~a~n~~g~-~~~~~~l~V~~~p  366 (471)
                      |.|.|..|. .+..+.|.|..+|
T Consensus       240 c~A~n~~G~~~s~~~~l~V~~~P  262 (731)
T 2v5y_A          240 CMIRTEGGVGISNYAELVVKEPP  262 (731)
T ss_dssp             EEEEETTEEEECCCEEEEEECCC
T ss_pred             EEEECCCCCcceeeEEEEEecCC
Confidence            999999998 6667888888765

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.49  E-value=1.6e-13  Score=120.37  Aligned_cols=164  Identities=17%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             CCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~~v  147 (471)
                      |..+.+.+|++|+|.|. .+  .+...+.||+......                    ..+..       ...+|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            44688999999999999 43  2356899998521110                    01111       2245999999


Q ss_pred             CCCCCeEEEEEEEecCC--------ceeeeeEEEEEee--ccCCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEE
Q psy17058        148 TKADEGVYICSIQNAQG--------NVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTW  216 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~--------~~~~~~~~l~v~~--~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W  216 (471)
                      +.+|+|.|.|.+.+..+        ........+.|..  ..+|.+...++ ...+.+|+.++|.|.+....| .+.+.|
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEE-EECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecC-cccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            99999999999976421        0012233455532  33455543222 112347999999999965556 568999


Q ss_pred             EeCCCCCCcCC--------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        217 IRPDNDGKFGP--------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       217 ~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                        ++..+....        ....+...+.|.|......| |.|+|.+.|..+.....
T Consensus       166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence              443322110        00111123468899998889 99999999987654433

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=116.01  Aligned_cols=165  Identities=14%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             CCcEEEcCCceeecCCCcEEEEeeCCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      +..+.+.|+...|.+|+++.|.|..+-+.+ .+.|.-.-+............+.|.+++ +|.+.|.|.+...... ...
T Consensus         2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~-~~~   79 (196)
T 3bn3_B            2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRT-LQA   79 (196)
T ss_dssp             CSCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEE-EEE
T ss_pred             CcEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCc-eEE
Confidence            457888999999999999999999333334 6777443111111111122358999999 8888899997664322 444


Q ss_pred             eEEEEEeeccCCe-eeecCCCceeEEcCCeEEEEEEccCCCCCCe--EEEEeCCCCCCcCC----CceEEeeeceEEEec
Q psy17058        170 YASIQVDKREMPR-IRIHPNASQTFIVGDRADIQCVLEAGEPSPT--QTWIRPDNDGKFGP----DVEVYQELGVLRFNN  242 (471)
Q Consensus       170 ~~~l~v~~~~~p~-~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~--v~W~~~~~~~~~~~----~~~~~~~~~~l~i~~  242 (471)
                      ...|.|.  .+|. +.+.+. ...+.+|+.++|.|.+.++.|...  ++|+|++..+....    ..........+.+..
T Consensus        80 ~v~l~Vy--~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~  156 (196)
T 3bn3_B           80 RGLIRTF--QRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLA  156 (196)
T ss_dssp             ECEEEEE--BCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEEC
T ss_pred             EEEEEEe--cCCCcCEEccC-CccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEee
Confidence            4445554  4444 333333 224789999999999977777754  89999887643211    001111124466665


Q ss_pred             cCCCCCeEEEEEEEcCCC
Q psy17058        243 IATGDEGKYTCIAENSAG  260 (471)
Q Consensus       243 ~~~~d~G~Y~C~~~~~~~  260 (471)
                      ...+|...|+|+|.+..+
T Consensus       157 ~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          157 RREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CGGGTTCEEEEEEEEECG
T ss_pred             eeccCCCeEEEEEEccCC
Confidence            555566699999998655

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=104.09  Aligned_cols=92  Identities=26%  Similarity=0.488  Sum_probs=75.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+.............+|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 ~P~i~~~p-~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (100)
T 2edj_A            8 PPIILQGP-ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG   86 (100)
T ss_dssp             SCEEEECC-CCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred             CCEEEeCc-CCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCC
Confidence            45555444 45678899999999999999999999999998776332222334456899999999999999999999999


Q ss_pred             ceEEEEEEEEecC
Q psy17058        353 TEEKVITVAVEHR  365 (471)
Q Consensus       353 ~~~~~~~l~V~~~  365 (471)
                      ..+..+.|.|.++
T Consensus        87 ~~~~~~~l~V~~~   99 (100)
T 2edj_A           87 ETSWSAVLDVTES   99 (100)
T ss_dssp             CCBCCEEEEEESC
T ss_pred             CEEEEEEEEEecC
Confidence            9999999999875

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=4.5e-13  Score=100.77  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc---ccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD---ELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+.......   ......+|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            5 APKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecC-cceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            34444443 35688999999999999999999999999998876432211   134566899999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy17058        350 SAGTEEKVITVAVEH  364 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~  364 (471)
                      ..|....++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999999998865

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.47  E-value=6.3e-13  Score=119.04  Aligned_cols=170  Identities=15%  Similarity=0.196  Sum_probs=106.7

Q ss_pred             eeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccCCC
Q psy17058        191 QTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIATG  246 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~~~  246 (471)
                      ..+.+|++++|.|.+... .....+.|+|......                   ...++.+..+    ...|.|.+++.+
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            467899999999998321 2346899998532110                   1233433322    224999999999


Q ss_pred             CCeEEEEEEEcCCC---------c--eEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEE
Q psy17058        247 DEGKYTCIAENSAG---------K--EVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWV  309 (471)
Q Consensus       247 d~G~Y~C~~~~~~~---------~--~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~  309 (471)
                      |+|.|.|.+.+..+         .  ......|.|.    .+|.+..... ...+.+|+.+.|.|.+.+ .| .+.+.| 
T Consensus       113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~~~~p~~~~v~W-  190 (256)
T 3sob_H          113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW-  190 (256)
T ss_dssp             GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC-C-----TTEEEEEEEEEEEBSSCCEEEE-
T ss_pred             cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC-CcccccCCcEEEEEEEEEEECCCeEEEE-
Confidence            99999999987431         1  1222355654    2344443222 224568999999999988 55 347999 


Q ss_pred             eCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        310 KYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       310 ~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                       ++..+.....        .......+.|.|.....+| |.|+|.|.|..+.......|.+..
T Consensus       191 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~  251 (256)
T 3sob_H          191 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS  251 (256)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred             -CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence             5554432110        0112234578899999999 999999999988877776666553

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.47  E-value=3.3e-13  Score=101.57  Aligned_cols=91  Identities=23%  Similarity=0.402  Sum_probs=73.1

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....   ........+|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            5 PPTFKVSL-MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEECC-CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEcC-CceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            44454444 346889999999999999999999999999988764322   11223345899999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy17058        350 SAGTEEKVITVAVEH  364 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~  364 (471)
                      ..|..+.++.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999999999998875

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=104.20  Aligned_cols=93  Identities=16%  Similarity=0.264  Sum_probs=75.6

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      .+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  ........+|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            7 HAPRITLRM-RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             EEEEEEECC-CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCC-cceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            345555444 456889999999999999999999999999988764322  22233456899999999999999999999


Q ss_pred             CCCceEEEEEEEEecC
Q psy17058        350 SAGTEEKVITVAVEHR  365 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~~  365 (471)
                      ..|..+..+.|.|...
T Consensus        86 ~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           86 YKGEASDYATLDVTGG  101 (103)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCcEEEEEEEEEECC
Confidence            9999999999999764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2e-13  Score=102.77  Aligned_cols=90  Identities=22%  Similarity=0.411  Sum_probs=74.0

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      .+|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+..... ........|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   87 (99)
T 2yr3_A           10 VAPSFSSVL-KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHIQDALPEDHGTYTCLAENAL   87 (99)
T ss_dssp             EEEEEEECC-CCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC-EEETTEEEEEECSCCTTCCBCEEEEEECSS
T ss_pred             cCCceeecC-CCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce-EeeCCeEEEEECCCChhhCEEEEEEEEECC
Confidence            455555554 356889999999999999999999999999988764332 233456789999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy17058        352 GTEEKVITVAVE  363 (471)
Q Consensus       352 g~~~~~~~l~V~  363 (471)
                      |..+.++.|.|+
T Consensus        88 g~~~~~~~l~V~   99 (99)
T 2yr3_A           88 GQVSCSAWVTVH   99 (99)
T ss_dssp             CEEEEECCEEEC
T ss_pred             CeEEEEEEEEEC
Confidence            999888888774

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.46  E-value=7.1e-13  Score=116.30  Aligned_cols=167  Identities=19%  Similarity=0.213  Sum_probs=105.1

Q ss_pred             ceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCC-------------------CcCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDG-------------------KFGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~-------------------~~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|+.++|.|.+... .+...+.|||.....                   ....++.+..+    ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            4568899999999998321 234689999853210                   01234444322    23499999999


Q ss_pred             CCCeEEEEEEEcCCC-------c--eEEEEEEEEE----eCCceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEEe
Q psy17058        246 GDEGKYTCIAENSAG-------K--EVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWVK  310 (471)
Q Consensus       246 ~d~G~Y~C~~~~~~~-------~--~~~~~~l~V~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~~  310 (471)
                      +|+|.|.|.+.+..+       .  ......|.|.    .+|.+...+. ...+.+|+.+.|.|.+.+ .| .+.+.|  
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~v~W--  165 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW--  165 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEE-EECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecC-cccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence            999999999976421       0  0112345553    2344432211 223568999999999988 45 358999  


Q ss_pred             CCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        311 YIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       311 ~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ++..+.....        .......+.|.|.....+| |.|+|.|.|..+.......|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          166 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence            4444321110        1112234578999999889 99999999998876655443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.45  E-value=1.9e-13  Score=103.03  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=74.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+.....   ........+|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~P~~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            5 PPRFIQVP-ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEECCCCC-CCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEeCC-CCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            45454443 456889999999999999999999999999987754321   11123346899999999999999999999


Q ss_pred             CCCceEEEEEEEEecC
Q psy17058        350 SAGTEEKVITVAVEHR  365 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~~  365 (471)
                      ..|..+.++.|.|..+
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999999999999764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.44  E-value=4.8e-13  Score=103.77  Aligned_cols=93  Identities=27%  Similarity=0.417  Sum_probs=75.3

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-ccc---ccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-ERD---ELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+.... ...   ......+|.|.+++.+|+|.|+|.|.
T Consensus        15 ~p~f~~~p-~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           15 APMFIYKP-QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             CCCBSSCC-CCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCeEEeCC-CcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            45555444 45789999999999999999999999999998876321 111   11133489999999999999999999


Q ss_pred             cCCCceEEEEEEEEecCC
Q psy17058        349 NSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       349 n~~g~~~~~~~l~V~~~p  366 (471)
                      |..|..+..+.|.|..+|
T Consensus        94 N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             ETTEEEEEEEEEEEECCS
T ss_pred             cCCCeEEEEEEEEEeCCC
Confidence            999999999999999876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.43  E-value=4.9e-13  Score=101.27  Aligned_cols=81  Identities=19%  Similarity=0.307  Sum_probs=67.4

Q ss_pred             ecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ...+..+.|.|.+.|+|.|.++|++++..+......       ......+.|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        13 ~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            346888999999999999999999999887644221       0122345699999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy17058        359 TVAVEHRP  366 (471)
Q Consensus       359 ~l~V~~~p  366 (471)
                      .|.|...|
T Consensus        93 ~l~V~~~P  100 (103)
T 1wwb_X           93 SAHFMGWP  100 (103)
T ss_dssp             EECCSCCC
T ss_pred             EEEECCCC
Confidence            99998876

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.42  E-value=1.2e-12  Score=98.00  Aligned_cols=86  Identities=14%  Similarity=0.221  Sum_probs=71.5

Q ss_pred             CCccEEecCCCcEEEEEEEeec-CCCeEEEEeCCccCCCcccc--cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        280 PSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLER--DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       280 ~~~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ++....+.+|+++.|.|.+.|. |.+.+.|++++..+......  ........|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS   86 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeE
Confidence            3456789999999999999997 88999999999887643221  12334558999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy17058        357 VITVAVEHR  365 (471)
Q Consensus       357 ~~~l~V~~~  365 (471)
                      ++.|.|.+.
T Consensus        87 ~~~l~V~~~   95 (97)
T 2bk8_A           87 YAELFVKGV   95 (97)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEEEec
Confidence            999998764

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=116.63  Aligned_cols=172  Identities=17%  Similarity=0.308  Sum_probs=105.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETL  142 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L  142 (471)
                      .+... ..+.+.+|++|+|.|. .+  .....+.||+......                    ..+..       ...+|
T Consensus        26 ~v~q~-~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL  104 (267)
T 3u1s_H           26 QLVQS-GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYM  104 (267)
T ss_dssp             CEEEC-CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEE
T ss_pred             eEEee-CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEE
Confidence            44443 4678999999999999 33  3457899998622110                    01111       23469


Q ss_pred             EEcCCCCCCCeEEEEEEEe-------cC------------C-c----eeeeeEEEEEe--eccCCeeeecCCCceeEEcC
Q psy17058        143 IINGITKADEGVYICSIQN-------AQ------------G-N----VFQDYASIQVD--KREMPRIRIHPNASQTFIVG  196 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~--~~~~p~~~~~~~~~~~v~~g  196 (471)
                      +|.+++.+|+|.|.|.+.+       ..            . .    .......+.|.  ...+|.+....+.. ...+|
T Consensus       105 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g  183 (267)
T 3u1s_H          105 ELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSS-KSTSG  183 (267)
T ss_dssp             EECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCG-GGEET
T ss_pred             EECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCc-ccCCC
Confidence            9999999999999999862       00            0 0    01123445553  23345555333322 23579


Q ss_pred             CeEEEEEEccCCCC-CCeEEEEeCCCCCCcCC--------CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        197 DRADIQCVLEAGEP-SPTQTWIRPDNDGKFGP--------DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       197 ~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      +.++|.|.+....| .+.++|  ++..+....        ....+...+.|.|.....+| +.|+|.+.|..........
T Consensus       184 ~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  260 (267)
T 3u1s_H          184 GTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  260 (267)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEE
T ss_pred             CcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEE
Confidence            99999999955566 578999  554432110        00111223468888888888 9999999997665544444


Q ss_pred             EE
Q psy17058        268 IH  269 (471)
Q Consensus       268 l~  269 (471)
                      +.
T Consensus       261 ~~  262 (267)
T 3u1s_H          261 VE  262 (267)
T ss_dssp             CC
T ss_pred             cc
Confidence            33

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.42  E-value=5.4e-13  Score=109.33  Aligned_cols=101  Identities=25%  Similarity=0.319  Sum_probs=78.9

Q ss_pred             EEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccc---cCceeEEEEeecCCCCCeEEE
Q psy17058        268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE---LTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       268 l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      +.+..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+........   ......|.|.+++.+|+|.|+
T Consensus        36 ~~v~~~P~~~~~~~-~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  114 (154)
T 1fhg_A           36 EKPHVKPYFTKTIL-DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT  114 (154)
T ss_dssp             CCCCEEEEEEECCC-CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred             ccCCCCCeEEccCC-cEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence            34445666665543 57889999999999999999999999999988764322111   233579999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEecCCCCC
Q psy17058        345 CIGKNSAGTEEKVITVAVEHRPEYG  369 (471)
Q Consensus       345 C~a~n~~g~~~~~~~l~V~~~p~~~  369 (471)
                      |.|.|..|.....+.|.|...|...
T Consensus       115 C~a~N~~G~~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          115 CKAVNSLGEATCTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEETTEEEEEEEEEEEECC----
T ss_pred             EEEEECCCeEEEEEEEEEeCcCcCC
Confidence            9999999999999999999887543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=8e-13  Score=102.98  Aligned_cols=91  Identities=22%  Similarity=0.360  Sum_probs=73.8

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-c----ccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-M----IAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-~----~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ..+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+... .    ..++.|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKD-GVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEES-SSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEEC-CEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            45788888889999999999999999 8889999999998 5555421 1    15678999999999999999999999


Q ss_pred             CCceeeeeEEEEEeeccCC
Q psy17058        163 QGNVFQDYASIQVDKREMP  181 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~~~~p  181 (471)
                      .|. ....+.|.|.....|
T Consensus        85 ~g~-~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           85 SGE-ATWSAYIEVQEFGVP  102 (118)
T ss_dssp             SCE-EEEECCEEEECCSCC
T ss_pred             CCc-EEEEEEEEEEeCCCC
Confidence            887 666666777644333

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.41  E-value=1.9e-12  Score=113.40  Aligned_cols=156  Identities=16%  Similarity=0.291  Sum_probs=97.7

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC--------------CCCcc-------cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL--------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~--------------~~~~~-------~~~~L~i~~v~  148 (471)
                      +...|..+.+.+|++++|.|. .+.+  ...+.||+... ...              ..+..       ....|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            555677889999999999999 5333  46799998631 111              11111       22489999999


Q ss_pred             CCCCeEEEEEEEecCC------c-eeeeeEEEEEeec----cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCC-eEEE
Q psy17058        149 KADEGVYICSIQNAQG------N-VFQDYASIQVDKR----EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTW  216 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~------~-~~~~~~~l~v~~~----~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W  216 (471)
                      .+|+|.|.|.+.+...      . .......|.|...    .+|.+.+        .. ..++|.|.+....|.+ .++|
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~--------~~-~~~~L~C~~~g~~P~~i~v~W  154 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFV--------MK-NGTNVACLVKEFYPKDIRINL  154 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEE--------EE-ETTEEEEEEESCBSSCCEEEE
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEE--------cC-CCCeEEEEEEEEeCCCEEEEE
Confidence            9999999999987531      1 1223345666521    1233222        11 2358999996556664 9999


Q ss_pred             EeCCCCCCcCCCceEEeeeceEEEeccCC-CCCeEEEEEEEcCC
Q psy17058        217 IRPDNDGKFGPDVEVYQELGVLRFNNIAT-GDEGKYTCIAENSA  259 (471)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~  259 (471)
                      +++ ..+...........++.+.+..... .+.|.|+|.+.|..
T Consensus       155 ~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~  197 (229)
T 1hxm_A          155 VSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN  197 (229)
T ss_dssp             ECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             ecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCC
Confidence            998 6533221111112244555544433 68899999999875

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.41  E-value=5.3e-13  Score=99.08  Aligned_cols=84  Identities=18%  Similarity=0.372  Sum_probs=67.9

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQLPPNMI-----AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      +|.|...+....+.+|+.+.|.|. .+.|.+.+.|++++ +..+.....     ....|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            567766778889999999999999 89999999999994 155544322     34689999999999999999999998


Q ss_pred             CceeeeeEEEEE
Q psy17058        164 GNVFQDYASIQV  175 (471)
Q Consensus       164 ~~~~~~~~~l~v  175 (471)
                      |. ......|.|
T Consensus        82 G~-~~~~~~l~V   92 (93)
T 1wit_A           82 GE-DEAIFEVIV   92 (93)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             Ce-EEEEEEEEE
Confidence            86 555555554

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.1e-12  Score=101.61  Aligned_cols=89  Identities=18%  Similarity=0.245  Sum_probs=68.2

Q ss_pred             eeeCCCccEEecCCCcEEEEEEEeec---CCCeEEEEeCCccC-----CCcccc------cccCceeEEEEeecCCCCCe
Q psy17058        276 VTITPSEYVSVRPGEPLTLECEATGR---PMPTVSWVKYIAPF-----DRNLER------DELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       276 ~~~~~~~~~~~~~g~~v~l~C~~~g~---p~~~i~W~~~~~~~-----~~~~~~------~~~~~~~~l~i~~~~~~d~G  341 (471)
                      +...| ..+.+.+|++++|.|.+.|.   |.|.|.|+|+....     ......      ........|.|.+++.+|+|
T Consensus        10 F~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG   88 (126)
T 2dav_A           10 FIEKP-QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   88 (126)
T ss_dssp             CCSCC-CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEEcC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCE
Confidence            33444 56789999999999999874   88999999964211     011110      11113588999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEecC
Q psy17058        342 QYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       342 ~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      .|+|+|.|..|..+.++.|.|...
T Consensus        89 ~Y~Cevsn~~g~~~~~~~L~V~~~  112 (126)
T 2dav_A           89 NYRCEVTYKDKFDSCSFDLEVHES  112 (126)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEec
Confidence            999999999999999999999983

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.41  E-value=5.6e-12  Score=117.18  Aligned_cols=160  Identities=14%  Similarity=0.263  Sum_probs=100.9

Q ss_pred             cCCceeecCCCcEEEEee-CCCC--------------CCeEEEEeCC------------CCC-----CC-CC--------
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP--------------SATIKWSKDN------------QEQ-----LP-PN--------  135 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p--------------~~~v~W~~~~------------~~~-----~~-~~--------  135 (471)
                      ++..+.+.+|++++|.|. ...+              ...+.||+..            +..     .. ..        
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            467889999999999998 3222              3579999751            110     00 00        


Q ss_pred             ------cccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCC-eEEEEEEccCC
Q psy17058        136 ------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD-RADIQCVLEAG  208 (471)
Q Consensus       136 ------~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~-~~~L~C~~~~~  208 (471)
                            ...+.+|+|.+++.+|+|.|.|.+.+..+. ..  ..+.+.+..+|.+.+.+.....+..|+ .++|.|.+...
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~--~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf  320 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQ--VTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF  320 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEE-EE--EEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccc-ee--EEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence                  013568999999999999999999886544 33  344444456788777654332244676 89999999666


Q ss_pred             CCC--CeEEEE-eCCCC---CCcCC-----Cce-----EEeeeceEEEeccCC-CCCeEEEEEEEcCC
Q psy17058        209 EPS--PTQTWI-RPDND---GKFGP-----DVE-----VYQELGVLRFNNIAT-GDEGKYTCIAENSA  259 (471)
Q Consensus       209 ~p~--~~v~W~-~~~~~---~~~~~-----~~~-----~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~  259 (471)
                      .|.  +.++|+ +++..   +....     ...     .+...+.|.+...+. .+.+.|+|.+.|..
T Consensus       321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            676  799995 77521   11110     000     011123455554432 34569999999875

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.40  E-value=8.8e-13  Score=100.95  Aligned_cols=101  Identities=22%  Similarity=0.381  Sum_probs=69.5

Q ss_pred             EEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEE
Q psy17058        173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       173 l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  252 (471)
                      +.|.+..+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+.......+....+.|.|.+++.+|+|.|+
T Consensus         3 ~~v~~~~~P~~~~~~-~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   80 (108)
T 3kvq_A            3 LTVLERVAPTITGNL-ENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT   80 (108)
T ss_dssp             --------CCCBSCC-CCEEEETTCCEEEECBC-C----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             eeECccCCCceecCC-CCeEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEE
Confidence            344445566665544 45678899999999999 7888899999999988766666666555678999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEEeCCc
Q psy17058        253 CIAENSAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       253 C~~~~~~~~~~~~~~l~V~~~p~  275 (471)
                      |.+.|..|.....+.|.|..+|.
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           81 CQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             EEEC----CEEEEEEEEEEC---
T ss_pred             EEEEeCCCceEEEEEEEEeCCCc
Confidence            99999999999899999987654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=4e-12  Score=98.31  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=79.2

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee--eceEEEeccCCCCCeEEEEEEEc
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      +|.+.. .+....+.+|+.++|.|.+ .+.|.+.+.|+|++..+....++.+...  ...|.|.+++.+|+|.|+|.+.|
T Consensus         7 pp~i~~-~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            7 GPQIIQ-FPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCEESC-CCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCEEEe-CCCCeEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            444443 4456788999999999999 7889999999999988766666555432  45799999999999999999999


Q ss_pred             CCCceEEEEEEEEEeCCceeeC
Q psy17058        258 SAGKEVMNAYIHVLTLPAVTIT  279 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p~~~~~  279 (471)
                      ..|.....+.|.|...|.....
T Consensus        85 ~~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             SSCEEECCEEEEEECSCSCCCC
T ss_pred             CCCcEEEEEEEEEECCCCCCCC
Confidence            9998888899999887765433

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.40  E-value=7.1e-13  Score=102.63  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=67.6

Q ss_pred             cCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc----c-----cCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy17058        287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD----E-----LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV  357 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~----~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  357 (471)
                      ..+..+.|.|.+.|+|.|+|+|+|+|..+.......    .     ....+.|.|.+++..|+|.|+|.|.|..|....+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            467789999999999999999999999987542210    0     1235789999999999999999999999999999


Q ss_pred             EEEEEecCC
Q psy17058        358 ITVAVEHRP  366 (471)
Q Consensus       358 ~~l~V~~~p  366 (471)
                      +.|.|...|
T Consensus        93 ~~l~v~~~P  101 (126)
T 1he7_A           93 IMAAFMDNP  101 (126)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            999998876

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.40  E-value=9.1e-13  Score=99.30  Aligned_cols=80  Identities=26%  Similarity=0.477  Sum_probs=67.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ...+.+|+++.|.|.+.|.|.+.+.|++++..+.....   ........+|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   96 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   96 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEE
Confidence            45788999999999999999999999999988764322   112234468999999999999999999999999988888


Q ss_pred             EEE
Q psy17058        360 VAV  362 (471)
Q Consensus       360 l~V  362 (471)
                      |.|
T Consensus        97 l~V   99 (100)
T 3caf_A           97 LDV   99 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            877

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.38  E-value=1.6e-12  Score=102.00  Aligned_cols=88  Identities=25%  Similarity=0.380  Sum_probs=68.3

Q ss_pred             CCCccEEecCCCcEEEEEEEeec--CCCeEEEEeCCccCCCc------cc----ccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGR--PMPTVSWVKYIAPFDRN------LE----RDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~------~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+...+.+.+|+++.|.|.+.|.  |.+.+.|++++..+...      ..    .......++|.|.+++.+|+|.|+|.
T Consensus        13 ~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (122)
T 3s35_X           13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA   92 (122)
T ss_dssp             ESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEE
Confidence            34444578889999999999994  45689999998854311      00    00012456899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEecCC
Q psy17058        347 GKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       347 a~n~~g~~~~~~~l~V~~~p  366 (471)
                      |.|..|.....+.|.|..+|
T Consensus        93 a~n~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           93 ASSGLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             EECSSCEEEEEEEEEEEEEE
T ss_pred             EccCCCceEEEEEEEEeccC
Confidence            99999999999999998764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.38  E-value=2.3e-12  Score=96.85  Aligned_cols=91  Identities=24%  Similarity=0.345  Sum_probs=72.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ........+|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~P~i~~~~-~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            6 KPVIVTGL-QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEECC-CCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecC-ccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            34444443 356889999999999999999999999999988754322  122234458999999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy17058        351 AGTEEKVITVAVEH  364 (471)
Q Consensus       351 ~g~~~~~~~l~V~~  364 (471)
                      .|..+..+.|.|..
T Consensus        85 ~g~~~~~~~l~V~~   98 (99)
T 3puc_A           85 AGSVSSSCKLTIKA   98 (99)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEeEEEEEEEEe
Confidence            99999999998864

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.38  E-value=5.2e-12  Score=106.07  Aligned_cols=162  Identities=13%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             eeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe-eeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       183 ~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      +.+.+. ...+.+|+++.|.|.+ ....+..+.|.-.     +........ ....+.|.+++ +|++.|.|.+......
T Consensus         5 v~v~P~-~~~V~~G~Sv~l~Cs~-~c~~p~~~~~~t~-----l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~   76 (196)
T 3bn3_B            5 ADLQPR-VAFVERGGSLWLNCST-NCPRPERGGLETS-----LRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRT   76 (196)
T ss_dssp             EEEESS-EEEEETTEEEEEEEEE-CCSSCSEEEEECS-----SEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEE
T ss_pred             EEEcCC-CcEEcCCCeEEEEEeC-CCCCCCccEEEEc-----cCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCc
Confidence            334443 3468899999999998 4333336777531     111111111 12248889998 7878799998876666


Q ss_pred             eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCe--EEEEeCCccCCCcccccc----cCceeEEEEee
Q psy17058        262 EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPT--VSWVKYIAPFDRNLERDE----LTSRAVYTIAS  334 (471)
Q Consensus       262 ~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~--i~W~~~~~~~~~~~~~~~----~~~~~~l~i~~  334 (471)
                      ....+.|.|+.+|...........+.+|+.++|+|.+.+ .|...  |.|+++++.+........    .....++++..
T Consensus        77 ~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~  156 (196)
T 3bn3_B           77 LQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLA  156 (196)
T ss_dssp             EEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEEC
T ss_pred             eEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEee
Confidence            788899999987764333222224789999999999987 55544  899999988753321111    11335677776


Q ss_pred             cCCCCCeEEEEEEEcCCC
Q psy17058        335 VRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g  352 (471)
                      ...+|...|+|+|.|..+
T Consensus       157 ~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          157 RREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CGGGTTCEEEEEEEEECG
T ss_pred             eeccCCCeEEEEEEccCC
Confidence            666666699999998766

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.38  E-value=1.7e-12  Score=96.68  Aligned_cols=79  Identities=19%  Similarity=0.414  Sum_probs=66.6

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      .....+.+|+++.|.|.+.|.| +.+.|++++..+....+.  ......|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   92 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRT--RITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV   92 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSE--EECSSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCE--EEeCCEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence            3456889999999999999987 799999999887643321  1226789999999999999999999999999888888


Q ss_pred             EE
Q psy17058        361 AV  362 (471)
Q Consensus       361 ~V  362 (471)
                      .|
T Consensus        93 ~V   94 (95)
T 2ckn_A           93 NV   94 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=9.7e-13  Score=102.50  Aligned_cols=96  Identities=21%  Similarity=0.264  Sum_probs=73.4

Q ss_pred             EEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccccc------CceeEEEEeecCCCCC
Q psy17058        267 YIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL------TSRAVYTIASVRESDA  340 (471)
Q Consensus       267 ~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~  340 (471)
                      .|.|..+|.+.....    ....+...|.|.+.|+|.|.+.|+++|..+.........      ...+.|.|.+++.+|+
T Consensus         2 ~L~V~~pP~i~~~~~----~~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             --CCCCCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             EEEEecCCceeccCC----CeeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcC
Confidence            466777777654422    122366789999999999999999999887644321111      1467899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      |.|+|.|.|..|..+.++.|.|...|
T Consensus        78 G~Y~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           78 GNYTLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEEEECCCCeEeeEEEEEEccCC
Confidence            99999999999999999999988876

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=98.24  Aligned_cols=85  Identities=21%  Similarity=0.340  Sum_probs=69.3

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      ..+|.+...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....    ....|.|.+++.+|+|.|+|.+.|..
T Consensus         9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   87 (99)
T 2yr3_A            9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENAL   87 (99)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEES-SSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSS
T ss_pred             ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEEC-CEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECC
Confidence            45788888899999999999999999 8888899999999 555543222    44689999999999999999999998


Q ss_pred             CceeeeeEEEEE
Q psy17058        164 GNVFQDYASIQV  175 (471)
Q Consensus       164 ~~~~~~~~~l~v  175 (471)
                      |. ....+.|.|
T Consensus        88 g~-~~~~~~l~V   98 (99)
T 2yr3_A           88 GQ-VSCSAWVTV   98 (99)
T ss_dssp             CE-EEEECCEEE
T ss_pred             Ce-EEEEEEEEE
Confidence            87 555555544

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.37  E-value=2.3e-12  Score=96.00  Aligned_cols=84  Identities=26%  Similarity=0.455  Sum_probs=67.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      ..+|.+...|....+.+|+++.|.|. .+.| +.+.|+++ +..+.....   .++.|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~-g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   84 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG   84 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBT-TBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEEC-CEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCC
Confidence            56778877888999999999999999 6667 79999998 655543222   567999999999999999999999887


Q ss_pred             ceeeeeEEEEE
Q psy17058        165 NVFQDYASIQV  175 (471)
Q Consensus       165 ~~~~~~~~l~v  175 (471)
                      . ......|.|
T Consensus        85 ~-~~~~~~l~V   94 (95)
T 2ckn_A           85 S-DTTYFSVNV   94 (95)
T ss_dssp             E-EEEEEEEEE
T ss_pred             c-EEEEEEEEE
Confidence            6 555555544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.37  E-value=3.6e-12  Score=95.56  Aligned_cols=87  Identities=30%  Similarity=0.455  Sum_probs=69.0

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +.+.+.+.....+.+|+++.|.|.+. +.|.+.+.|++++.......   .....++|.|.+++.+|+|.|+|.|.|..|
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDFNGILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT---EEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce---eecCCCEEEEeCCChhhCEEEEEEecCCCC
Confidence            33444545566889999999999998 58899999999755432221   123346899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy17058        353 TEEKVITVAVE  363 (471)
Q Consensus       353 ~~~~~~~l~V~  363 (471)
                      ..+.++.|.|.
T Consensus        87 ~~~~~~~l~V~   97 (98)
T 1gl4_B           87 MDQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ccccEEEEEEe
Confidence            99999888875

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=6.4e-13  Score=102.11  Aligned_cols=93  Identities=25%  Similarity=0.435  Sum_probs=75.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....   ........+|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~P~i~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            9 RPHFLQAP-GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCEEEECC-CEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCcEEeCC-CcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            45555544 457889999999999999999999999999988764321   11123356899999999999999999999


Q ss_pred             CCCceEEEEEEEEecCC
Q psy17058        350 SAGTEEKVITVAVEHRP  366 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~~p  366 (471)
                      ..|..+..+.|.|..+|
T Consensus        88 ~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             SSCEEEECCEEEEECCC
T ss_pred             CCCEEEEEEEEEEeCCC
Confidence            99999999999999876

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=99.31  Aligned_cols=93  Identities=18%  Similarity=0.325  Sum_probs=74.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccc-cCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDE-LTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....   ... ......|.|.+++.+|+|.|+|.|.
T Consensus         8 ~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            8 APFFEMKL-KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCBSSCC-CCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCEEEecC-cCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            45555444 457889999999999999999999999999988764211   111 1234589999999999999999999


Q ss_pred             cCCCceEEEEEEEEecCC
Q psy17058        349 NSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       349 n~~g~~~~~~~l~V~~~p  366 (471)
                      |..|..+..+.|.|...|
T Consensus        87 N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             CTTCCEEECCCEEEECCS
T ss_pred             ECCCeEEEEEEEEEECCC
Confidence            999999999999998765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=1.8e-12  Score=97.39  Aligned_cols=85  Identities=18%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ....|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEEC-CEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            5788888899999999999999999 8889999999999 555443221        23479999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ....+.|.|.
T Consensus        83 N~~g~-~~~~~~l~V~   97 (99)
T 1g1c_A           83 NIAGE-TSSHAFLLVQ   97 (99)
T ss_dssp             ETTEE-EEEEEEEEEE
T ss_pred             ECCCc-EEEEEEEEEe
Confidence            99887 5555556554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.36  E-value=9.1e-13  Score=100.38  Aligned_cols=90  Identities=26%  Similarity=0.539  Sum_probs=73.3

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+.....  ........+|.|.+++.+|+|.|+|.|.|.
T Consensus        14 ~~~i~~~p-~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           14 AARILTKP-RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCEEEECC-CCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCEEEECC-CCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            34454444 457899999999999999999999999999988754322  122334679999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy17058        351 AGTEEKVITVAVE  363 (471)
Q Consensus       351 ~g~~~~~~~l~V~  363 (471)
                      .|..+.++.|.|.
T Consensus        93 ~G~~~~~~~l~V~  105 (106)
T 1nct_A           93 EGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCBCCEEEEEEEC
T ss_pred             CCeEEEEEEEEEE
Confidence            9999999999885

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-12  Score=97.37  Aligned_cols=84  Identities=21%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .+..+..+.+|+++.|.|.+  .|.+.+.|+|+|..+....+  .........|.|.++..+|+|.|+|.|.|.  ..+.
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~   87 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTL   87 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCE
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeE
Confidence            34456789999999999999  88899999999998864322  222344568999999999999999999998  5567


Q ss_pred             EEEEEEecCC
Q psy17058        357 VITVAVEHRP  366 (471)
Q Consensus       357 ~~~l~V~~~p  366 (471)
                      ++.|.|..+|
T Consensus        88 ~a~L~V~~~P   97 (100)
T 2yuz_A           88 PAKVHVISGP   97 (100)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEeCCC
Confidence            7888888776

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=95.99  Aligned_cols=93  Identities=31%  Similarity=0.525  Sum_probs=73.6

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQELGVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      .+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+... .++.+ ..++.|.|.+++.+|+|.|+|.+.|
T Consensus         7 ~~P~i~~~p-~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            7 GPPIILQGP-ANQTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATI-QEQGTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             SSCEEEECC-CCEEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEE-CTTCCEEEESCCTTTCCEEEEEEEC
T ss_pred             CCCEEEeCc-CCEEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEE-cCCCEEEEccCCcccCEEEEEEEEc
Confidence            345555443 45678899999999999 78899999999998875533 23333 3366899999999999999999999


Q ss_pred             CCCceEEEEEEEEEeCC
Q psy17058        258 SAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p  274 (471)
                      ..|.....+.|.|..+|
T Consensus        84 ~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           84 SSGETSWSAVLDVTESG  100 (100)
T ss_dssp             SSCCCBCCEEEEEESCC
T ss_pred             CCCCEEEEEEEEEecCC
Confidence            99988888888887653

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.35  E-value=5.4e-12  Score=96.45  Aligned_cols=89  Identities=17%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCC---CeEEEEeCCccCCC-----cccc------cccCceeEEEEeecCCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVKYIAPFDR-----NLER------DELTSRAVYTIASVRESD  339 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~---~~i~W~~~~~~~~~-----~~~~------~~~~~~~~l~i~~~~~~d  339 (471)
                      |.+...| ..+.+.+|++++|.|.+.|.|.   +.+.|+|++.....     ....      ........|.|.+++.+|
T Consensus         5 p~f~~~p-~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            5 GLFVMRP-QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CSCSBCC-CCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             cEEEeCC-CcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            4444444 4678999999999999999998   89999997622110     0000      011135789999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        340 AGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       340 ~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +|.|+|.|.|..|..+.++.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999885

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.35  E-value=6.2e-12  Score=92.81  Aligned_cols=83  Identities=18%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      .++.+.+.|....+.+|+++.|.|. .+.|.+.+.|+++ +..+...  ....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s   78 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-ELPLTHE--TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS   78 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEET-TEECTTC--CSSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcC-CeeCCcC--CCCeEEECCCCHHhCEEEEEEEEcCCCCEEe
Confidence            3577888899999999999999999 8889999999999 5554433  3568999999999999999999998886333


Q ss_pred             eeEEEEE
Q psy17058        169 DYASIQV  175 (471)
Q Consensus       169 ~~~~l~v  175 (471)
                      ....|.|
T Consensus        79 ~~~~l~V   85 (91)
T 3bfo_A           79 KKVEIII   85 (91)
T ss_dssp             CCEEEEE
T ss_pred             eeEEEEE
Confidence            3444444

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.35  E-value=9.6e-12  Score=108.91  Aligned_cols=160  Identities=17%  Similarity=0.249  Sum_probs=97.2

Q ss_pred             CCceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCC--CCC------------cCCCceEEee----eceEEEeccCCCC
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDN--DGK------------FGPDVEVYQE----LGVLRFNNIATGD  247 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~--~~~------------~~~~~~~~~~----~~~l~i~~~~~~d  247 (471)
                      +....+.+|++++|.|.+ .+.+  ...+.|+|...  ...            ...++.+..+    ...|.|.+++.+|
T Consensus         8 p~~v~v~~G~~vtL~C~~-s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A            8 HQTVPVSIGVPATLRCSM-KGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (229)
T ss_dssp             CSEEEEETTCCEEEEEEE-CSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEeEe-cCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhH
Confidence            345578899999999998 4333  46899998632  111            1234444321    2379999999999


Q ss_pred             CeEEEEEEEcCC------Cc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCC
Q psy17058        248 EGKYTCIAENSA------GK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDR  317 (471)
Q Consensus       248 ~G~Y~C~~~~~~------~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~  317 (471)
                      +|.|.|.+.+..      ..  ......|.|.........|  .+.+.. ..+.|.|.+.| +|.+ .+.|+++ ..+..
T Consensus        87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P--~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~  162 (229)
T 1hxm_A           87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP--SVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITE  162 (229)
T ss_dssp             CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCC--EEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEE
T ss_pred             CeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCC--cEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEec
Confidence            999999998753      11  1123467776421111111  122111 23589999998 4554 8999998 66542


Q ss_pred             cccccccCceeEEEEeecC-CCCCeEEEEEEEcCCC
Q psy17058        318 NLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAG  352 (471)
Q Consensus       318 ~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g  352 (471)
                      ..........+++.+.... .++.|.|+|.|.|..+
T Consensus       163 ~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          163 FDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             CCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             CccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            2111111223344444433 3788999999999864

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.35  E-value=2.8e-12  Score=96.34  Aligned_cols=85  Identities=24%  Similarity=0.412  Sum_probs=68.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .+|.+...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ...+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEET-TEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            4788888899999999999999999 8888899999999 555443211        22379999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ......|.|.
T Consensus        83 N~~g~-~~~~~~l~V~   97 (99)
T 1u2h_A           83 NEYGA-RQCEARLEVR   97 (99)
T ss_dssp             ETTEE-EEEEEEEEEE
T ss_pred             ECCCc-eeEEEEEEEE
Confidence            98887 5555566554

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=3e-12  Score=96.14  Aligned_cols=86  Identities=22%  Similarity=0.342  Sum_probs=70.6

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      ..+..+..+.+|+.++|.|.+   .|.+.+.|+|++..+....++.+...+  ..|.|.++..+|+|.|+|.+.|.  ..
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~   85 (100)
T 2yuz_A           11 LTPLTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NV   85 (100)
T ss_dssp             SBCCCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CC
T ss_pred             eccCCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--Ce
Confidence            344556789999999999998   677899999999887777777666543  37999999999999999999987  55


Q ss_pred             EEEEEEEEEeCCc
Q psy17058        263 VMNAYIHVLTLPA  275 (471)
Q Consensus       263 ~~~~~l~V~~~p~  275 (471)
                      +.++.|.|..+|.
T Consensus        86 ~~~a~L~V~~~P~   98 (100)
T 2yuz_A           86 TLPAKVHVISGPS   98 (100)
T ss_dssp             CEEEEEEEECCSC
T ss_pred             eEEEEEEEeCCCC
Confidence            6778888887764

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.34  E-value=3e-12  Score=97.01  Aligned_cols=85  Identities=25%  Similarity=0.393  Sum_probs=70.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .+|.+...+....+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEEC-CEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            5788888899999999999999999 7889999999999 555543222       234799999999999999999999


Q ss_pred             cCCceeeeeEEEEEe
Q psy17058        162 AQGNVFQDYASIQVD  176 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~  176 (471)
                      ..|. ....+.|.|.
T Consensus        86 ~~G~-~~~~~~l~V~   99 (103)
T 3qp3_A           86 YKGE-ASDYATLDVT   99 (103)
T ss_dssp             TTEE-EEEEEEEEEE
T ss_pred             CCCc-EEEEEEEEEE
Confidence            9887 5666666665

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=93.52  Aligned_cols=78  Identities=27%  Similarity=0.457  Sum_probs=62.3

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ..+.+.+|+++.|.|.+.+ |.|.+.|+|+|..+....  .........+|.|.+++.+|+|.|+|.|.|    .+.++.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            3568899999999999965 888999999999986432  222334557899999999999999999844    566778


Q ss_pred             EEEec
Q psy17058        360 VAVEH  364 (471)
Q Consensus       360 l~V~~  364 (471)
                      |.|..
T Consensus        79 l~V~e   83 (84)
T 2lu7_A           79 VSVEE   83 (84)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88865

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.34  E-value=3.3e-12  Score=98.96  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CC---CCCCeEEEEeCCCCCC-----CCCcc-----------cCcEEEEcCCCCC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SN---DPSATIKWSKDNQEQL-----PPNMI-----------AGETLIINGITKA  150 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~---~p~~~v~W~~~~~~~~-----~~~~~-----------~~~~L~i~~v~~~  150 (471)
                      .+.|...|.++.+.+|++++|.|. .+   .|.+.|.|||+ +...     .....           ....|+|.+++.+
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kg-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKG-KWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEES-SSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeC-cCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence            356777889999999999999998 44   38899999997 3110     00111           2478999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEee
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVDK  177 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~~  177 (471)
                      |+|.|+|++.|..+. .+..+.|.|.+
T Consensus        86 DaG~Y~Cevsn~~g~-~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKF-DSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCE-EEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCc-EEEEEEEEEEe
Confidence            999999999999876 77778888775

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=3.5e-12  Score=95.22  Aligned_cols=85  Identities=26%  Similarity=0.505  Sum_probs=68.0

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ...+|.+...|....+.+|++++|.|. .+.|.+.+.|+|+ +..+...  ....|.|.+++.+|+|.|+|.+.|..+. 
T Consensus         7 ~~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~~~-   82 (96)
T 2ens_A            7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-GVPLPLP--PSPVLILPEIGPQDQGTYSCVATHSSHG-   82 (96)
T ss_dssp             CCCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEES-SSBCSSC--CCSEEEEESCCTTTCEEEECEECCSSCC-
T ss_pred             CCCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEEC-CEECcCC--CCCEEEECCCCcccCEEEEEEEEeCCCC-
Confidence            346788899998999999999999999 8888899999998 6555432  4679999999999999999999996544 


Q ss_pred             eeeeEEEEEe
Q psy17058        167 FQDYASIQVD  176 (471)
Q Consensus       167 ~~~~~~l~v~  176 (471)
                      ...+..+.|.
T Consensus        83 ~~~s~~~~v~   92 (96)
T 2ens_A           83 PQESRAVSIS   92 (96)
T ss_dssp             CEECCCEEEE
T ss_pred             cEEEEEEEEE
Confidence            3334444444

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=5.9e-12  Score=98.01  Aligned_cols=93  Identities=20%  Similarity=0.309  Sum_probs=73.9

Q ss_pred             CCeeeec--CCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee--eceEEEeccCCCCCeEEEEEE
Q psy17058        180 MPRIRIH--PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       180 ~p~~~~~--~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      +|.+.+.  ......+.+|+.++|.|.+ .+.|.+.+.|+|++..+. ..+..+...  ...|.|.++..+|+|.|+|.+
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEE-ccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            4555433  3456678899999999999 788999999999988765 344444332  345999999999999999999


Q ss_pred             EcCCCceEEEEEEEEEeCC
Q psy17058        256 ENSAGKEVMNAYIHVLTLP  274 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~~~p  274 (471)
                      .|..|..+..+.|.|..+|
T Consensus        99 ~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             ECSSCEECCEEEEEEECCC
T ss_pred             EeCCCeEEEEEEEEEEcCC
Confidence            9999988888899988765

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.33  E-value=5.4e-12  Score=93.28  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ..++.|...+.++.+.+|+++.|.|....+.+.+.|+|+ +..+.....       ....|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~v~W~k~-g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-GQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESSSSCCCEEEET-TEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECCCCCeEEEEEC-CEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            457888888999999999999999993235578999999 666544322       235899999999999999999977


Q ss_pred             cCCceeeeeEEEEEe
Q psy17058        162 AQGNVFQDYASIQVD  176 (471)
Q Consensus       162 ~~~~~~~~~~~l~v~  176 (471)
                      .     ..++.|.|.
T Consensus        82 ~-----~~sa~L~V~   91 (93)
T 1waa_A           82 T-----KSAANLKVK   91 (93)
T ss_dssp             E-----EEEEEEEEE
T ss_pred             C-----cEEEEEEEE
Confidence            3     345666664

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.33  E-value=6.6e-14  Score=109.92  Aligned_cols=102  Identities=17%  Similarity=0.250  Sum_probs=81.0

Q ss_pred             EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCe-EEEEeCCccCCCc--cc--c--cccCc--eeEEEEe
Q psy17058        263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRN--LE--R--DELTS--RAVYTIA  333 (471)
Q Consensus       263 ~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~--~~--~--~~~~~--~~~l~i~  333 (471)
                      +..+.|.|..+|.+.. + ....+.+|+.+.|.|.+.|.|.|. +.|++++..+...  .+  .  .....  .+.|.|.
T Consensus         4 ~~~~~l~V~~~P~i~~-~-~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~   81 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS-T-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS   81 (122)
T ss_dssp             SCCCCCCCCSSCCEEE-E-CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred             ceEEEEEEecCCCccC-C-CeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence            3455677888888876 3 456789999999999999999986 9999998877642  11  1  00112  5689999


Q ss_pred             ecCCCCC-eEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        334 SVRESDA-GQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       334 ~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +++.+|. |.|+|.|.|..|.....+.|.|...+
T Consensus        82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CCChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence            9999999 99999999999999999999988654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.32  E-value=9.2e-12  Score=96.47  Aligned_cols=95  Identities=25%  Similarity=0.448  Sum_probs=75.7

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-CCCceEEeeec---eEEEeccCCCCCeEEEEEE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-GPDVEVYQELG---VLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~~  255 (471)
                      +|.+... +....+.+|+.++|.|.+ .+.|.+.+.|++++..+.. ..++.+.....   .|.|.+++.+|+|.|+|.+
T Consensus        15 ~p~f~~~-p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           15 APMFIYK-PQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CCCBSSC-CCCEEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCeEEeC-CCcEEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4444444 445688999999999999 7889999999999877554 34454444322   7999999999999999999


Q ss_pred             EcCCCceEEEEEEEEEeCCce
Q psy17058        256 ENSAGKEVMNAYIHVLTLPAV  276 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~~~p~~  276 (471)
                      .|..|.....+.|.|..+|..
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSCC
T ss_pred             EcCCCeEEEEEEEEEeCCCCC
Confidence            999999888999999877653

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.32  E-value=1.2e-11  Score=92.72  Aligned_cols=87  Identities=28%  Similarity=0.484  Sum_probs=66.1

Q ss_pred             CCCCcEEEc-CCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCCCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         89 PQANEVQVT-PRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        89 ~~~~~v~~~-p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      ..++.+.+. |....+.+|+++.|.|. . +.|.+.+.|++++......... .++.|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B            7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             --CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCC
Confidence            345666665 45678999999999999 5 6889999999984333333222 567999999999999999999999988


Q ss_pred             ceeeeeEEEEEe
Q psy17058        165 NVFQDYASIQVD  176 (471)
Q Consensus       165 ~~~~~~~~l~v~  176 (471)
                      . ......|.|.
T Consensus        87 ~-~~~~~~l~V~   97 (98)
T 1gl4_B           87 M-DQGTATLHVQ   97 (98)
T ss_dssp             E-EEEEEEEEEC
T ss_pred             c-cccEEEEEEe
Confidence            7 5556666553

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.1e-12  Score=96.57  Aligned_cols=86  Identities=26%  Similarity=0.385  Sum_probs=69.9

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-c--c----cC--cEEEEcCCCCCCCeEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-M--I----AG--ETLIINGITKADEGVYICS  158 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-~--~----~~--~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ..+|.|...|....+.+|+++.|.|. .+.|.+.+.|+++ +..+... .  .    ..  ..|.|.+++.+|+|.|+|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECS-SCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEEC-CEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            46788888888999999999999999 8889999999998 5555432 1  1    12  2799999999999999999


Q ss_pred             EEecCCceeeeeEEEEEe
Q psy17058        159 IQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~  176 (471)
                      +.|..|. ....+.|.|.
T Consensus        85 a~N~~g~-~~~~~~l~V~  101 (110)
T 2dm2_A           85 AANPQGR-ISCTGRLMVQ  101 (110)
T ss_dssp             EECTTCC-EEECCCEEEE
T ss_pred             EEECCCe-EEEEEEEEEE
Confidence            9999988 5666666665

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.9e-12  Score=98.17  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=66.3

Q ss_pred             CccEEecCCCcEEEEEEEeec---CCCeEEEEeCCc-cCCC----cccc------cccCceeEEEEeecCCCCCeEEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGR---PMPTVSWVKYIA-PFDR----NLER------DELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~---p~~~i~W~~~~~-~~~~----~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      +.++.+.+|++++|.|.+.|.   |.|.|.|+|+.. .+..    ....      ........|.|.++...|+|.|+|+
T Consensus        19 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce   98 (118)
T 2edn_A           19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE   98 (118)
T ss_dssp             CCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence            456789999999999999875   788999999741 1111    1110      0111358899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEecC
Q psy17058        347 GKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       347 a~n~~g~~~~~~~l~V~~~  365 (471)
                      |.|..|..+..+.|.|..+
T Consensus        99 vsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           99 VKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EECSSCEEEEEECCEEECC
T ss_pred             EEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999864

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.31  E-value=1.9e-11  Score=91.35  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=70.1

Q ss_pred             CCCceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCCcCCCceEEeeec--eEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        187 PNASQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       187 ~~~~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      ++....+.+|+.++|.|.+ .+. |.+.+.|++++..+....++.+...++  .|.|.+++..|+|.|+|.+.|..|...
T Consensus         7 ~~~~~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   85 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDS   85 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCcCEEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEe
Confidence            4456678899999999999 565 889999999998766666666544444  899999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy17058        264 MNAYIHVL  271 (471)
Q Consensus       264 ~~~~l~V~  271 (471)
                      ..+.|.|.
T Consensus        86 ~~~~l~V~   93 (97)
T 2bk8_A           86 SYAELFVK   93 (97)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEE
Confidence            88888775

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.4e-12  Score=98.02  Aligned_cols=87  Identities=24%  Similarity=0.439  Sum_probs=71.6

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      ..+|.|...|..+.+.+|++++|.|. .+.|.+.+.|+++ +..+.....        ....|.|.+++.+|+|.|+|.+
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBS-SSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            45788999999999999999999999 8889999999998 555443221        2358999999999999999999


Q ss_pred             EecCCceeeeeEEEEEee
Q psy17058        160 QNAQGNVFQDYASIQVDK  177 (471)
Q Consensus       160 ~~~~~~~~~~~~~l~v~~  177 (471)
                      .|..+. ....+.|.|..
T Consensus        86 ~n~~g~-~~~~~~l~V~~  102 (110)
T 2dm3_A           86 TNRAGQ-NSFSLELVVAA  102 (110)
T ss_dssp             ECSSCE-EEECCEEEEEC
T ss_pred             ECCCCE-EEEEEEEEEeC
Confidence            999887 66666677653

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=91.47  Aligned_cols=82  Identities=24%  Similarity=0.580  Sum_probs=65.7

Q ss_pred             eeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       276 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      +...| ....+.+|+.+.|.|.+.|+|.+.+.|++++..+...       ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus         6 i~~~p-~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A            6 ICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             EEECC-CCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEECC-CccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-------CCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            33443 3467889999999999999999999999998876432       246899999999999999999999999754


Q ss_pred             -EEEEEEEecC
Q psy17058        356 -KVITVAVEHR  365 (471)
Q Consensus       356 -~~~~l~V~~~  365 (471)
                       ..+.|.|.+.
T Consensus        78 s~~~~l~V~~~   88 (91)
T 3bfo_A           78 SKKVEIIIDEL   88 (91)
T ss_dssp             CCCEEEEEC--
T ss_pred             eeeEEEEEehh
Confidence             5577777653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.31  E-value=2.5e-11  Score=95.03  Aligned_cols=96  Identities=18%  Similarity=0.337  Sum_probs=70.4

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCC--CCCCeEEEEeCCCCCCc-----CCCceE-----EeeeceEEEeccCCCCCeEEE
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAG--EPSPTQTWIRPDNDGKF-----GPDVEV-----YQELGVLRFNNIATGDEGKYT  252 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~--~p~~~v~W~~~~~~~~~-----~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~  252 (471)
                      +.+.....+.+|+.++|.|.+ .+  .|.+.+.|++++..+..     ......     ....+.|.|.+++.+|+|.|+
T Consensus        12 i~p~~~v~v~~G~~v~L~C~~-~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (122)
T 3s35_X           12 LSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT   90 (122)
T ss_dssp             EESCSCEEEEETCCEEEEEEE-EECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEE
T ss_pred             EcCCCCEEEecCCeEEEEEEE-EcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEE
Confidence            344445578899999999999 55  45578999999875321     111111     123567999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEEeCCceeeCCC
Q psy17058        253 CIAENSAGKEVMNAYIHVLTLPAVTITPS  281 (471)
Q Consensus       253 C~~~~~~~~~~~~~~l~V~~~p~~~~~~~  281 (471)
                      |.|.|..|.....+.|.|..+|.+.+.+.
T Consensus        91 C~a~n~~g~~~~~~~l~V~~~p~i~~~p~  119 (122)
T 3s35_X           91 CAASSGLMTKKNSTFVRVHEKPFVAFGSG  119 (122)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEECC-----
T ss_pred             EEEccCCCceEEEEEEEEeccCeEEeecC
Confidence            99999999999999999999998877653

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.30  E-value=3.3e-12  Score=97.26  Aligned_cols=86  Identities=21%  Similarity=0.450  Sum_probs=70.8

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ..+|.|...|..+.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.+.
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSS-SSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEC-CEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            45688889999999999999999999 8889999999999 555543222       24689999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ....+.|.|.
T Consensus        91 N~~G~-~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGK-QEAEFTLTIQ  105 (106)
T ss_dssp             CSSCB-CCEEEEEEEC
T ss_pred             eCCCe-EEEEEEEEEE
Confidence            99887 5556666553

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=3.9e-12  Score=95.52  Aligned_cols=81  Identities=17%  Similarity=0.390  Sum_probs=67.7

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      ...+.+|+.+.|.|.+.+.| +.+.|++++..+........  ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   88 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI--TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV   88 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEE--CSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECB
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEE--ECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            34678999999999999877 79999999988754332111  2568999999999999999999999999999999999


Q ss_pred             ecCC
Q psy17058        363 EHRP  366 (471)
Q Consensus       363 ~~~p  366 (471)
                      ...+
T Consensus        89 ~~~~   92 (99)
T 2cr3_A           89 SDAL   92 (99)
T ss_dssp             CSCC
T ss_pred             ecCC
Confidence            8764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=93.11  Aligned_cols=92  Identities=22%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe-ee--ceEEEeccCCCCCeEEEEEEE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-EL--GVLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      +|.+... +....+.+|+.++|.|.+ .+.|.+.+.|++++..+.......... ..  ..|.|.+++..|+|.|+|.+.
T Consensus         5 ~P~~~~~-p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            5 PPRFIQV-PENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             EEECCCC-CCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEeC-CCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            3444333 345678899999999999 678889999999987755544333222 12  379999999999999999999


Q ss_pred             cCCCceEEEEEEEEEeC
Q psy17058        257 NSAGKEVMNAYIHVLTL  273 (471)
Q Consensus       257 ~~~~~~~~~~~l~V~~~  273 (471)
                      |..|..+..+.|.|...
T Consensus        83 n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           83 NRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             cCCCeEEEEEEEEEEec
Confidence            99999888888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.29  E-value=4.2e-12  Score=119.71  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc---cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL---ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      .+.+.+|+++.|.|.+.| |.+.+.|++++..+....   ..... ..++|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus       255 ~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~  332 (361)
T 2xot_A          255 AWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVE  332 (361)
T ss_dssp             CCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEE
T ss_pred             CceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEEEEE
Confidence            458899999999999998 999999999776543211   01112 4568999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEeccc
Q psy17058        360 VAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA  439 (471)
Q Consensus       360 l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  439 (471)
                      |.|...                                               +           .+|+.+.|.|.+.|.
T Consensus       333 l~V~~~-----------------------------------------------~-----------~~g~~~~l~C~~~g~  354 (361)
T 2xot_A          333 LKVYNF-----------------------------------------------T-----------LHGHHDTLNAAADPW  354 (361)
T ss_dssp             EEEESS-----------------------------------------------C-----------CC-------------
T ss_pred             EEEEee-----------------------------------------------e-----------ccCCceEEEEEeCCC
Confidence            998653                                               1           468899999999999


Q ss_pred             CCceEE
Q psy17058        440 TPISIR  445 (471)
Q Consensus       440 p~~~v~  445 (471)
                      |+|+|+
T Consensus       355 P~P~i~  360 (361)
T 2xot_A          355 SHPQFE  360 (361)
T ss_dssp             ------
T ss_pred             CCCccc
Confidence            999874

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.29  E-value=9.6e-12  Score=94.17  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             eCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       278 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ..+.....+.+|+++.|.|.+.+ |.+.+.|++++..+....    ..........|.|.+++.+|+|.|+|.|.|    
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----   85 (103)
T 1x44_A           11 TKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   85 (103)
T ss_dssp             SBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             eccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----
Confidence            33445678899999999999987 778999999998876433    222233457899999999999999999988    


Q ss_pred             eEEEEEEEEecCC
Q psy17058        354 EEKVITVAVEHRP  366 (471)
Q Consensus       354 ~~~~~~l~V~~~p  366 (471)
                      .+.++.|.|..+|
T Consensus        86 ~~~~~~l~V~~~p   98 (103)
T 1x44_A           86 GQSSAKLSVDLKS   98 (103)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             CcEEEEEEEeCCC
Confidence            5777888888765

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.29  E-value=1.7e-11  Score=110.35  Aligned_cols=168  Identities=17%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             ceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCC-------------------cCCCceEEee----eceEEEeccCC
Q psy17058        190 SQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGK-------------------FGPDVEVYQE----LGVLRFNNIAT  245 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~----~~~l~i~~~~~  245 (471)
                      ...+.+|++++|.|.+... .....+.|||......                   ...++.+..+    ...|.|.+++.
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA  111 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence            3467899999999998321 2346899998532210                   1123333321    23599999999


Q ss_pred             CCCeEEEEEEEcC------CC------------c-------eEEEEEEEEE----eCCceee-CCCccEEecCCCcEEEE
Q psy17058        246 GDEGKYTCIAENS------AG------------K-------EVMNAYIHVL----TLPAVTI-TPSEYVSVRPGEPLTLE  295 (471)
Q Consensus       246 ~d~G~Y~C~~~~~------~~------------~-------~~~~~~l~V~----~~p~~~~-~~~~~~~~~~g~~v~l~  295 (471)
                      +|+|.|.|.+.+.      .+            .       ......|.|.    .+|.+.. .+..  ...+|+.+.|.
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~--~~~~g~~~~l~  189 (267)
T 3u1s_H          112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSS--KSTSGGTAALG  189 (267)
T ss_dssp             GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCG--GGEETTEEEEE
T ss_pred             hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCc--ccCCCCcEEEE
Confidence            9999999999620      00            0       0112345554    2344442 2222  23468999999


Q ss_pred             EEEee-cC-CCeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        296 CEATG-RP-MPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       296 C~~~g-~p-~~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      |.+.+ +| .+.+.|  ++..+.....        .......+.|.|.....+| +.|+|.|.|..+.......+.+
T Consensus       190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            99987 55 458999  5555432110        1112234578898888888 9999999998877666555544

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.29  E-value=4.2e-11  Score=90.02  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...+.....+.+|+++.|.|.+. .|.+.+.|++++..+....  ..........|.|.+++.+|+|.|+|.|   
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---
Confidence            455555544346788999999999998 7889999999998875432  2222334568999999999999999999   


Q ss_pred             CCceEEEEEEEEecCC
Q psy17058        351 AGTEEKVITVAVEHRP  366 (471)
Q Consensus       351 ~g~~~~~~~l~V~~~p  366 (471)
                       |....++.|.|..+|
T Consensus        83 -g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 -GDEKCSTELFVRSGP   97 (100)
T ss_dssp             -TTEEEEEEEEECCSC
T ss_pred             -CCceEEEEEEEecCC
Confidence             778888999998875

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.9e-12  Score=99.27  Aligned_cols=99  Identities=20%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             EEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc---ccCceeEEEEeecCCCCCeE
Q psy17058        266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD---ELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       266 ~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~  342 (471)
                      +.|.|..+|...........+.+|+++.|.|.+.|.|.|.+.|++++..+.......   .......|.|.+++.+|+|.
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   84 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT   84 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEE
Confidence            345566655444444456789999999999999999999999999998876432211   12445689999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEecCCCC
Q psy17058        343 YKCIGKNSAGTEEKVITVAVEHRPEY  368 (471)
Q Consensus       343 Y~C~a~n~~g~~~~~~~l~V~~~p~~  368 (471)
                      |+|.    .|.....+.|.|..+|..
T Consensus        85 Y~C~----~g~~~~~~~L~V~~~p~~  106 (115)
T 2cr6_A           85 IYFE----AGDQRASAALRVTEKPSV  106 (115)
T ss_dssp             EEEE----ETTEECCEEEEEECCSSC
T ss_pred             EEEE----ECCeeEEEEEEEECCCce
Confidence            9999    466777889999987643

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.28  E-value=2.1e-11  Score=91.49  Aligned_cols=90  Identities=26%  Similarity=0.399  Sum_probs=72.9

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec--eEEEeccCCCCCeEEEEEEEc
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      +|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|++++..+....++.+.....  .|.|.++..+|+|.|+|.+.|
T Consensus         6 ~P~i~~~~-~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            6 KPVIVTGL-QDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             EEEEEECC-CCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecC-ccEEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            34444433 45678899999999999 778889999999998776666666655333  699999999999999999999


Q ss_pred             CCCceEEEEEEEEE
Q psy17058        258 SAGKEVMNAYIHVL  271 (471)
Q Consensus       258 ~~~~~~~~~~l~V~  271 (471)
                      ..|..+..+.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 3puc_A           84 SAGSVSSSCKLTIK   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEE
Confidence            99988888888875

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.28  E-value=1e-11  Score=95.85  Aligned_cols=100  Identities=23%  Similarity=0.327  Sum_probs=75.6

Q ss_pred             CceEEEEEEEEEeCC-ceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecC
Q psy17058        260 GKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVR  336 (471)
Q Consensus       260 ~~~~~~~~l~V~~~p-~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~  336 (471)
                      +..+.++.|.|...| .+... .....+.+|+++.|.|.+.+.  |.+.|++++..+....+  .........|.|.+++
T Consensus         5 g~~~~~~~l~V~~~pp~~~~~-~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~   81 (113)
T 2edh_A            5 SSGRTSAMLTVRALPIKFTEG-LRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLV   81 (113)
T ss_dssp             CCCCCCCCCCCCCSCCCEEEC-CCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCC
T ss_pred             CCCcEEEEEEEEcCCCccccc-CCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCC
Confidence            344555667777555 55444 345689999999999999764  68999999988764322  1222344589999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .+|+|.|+|.|    |....++.|.|..+|
T Consensus        82 ~~D~G~Y~C~a----~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           82 AEDAGEYLCMC----GKERTSAMLTVRAMP  107 (113)
T ss_dssp             STTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred             hhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence            99999999999    778888999998876

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.28  E-value=9e-12  Score=91.45  Aligned_cols=84  Identities=21%  Similarity=0.375  Sum_probs=61.8

Q ss_pred             CceeeCCCccE--EecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        274 PAVTITPSEYV--SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       274 p~~~~~~~~~~--~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      |...+.|....  .+.+|+.+.|.|.+.+ |.+.+.|+|+|..+....  .........+|.|.++..+|+|.|+|.|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            33344454443  4568999999999865 888999999999987432  222334556899999999999999999866


Q ss_pred             CCCceEEEEEEEE
Q psy17058        350 SAGTEEKVITVAV  362 (471)
Q Consensus       350 ~~g~~~~~~~l~V  362 (471)
                          .+.++.|.|
T Consensus        83 ----~~~~~~ltV   91 (91)
T 2lvc_A           83 ----ECAYFTVTI   91 (91)
T ss_dssp             ----CEEEEEEEC
T ss_pred             ----eEEEEEEEC
Confidence                455566554

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.28  E-value=1.1e-11  Score=94.80  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCC---CeEEEEeCCCCCCC----CCcc-----------cCcEEEEcCCCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPS---ATIKWSKDNQEQLP----PNMI-----------AGETLIINGITKA  150 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~~~~~~----~~~~-----------~~~~L~i~~v~~~  150 (471)
                      +.|.+...|..+.+.+|++++|.|. .+.|.   +.|.|+|++.....    ....           ....|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4567777888999999999999999 78887   89999997311111    0000           2468999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |+|.|+|.+.|..|. ....+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~-~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKF-DCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCc-eEEEEEEEEe
Confidence            999999999999887 6666666663

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=89.47  Aligned_cols=77  Identities=22%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      ...+.+|+.++|.|.+ .+ |.+.++|+|++..+....++.+...+  ..|.|.+++.+|+|.|+|.|.    ..+.++.
T Consensus         5 ~v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----n~~~~a~   78 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP----QDSRIFL   78 (84)
T ss_dssp             CEEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT----TTCEEEE
T ss_pred             EEEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC----CEEEEEE
Confidence            4567899999999998 55 88899999999988777777766543  369999999999999999984    4456667


Q ss_pred             EEEEe
Q psy17058        268 IHVLT  272 (471)
Q Consensus       268 l~V~~  272 (471)
                      |.|..
T Consensus        79 l~V~e   83 (84)
T 2lu7_A           79 VSVEE   83 (84)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            77753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=2e-11  Score=115.06  Aligned_cols=103  Identities=25%  Similarity=0.406  Sum_probs=67.9

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC----CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM  264 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  264 (471)
                      ....+.+|+.++|.|.+ .+ |.+.++|+++++.+....    ++.+  .+++|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus       254 ~~v~v~~G~~~~l~C~~-~g-p~p~i~W~~~~~~~~~~~~~~~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~  329 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDT-KQ-QGMTKVWVSPSNEQVLSQGSNGSVSV--RNGDLFFKKVQVEDGGVYTCYAMGETFNETL  329 (361)
T ss_dssp             CCCEEETTCCEEECCCC-SS-TTCEEEEECTTSCBCCSCCSSSSEEE--ETTEEEESSCCTTSCEEEEEEEECSSCEEEE
T ss_pred             cCceecCCCeEEEEeEe-eC-CCCeEEEEeCCCeeEeecccCCceEe--ecCeEEEeecCcccCEEEEEEEecCCCccEE
Confidence            34578899999999999 66 889999999877643322    3444  4778999999999999999999999999888


Q ss_pred             EEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEE
Q psy17058        265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS  307 (471)
Q Consensus       265 ~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~  307 (471)
                      .+.|.|...+            .+|+.+.|.|.+.|.|.|.|+
T Consensus       330 ~~~l~V~~~~------------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          330 SVELKVYNFT------------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEESSC------------CC-------------------
T ss_pred             EEEEEEEeee------------ccCCceEEEEEeCCCCCCccc
Confidence            8888885422            568899999999999998763

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-11  Score=89.09  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             CeeeecCCCceeE--EcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec--eEEEeccCCCCCeEEEEEEE
Q psy17058        181 PRIRIHPNASQTF--IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAE  256 (471)
Q Consensus       181 p~~~~~~~~~~~v--~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~  256 (471)
                      |...+.|.....+  .+|+.++|.|.+ .+ |.+.++|+|+|..+..+.++.+...+.  .|.|.+++.+|+|.|+|.|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEV-DR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            3334455544433  589999999998 44 778999999999988887777766543  69999999999999999995


Q ss_pred             cCCCceEEEEEEE
Q psy17058        257 NSAGKEVMNAYIH  269 (471)
Q Consensus       257 ~~~~~~~~~~~l~  269 (471)
                      |    .+.++.|.
T Consensus        82 n----~~~~~~lt   90 (91)
T 2lvc_A           82 D----ECAYFTVT   90 (91)
T ss_dssp             S----CEEEEEEE
T ss_pred             c----eEEEEEEE
Confidence            4    34555554

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.26  E-value=9.6e-12  Score=92.61  Aligned_cols=82  Identities=24%  Similarity=0.398  Sum_probs=67.2

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      +....+.+|+++.|.|.+.+  .|.+.|++++..+......  ......|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   83 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRT--VLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMV   83 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSE--EEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceE--EEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEE
Confidence            34567889999999999986  5799999999887543321  1234689999999999999999999999999999999


Q ss_pred             EEecCC
Q psy17058        361 AVEHRP  366 (471)
Q Consensus       361 ~V~~~p  366 (471)
                      .|.+++
T Consensus        84 ~V~~~~   89 (95)
T 4hwu_A           84 NVTDAA   89 (95)
T ss_dssp             EECCC-
T ss_pred             EEeCCc
Confidence            998764

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.3e-11  Score=92.07  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      ..|........+..+.+|+.++|.|.+ .+.|. +.+.|+|++..+....++.+...+  ..|.|.+++.+|+|.|+|.+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v-~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   84 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVL-SHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV   84 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEEC-SSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEE-cCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE
Confidence            344444445567789999999999999 55553 589999999987777777766533  37999999999999999998


Q ss_pred             EcCCCceEEEEEEEEEeCCc
Q psy17058        256 ENSAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~~~p~  275 (471)
                          +....++.|.|..+|.
T Consensus        85 ----~~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           85 ----RGLTSKASLIVRERSG  100 (104)
T ss_dssp             ----TTEEEEECEEEECCCS
T ss_pred             ----CCeeEEEEEEEeCCCc
Confidence                4456788899987764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.25  E-value=2.5e-11  Score=93.91  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---------eeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      .+..+.|.|.+ .|.|.+.++|+|||..+....+....         ...+.|.|.++...|+|.|+|.|.|..|..+.+
T Consensus        14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            57789999999 89999999999999887665543322         124679999999999999999999999999999


Q ss_pred             EEEEEEeCCce
Q psy17058        266 AYIHVLTLPAV  276 (471)
Q Consensus       266 ~~l~V~~~p~~  276 (471)
                      +.|.|...|..
T Consensus        93 ~~l~v~~~P~~  103 (126)
T 1he7_A           93 IMAAFMDNPFE  103 (126)
T ss_dssp             EEECCCSCTTS
T ss_pred             EEEEEEcCCCC
Confidence            99988877643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.24  E-value=2.6e-11  Score=99.22  Aligned_cols=101  Identities=24%  Similarity=0.339  Sum_probs=77.1

Q ss_pred             ccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe---eeceEEEeccCCCCCeEEEEE
Q psy17058        178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       178 ~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  254 (471)
                      ..+|.+...+ ....+.+|+.++|.|.+ .+.|.+.+.|+|++..+....++.+..   ....|.|.+++..|.|.|+|.
T Consensus        39 ~~~P~~~~~~-~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           39 HVKPYFTKTI-LDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             CEEEEEEECC-CCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEccC-CcEEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence            3456555544 45678999999999999 788999999999998766665555542   134799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEEeCCceeeCC
Q psy17058        255 AENSAGKEVMNAYIHVLTLPAVTITP  280 (471)
Q Consensus       255 ~~~~~~~~~~~~~l~V~~~p~~~~~~  280 (471)
                      +.|..|.....+.|.|..+|.+...+
T Consensus       117 a~N~~G~~~~~~~l~V~~~p~~~~~~  142 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVETMGKEGEGE  142 (154)
T ss_dssp             EEETTEEEEEEEEEEEECC-------
T ss_pred             EEECCCeEEEEEEEEEeCcCcCCCCC
Confidence            99999998889999999887765443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3e-12  Score=96.63  Aligned_cols=82  Identities=21%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             CCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       280 ~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +.....+.+|+.+.|.|.+.+.| +.+.|++++..+....      ..........|.|.+++.+|+|.|+|.|.|    
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----   88 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----   88 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS----
T ss_pred             cCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC----
Confidence            34467899999999999999888 8999999998876432      222334456899999999999999999987    


Q ss_pred             eEEEEEEEEecCC
Q psy17058        354 EEKVITVAVEHRP  366 (471)
Q Consensus       354 ~~~~~~l~V~~~p  366 (471)
                      ...++.|.|..+|
T Consensus        89 ~~~~~~l~V~~~P  101 (101)
T 2edk_A           89 GQCEAELIVEEKQ  101 (101)
T ss_dssp             CEECCBEEEECCC
T ss_pred             CcEEEEEEEeCCC
Confidence            4455667776653

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.24  E-value=4.5e-11  Score=91.21  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=69.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc-CCC---------ccc-ccccCceeEEEEeecCCCCCe
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP-FDR---------NLE-RDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~-~~~---------~~~-~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      .|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++.. +..         ... ........+|.|.+++.+|+|
T Consensus         6 ~p~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            6 SQGQFPLT-QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             --CCCEEC-CCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             CCCccccC-CeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            44444443 357889999999999999999899999997752 110         000 011125678999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        342 QYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       342 ~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      .|+|.|.| .|..+..+.|.|..+|
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999 8888999999998754

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.24  E-value=6.8e-11  Score=87.28  Aligned_cols=82  Identities=22%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      ..+..+..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+....++.+...+  ..|.|.+++.+|+|.|+|.+.|    .
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n----~   82 (93)
T 1waa_A            9 EKPLYGVEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN----T   82 (93)
T ss_dssp             EECCCCEEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT----E
T ss_pred             eccCcceEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC----C
Confidence            444556789999999999999 44 45789999999887777777766543  3799999999999999999965    3


Q ss_pred             EEEEEEEEEe
Q psy17058        263 VMNAYIHVLT  272 (471)
Q Consensus       263 ~~~~~l~V~~  272 (471)
                      ..++.|.|..
T Consensus        83 ~~sa~L~V~~   92 (93)
T 1waa_A           83 KSAANLKVKE   92 (93)
T ss_dssp             EEEEEEEEEC
T ss_pred             cEEEEEEEEc
Confidence            4566777653

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.5e-11  Score=93.06  Aligned_cols=91  Identities=13%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      ..|.....+.....+.+|+++.|.|.+.+.|.+ .+.|+|++..+....+  ........+|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence            344333444556789999999999999987754 8999999998864322  2223345689999999999999999984


Q ss_pred             cCCCceEEEEEEEEecCC
Q psy17058        349 NSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       349 n~~g~~~~~~~l~V~~~p  366 (471)
                      |    ...++.|.|..+|
T Consensus        86 ~----~~~~a~L~V~~~p   99 (104)
T 2eny_A           86 G----LTSKASLIVRERS   99 (104)
T ss_dssp             T----EEEEECEEEECCC
T ss_pred             C----eeEEEEEEEeCCC
Confidence            4    6788899998876

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=95.29  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=75.3

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe---eeceEEEeccCCCCCeEEEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIA  255 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~  255 (471)
                      .+|...........+.+|+.++|.|.+ .+.|.+.+.|+|++..+....++.+..   ....|.|.+++.+|+|.|+|.+
T Consensus        11 ~~p~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           11 GRRVHIIEDLEDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             SSCCEEEECCCEEEEETTSCEECCCEE-ESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred             CCCCeEeccCccEEEeCCCcEEEEEEE-cCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE
Confidence            444334444566788999999999999 688888999999998766665555441   2347999999999999999995


Q ss_pred             EcCCCceEEEEEEEEEeCCceeeCC
Q psy17058        256 ENSAGKEVMNAYIHVLTLPAVTITP  280 (471)
Q Consensus       256 ~~~~~~~~~~~~l~V~~~p~~~~~~  280 (471)
                          +.....+.|.|..+|.+...+
T Consensus        90 ----g~~~~~~~L~V~~~p~~~~~~  110 (115)
T 2cr6_A           90 ----GDQRASAALRVTEKPSVFSRS  110 (115)
T ss_dssp             ----TTEECCEEEEEECCSSCCSSS
T ss_pred             ----CCeeEEEEEEEECCCceeccC
Confidence                667777899999888765544

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.23  E-value=1.1e-10  Score=87.63  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEc
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAEN  257 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~  257 (471)
                      +|.+...+.....+.+|+.++|.|.+ . .|.+.+.|+|++..+....++.+...+  ..|.|.++..+|+|.|+|.+  
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVEL-A-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEE-S-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEe-c-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            45555554444567899999999999 4 688899999999887766676665533  36999999999999999999  


Q ss_pred             CCCceEEEEEEEEEeCCc
Q psy17058        258 SAGKEVMNAYIHVLTLPA  275 (471)
Q Consensus       258 ~~~~~~~~~~l~V~~~p~  275 (471)
                        +....++.|.|..+|.
T Consensus        83 --g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             --TTEEEEEEEEECCSCC
T ss_pred             --CCceEEEEEEEecCCC
Confidence              6677788888887663

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=92.84  Aligned_cols=87  Identities=24%  Similarity=0.353  Sum_probs=67.7

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      |.+... .....+.+|+++.|.|.+.+ |.+.+.|++++..+.....  .........|.|.+++.+|+|.|+|.|.|  
T Consensus         9 p~~~~~-~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--   84 (103)
T 2edf_A            9 AAIIKP-LEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--   84 (103)
T ss_dssp             CCEEEC-CCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--
T ss_pred             cEEEec-CCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--
Confidence            334333 34578999999999999996 7789999999988754322  12233456899999999999999999999  


Q ss_pred             CceEEEEEEEEecCC
Q psy17058        352 GTEEKVITVAVEHRP  366 (471)
Q Consensus       352 g~~~~~~~l~V~~~p  366 (471)
                        ...++.|.|..+|
T Consensus        85 --~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 --SKSTASLHVEEKA   97 (103)
T ss_dssp             --CEEEEEEEECCCS
T ss_pred             --CCcEEEEEEeCCC
Confidence              4677888888765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=8.5e-11  Score=90.57  Aligned_cols=96  Identities=18%  Similarity=0.301  Sum_probs=74.6

Q ss_pred             cCCeeeecCCC--ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEE
Q psy17058        179 EMPRIRIHPNA--SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCI  254 (471)
Q Consensus       179 ~~p~~~~~~~~--~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~  254 (471)
                      .+|.....+..  ...+.+|+.+.|.|.+ . .|.+.+.|+|++..+....++.+...+  ..|.|.+++.+|+|.|+|.
T Consensus         9 ~pp~~~~~p~~~~~~~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (113)
T 2cpc_A            9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE   86 (113)
T ss_dssp             SCSCSEEESCSCEEEEEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             cCCcEEEccCCceeEEEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence            44554444433  2457799999999999 4 788899999999877666666665533  5799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEEeCCceeeCC
Q psy17058        255 AENSAGKEVMNAYIHVLTLPAVTITP  280 (471)
Q Consensus       255 ~~~~~~~~~~~~~l~V~~~p~~~~~~  280 (471)
                      +.|    .+..+.|.|..+|...+.+
T Consensus        87 a~n----~~~~~~l~V~~~p~~~~~p  108 (113)
T 2cpc_A           87 IDD----ESASFTVTVTEPPVRIIYS  108 (113)
T ss_dssp             SSS----CEEEEEEEEECCCCCCCCC
T ss_pred             Eec----CcEEEEEEEecCCchhccC
Confidence            987    5677889999888766554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=4.8e-11  Score=91.34  Aligned_cols=92  Identities=15%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCC--CCCCeEEEEeCCCCCCc----CCCceEEe--------eeceEEEeccCCC
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAG--EPSPTQTWIRPDNDGKF----GPDVEVYQ--------ELGVLRFNNIATG  246 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~--~p~~~v~W~~~~~~~~~----~~~~~~~~--------~~~~l~i~~~~~~  246 (471)
                      +.+.+..+.+..+.+|+.++|.|.+...  .|.+.|+|||+... ..    ..++.+..        ....|.|.++...
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWL-ELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTC-CCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEe-ccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            3334444567789999999999998322  37899999996421 11    12333321        1467999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEEeC
Q psy17058        247 DEGKYTCIAENSAGKEVMNAYIHVLTL  273 (471)
Q Consensus       247 d~G~Y~C~~~~~~~~~~~~~~l~V~~~  273 (471)
                      |+|.|+|++.|..+..+..+.|.|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999998763

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.22  E-value=6.6e-11  Score=98.31  Aligned_cols=162  Identities=14%  Similarity=0.224  Sum_probs=99.3

Q ss_pred             CCcEEEcCCceeecCCCcEEEEeeCCCCCCe-EEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~-v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      +..+.+.|+...|..|+++.|.|..+-+.+. +.|.-.-+....+.......|.|.+++  |.|.|.|.+.-.... ...
T Consensus         2 ~f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~-~~~   78 (192)
T 1zxq_A            2 VFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQ-ESM   78 (192)
T ss_dssp             CCCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEE-EEE
T ss_pred             CcEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcc-eEE
Confidence            4568889999999999999999993334443 455322011100001122579999999  789999999865433 444


Q ss_pred             eEEEEEeeccCCe-eeecCCCceeEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcCC----CceEEeeeceEEEec
Q psy17058        170 YASIQVDKREMPR-IRIHPNASQTFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFGP----DVEVYQELGVLRFNN  242 (471)
Q Consensus       170 ~~~l~v~~~~~p~-~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~----~~~~~~~~~~l~i~~  242 (471)
                      .+.|.|.  .+|. +.+.+. ...+.+|+.++|.|.+.++.|..  ++.|++++..+....    .........++.+ .
T Consensus        79 ~~~itVy--~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~~~-~  154 (192)
T 1zxq_A           79 NSNVSVY--QPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNS-T  154 (192)
T ss_dssp             EEEEEEC--BCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEE-E
T ss_pred             EEEEEEE--eCCCCceEccC-CccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEEEE-e
Confidence            5555554  4443 333321 22577999999999997778876  489999776542211    0000010112333 4


Q ss_pred             cCCCCCe-EEEEEEEcCC
Q psy17058        243 IATGDEG-KYTCIAENSA  259 (471)
Q Consensus       243 ~~~~d~G-~Y~C~~~~~~  259 (471)
                      +.++|.| .|+|+|....
T Consensus       155 ~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          155 ADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             CCGGGGGCEEEEEEEEEC
T ss_pred             cchhhCCceEEEEEEecC
Confidence            5555666 9999998655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	471
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-13
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-13
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	8e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-12
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	7e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	7e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	0.003
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	0.003
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	0.002
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	6e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	6e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	6e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	7e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	3e-06
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.002
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	4e-06
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.003
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	9e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	2e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	7e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-05
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.002
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	3e-05
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.002
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.003
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	5e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	8e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	2e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	0.003
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	3e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.002
d2ij0c1	118	b.1.1.1 (C:1-117) T-cell antigen receptor {Human (	4e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	5e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.002
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	6e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	7e-04
d1nkra1	96	b.1.1.4 (A:6-101) Killer cell inhibitory receptor	8e-04
d1ucta1	99	b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD8	0.001
d1j8hd1	115	b.1.1.1 (D:1-117) T-cell antigen receptor {Human (	0.001
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.001
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.002
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	0.001
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d2aq2a1	110	b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (	0.001
d1i9ea_	115	b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus m	0.002
d1fo0b_	112	b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus m	0.002
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	0.002
d1sq2n_	112	b.1.1.1 (N:) Novel antigen receptor (against lysoz	0.003
d1ucta2	96	b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (C	0.003
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	0.004
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P     P + + V+ G+ +T+ C+ TG P P V W     P           + +   I 
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG---RATVTDSGLVIK 59

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAV 362
            V+  D G Y C   N  G +     V V
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.1 bits (137), Expect = 4e-11
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P+    P        G    I C +  G P+P   W         G           L  
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG---RATVTDSGLVI 58

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
             +  GD+G Y C A N  G +     + V
Sbjct: 59  KGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.7 bits (123), Expect = 3e-09
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 94  VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-IAGETLIINGITKAD 151
            Q   +     +G  VTI CK +  P+  + WS + +        +    L+I G+   D
Sbjct: 6   EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGD 65

Query: 152 EGVYICSIQNAQGNVFQDYASIQV 175
           +G Y C   N  G+ + +   +QV
Sbjct: 66  KGYYGCRATNEHGDKYFE-TLVQV 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF---DRNLERDELTSRAVYTIASVRESDA 340
            +V     +   C A G PMPT+ W+K    F    R              + SV  SD 
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 74

Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
           G Y C+ +N  G+      + V
Sbjct: 75  GNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 8e-11
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATG 246
                  +    +C    G P PT  W++   + K    +  Y+   +   L   ++   
Sbjct: 14  LHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 72

Query: 247 DEGKYTCIAENSAGKEVMNAYIHVL 271
           D+G YTC+ EN  G      ++ V+
Sbjct: 73  DKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 92  NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
           N  ++  R  + P  + V   C    +P  T++W K+ +E    + I G        +LI
Sbjct: 6   NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 65

Query: 144 INGITKADEGVYICSIQNAQGNV 166
           +  +  +D+G Y C ++N  G++
Sbjct: 66  MESVVPSDKGNYTCVVENEYGSI 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 4e-14
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FDRNLERDELTSRAVYT 331
           P +   P +   VR GE + L  + TG    T +W+K+        +++ +   + +  T
Sbjct: 1   PQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 59

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
           I + R+   G Y  + +N  G+ +  + + V  +P+
Sbjct: 60  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VL 238
           P+I   P   Q    G+  ++   +  G    T TW++     +    ++V        L
Sbjct: 1   PQIIQFPE-DQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
                     G YT + EN  G       + V+  P
Sbjct: 59  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA------GETLIINGITKA 150
           P  Q    G  V +  K +     T  W K  ++      +       G  L I    + 
Sbjct: 7   PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 66

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
             G Y   ++N  G      A + +   + P
Sbjct: 67  HCGCYTLLVENKLG---SRQAQVNLTVVDKP 94

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI--ASV 335
           +T    ++V  GE     C+  G P+PTV+W++       +      T++   T   +SV
Sbjct: 3   LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 62

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVE 363
           + SD G Y  + +NS G +E   T+ ++
Sbjct: 63  QASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 3e-08
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF- 240
           RI   P  S T   G+ A   C  + GEP PT TW+R           +V        F 
Sbjct: 1   RILTKPR-SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 58

Query: 241 -NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            +++   DEG Y+ + ENS GK+     + +
Sbjct: 59  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE------TLIINGITKA 150
           PR  +  EG      C    +P  T+ W +  Q                 T  I+ +  +
Sbjct: 6   PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 65

Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKRE 179
           DEG Y   ++N++G   +  A   +  ++
Sbjct: 66  DEGNYSVVVENSEG---KQEAEFTLTIQK 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P++            G+ +TLEC A G P+P + W K                  +  I 
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS----EPLLHIQ 60

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           +V   D G Y+C  +N  G +     + + 
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.8 bits (136), Expect = 5e-11
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P I+    A    + G    ++C    G P P   W + D         +      +L  
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTS----KWLSSEPLLHI 59

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            N+   DEG Y C AEN  G++     I +
Sbjct: 60  QNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.5 bits (112), Expect = 9e-08
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYI 156
           P    A  G  VT+EC    +P   IKW K +  Q    + +   L I  +   DEG Y 
Sbjct: 12  PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 71

Query: 157 CSIQNAQGNV 166
           C  +N +G  
Sbjct: 72  CEAENIKGRD 81

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (150), Expect = 8e-13
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR--NLERDELTSRAVYT 331
           P   + P     V  G+     C       P V+W K      +     +    +    T
Sbjct: 2   PRFIVKPYG-TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
           I  V+  D G+Y    KNS GT+E+++ + V    E
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (123), Expect = 4e-09
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--YQELGVL 238
           PR  + P        G  A+  C +      P  TW + D + K               L
Sbjct: 2   PRFIVKP-YGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 59

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
             N +   D+G+YT  A+NS G +    +++V    
Sbjct: 60  TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGIT 148
           V P      EG      C+        + W KD++E                 L IN + 
Sbjct: 6   VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVK 65

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
             D+G Y    +N+ G   ++   + V +   P
Sbjct: 66  GDDKGEYTVRAKNSYGTK-EEIVFLNVTRHSEP 97

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAP----FDRNLERDELTSRAVYTIASVRESD 339
           ++V  G+P+ L C   G   P + WVK  A         +   E       ++ SV  SD
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 340 AGQYKCIGKNSAGTEE-KVITVAVE 363
           AG+Y C  ++   TE  + + + VE
Sbjct: 66  AGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGIT 148
           P + +  +G  V + C         I+W KD       + +            L +  + 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQV 175
           ++D G Y C +++           + V
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIAT 245
             T   G    + C +E G   P   W++      N  +    V     +G L   ++  
Sbjct: 5   KLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 246 GDEGKYTCIAENSAGKEV-MNAYIHV 270
            D G+Y C  E+    E+    ++ V
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTV 89

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 274 PAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSW----VKYIAPFDRNLERDELTSRA 328
           P V    S    +   G+ +TL C+A G P PT+SW           + + +       +
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
             TI +V ++D  +Y CI +N AG ++  I + V  +
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 181 PRIRIHPN-ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQEL 235
           P ++   +  + T  +G    + C  + G P PT +W +      N+ +         + 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
             L   N+   DE +Y CIAEN AG++  + ++ V 
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLI 143
           + + +    +A  G  VT+ C     P  T+ W+KD +                    L 
Sbjct: 7   QARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT 66

Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
           I  + K DE  Y+C  +N  G   +  ASI + 
Sbjct: 67  IRNVDKNDEAEYVCIAENKAG---EQDASIHLK 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 3/91 (3%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIAS 334
               +  +V  G          G+P P   W      I   DR        +     I  
Sbjct: 8   FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 67

Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
           V   D+        N AG       + V+ +
Sbjct: 68  VTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---L 235
           E P+I      SQT   G  A  +  +  G+P P   W +     +    +  Y     +
Sbjct: 3   EAPKIFERIQ-SQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
             L   ++   D       A N AG+   +A++ V
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 88  SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGET----- 141
           S +A ++    + Q+  +GS      +    P    +W K+  +    + I         
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 142 --LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR 178
             L+I  +T  D    +    N  G     +A + V  +
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGET-SSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
           S+E P+I  R   QTV  G  A+ R   +G       W 
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWY 39

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 4e-12
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR-NLERDELTSRAVYTI 332
                 P+     + GE   + C+      PT+ W             R  + S     I
Sbjct: 2   LMFKNAPTP-QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
             ++++D G Y+C G+  A  E     + V
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-VYQELGVLRFNNIATGDE 248
            Q F  G+ A I C +      PT  W     D     DV  +      L+   I   DE
Sbjct: 10  PQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 68

Query: 249 GKYTCIAENSAGKEVMNAYIHV 270
           G Y C     A  E+    I V
Sbjct: 69  GTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-----TLIINGIT 148
           +  P  Q   EG    I C   +    TI W    ++ +    +         L I GI 
Sbjct: 5   KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK 64

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQV 175
           K DEG Y C  +        ++  IQV
Sbjct: 65  KTDEGTYRCEGRILARGEI-NFKDIQV 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVY 330
           P  T T  + + V  G     +C+  G P P V W K   P           +       
Sbjct: 9   PYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           TI+ V   D  +Y C   NS G       + VE
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGV 237
           P            + G  A   C +E G P P   W + DN  K     ++  +      
Sbjct: 9   PYFTKTIL-DMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
           L  + +   D+ KYTC A NS G+    A + V T+
Sbjct: 67  LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 102

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGET-------LIINGI 147
            T       EGS    +CK    P   + W KD+           +        L I+ +
Sbjct: 13  KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 72

Query: 148 TKADEGVYICSIQNAQGNV 166
              D+  Y C   N+ G  
Sbjct: 73  CGDDDAKYTCKAVNSLGEA 91

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE 337
           +          G  L   C A+G+P P V W++   P           S      + +  
Sbjct: 5   LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ--NRIEVSGGELRFSKLVL 62

Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVE 363
            D+G Y+C+ +N  GT      + V+
Sbjct: 63  EDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P             +G      CV   G+P P   W+R            +    G LRF
Sbjct: 2   PDWLDVIT-DTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQP--LASQNRIEVSGGELRF 57

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
           + +   D G Y C+AEN  G    +A + V
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGV 154
                A  GS +   C  S  P   ++W +D Q     N   ++G  L  + +   D G+
Sbjct: 8   ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGM 67

Query: 155 YICSIQNAQGNV 166
           Y C  +N  G V
Sbjct: 68  YQCVAENKHGTV 79

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---------------YIAPFDRN 318
           P +        S   G  +   C+      P + W+K               Y+      
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                     V  I +V   DAG+Y C+  NS G       + V
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD--NDGKFGPDVEVYQEL 235
           R  P ++    A+ + +VG   +  C +   +  P   WI+    N  K+GPD   Y ++
Sbjct: 2   RHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 236 -------------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
                         VL   N+   D G+YTC+A NS G    +A++ VL
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 20/89 (22%)

Query: 98  PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---------------- 140
           P   S   G  V   CK  +D    I+W K  ++        G                 
Sbjct: 12  PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 71

Query: 141 ---TLIINGITKADEGVYICSIQNAQGNV 166
               L I  +T  D G Y C   N+ G  
Sbjct: 72  EIEVLYIRNVTFEDAGEYTCLAGNSIGIS 100

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 4e-10
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
             VT+      SVRPG  +T  C A +  P  T+ W +     +  L    +    + TI
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR---LHNGKLPSRAMDFNGILTI 58

Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
            +V+ SDAG Y C G N    ++   T+ V+
Sbjct: 59  RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 9e-10
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
             + +    SQ+   G      C  ++  P+ T  W R  N       ++     G+L  
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---GILTI 58

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            N+   D G Y C   N    +   A +HV
Sbjct: 59  RNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 98  PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGV 154
            R QS   G+ VT  C   S  P+ T+ W++ +  +LP   +     L I  +  +D G 
Sbjct: 9   QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGT 68

Query: 155 YICSIQNAQGNVFQDYASIQV 175
           Y+C+  N      Q  A++ V
Sbjct: 69  YVCTGSNMFAMD-QGTATLHV 88

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI--ASV 335
           +T S  + ++ G    LE +  G P PT +W    +      E       +  +I   S 
Sbjct: 6   LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSA 65

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVE 363
           + +D+G YK   KN  G +E +  V V+
Sbjct: 66  KRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
           P+I            G   +++     G P PT TW   D+     P++ V  +     +
Sbjct: 3   PKILTASR-KIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            F +    D G Y    +N  G++     + V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 6e-09
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKYIAP-------FDRNLERDELT 325
             + I      S+  G+P  LEC        P V+W K              + + ++  
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVE 363
           S  +     V  +D G Y+C     +   E    T+ V 
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ------- 233
            ++ I   +  + + GD  +++C ++     P  TW + +       +            
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 234 ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVL 271
              +L F  +   D G Y C A   +   E  +  ++V 
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 16/99 (16%)

Query: 93  EVQV---TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM----------- 136
           +VQ+      + S   G    +EC          + W K N                   
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 137 IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           I+   L    +   D G Y CS       +     ++ V
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 100

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 274 PAVTITPSE--YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVY 330
           P     P+   +      E +TL C A   P  T  W           + R  L +  + 
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64

Query: 331 TIASVRESDAGQYKCIGKNSAGT 353
               V+  DAG Y+C+  N+ GT
Sbjct: 65  ISNPVKAKDAGSYQCVATNARGT 87

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 181 PRIRIHPNASQTFIVG---DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-G 236
           P     P A   F  G   ++  + C      P  T  W     + K GPD         
Sbjct: 5   PVFEEQP-AHTLFPEGSAEEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRLVAGD 62

Query: 237 VLRFNNIATGDEGKYTCIAENSAGK 261
           ++  N +   D G Y C+A N+ G 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGT 87

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 98  PRQQSAPEGSQ---VTIECK-SNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGIT 148
           P     PEGS    VT+ C+   +P AT +W  +  E          ++AG+ +I N + 
Sbjct: 11  PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVK 70

Query: 149 KADEGVYICSIQNAQGNVFQDYASIQ 174
             D G Y C   NA+G V    AS++
Sbjct: 71  AKDAGSYQCVATNARGTVVSREASLR 96

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 94  VQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE--------TLI 143
           + VT      +A  G +V +EC+ ++  A +KW K+ +E +P                LI
Sbjct: 1   IMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 144 INGITKADEGVYICSIQNAQG 164
           I G TKAD   Y       Q 
Sbjct: 61  IEGATKADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 276 VTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---- 330
           + +T   E  +   GE + LECE +      V W K         +              
Sbjct: 1   IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59

Query: 331 TIASVRESDAGQYKCIGKNSAGT-----EEK 356
            I    ++DA +Y  +      +     + K
Sbjct: 60  IIEGATKADAAEYSVMTTGGQSSAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVYQELGVLRFNNIAT 245
             T   G+R +++C  E  E      W +   +   GP     + V  +  +L       
Sbjct: 9   DTTAYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66

Query: 246 GDEGKYTCIAENSAGK 261
            D  +Y+ +       
Sbjct: 67  ADAAEYSVMTTGGQSS 82

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD---------RNLERDE 323
           P    T +   S   G    L C    G P    +W K                N     
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
             +        +  SD G+Y C  +N  GT      V +E
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE------ 234
           P  +   N   +  +G+RA + C  + G P    TW +        P             
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 235 ---LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
               G L F+ ++  D G+Y+C A N  G  + +  + +
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 16/102 (15%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN-------------MI 137
                    SA  G++  + C      P +   W KD                       
Sbjct: 4   SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 63

Query: 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
               L+ + ++ +D G Y C  +N  G       +++++  E
Sbjct: 64  TTGELVFDPLSASDTGEYSCEARNGYGTP-MTSNAVRMEAVE 104

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 12/95 (12%)

Query: 284 VSVRPGEPL---TLECEATGRPMPTVSWVKYIAPFD---------RNLERDELTSRAVYT 331
           V +     +    +     G+P P++ W+   +  +              +E        
Sbjct: 7   VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66

Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
           +      + G Y  +  N  G     I  A    P
Sbjct: 67  LNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDV---------EVYQELGVLRFNNIATGDEGKY 251
           I   ++ G+P+P+  W+   +       +               G LR N     + G Y
Sbjct: 20  IPFSVD-GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78

Query: 252 TCIAENSAGKEVMNAYIHVLTLP 274
           T +A N  G+   +     +  P
Sbjct: 79  TLLAANPFGQASASIMAAFMDNP 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 17/95 (17%)

Query: 101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------------AGETLIING 146
            +A E     I       P+ +++W  +       + I                 L +N 
Sbjct: 10  HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 69

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
            T  + G Y     N  G   Q  ASI     + P
Sbjct: 70  PTHVNNGNYTLLAANPFG---QASASIMAAFMDNP 101

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 32/122 (26%)

Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW----------------------- 308
            L      P   + V  G  L L+   +G P PTV W                       
Sbjct: 8   HLDCPGRIPDT-IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTG 66

Query: 309 --------VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
                    K +   +  +  +    R+++T+    + D G Y    KN  G ++  +TV
Sbjct: 67  DSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

Query: 361 AV 362
            V
Sbjct: 127 KV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 36/130 (27%)

Query: 177 KREMPRIRIHPNA----SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---- 228
           ++E P+I +        +   + G++  +   +  G+P+PT  W +    G   P     
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAP 59

Query: 229 ---------------------------VEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
                                      VE  ++  +         DEG YT   +N  G+
Sbjct: 60  DAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 119

Query: 262 EVMNAYIHVL 271
           + +N  + V+
Sbjct: 120 DQVNLTVKVI 129

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 14/104 (13%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVK-----------YIAPFDRNL 319
             + +   +   V  G  +T      G  +   P V W K                  + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           +R          I   + +  G Y+C        +     + V 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/94 (11%), Positives = 16/94 (17%), Gaps = 13/94 (13%)

Query: 190 SQTFIVGDRADIQCVLEA--GEPSPTQTWIRPDNDGKFGPD-----------VEVYQELG 236
                VG        +        P   W +                           L 
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            L   +      G Y C        +  N  + V
Sbjct: 73  ELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 22/101 (21%), Positives = 28/101 (27%), Gaps = 11/101 (10%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD----------RNLERD 322
           P    T S   SV  G    L C    G P    SW K                 N    
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
                       V   D+G+Y C  +N  GT  +     ++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----------VE 230
           P          +  +G+RA + C    G P    +W +                      
Sbjct: 3   PSKPTIS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
           +  + G L F+ +   D G+Y C A+N  G  + +   H+
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 17/103 (16%)

Query: 94  VQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGETL--------- 142
                   S   G++  + C      P +   W KD    L  +                
Sbjct: 5   KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 64

Query: 143 -----IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
                I + +T  D G Y C  QN  G       +  +D  E+
Sbjct: 65  KSGDLIFDPVTAFDSGEYYCQAQNGYGTA-MRSEAAHMDAVEL 106

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT-- 331
           P +   P+E V  R   P  LEC   G         K         E +    +   +  
Sbjct: 3   PVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 332 IASVRESDAGQYKCIGKNSAGTEE-KVITV 360
               + SD G Y+C  +  AG    +VI+ 
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRVISF 91

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI------AGETLIING 146
           ++  P +    E +   +EC    +        K + +                +L+   
Sbjct: 5   LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLR 64

Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQV 175
              +DEG Y C  +   G       S + 
Sbjct: 65  PQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLR 239
           P ++  P A   F   +   ++C++E  +     +W +      +       ++  G L 
Sbjct: 3   PVLKDQP-AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNA 266
           F      DEG Y C AE  AG      
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLERDELTSRAVYTIASVR 336
           S+ +  + G+   + C     PM   ++ K         +  + R   TS       +  
Sbjct: 10  SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 69

Query: 337 ESDAGQYKCIGKNSAGTEEKV-ITVAV 362
             D G Y C   N  G  +K  + + V
Sbjct: 70  PEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 95  QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIIN 145
           Q   +   A  G    I C   ++P     + K+ ++               +G+ L+  
Sbjct: 7   QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK 66

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV 175
                DEGVY C + N  G   +    + V
Sbjct: 67  TTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIAT 245
                 GD   I C+     P     + +       + +             L F     
Sbjct: 12  DMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP 70

Query: 246 GDEGKYTCIAENSAGKEVMN-AYIHVL 271
            DEG YTC  +N  GK   +   + V+
Sbjct: 71  EDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 6e-08
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 7/87 (8%)

Query: 288 PGEPLTLECEATGRPMPTVSWVKYIAPFD-------RNLERDELTSRAVYTIASVRESDA 340
                 +     G P P + W    A  +       +    +         + +    + 
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 341 GQYKCIGKNSAGTEEKVITVAVEHRPE 367
           G Y  I KN  G +EK I+      P 
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 201 IQCVLEAGEPSPTQTWIR-------PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
           I   ++ G P P   W                       +  G L+ +N    + G YT 
Sbjct: 21  IPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL 79

Query: 254 IAENSAGKEVMNAYIHVLTLPAV 276
           IA+N  GK+      H +  P +
Sbjct: 80  IAKNEYGKDEKQISAHFMGWPGI 102

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
            +       T  C+A G P+P +  +K                       +V     G Y
Sbjct: 14  WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------GESVTVTRDLEGTY 62

Query: 344 KCIGKNSAGTEEKVITVAVE 363
            C  +++ G   + +TV V 
Sbjct: 63  LCRARSTQGEVTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 97  TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVY 155
            P   + PE SQ T  C++  +P   +K  KD    LP             +T+  EG Y
Sbjct: 10  CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------SVTVTRDLEGTY 62

Query: 156 ICSIQNAQGNV 166
           +C  ++ QG V
Sbjct: 63  LCRARSTQGEV 73

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 13/92 (14%)

Query: 181 PRI-RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
           PR+       + T+    +    C    G P P    ++         +           
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGES---------- 51

Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
              +    EG Y C A ++ G+      ++VL
Sbjct: 52  -VTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG---RPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
             V + P        G+ LTL C+  G   R   TV  ++      R     E  +    
Sbjct: 5   ERVELAPLP-SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGE-PAEVTT 62

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
           T+   R+    Q+ C  +     +   +     
Sbjct: 63  TVLVRRDHHGAQFSCRTELDLRPQGLELFENTS 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLR 239
            R+ + P       VG +  ++C +E G P    T +    + +   +  V +       
Sbjct: 5   ERVELAP-LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTT 63

Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI 278
                     +++C  E     + +  + +      +  
Sbjct: 64  VLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT 102

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 86  YLSPQANEVQVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQE---QLPPNMIA 138
           Y +P+   V++ P     P G Q+T+ C+          T+   +  +E   +      A
Sbjct: 1   YWTPE--RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA 58

Query: 139 GETLIINGITKADEGVYICSIQNAQG 164
             T  +          + C  +    
Sbjct: 59  EVTTTVLVRRDHHGAQFSCRTELDLR 84

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 8e-08
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER------------ 321
           P +    +E + V  G  + L C  TG+      W    +  D +               
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 322 --DELTSRAVYTIASVRESDAG-QYKCIGKNSAGTEEKVITV 360
                T   V  I+ +        + C  KN+ G +   I +
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 14/107 (13%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVKYIAP-----------FDRNLERDE 323
           I   +  +V+ GE +T   +     +   PT+ W K                    ER  
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
                   I   +++ AG Y+C        +     + V       P
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 9/78 (11%), Positives = 17/78 (21%), Gaps = 2/78 (2%)

Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
            I+          ++          F     VY     ++         G Y C      
Sbjct: 34  TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT--FEMQIIKAKDNFAGNYRCEVTYKD 91

Query: 260 GKEVMNAYIHVLTLPAVT 277
             +  +  + V      T
Sbjct: 92  KFDSCSFDLEVHESTGTT 109

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-----DRNLERDELTSRAVYTIASVRES 338
           V V  G+  T +C A GR +                             A + + +  + 
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 70

Query: 339 DAGQYKCIGKNSAGT 353
           DAG+Y+C+ +   G 
Sbjct: 71  DAGKYRCMIRTEGGV 85

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 96  VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------NMIAGETLIIN 145
           +  +      G   T +C       A  +      +             +     +  + 
Sbjct: 6   LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 65

Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV 175
             TK D G Y C I+   G    +YA + V
Sbjct: 66  NTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 7/87 (8%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIA 244
           +     G  A  QC    G             D +  P          + +      N  
Sbjct: 10  NVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 68

Query: 245 TGDEGKYTCIAENSAGKEVMN-AYIHV 270
             D GKY C+     G  + N A + V
Sbjct: 69  KRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
           R  P   +      T + GD   + C     E + T  W+                    
Sbjct: 4   RRCPAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVL-RKPAAGSHPSRWAGMGRR 61

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEV 263
           L   ++   D G Y+C         V
Sbjct: 62  LLLRSVQLHDSGNYSCYRAGRPAGTV 87

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           PA  +     ++  PG+ +TL C                 P   +             + 
Sbjct: 7   PAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVI 358
           SV+  D+G Y C           ++
Sbjct: 66  SVQLHDSGNYSCYRAGRPAGTVHLL 90

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 89  PQANEVQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN---MIAGETLI 143
            +    +V     ++  G  VT+ C     + +AT+ W                 G  L+
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 144 INGITKADEGVYICSIQNAQG 164
           +  +   D G Y C       
Sbjct: 64  LRSVQLHDSGNYSCYRAGRPA 84

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIA----------PFDRNLER 321
           + +VT+  SE  V +    P+ L C  +G   P V W                   + E 
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                    T  SV   D G Y C+     G     + V +
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 25/111 (22%)

Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD--------------------- 316
           I P   +    G+   L C  +     T   V +                          
Sbjct: 6   IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 65

Query: 317 ----RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
                 L+      +    I +VR SD G Y C  ++ +  EE  + + VE
Sbjct: 66  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV--------------- 229
           I P      +VGD A++ C +  G+ +         +       +               
Sbjct: 6   IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 65

Query: 230 ---------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
                     + +    LR  N+   DEG YTC   + + +E     + V   P   I P
Sbjct: 66  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED-PFYWINP 124

Query: 281 SE 282
             
Sbjct: 125 GR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 33/153 (21%)

Query: 38  QF-VSAENHEVTVYEGGDAELKC--NTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEV 94
           QF V    H +    G +AEL C  +            + S  S ++             
Sbjct: 2   QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLY---------- 51

Query: 95  QVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
                              K  D     ++    +            L I  +  +DEG 
Sbjct: 52  ----------------RNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG 95

Query: 155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
           Y C  ++      Q+ A++++   + P   I+P
Sbjct: 96  YTCFFRDHSY---QEEAAVELKVED-PFYWINP 124

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWV---------KYIAPFDRNLERDELTSR 327
            I+ ++      GE   ++C     P P                   +       E    
Sbjct: 9   IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 68

Query: 328 AVYTIASV-RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
           +  TI+++ R      Y C   NS G++ ++I +  +     GP S
Sbjct: 69  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 114

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR------ 327
           P V    S    +  GE   L C++   P  T      I   +     +   SR      
Sbjct: 3   PRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 328 ---AVYTIASVRESD-AGQYKCIGKNSAGTEEKVITVAV 362
              +   I ++      GQY+C G +S G+++ +IT+ V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           PR++   + S+    G+ A + C  E+  P     W +  +               V   
Sbjct: 3   PRVKAVKS-SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 241 NNIAT---------GDEGKYTCIAENSAGKEVMNAYIHV 270
              +           D G+Y C   +S G +     + V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 6e-07
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 280 PSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDE--LTSRAVYTIASVR 336
               V     E     C         T++W K  +    + E+       +        +
Sbjct: 9   KIILV-SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 67

Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
             D+G Y C+ +NS+      I+       
Sbjct: 68  VEDSGHYYCVVRNSSYCLRIKISAKFVENE 97

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 7e-07
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV--EVYQ 233
            +RE   I             +     C L   E   T TW + D+      +    ++Q
Sbjct: 4   KEREEKII-------LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ 56

Query: 234 ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
               L F      D G Y C+  NS+    +      +
Sbjct: 57  HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 280 PSEYVSVRPGEPL---TLECEATGRPMPTVSWVKYIAPFDRN------LERDELTSRAVY 330
           P   VS+   E      +E    G P PT+ W+    P   +        ++   S    
Sbjct: 5   PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
                   + G Y  I KN  GT  + I       P   P+
Sbjct: 65  LFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP--FPV 103

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 201 IQCVLEAGEPSPTQTWIR------PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
           I+ V+  G P PT  W+                  E     G L FN     + G YT I
Sbjct: 22  IEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 80

Query: 255 AENSAGKEVMNAYIHVLTLP 274
           A+N  G        H L  P
Sbjct: 81  AKNPLGTANQTINGHFLKEP 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE---------- 323
            +V  T    V V   E + L C  +G   P V W          +  +           
Sbjct: 2   GSVY-TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
             S +  T +SV   D G+Y C+     G     +++ + 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP----------DNDGKFGPDVEVYQELG 236
             +       +   + C   +G  SP   W             ++         V     
Sbjct: 7   AQSDVQVPENESIKLTCT-YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
            + F+++   D G+YTC+     G+      IH+  L
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 94  VQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPN------------MIA 138
           V         PE   + + C     + P    K+ + +   L                 +
Sbjct: 4   VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
              +  + +T+ D G Y C +    G  + +  SI +
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGE-VSIHL 99

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---------VLRFN 241
           +T I G    + CVL    P P  TW +  +      DV  +                  
Sbjct: 12  KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 71

Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
                D  KY C A+N+A  E     +    +  VT   S Y
Sbjct: 72  KEDVSDIYKYVCTAKNAAVDE--EVVLVEYEIKGVTKDNSGY 111

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFDRNLER------D 322
           ++  PA T       +   G P  L+C        P ++W K ++  D N +        
Sbjct: 2   LIASPAKT----HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 57

Query: 323 ELTSRAVYTIASVRESDAGQ---YKCIGKNSAGTEEKVITVAV 362
                       V + D      Y C  KN+A  EE V+    
Sbjct: 58  TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE 100

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWV-----KYIAPFDRNLERDELTSRAV 329
           V I PS+   +  GE     C+         +SW      K      R          + 
Sbjct: 3   VDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 330 YTIASVRESDAGQYKCIGKNSAG-TEEKVITVAV 362
            TI +    DAG YKC+     G   E  + V +
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-----QELG 236
           ++ I P +     VG+     C +         +W  P+ +        +       +  
Sbjct: 2   QVDIVP-SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 60

Query: 237 VLRFNNIATGDEGKYTCIAENSAGKE 262
            L   N    D G Y C+     G +
Sbjct: 61  TLTIYNANIDDAGIYKCVVTAEDGTQ 86

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 93  EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQE---------QLPPNMIAGET 141
           +V + P Q     G      C+   +     I W   N E          +  N     T
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
           L I      D G+Y C +    G   +   ++++
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI- 332
            A          V  G  + L  E        V W+K       +  +    S       
Sbjct: 6   TAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64

Query: 333 --ASVRESDAGQYKCIGKNSAGT 353
             +    +D   Y+C+      +
Sbjct: 65  TISQCSLADDAAYQCVVGGEKCS 87

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-------AGETLIING 146
            +         +G ++ +  +  D  A +KW K+ QE              A  TL I+ 
Sbjct: 9   QKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQ 68

Query: 147 ITKADEGVYICSIQNAQG 164
            + AD+  Y C +   + 
Sbjct: 69  CSLADDAAYQCVVGGEKC 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 9/88 (10%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL 235
           D+++    +     +     G +  +    E  +      W++   + +      +++ +
Sbjct: 1   DEKKSTAFQKKLEPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSGSKYIFESI 58

Query: 236 G---VLRFNNIATGDEGKYTCIAENSAG 260
           G    L  +  +  D+  Y C+      
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKC 86

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 13/92 (14%)

Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE------------LTSRA 328
           S+ +       +T    +   P+  V W K           +              T   
Sbjct: 2   SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
             TI ++  SD  +Y+    N   T +  + V
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 16/85 (18%)

Query: 98  PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE----------------T 141
            +Q        VT    SN P   + W K   +                          +
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 142 LIINGITKADEGVYICSIQNAQGNV 166
           L I  +T +DE  Y     N    +
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITDTM 86

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 9e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
           +  TP      + G+ ++L C  TG   P  SW   I         +E T+ +  T+  V
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT-STLTMNPV 61

Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAV 362
              +   Y C     +   EK I V +
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEG 249
              F  G  A+++C            W   +   K             L   N++ GD G
Sbjct: 6   QHFFKHGGTAELKC--SQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 63

Query: 250 KYTCIAENSAGKEVMNAYI--HVLTLPAV 276
            Y C++E     + +   +  HVL +  V
Sbjct: 64  VYQCLSEERVKNKTVFQVVAKHVLEVKVV 92

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
            + G    L+C         V W            +  L  R    I ++ E D+G Y+C
Sbjct: 9   FKHGGTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQC 67

Query: 346 IGKNSAGTEEKVITVAV 362
           + +     +     VA 
Sbjct: 68  LSEERVKNKTVFQVVAK 84

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 97  TPRQQSAPEGSQVTIECKSNDPSATIKWSKDN----QEQLPPNMIAGETLIINGITKADE 152
           + RQ     G    ++C      A + W   N     E     ++  + L+I  +++ D 
Sbjct: 3   SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 62

Query: 153 GVYICSIQNAQGN 165
           GVY C  +    N
Sbjct: 63  GVYQCLSEERVKN 75

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDR--NLERDELTSRAV 329
           L   +    + V +  G  +   C      P  +  W+    P     +  R    +   
Sbjct: 3   LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62

Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVI 358
             IA    SD G Y C   +      K +
Sbjct: 63  LYIAKTEASDLGNYSCFATSHIDFITKSV 91

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 5/105 (4%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GV 237
           +               G      C      P+ +  W+  +       D   +     G 
Sbjct: 3   LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62

Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
           L        D G Y+C A +       + +     L   ++   +
Sbjct: 63  LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQL---SLAAED 104

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
           +P + +      SV  G+ + L C+  GR +    W+         + +         T+
Sbjct: 2   VPTLKVQVPN-ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60

Query: 333 ASV-RESDAGQYKCIGKNSAGTEEKVITVAV 362
           A+V  + +     C  +N  G  E  + V V
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
             V + P  + SV   + +TL+C+    P    +   +      +           Y I 
Sbjct: 6   AVVFLEPQ-WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-------YFID 57

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITV 360
           +   +D+G+Y+C    S  ++   + V
Sbjct: 58  AATVNDSGEYRCQTNLSTLSDPVQLEV 84

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 101 QSAPEGSQVTIEC-------KSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKA 150
           Q  P      + C         N+    ++W KD +  L  N       + LI+  + + 
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 68

Query: 151 DEGVYICSIQNAQGNV-FQDYASIQV 175
             G Y C          +     I+ 
Sbjct: 69  HRGNYTCHASYTYLGKQYPITRVIEF 94

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 6/82 (7%)

Query: 190 SQTFIVGDRADIQCVLEA-----GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA 244
            Q   V     + C             P   W +               +   L   N+A
Sbjct: 8   KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-DRLIVMNVA 66

Query: 245 TGDEGKYTCIAENSAGKEVMNA 266
               G YTC A  +   +    
Sbjct: 67  EKHRGNYTCHASYTYLGKQYPI 88

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR 336
            +T +    +  G+ LTL  E+     P+V          +             +++ + 
Sbjct: 2   GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG--------GKTLSVSQLE 53

Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
             D+G + C    +    E  I + V    +
Sbjct: 54  LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 84

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 9/91 (9%)

Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNI 243
            +  N+    + G    +      G     Q       + + G  +           + +
Sbjct: 2   GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL---------SVSQL 52

Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
              D G +TC    +  K      I VL   
Sbjct: 53  ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 6/78 (7%)

Query: 93  EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI------AGETLIING 146
           EV+          G     E + ++P    +W    Q                  LI++ 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 147 ITKADEGVYICSIQNAQG 164
                 G       NA+ 
Sbjct: 63  CQLGMTGEVSFQAANAKS 80

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 276 VTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTI 332
           + +  P   V V  GE    E E    P     W     P     + E  E   + +  +
Sbjct: 2   IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60

Query: 333 ASVRESDAGQYKCIGKNSAGT 353
            + +    G+      N+   
Sbjct: 61  HNCQLGMTGEVSFQAANAKSA 81

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 183 IRI-HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLR 239
           I +  P       VG+ A  +   E  EP     W          PD E+ +  +  +L 
Sbjct: 2   IEVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILI 59

Query: 240 FNNIATGDEGKYTCIAENSAG 260
            +N   G  G+ +  A N+  
Sbjct: 60  LHNCQLGMTGEVSFQAANAKS 80

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 31/119 (26%)

Query: 275 AVTIT-PSEYVSVRPGEPLTLECEATGRPMPT----VSWVKYIAPFDR------------ 317
           +++IT P E +    GE   L C+ T  P       + W+   A   +            
Sbjct: 4   SLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDK 63

Query: 318 -------------NLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
                        +   ++L S      + +++ SD G Y+C  K + G   K I + V
Sbjct: 64  IYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 9/61 (14%), Positives = 18/61 (29%)

Query: 210 PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
            S      +                 G L+  N+   D G Y     ++ G  ++N  + 
Sbjct: 34  GSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALD 93

Query: 270 V 270
           +
Sbjct: 94  L 94

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 281 SEYVSVRPGEPLTLEC------------EATGRPMPTVSWVKYIAPFDRNLERDELTSRA 328
           S  V    G  + L                         + + + PF ++    E+ +  
Sbjct: 2   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKS-GAFEILANG 60

Query: 329 VYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAV 362
              I ++   D+G Y     ++ GT    K + + +
Sbjct: 61  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P V++ P     +  GE +TL C        + +   +              + +   I 
Sbjct: 2   PKVSLNPPW-NRIFKGENVTLTCNGNNFFEVSSTKWFHN-------GSLSEETNSSLNIV 53

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITV 360
           + +  D+G+YKC  +    +E   + V
Sbjct: 54  NAKFEDSGEYKCQHQQVNESEPVYLEV 80

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 11/92 (11%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P++ ++P        G+   + C            +    +   F       +    L  
Sbjct: 2   PKVSLNPP-WNRIFKGENVTLTC--------NGNNFFEVSSTKWFHNGSLSEETNSSLNI 52

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
            N    D G+Y C  +     E    Y+ V +
Sbjct: 53  VNAKFEDSGEYKCQHQQVNESE--PVYLEVFS 82

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 96  VTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVY 155
           +    +   EG  + + C         K       +          + I   T  D G Y
Sbjct: 5   LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTY 64

Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPR 182
            C+ +  Q +   +  +I V   + PR
Sbjct: 65  YCTGKVWQLDYESEPLNITV--IKAPR 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 96  VTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
           V P+  + P  +   + C         TI W +           A    ++N        
Sbjct: 6   VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTT---KIGGPAPSPSVLNVTGVTQST 62

Query: 154 VYICSIQNAQGNVFQDYASIQV 175
           ++ C   N +G      A++ +
Sbjct: 63  MFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 273 LPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
           +P  T+ P + ++V P  P  L CEA       T+ W +               + +   
Sbjct: 1   VPFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSV 52

Query: 332 IASVRESDAGQYKCIGKNSAG-TEEKVITVAV 362
           +     + +  + C   N  G    +  TV +
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 9/92 (9%)

Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
           +P   + P             + C         T  W R     K G             
Sbjct: 1   VPFFTVEP-KDLAVPPNAPFQLSCEAVGPPEPVTIVWWR--GTTKIGGPAPSPS-----V 52

Query: 240 FNNIATGDEGKYTCIAENSAGKEV-MNAYIHV 270
            N         ++C A N  G      A +H+
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 118

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
           V+  PS  V V+ G  + +EC +    + T+ W +
Sbjct: 4   VSQHPS-MVIVKSGTSVKIECRSLDTNIHTMFWYR 37

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 96  VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
           +        EG  + + C    + P   + + ++ + +         +  I     +  G
Sbjct: 5   LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFS--IPQANHSHSG 62

Query: 154 VYICSIQNAQGNVFQDYASIQV 175
            Y C+             +I V
Sbjct: 63  DYHCTGNIGYTLYSSKPVTITV 84

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 12/82 (14%), Positives = 19/82 (23%), Gaps = 7/82 (8%)

Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEG 249
              F  G+   ++C     +P    T+ +     KF      +                G
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNF------SIPQANHSHSG 62

Query: 250 KYTCIAENSAGKEVMN-AYIHV 270
            Y C               I V
Sbjct: 63  DYHCTGNIGYTLYSSKPVTITV 84

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 277 TITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
            +    +V  +  +P+ L C +     +  V++++            +      + I   
Sbjct: 6   LLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD------FHIPKA 58

Query: 336 RESDAGQYKCIGKNSAGTEE-KVITVAV 362
              D+G Y C G   +     + + + +
Sbjct: 59  TLKDSGSYFCRGLVGSKNVSSETVNITI 86

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 3/90 (3%)

Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
           P     P       +G    + C L   +   +  W   D        V+      VL  
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT---SLGAVQSDTGRSVLTV 59

Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
            N +    G   C+             + V
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 286 VRPGEPLTLECEATGRPMPTVSWVKYIA-----PFDRNLERDELTSRAVYTIASVRESDA 340
           V+  E + L+C +    +    ++ +             E  +  S+A ++I+ + +  A
Sbjct: 13  VKSEETVILQCWS---DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLA 69

Query: 341 GQYKCIGKNS 350
           G Y+C G  +
Sbjct: 70  GTYRCYGSVT 79

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVY 330
           P ++   S  +       + ++C+A  R       +              +    +   +
Sbjct: 8   PFISAKSSPVIP--LDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 64

Query: 331 TIASVRESDAGQYKCIGKNSAGTEEK 356
            I  +  + AG+Y+C  +        
Sbjct: 65  VIDHMDANKAGRYQCQYRIGHYRFRY 90

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY 311
           VT   S +VSV  G  + L C  +    P + W   
Sbjct: 3   VTQLGS-HVSVSEGALVLLRCNYSSSVPPYLFWYVQ 37

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 7/96 (7%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG---RPMPTVSWVK----YIAPFDRNLERDELTS 326
           P   I   +   V  G+  T+EC           T+   +                   +
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
            A +   + RE     + C+      +    I    
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%)

Query: 94  VQVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQE--------QLPPNMIAGET 141
           V +T +      G   TIEC+        S T+   + N+           P    A  T
Sbjct: 5   VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT 64

Query: 142 LIINGITKADEGVYICSIQNAQG 164
                  +     + C       
Sbjct: 65  FNSTADREDGHRNFSCLAVLDLM 87

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
             + + P   ++V   + +TL C  T  P        +         +            
Sbjct: 5   AVLKLEPQW-INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQP-------SYRF 56

Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITV 360
               +D+G+Y C    ++ ++   +TV
Sbjct: 57  KANNNDSGEYTCQTGQTSLSDPVHLTV 83

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 23/106 (21%)

Query: 93  EVQVTPRQQSAPEGSQVTIEC---------------KSNDPSATIK-WSKDNQEQLPPNM 136
           EV +        E + V +                  +      I  +  ++        
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 137 IAGET-------LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
            +G         L+   IT  D GVY   + +      Q      V
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 26/92 (28%)

Query: 93  EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE---------- 140
           E  VT  PR + A  G +VT+ C+  +    + W + +       +              
Sbjct: 1   EAAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDI 60

Query: 141 --------------TLIINGITKADEGVYICS 158
                         +LI+   T +   VY C+
Sbjct: 61  PDGYEASRPSQEQFSLILESATPSQTSVYFCA 92

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
           VT   +  V+V  G  L L C+ +    P + W  
Sbjct: 3   VTQPDAR-VTVSEGASLQLRCKYSYSATPYLFWYV 36

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
           +   P  +  V  G+ + L C       P +SW +
Sbjct: 4   LEQNPR-WRLVPRGQAVNLRCILKNSQYPWMSWYQ 37

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 30/117 (25%)

Query: 46  EVTVYEGGDAELKCN-TYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAP 104
           ++  Y    A+L C            L  +      ++       +     V  +     
Sbjct: 3   KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKY---- 58

Query: 105 EGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQN 161
                              +  D+            TL ++ +   D+G+Y C I +
Sbjct: 59  --------------MGRTSFDSDSW-----------TLRLHNLQIKDKGLYQCIIHH 90

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 13/82 (15%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE------------RDE 323
           V  TP   V+   GE LT+ C          S   Y        E             + 
Sbjct: 2   VDQTPR-SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS 60

Query: 324 LTSRAVYTIASVRESDAGQYKC 345
            +      I  +   D G Y+C
Sbjct: 61  GSKSFSLRINDLTVEDGGTYRC 82

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
           P ++      +   PGE ++L C  +   +P   +           +       A +++ 
Sbjct: 6   PFLSADRGLVLM--PGENISLTC--SSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG 61

Query: 334 SVRESDAGQYKCIGKNS 350
            V  + +G Y+C G  +
Sbjct: 62  PVDLNVSGIYRCYGWYN 78

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 34/122 (27%)

Query: 47  VTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQ--VTPRQQSAP 104
           V   +G   EL C               + + ++    ++L+   +++      R+    
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 105 EGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG 164
           +G+                                  LII  +   D   YIC +++ + 
Sbjct: 64  QGNF--------------------------------PLIIKNLKIEDSDTYICEVEDQKE 91

Query: 165 NV 166
            V
Sbjct: 92  EV 93

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 29/115 (25%)

Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVS--------------------------WV 309
           V  T  E V    G  +TL C        +                            ++
Sbjct: 2   VVYTDRE-VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60

Query: 310 KYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
             +  F   ++   D         I ++  SD G + C  KN      K   V +
Sbjct: 61  DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	471
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.55
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.55
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.54
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.54
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.54
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.53
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.52
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.51
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.51
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.49
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.47
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.46
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.46
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.45
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.45
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.45
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.45
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.45
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.44
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.44
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.44
d2avga1	110	Cardiac myosin binding protein C, different domain	99.44
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.43
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.43
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.43
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.42
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.42
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.42
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.41
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.41
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.4
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.4
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.38
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d2avga1	110	Cardiac myosin binding protein C, different domain	99.38
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.37
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.36
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.35
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.35
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.35
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.34
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.34
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.34
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.34
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.33
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.32
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.32
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.32
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.32
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.31
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.29
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.29
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.28
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.28
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.28
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.28
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.27
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.27
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.27
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.26
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.26
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.26
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.26
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.25
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.24
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.24
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.23
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.23
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.22
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.22
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.22
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.21
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.21
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.19
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.19
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.19
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.18
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.17
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.16
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.15
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.13
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.12
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.11
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.11
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.11
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.1
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.09
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.06
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.05
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.04
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.97
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.91
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.88
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.84
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.84
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.84
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.83
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.8
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.74
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.73
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.73
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.72
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.72
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.7
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.69
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.68
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.66
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.65
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.64
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.63
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.63
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.6
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.6
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.59
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.59
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.59
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.58
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.57
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.56
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.55
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.55
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.55
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.55
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.54
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.53
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.53
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.5
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.5
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.49
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.49
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.48
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.48
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.47
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.46
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.46
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.46
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.45
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.44
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.44
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.43
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.42
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.41
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.41
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.41
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.4
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.39
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.38
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.37
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.36
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.35
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.35
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.34
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.33
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.32
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.31
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.31
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.31
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.3
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.29
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.27
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.26
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.25
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.24
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.24
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.23
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.22
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.21
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.21
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.18
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.18
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.15
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.15
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.14
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.13
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.12
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.12
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.1
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.1
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.09
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.08
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.07
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.07
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.06
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.03
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.02
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.01
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.0
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.0
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.0
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.0
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.99
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.99
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.98
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.98
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.96
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.95
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.95
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.95
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.94
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.94
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.93
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.93
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.93
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.93
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.93
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.93
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.91
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.91
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.91
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.91
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.9
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.9
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.9
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.9
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.88
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.87
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.87
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.87
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.86
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.86
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.86
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.86
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.85
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.85
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.84
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.82
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.81
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.81
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.81
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.8
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.8
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.8
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.8
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.79
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.79
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.78
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.77
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.77
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.76
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.76
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.75
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.74
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.74
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.74
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.74
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.74
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.74
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.73
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.72
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.72
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.7
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.7
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.69
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.68
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.68
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.67
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.67
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.66
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.65
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.64
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.63
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.61
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.6
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.6
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.59
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.59
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.58
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.58
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.57
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.57
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.56
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.56
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.55
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.54
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.53
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.52
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.51
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.51
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.51
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.51
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.51
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.5
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.49
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.49
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.49
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.48
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.48
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.47
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.46
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.44
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.44
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.44
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.43
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.42
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.42
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.39
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.36
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.35
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.35
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.35
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.34
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.34
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.32
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.28
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.27
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.27
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.26
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.25
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.22
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.22
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.21
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.21
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.19
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.19
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.18
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.16
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.14
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.14
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.1
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.1
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.09
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.09
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.09
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.09
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.09
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.07
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.06
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.06
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.04
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.04
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.04
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.02
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.99
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.98
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.97
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.97
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.96
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.95
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.94
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.93
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.92
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.92
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.92
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.91
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.91
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.91
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.91
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.9
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.9
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.9
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.9
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.89
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.87
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.87
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.87
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.86
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.86
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.86
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.86
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.86
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.85
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.84
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.84
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.84
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.82
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.81
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.81
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.8
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.8
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.79
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.79
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.78
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.78
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.78
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.78
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.77
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.76
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.76
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.76
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.76
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.76
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.74
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.74
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.73
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.73
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.72
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.72
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.72
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.71
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.7
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.69
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.68
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.67
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.67
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.65
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.65
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.65
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.63
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.63

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=1.2e-15  Score=110.17  Aligned_cols=88  Identities=26%  Similarity=0.501  Sum_probs=73.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +|.+...+...+.+.+|+++.|.|.+.|.|.|.+.|++++..+.....   ......|.|.++..+|+|.|+|.|.|..|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA---TVTDSGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSE---EEETTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccE---EEeeeeEEECCCChhhCEEEEEEEEECCC
Confidence            456666666566889999999999999999999999999998864322   12334699999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy17058        353 TEEKVITVAVE  363 (471)
Q Consensus       353 ~~~~~~~l~V~  363 (471)
                      ..+..+.|.|+
T Consensus        79 ~~~~~~~l~V~   89 (89)
T d1biha4          79 DKYFETLVQVN   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999988874

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=2e-15  Score=109.67  Aligned_cols=88  Identities=25%  Similarity=0.416  Sum_probs=73.4

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      ++|.+....+....+.+|+++.|.|.+.|.|.|.+.|++++......    .....++|.|.++..+|+|.|+|.|.|..
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIK   78 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----eeeeeeEEEeCCCCccCCEEEEEEEEECC
Confidence            35666665555678999999999999999999999999977654332    23345689999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy17058        352 GTEEKVITVAVE  363 (471)
Q Consensus       352 g~~~~~~~l~V~  363 (471)
                      |..+.++.|.|.
T Consensus        79 G~~~~~~~l~V~   90 (91)
T d1cs6a3          79 GRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999999999885

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.5e-15  Score=108.63  Aligned_cols=86  Identities=23%  Similarity=0.402  Sum_probs=75.0

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      .....+.+|+++.|.|.+.|.|.+.+.|++++..+....  .........+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus         7 p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   86 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV   86 (101)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCE
T ss_pred             CCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEE
Confidence            346789999999999999999999999999999886432  233345667899999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy17058        359 TVAVEHRP  366 (471)
Q Consensus       359 ~l~V~~~p  366 (471)
                      .|.|.+.|
T Consensus        87 ~l~V~~~P   94 (101)
T d2cqva1          87 NLTVVDKP   94 (101)
T ss_dssp             EEEEECSC
T ss_pred             EEEEEecC
Confidence            99999876

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=4.7e-15  Score=106.96  Aligned_cols=87  Identities=23%  Similarity=0.396  Sum_probs=72.7

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      |.+...+ .+..+..|+++.|.|.+.|.|.|.+.|++++..+......  ......|.|.++..+|+|.|+|.|.|..|.
T Consensus         2 P~f~~~~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (89)
T d1cs6a4           2 PDWLDVI-TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI--EVSGGELRFSKLVLEDSGMYQCVAENKHGT   78 (89)
T ss_dssp             EEEEECC-CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSE--EEETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEEC-CCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccccee--eeeeeeEEEEeecccCCEEEEEEEEeCCCE
Confidence            3444443 4678899999999999999999999999999988754332  223568999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy17058        354 EEKVITVAVE  363 (471)
Q Consensus       354 ~~~~~~l~V~  363 (471)
                      .+.++.|.|+
T Consensus        79 ~~~~~~l~V~   88 (89)
T d1cs6a4          79 VYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999999885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=8.6e-15  Score=106.22  Aligned_cols=85  Identities=28%  Similarity=0.440  Sum_probs=70.3

Q ss_pred             CCcEEEc-CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         91 ANEVQVT-PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        91 ~~~v~~~-p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      +|.+... |..+.+.+|++++|.|. .+.|.+.+.|+++++.........++.|.|.+++.+|+|.|+|.|.|..|. ..
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~   82 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DT   82 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCE-EE
Confidence            5667765 78899999999999999 889999999999866554444447789999999999999999999999887 55


Q ss_pred             eeEEEEEe
Q psy17058        169 DYASIQVD  176 (471)
Q Consensus       169 ~~~~l~v~  176 (471)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1cs6a3          83 YQGRIIIH   90 (91)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56666653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=9.8e-15  Score=107.43  Aligned_cols=92  Identities=24%  Similarity=0.393  Sum_probs=76.4

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      |.+...+ .+..+.+|+++.|.|.+.|.|.|.+.|++++..+....  ..........|.|.++..+|+|.|+|.|.|..
T Consensus         2 P~f~~~p-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIVKP-YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEECC-CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEEEeC-CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            5555554 35688999999999999999999999999999886432  22334556789999999999999999999999


Q ss_pred             CceEEEEEEEEecCC
Q psy17058        352 GTEEKVITVAVEHRP  366 (471)
Q Consensus       352 g~~~~~~~l~V~~~p  366 (471)
                      |..+.++.|.|...+
T Consensus        81 G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          81 GTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEEECCEEECSC
T ss_pred             CEEEEEEEEEEeecC
Confidence            999999999997653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=1.1e-14  Score=106.32  Aligned_cols=90  Identities=28%  Similarity=0.397  Sum_probs=75.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+. .+...+.+.+|+++.|.|.+.|+|.|.+.|++++..+...  ...........|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~P~i~-~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKIL-TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEEC-CCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEE-eCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            35554 3445788999999999999999999999999999887643  22334456678999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy17058        351 AGTEEKVITVAVE  363 (471)
Q Consensus       351 ~g~~~~~~~l~V~  363 (471)
                      .|..+.++.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999999999874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.9e-14  Score=106.62  Aligned_cols=92  Identities=32%  Similarity=0.494  Sum_probs=73.3

Q ss_pred             CCceeeCCCc-cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058        273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       273 ~p~~~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      +|.+...+.. ...+..|+++.|.|.+.|+|.|.+.|++++..+.....    .......++|.|.+++.+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            4555544322 34667899999999999999999999999988764321    122345678999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy17058        348 KNSAGTEEKVITVAVEH  364 (471)
Q Consensus       348 ~n~~g~~~~~~~l~V~~  364 (471)
                      .|..|..+..+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998865

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-14  Score=104.01  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      .|.....+.+|+++.|.|.+.|.|.|.+.|++++..+..... ......++|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus         6 ~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~   84 (90)
T d1vcaa2           6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV-TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI   84 (90)
T ss_dssp             ESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEE-EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             ECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeee-eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence            344445678899999999999999999999998776543322 3345678999999999999999999999999999999


Q ss_pred             EEEEe
Q psy17058        359 TVAVE  363 (471)
Q Consensus       359 ~l~V~  363 (471)
                      .|.|.
T Consensus        85 ~v~V~   89 (90)
T d1vcaa2          85 QVEIY   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99885

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.54  E-value=2.6e-14  Score=105.37  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   ........+|.|.++..+|+|.|+|.|.|
T Consensus         4 aP~f~~~~-~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           4 APKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEecCC-CcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            45554444 467899999999999999999999999999998865432   12234556899999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy17058        350 SAGTEEKVITVAVEH  364 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~  364 (471)
                      ..|..+.++.|.|+.
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999999875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.3e-14  Score=103.69  Aligned_cols=86  Identities=30%  Similarity=0.470  Sum_probs=70.5

Q ss_pred             ceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        275 AVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       275 ~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      .+.+..+....+.+|+++.|.|.+. +.|.+.+.|++++..+.....   ....++|+|.+++.+|+|.|+|.|.|..|.
T Consensus         3 ~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFNGILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             EEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---EeeceEEEEecCCcccCEEEEEEEEECCCE
Confidence            3445545567899999999999997 577889999999887654322   234568999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy17058        354 EEKVITVAVE  363 (471)
Q Consensus       354 ~~~~~~l~V~  363 (471)
                      .+.++.|.|+
T Consensus        80 ~~~~~~l~V~   89 (89)
T d1gl4b_          80 DQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9999998874

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=6e-15  Score=107.11  Aligned_cols=83  Identities=27%  Similarity=0.561  Sum_probs=72.3

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      +.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....  .........+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   85 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF   85 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEE
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEE
Confidence            346789999999999999999999999999999886432  334455678999999999999999999999999999999


Q ss_pred             EEEEe
Q psy17058        359 TVAVE  363 (471)
Q Consensus       359 ~l~V~  363 (471)
                      .|.|+
T Consensus        86 ~l~V~   90 (91)
T d1tnna_          86 TLTIQ   90 (91)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            98875

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.53  E-value=1.2e-14  Score=106.97  Aligned_cols=85  Identities=21%  Similarity=0.406  Sum_probs=70.9

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .|.|...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.|.|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEET-TEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEe-eeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEEC
Confidence            478888999999999999999999 8899999999999 555543322       3457999999999999999999999


Q ss_pred             CCceeeeeEEEEEee
Q psy17058        163 QGNVFQDYASIQVDK  177 (471)
Q Consensus       163 ~~~~~~~~~~l~v~~  177 (471)
                      .|. ....+.|.|..
T Consensus        80 ~G~-~~~~~~l~V~~   93 (97)
T d1koaa1          80 YGT-KEEIVFLNVTR   93 (97)
T ss_dssp             TEE-EEEEECCEEEC
T ss_pred             CCE-EEEEEEEEEee
Confidence            887 66666677654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.52  E-value=4.5e-14  Score=104.87  Aligned_cols=91  Identities=26%  Similarity=0.372  Sum_probs=74.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...+ .+..+.+|+++.|.|.+.|.|.|.+.|++++..+......   .......+|.|.++..+|+|.|+|.|.|
T Consensus         8 ~P~f~~~~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTKTI-LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEcCC-CcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            35554444 4678899999999999999999999999999988754221   1233467899999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy17058        350 SAGTEEKVITVAVEH  364 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~  364 (471)
                      ..|..+.++.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998864

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=103.58  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      ..+.+|++++|.|.+.|.|.|.+.|++++..+        ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~--------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCE--------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccc--------eeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            46789999999999999999999999976553        2345679999999999999999999999999999999998


Q ss_pred             cCC
Q psy17058        364 HRP  366 (471)
Q Consensus       364 ~~p  366 (471)
                      ..|
T Consensus        81 ~~~   83 (84)
T d2nxyb2          81 AFQ   83 (84)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=2.5e-14  Score=103.03  Aligned_cols=83  Identities=23%  Similarity=0.432  Sum_probs=70.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      |.|...|.+..+.+|+++.|.|. .+.|.+.++|+++ +..+.....   ..+.|.|.+++.+|+|.|+|.|.|..|. .
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~   79 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-V   79 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEET-TEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEE-E
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEe-eccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCE-E
Confidence            67778889999999999999999 8899999999999 665554332   6779999999999999999999999887 5


Q ss_pred             eeeEEEEEe
Q psy17058        168 QDYASIQVD  176 (471)
Q Consensus       168 ~~~~~l~v~  176 (471)
                      ...+.|.|.
T Consensus        80 ~~~~~l~V~   88 (89)
T d1cs6a4          80 YASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            556666663

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.7e-14  Score=100.71  Aligned_cols=87  Identities=23%  Similarity=0.333  Sum_probs=70.7

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      |.....+.....+.+|+++.|.|.+. |.|.+.|.|++.+..+...   ......++|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g   79 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---QSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   79 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE---EEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee---eccCceeeEEcCccChhhCCcEEEEEEeCCC
Confidence            43334444456788999999999985 7889999999988776432   2345678999999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy17058        353 TEEKVITVAVE  363 (471)
Q Consensus       353 ~~~~~~~l~V~  363 (471)
                      ..+.++.|.|.
T Consensus        80 ~~~~s~~l~Vy   90 (90)
T d1gsma1          80 TFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEC
Confidence            99999998873

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=3.6e-14  Score=104.25  Aligned_cols=80  Identities=26%  Similarity=0.466  Sum_probs=68.1

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ..+.+|+++.|.|.+.|+|.|.+.|++++..+......   .......+|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46789999999999999999999999999988643221   123345789999999999999999999999999999998


Q ss_pred             EEe
Q psy17058        361 AVE  363 (471)
Q Consensus       361 ~V~  363 (471)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d3dara1          95 DVV   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            873

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=4e-14  Score=102.03  Aligned_cols=83  Identities=28%  Similarity=0.516  Sum_probs=67.6

Q ss_pred             CCcEEEcCCc-eeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         91 ANEVQVTPRQ-QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        91 ~~~v~~~p~~-~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      +|.|...|.. +.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....  ....|.|.+++..|+|.|+|.|.|..|. 
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-   79 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN-AKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-   79 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEET-TEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE-
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeC-CccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCE-
Confidence            5777777654 67899999999999 8899999999999 666654322  5678999999999999999999999887 


Q ss_pred             eeeeEEEEE
Q psy17058        167 FQDYASIQV  175 (471)
Q Consensus       167 ~~~~~~l~v  175 (471)
                      ....+.|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1biha4          80 KYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            555555554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1e-13  Score=100.12  Aligned_cols=84  Identities=30%  Similarity=0.498  Sum_probs=66.7

Q ss_pred             CCcEEEc-CCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         91 ANEVQVT-PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        91 ~~~v~~~-p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      |+.+.+. |....+.+|+++.|.|.  .+.|.+.+.|+|++......... .++.|+|.+++.+|+|.|+|.|.|..|. 
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-   79 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-   79 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCE-
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCE-
Confidence            4555664 56788999999999999  46788999999995544443333 6789999999999999999999999987 


Q ss_pred             eeeeEEEEE
Q psy17058        167 FQDYASIQV  175 (471)
Q Consensus       167 ~~~~~~l~v  175 (471)
                      ....+.|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1gl4b_          80 DQGTATLHV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            665666655

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.48  E-value=1e-13  Score=104.51  Aligned_cols=91  Identities=21%  Similarity=0.301  Sum_probs=69.7

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc---------------ccccccCceeEEEEeecCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN---------------LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---------------~~~~~~~~~~~l~i~~~~~  337 (471)
                      +|.+....+.+..+.+|+++.|.|.+.|.|.|.+.|++++......               .........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4555544445789999999999999999999999999976543211               0011223457899999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        338 SDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       338 ~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      +|+|.|+|.|.|..|....++.|.|.
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999999999873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-14  Score=105.50  Aligned_cols=89  Identities=20%  Similarity=0.352  Sum_probs=74.6

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCe-EEEEEEEcCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG-QYKCIGKNSA  351 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~  351 (471)
                      .|.+...+. +..+.+|+.+.|.|.+.|.|.|.+.|++++..+..............|.|.+++.+|.| .|+|.|.|..
T Consensus         2 ~P~i~~~~~-~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           2 VPTLKVQVP-NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CCEEEEECC-SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CCEEEEeCC-CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            355555543 46789999999999999999999999999988765544445667789999999999999 6999999999


Q ss_pred             CceEEEEEEEE
Q psy17058        352 GTEEKVITVAV  362 (471)
Q Consensus       352 g~~~~~~~l~V  362 (471)
                      |..+.++.|.|
T Consensus        81 G~~~~s~~l~V   91 (92)
T d2ifga1          81 GRAEVSVQVNV   91 (92)
T ss_dssp             EECCEEECCCC
T ss_pred             CEEEEEEEEEE
Confidence            99998888765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=7.2e-14  Score=101.78  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      +|.|...+.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECS-SSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEee-eeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            567777788999999999999999 9999999999999 555443222       4568999999999999999999999


Q ss_pred             CCceeeeeEEEEE
Q psy17058        163 QGNVFQDYASIQV  175 (471)
Q Consensus       163 ~~~~~~~~~~l~v  175 (471)
                      .|. ......|.|
T Consensus        81 ~G~-~~~~~~l~V   92 (93)
T d1wiua_          81 LGE-DEAIFEVIV   92 (93)
T ss_dssp             TEE-EEEEEEEEE
T ss_pred             CCE-EEEEEEEEE
Confidence            987 555555554

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.1e-14  Score=108.87  Aligned_cols=93  Identities=26%  Similarity=0.483  Sum_probs=72.9

Q ss_pred             eCCceeeC----CCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc-----------------------------
Q psy17058        272 TLPAVTIT----PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN-----------------------------  318 (471)
Q Consensus       272 ~~p~~~~~----~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-----------------------------  318 (471)
                      ++|.+.+.    ....+.+.+|+.++|.|.+.|.|.|.+.|++++..+...                             
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            46665432    234668999999999999999999999999987654311                             


Q ss_pred             --ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058        319 --LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH  364 (471)
Q Consensus       319 --~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  364 (471)
                        ..........+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence              0111223456899999999999999999999999999999999864

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.45  E-value=8.9e-14  Score=102.38  Aligned_cols=85  Identities=18%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .+|.|...+.+..+.+|+.+.|.|. .+.|.+.+.|+++ +..+.....        ....|.|.+++.+|+|.|+|.|.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeC-ceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            4688888899999999999999999 8899999999999 655543322        23489999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ....+.|.|.
T Consensus        82 N~~G~-~~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGE-TSSHAFLLVQ   96 (98)
T ss_dssp             ETTEE-EEEEEEEEEE
T ss_pred             ECCcE-EEEEEEEEEE
Confidence            99887 6667777775

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=100.86  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=68.1

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      |.|...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ...+|.|.+++.+|+|.|+|.|.|..
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeC-ceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            34555678899999999999999 8899999999999 555543322       44579999999999999999999999


Q ss_pred             CceeeeeEEEEEe
Q psy17058        164 GNVFQDYASIQVD  176 (471)
Q Consensus       164 ~~~~~~~~~l~v~  176 (471)
                      |. ....+.|.|.
T Consensus        80 G~-~~~~~~l~V~   91 (101)
T d2cqva1          80 GS-RQAQVNLTVV   91 (101)
T ss_dssp             CE-EECCEEEEEE
T ss_pred             CE-EEEEEEEEEE
Confidence            88 6667777775

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=97.03  Aligned_cols=82  Identities=24%  Similarity=0.496  Sum_probs=64.4

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      |.+...| .+..+.+|+++.|.|.+.|.|.| ++.|+|++..+....       ...+.|.....+|+|.|+|.|.|..|
T Consensus         2 P~f~~~P-~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           2 PFFTVEP-KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CEEEECC-CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CcEEEeC-CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCC
Confidence            5555555 35788999999999999999987 899999998875432       23455666777899999999999999


Q ss_pred             ce-EEEEEEEEe
Q psy17058        353 TE-EKVITVAVE  363 (471)
Q Consensus       353 ~~-~~~~~l~V~  363 (471)
                      .. ++.+.|.|+
T Consensus        74 ~~~S~~~~v~Vk   85 (85)
T d1rhfa2          74 LASSRTATVHLQ   85 (85)
T ss_dssp             EEECCCEEEEEC
T ss_pred             cEEEEEEEEEEC
Confidence            65 456777764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.2e-13  Score=100.22  Aligned_cols=84  Identities=26%  Similarity=0.413  Sum_probs=66.0

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      +.|...|.+..+.+|+++.|.|. .+.|.+.+.|+++++........     .+++|.|.+++.+|+|.|+|.|.|..+.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            46777899999999999999999 88999999999994433222111     4568999999999999999999997666


Q ss_pred             eeeeeEEEEEe
Q psy17058        166 VFQDYASIQVD  176 (471)
Q Consensus       166 ~~~~~~~l~v~  176 (471)
                       ......+.|.
T Consensus        82 -~~~~~~i~Vi   91 (92)
T d1epfa2          82 -EINFKDIQVI   91 (92)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -EEEEEEEEEE
Confidence             4445555553

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.45  E-value=1.2e-13  Score=102.59  Aligned_cols=85  Identities=22%  Similarity=0.354  Sum_probs=70.7

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .+|.|...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ...+|.|.+++.+|+|.|+|.|.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEee-eccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            3678888899999999999999999 8889999999999 555543321        34589999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ...++.|.|.
T Consensus        86 N~~G~-~~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGE-ATCTAELLVE  100 (102)
T ss_dssp             ETTEE-EEEEEEEEEE
T ss_pred             ECCcE-EEEEEEEEEE
Confidence            99987 6666666664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=103.07  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=70.0

Q ss_pred             eCCCccEEecCCCcEEEEEEEeecC---CCeEEEEeCCccCCC-----c------ccccccCceeEEEEeecCCCCCeEE
Q psy17058        278 ITPSEYVSVRPGEPLTLECEATGRP---MPTVSWVKYIAPFDR-----N------LERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       278 ~~~~~~~~~~~g~~v~l~C~~~g~p---~~~i~W~~~~~~~~~-----~------~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      +..+.++.+.+|++++|.|.+.|.|   .|.+.|+|++.....     .      ...........|.|.+++.+|+|.|
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            3344567899999999999999988   479999998654321     0      1111223356799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEecCC
Q psy17058        344 KCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       344 ~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      +|.|.|..|..+.++.|.|..++
T Consensus        84 ~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          84 RCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEeCCCEEEEEEEEEEEcCC
Confidence            99999999999999999998765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.7e-13  Score=95.63  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      ...+.+|++++|.|.+ .+.|.+.+.|++++..        .......|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~--------~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGK--------NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             SSCEETTCCEEEEEEC-CTTCCCEEEEECTTCC--------EEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CeEEECCCeEEEEEEe-EcCCchheEEEeeccc--------ceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            3468899999999999 8999999999997765        233467899999999999999999999999999999999


Q ss_pred             EEeCC
Q psy17058        270 VLTLP  274 (471)
Q Consensus       270 V~~~p  274 (471)
                      |...|
T Consensus        79 V~~~~   83 (84)
T d2nxyb2          79 VLAFQ   83 (84)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            88655

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.4e-13  Score=95.47  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=68.5

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      |.....+.....+.+|+++.|.|.+..+.|.+.++|++.+..+.   ........+.|.|.+++.+|+|.|+|.|.|..+
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g   79 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   79 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---CEEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---eeeccCceeeEEcCccChhhCCcEEEEEEeCCC
Confidence            33333444456678999999999885678899999999877632   222333467899999999999999999999998


Q ss_pred             ceEEEEEEEEE
Q psy17058        261 KEVMNAYIHVL  271 (471)
Q Consensus       261 ~~~~~~~l~V~  271 (471)
                      ..+.++.|.|+
T Consensus        80 ~~~~s~~l~Vy   90 (90)
T d1gsma1          80 TFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEC
Confidence            88888888874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-13  Score=99.26  Aligned_cols=90  Identities=27%  Similarity=0.478  Sum_probs=71.1

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCc--------ccccccCceeEEEEeecC-CCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRN--------LERDELTSRAVYTIASVR-ESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~-~~d~G~  342 (471)
                      ||.+...+ ....+.+|+.+.|.|.+.|.|.+ .+.|++++......        ...........|.|.++. .+|+|.
T Consensus         2 PP~i~~~~-~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcC-CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            67776655 45688999999999999999988 79999976544311        112233456789999998 579999


Q ss_pred             EEEEEEcCCCceEEEEEEEEe
Q psy17058        343 YKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       343 Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      |+|.|.|..|..+..+.|.|+
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999884

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.8e-13  Score=98.71  Aligned_cols=83  Identities=25%  Similarity=0.500  Sum_probs=64.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCCCCCc---c------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQLPPNM---I------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~~~~~---~------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +|.+.|....+.+|+++.|.|. .+.|. +.+.|+++++..+....   .      ...+|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   81 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   81 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEe
Confidence            5788899999999999999999 77764 79999997565443221   1      346899999999999999999999


Q ss_pred             cCCceeeeeEEEEE
Q psy17058        162 AQGNVFQDYASIQV  175 (471)
Q Consensus       162 ~~~~~~~~~~~l~v  175 (471)
                      ..|......+.|.|
T Consensus        82 ~~G~~~~~tv~l~V   95 (97)
T d1epfa1          82 EDGTQSEATVNVKI   95 (97)
T ss_dssp             TTTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            98863333444444

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.44  E-value=6.4e-14  Score=101.56  Aligned_cols=79  Identities=22%  Similarity=0.468  Sum_probs=65.5

Q ss_pred             EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      ...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....       ..+.|.|.+++.+|+|.|+|.|.|..|. 
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-   80 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK-   80 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESS-SSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB-
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEe-ecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE-
Confidence            34678899999999999999 8899999999999 566544322       5578999999999999999999999888 


Q ss_pred             eeeeEEEEE
Q psy17058        167 FQDYASIQV  175 (471)
Q Consensus       167 ~~~~~~l~v  175 (471)
                      ....+.|.|
T Consensus        81 ~~~~~~l~V   89 (91)
T d1tnna_          81 QEAEFTLTI   89 (91)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            655666655

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.6e-13  Score=95.62  Aligned_cols=81  Identities=16%  Similarity=0.365  Sum_probs=64.8

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      |.|..+|.+..+.+|+++.|.|. .+.|.+ .|.|+|+ +..+......  .+.|.....+|+|.|+|.|.|..|...+.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~-g~~i~~~~~~--~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~   78 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG-TTKIGGPAPS--PSVLNVTGVTQSTMFSCEAHNLKGLASSR   78 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEET-TEECSCSEES--SEEEEECCCSSCEEEEEEEEETTEEEECC
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEEC-CEECCCCCCc--ceEEecCCccccEEEEEEEEcCCCcEEEE
Confidence            67889999999999999999999 888887 8999999 7666554433  45556666789999999999999864455


Q ss_pred             eEEEEE
Q psy17058        170 YASIQV  175 (471)
Q Consensus       170 ~~~l~v  175 (471)
                      .+.|.|
T Consensus        79 ~~~v~V   84 (85)
T d1rhfa2          79 TATVHL   84 (85)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            566655

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-13  Score=100.69  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=67.9

Q ss_pred             CccEEecCCCcEEEEEEEeecC---CCeEEEEeCCccCCCc-----------ccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        281 SEYVSVRPGEPLTLECEATGRP---MPTVSWVKYIAPFDRN-----------LERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p---~~~i~W~~~~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      +.+..+..|++++|.|.+.|.|   .|.+.|++++......           .........+.|.|.+++.+|+|.|+|.
T Consensus        11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (110)
T d2avga1          11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCE   90 (110)
T ss_dssp             CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEE
T ss_pred             CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEE
Confidence            3567899999999999999988   5689999987543211           0111122456899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEecC
Q psy17058        347 GKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       347 a~n~~g~~~~~~~l~V~~~  365 (471)
                      |.|..|..+.++.|.|...
T Consensus        91 a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          91 VSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEETTEEEEEEEEEEEESC
T ss_pred             EEECCCeEEEEEEEEEEec
Confidence            9999999999999999763

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.6e-13  Score=96.71  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=68.4

Q ss_pred             cCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       186 ~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      .|.....+.+|+.+.|.|.+ .+.|.+.+.|++++..+. ..........+.|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         6 ~P~~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~   83 (90)
T d1vcaa2           6 TPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL-NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (90)
T ss_dssp             ESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC-SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             ECCCcEEEECCCEEEEEEec-cCCCCceEEEEecCccce-eeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEE
Confidence            34444456789999999999 799999999999887643 3333333446689999999999999999999999999999


Q ss_pred             EEEEEE
Q psy17058        266 AYIHVL  271 (471)
Q Consensus       266 ~~l~V~  271 (471)
                      +.|.|.
T Consensus        84 ~~v~V~   89 (90)
T d1vcaa2          84 IQVEIY   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998885

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.43  E-value=3.1e-13  Score=99.11  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE-E
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-K  356 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~  356 (471)
                      .++.+.+|+++.|.|.+.|.|.+.+.|++++..+....    .........+|.|.+++.+|+|.|+|.|.|..|... .
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            46788999999999999999999999999999876332    112334557899999999999999999999999864 5


Q ss_pred             EEEEEEe
Q psy17058        357 VITVAVE  363 (471)
Q Consensus       357 ~~~l~V~  363 (471)
                      ++.|.|.
T Consensus        91 s~~L~Vl   97 (97)
T d1biha3          91 SLKLTVV   97 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            6888773

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=99.74  Aligned_cols=82  Identities=29%  Similarity=0.456  Sum_probs=67.5

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EK  356 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~  356 (471)
                      .++.+.+|+.+.|.|.+.|.|.+.+.|++++..+.....    .........|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~   83 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ   83 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence            356889999999999999999999999999998864322    1123345689999999999999999999999975 56


Q ss_pred             EEEEEEe
Q psy17058        357 VITVAVE  363 (471)
Q Consensus       357 ~~~l~V~  363 (471)
                      .+.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1rhfa1          84 PVWLTVE   90 (91)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            7888875

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-13  Score=100.06  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=67.6

Q ss_pred             cCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT  359 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  359 (471)
                      ..+....|.|.+.|+|.|++.|++++..+......       ......+.|.|.+++.+|+|.|+|.|+|..|..+.++.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            45778889999999999999999999988643211       11223468999999999999999999999999999999


Q ss_pred             EEEecCCC
Q psy17058        360 VAVEHRPE  367 (471)
Q Consensus       360 l~V~~~p~  367 (471)
                      |.|.++|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            99998873

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-13  Score=97.89  Aligned_cols=76  Identities=18%  Similarity=0.351  Sum_probs=61.7

Q ss_pred             cCCCCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +..+|.+.+.+..+.+.+|+++.|.|. .+.+ .+.|+|+|+ +..+.....    .+.+|.|.+++.+|+|.|+|.+.|
T Consensus         3 P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~-~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR-KPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             SSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEE-CSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSS
T ss_pred             CCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEc-cccccceeeEEecCCCEEEECCCChhcCEEEEEEECC
Confidence            346788999999999999999999999 5544 468999999 555543322    577999999999999999999977


Q ss_pred             cCC
Q psy17058        162 AQG  164 (471)
Q Consensus       162 ~~~  164 (471)
                      ..+
T Consensus        82 ~~~   84 (93)
T d1n26a1          82 RPA   84 (93)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.2e-14  Score=98.78  Aligned_cols=72  Identities=21%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      ....+.+|+.+.|.|.+.|+|.|++.|++++..+....           .+..++.+|+|.|+|.|.|..|..+..+.|.
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~   80 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN   80 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------SCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-----------eeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence            45688899999999999999999999999987654221           2456788999999999999999999999999


Q ss_pred             Eec
Q psy17058        362 VEH  364 (471)
Q Consensus       362 V~~  364 (471)
                      |..
T Consensus        81 V~~   83 (84)
T d2oz4a3          81 VLS   83 (84)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            865

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3.2e-13  Score=99.80  Aligned_cols=84  Identities=27%  Similarity=0.452  Sum_probs=66.0

Q ss_pred             CCcEEEcCCc--eeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEE
Q psy17058         91 ANEVQVTPRQ--QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICS  158 (471)
Q Consensus        91 ~~~v~~~p~~--~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ||.|...+..  .++.+|+++.|.|. .+.|.+.+.|+++ +..+.....         ..+.|.|.+++.+|+|.|+|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~-g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEET-TEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeC-CcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            5777776654  46788999999999 8899999999998 554432211         457899999999999999999


Q ss_pred             EEecCCceeeeeEEEEEe
Q psy17058        159 IQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       159 ~~~~~~~~~~~~~~l~v~  176 (471)
                      |.|..|. ......|.|.
T Consensus        82 a~N~~G~-~~~~~~l~V~   98 (100)
T d1qz1a3          82 AENKAGE-QDASIHLKVF   98 (100)
T ss_dssp             EEETTEE-EEEEEEEEEE
T ss_pred             EEECCCE-EEEEEEEEEE
Confidence            9999887 6656666654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-13  Score=100.87  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEEeecCCCeEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058        288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .+....|.|.+.|+|.|++.|++++..+.....      .......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            455567888999999999999999998864321      11223356799999999999999999999999999999999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        96 V~~~P  100 (105)
T d1wwca_          96 FLKEP  100 (105)
T ss_dssp             CSCCC
T ss_pred             EEeCC
Confidence            98776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.7e-13  Score=97.57  Aligned_cols=81  Identities=21%  Similarity=0.337  Sum_probs=65.7

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV  360 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  360 (471)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+..... ......+++|.|.+++.+|+|.|+|.|.|..|.......|
T Consensus         9 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i   88 (92)
T d1epfa2           9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI   88 (92)
T ss_dssp             SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEE
Confidence            457899999999999999999999999999987764322 1223344579999999999999999999988877666666


Q ss_pred             EE
Q psy17058        361 AV  362 (471)
Q Consensus       361 ~V  362 (471)
                      .|
T Consensus        89 ~V   90 (92)
T d1epfa2          89 QV   90 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=4e-13  Score=98.03  Aligned_cols=74  Identities=19%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .|.|...|.++.+.+|+.+.|.|. .+.|.+ .+.|+++ +..+.....      ..++|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD-GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEES-SSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEee-eeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence            577888899999999999999999 777765 7999999 665543221      5678999999999999999999999


Q ss_pred             CCc
Q psy17058        163 QGN  165 (471)
Q Consensus       163 ~~~  165 (471)
                      .|.
T Consensus        81 ~G~   83 (94)
T d1biha1          81 AGV   83 (94)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            886

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.5e-13  Score=99.51  Aligned_cols=83  Identities=17%  Similarity=0.348  Sum_probs=69.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE-EEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVA  361 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~  361 (471)
                      +..+.+|+++.|.|.+.+ +++.+.|++++..+.............+|.|.+++.+|.|.|+|.|.|..|... ..+.|.
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~   90 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD   90 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEE
Confidence            357899999999999875 567999999999887654444455667899999999999999999999999874 568999


Q ss_pred             EecCC
Q psy17058        362 VEHRP  366 (471)
Q Consensus       362 V~~~p  366 (471)
                      |..+|
T Consensus        91 V~~~P   95 (96)
T d1l6za2          91 IIFDP   95 (96)
T ss_dssp             ECCSC
T ss_pred             EEcCC
Confidence            98775

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.38  E-value=1.2e-12  Score=95.88  Aligned_cols=79  Identities=23%  Similarity=0.410  Sum_probs=62.1

Q ss_pred             EcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      ..+.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+.....         ...+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3           8 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             EECCSEEEETTSCEEEEEEEECSSCCCCEEEET-TEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             eCCCCEEEecCCeEEEEEEEEEecCCEEEEEEe-eeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            3467889999999999999 8899999999999 544432211         4568999999999999999999999887


Q ss_pred             eeeeeEEEEE
Q psy17058        166 VFQDYASIQV  175 (471)
Q Consensus       166 ~~~~~~~l~v  175 (471)
                      ..+....|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            3334455554

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=96.35  Aligned_cols=81  Identities=12%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             EEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      +.++++...+.+|++++|.|.  .+.|.+.+.|||+ +..+... ..+..|.|.+++.+|+|.|+|.|.|..+...+...
T Consensus         3 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~-g~~~~~~-~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2           3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQN-GKSKKFS-RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             EEEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEET-TEEEEEE-SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             EEEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEee-ccccccc-ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            455666777999999999998  4557779999999 5444221 14568999999999999999999998775334445


Q ss_pred             EEEEe
Q psy17058        172 SIQVD  176 (471)
Q Consensus       172 ~l~v~  176 (471)
                      .|.|.
T Consensus        81 ~l~V~   85 (88)
T d2fcba2          81 TITVQ   85 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            55554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-12  Score=97.47  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=66.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCC---CCeEEEEeCCCCCCCCCcc---------------cCcEEEEcCCCCCC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP---SATIKWSKDNQEQLPPNMI---------------AGETLIINGITKAD  151 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~~~~~~~~~~---------------~~~~L~i~~v~~~D  151 (471)
                      .+.|...|.++++.+|++++|.|. .+.|   .+.|.|++++...+.....               ....|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            356777899999999999999999 7777   5789999984333322110               23479999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      +|.|+|.|.|..|. ....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~-~~~~~~L~V~  107 (110)
T d2avga1          84 TGGYRCEVSTKDKF-DCSNFNLTVH  107 (110)
T ss_dssp             CEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             CcEEEEEEEECCCe-EEEEEEEEEE
Confidence            99999999999988 6767777765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=97.83  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=68.2

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--------------ccccCceeEEEEeecCCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--------------RDELTSRAVYTIASVRESD  339 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--------------~~~~~~~~~l~i~~~~~~d  339 (471)
                      |.+.......+.+..|+++.|.|.+.|.|.|.+.|++++..+.....              .......+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            44544443445788899999999999999999999999887652210              0011224689999999999


Q ss_pred             Ce-EEEEEEEcCCCceEEEEEEE
Q psy17058        340 AG-QYKCIGKNSAGTEEKVITVA  361 (471)
Q Consensus       340 ~G-~Y~C~a~n~~g~~~~~~~l~  361 (471)
                      .| .|+|.|.|..|..+..+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999999888875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.6e-13  Score=96.56  Aligned_cols=79  Identities=18%  Similarity=0.371  Sum_probs=63.4

Q ss_pred             cCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICSIQNAQGNV  166 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~  166 (471)
                      .|.++.+.+|+++.|.|. .+.|.+.+.|+|+ +..+.....         ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEe-ecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            467889999999999999 8899999999999 655543321         23579999999999999999999988874


Q ss_pred             eeeeEEEEEe
Q psy17058        167 FQDYASIQVD  176 (471)
Q Consensus       167 ~~~~~~l~v~  176 (471)
                      .+..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4455666553

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.37  E-value=4.5e-13  Score=96.12  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=62.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      .+.++++...+.+|++++|.|.  .+.|.+.+.|||+ +..+... ..+..|.|.+++.+|+|.|.|.|.|..+...+..
T Consensus         4 ~Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kn-g~~~~~~-~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~   81 (89)
T d1fnla2           4 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQN-GKDRKYF-HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSET   81 (89)
T ss_dssp             SEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEET-TEEEEEE-EECCCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EEEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEc-cccccee-ccccccEECccceeccceEEEEEEeCCCCeEEee
Confidence            3556667778999999999998  4567778999999 5444321 1456899999999999999999999877634444


Q ss_pred             EEEEEe
Q psy17058        171 ASIQVD  176 (471)
Q Consensus       171 ~~l~v~  176 (471)
                      +.|.|.
T Consensus        82 v~itV~   87 (89)
T d1fnla2          82 VNITIT   87 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555553

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=94.05  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             EEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA  171 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  171 (471)
                      +.+++....|.+|+.++|.|.  .+.+...+.|||+ +..+.... ....|.|.+++.+|+|.|.|.|.|..+...+..+
T Consensus         3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~-g~~~~~~~-~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v   80 (89)
T d1f2qa2           3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKD-GEALKYWY-ENHNISITNATVEDSGTYYCTGKVWQLDYESEPL   80 (89)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEET-TEECCSCC-CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEe-eecccccc-ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence            455666778999999999998  4446679999999 65554322 4578999999999999999999997765333444


Q ss_pred             EEEEeeccCC
Q psy17058        172 SIQVDKREMP  181 (471)
Q Consensus       172 ~l~v~~~~~p  181 (471)
                      .|.|.  .+|
T Consensus        81 ~i~V~--~~P   88 (89)
T d1f2qa2          81 NITVI--KAP   88 (89)
T ss_dssp             EEEEE--CSC
T ss_pred             EEEEE--eCC
Confidence            45444  544

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=97.34  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=66.4

Q ss_pred             eCCCccEEecCCCcEEEEEEEeecC-CCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        278 ITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       278 ~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +.......+.+|+++.|.|.+.|.| .|.++|+|++..+.....       .........|.|.+++.+|+|.|+|.|.|
T Consensus         7 i~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           7 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             CCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            3344456889999999999999998 489999999877642111       01122345799999999999999999999


Q ss_pred             CCCceE-EEEEEEEec
Q psy17058        350 SAGTEE-KVITVAVEH  364 (471)
Q Consensus       350 ~~g~~~-~~~~l~V~~  364 (471)
                      ..|... .++.|.|.+
T Consensus        87 ~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          87 QSNLIESHSTTLYVTD  102 (104)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCeEEEEEEEEEEEE
Confidence            999764 468888764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.7e-12  Score=94.94  Aligned_cols=84  Identities=21%  Similarity=0.375  Sum_probs=64.9

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCC---CCCc----c-----cCcEEEEcCCC-CCCCeEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQL---PPNM----I-----AGETLIINGIT-KADEGVY  155 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~---~~~~----~-----~~~~L~i~~v~-~~D~G~Y  155 (471)
                      ||.|...+....+.+|+.+.|.|. .+.|.+ .+.|++++....   ....    .     ....|.|.+++ .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            788999999999999999999999 778776 799999732221   1110    0     34589999998 5799999


Q ss_pred             EEEEEecCCceeeeeEEEEE
Q psy17058        156 ICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v  175 (471)
                      +|.|.|..|. ....+.|.|
T Consensus        82 ~C~A~N~~G~-~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGS-DQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEE-EEEEEEEEE
T ss_pred             EEEEEECCCE-EEEEEEEEE
Confidence            9999999887 555555554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3e-12  Score=93.54  Aligned_cols=84  Identities=25%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      .+|.+.  +.+..+.+|++++|.|....+.+.+.|+++ +..+.....     ..++|.|.+++.+|+|.|+|.|.|..+
T Consensus         4 ~~P~i~--~~~~~v~~g~~v~l~C~~~~~~~~v~W~~~-~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   80 (96)
T d1l6za2           4 TQPFLQ--VTNTTVKELDSVTLTCLSNDIGANIQWLFN-SQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS   80 (96)
T ss_dssp             CCCCEE--CSCSEECTTSCEEEEECCCCSSCEEEEEET-TEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSC
T ss_pred             CCCeEE--cCceEEeCCCeEEEEEccCCCCCCEEEEEe-eeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCC
Confidence            456665  456789999999999994446689999999 655544322     567999999999999999999999888


Q ss_pred             ceeeeeEEEEEe
Q psy17058        165 NVFQDYASIQVD  176 (471)
Q Consensus       165 ~~~~~~~~l~v~  176 (471)
                      ...+..+.|.|.
T Consensus        81 ~~~S~~~~L~V~   92 (96)
T d1l6za2          81 VRRSNSIKLDII   92 (96)
T ss_dssp             CEECCCCEEEEC
T ss_pred             CeEEEeEEEEEE
Confidence            744445555554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=97.64  Aligned_cols=85  Identities=28%  Similarity=0.383  Sum_probs=65.0

Q ss_pred             CCCcEEEc-CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---CC--C--cc------------cCcEEEEcCCC
Q psy17058         90 QANEVQVT-PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---PP--N--MI------------AGETLIINGIT  148 (471)
Q Consensus        90 ~~~~v~~~-p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---~~--~--~~------------~~~~L~i~~v~  148 (471)
                      .+|.|... |.++++.+|++++|.|. .+.|.+.|.|++++....   ..  .  ..            ....|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46777654 78899999999999999 899999999999732211   00  0  00            23579999999


Q ss_pred             CCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        149 KADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      .+|+|.|+|.|.|..|. ...++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~-~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGI-SFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCE-EEEEEEEEE
Confidence            99999999999999987 666666655

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.34  E-value=1.1e-12  Score=95.51  Aligned_cols=81  Identities=23%  Similarity=0.410  Sum_probs=65.1

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcc-cccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      |.+...| .++.+.+|+.+.|.|.+.|.|.| .+.|+++|..+.... ........++|.|.++..+|+|.|+|.|.|..
T Consensus         3 P~i~~~p-~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           3 PVLKDQP-AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CEECCCC-SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEecC-CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5555444 45789999999999999999876 799999999886432 22233456789999999999999999999999


Q ss_pred             CceE
Q psy17058        352 GTEE  355 (471)
Q Consensus       352 g~~~  355 (471)
                      |...
T Consensus        82 G~~~   85 (94)
T d1biha1          82 GVAS   85 (94)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-13  Score=98.22  Aligned_cols=83  Identities=14%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCe-EEEEEEEecC
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEG-VYICSIQNAQ  163 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G-~Y~C~~~~~~  163 (471)
                      .|.|...+.+..+.+|+.+.|.|. .+.|.+.+.|+++ +..+.....     ....|.|.+++.+|.| .|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILT-ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEES-CCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEEC-CceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            578888999999999999999999 8999999999999 444432211     4568999999999999 7999999998


Q ss_pred             CceeeeeEEEEE
Q psy17058        164 GNVFQDYASIQV  175 (471)
Q Consensus       164 ~~~~~~~~~l~v  175 (471)
                      |. ...++.|.|
T Consensus        81 G~-~~~s~~l~V   91 (92)
T d2ifga1          81 GR-AEVSVQVNV   91 (92)
T ss_dssp             EE-CCEEECCCC
T ss_pred             CE-EEEEEEEEE
Confidence            87 544444433

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=95.65  Aligned_cols=74  Identities=22%  Similarity=0.536  Sum_probs=59.9

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQNAQGNVFQDY  170 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~  170 (471)
                      ...+.+|+++.|.|. .+.|.+.+.|+++ +..+.....        ..++|.|.+++.+|+|.|+|.|.|..|. ....
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kn-g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~   91 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT   91 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEET-TEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEEC-CEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEEE
Confidence            456889999999999 8889999999999 555532211        4579999999999999999999999887 5555


Q ss_pred             EEEEE
Q psy17058        171 ASIQV  175 (471)
Q Consensus       171 ~~l~v  175 (471)
                      +.|.|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.5e-12  Score=92.32  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=62.5

Q ss_pred             cEEecCCCcEEEEEEEeecCC-CeEEEEeCC-ccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-E
Q psy17058        283 YVSVRPGEPLTLECEATGRPM-PTVSWVKYI-APFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-E  355 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~-~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  355 (471)
                      ...+.+|+++.|.|.+.|.|+ +.+.|++++ ..+....    ........++|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            467889999999999999885 699999954 4333221    11123456789999999999999999999999975 4


Q ss_pred             EEEEEEEe
Q psy17058        356 KVITVAVE  363 (471)
Q Consensus       356 ~~~~l~V~  363 (471)
                      .++.|.|.
T Consensus        89 ~tv~l~V~   96 (97)
T d1epfa1          89 ATVNVKIF   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777774

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-12  Score=96.37  Aligned_cols=82  Identities=15%  Similarity=0.314  Sum_probs=64.8

Q ss_pred             EecCCCcEE---EEEEEeecCCCeEEEEeCCccCCCcccc---------cccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        285 SVRPGEPLT---LECEATGRPMPTVSWVKYIAPFDRNLER---------DELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       285 ~~~~g~~v~---l~C~~~g~p~~~i~W~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .+..|..+.   |.|.+.|+|.|.+.|++++..+......         ......+.|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            444455555   4558999999999999999987633210         1122346799999999999999999999999


Q ss_pred             ceEEEEEEEEecCC
Q psy17058        353 TEEKVITVAVEHRP  366 (471)
Q Consensus       353 ~~~~~~~l~V~~~p  366 (471)
                      ..+.++.|.|..+|
T Consensus        88 ~~~~~i~v~v~~~P  101 (107)
T d1he7a_          88 QASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEEEEECCCSCT
T ss_pred             EEEEEEEEEEEcCC
Confidence            99999999999887

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-12  Score=94.13  Aligned_cols=80  Identities=19%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  362 (471)
                      ...+.+|+++.|.|.+.| |.|.+.|++++..+............+.|.|.+++.+|+|.|+|.|.|..|..+....|.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            357889999999999997 6689999999998875544344455668999999999999999999999998766555544


Q ss_pred             e
Q psy17058        363 E  363 (471)
Q Consensus       363 ~  363 (471)
                      .
T Consensus        85 ~   85 (92)
T d1olza1          85 H   85 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=1e-12  Score=97.70  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=66.2

Q ss_pred             eeeCCCccEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCC--cccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        276 VTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDR--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       276 ~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +...+...+.+.+|+++.|.|.+ .|.|.+.+.|++++..+..  ..........++|.|.+++.+|+|.|+|.|.|..|
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCC
Confidence            44445556789999999999997 6899999999999987642  22223344567899999999999999999999999


Q ss_pred             ceEEEE
Q psy17058        353 TEEKVI  358 (471)
Q Consensus       353 ~~~~~~  358 (471)
                      ..+.++
T Consensus        86 ~~~~~v   91 (105)
T d1cs6a2          86 FITKSV   91 (105)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            887664

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.5e-13  Score=98.08  Aligned_cols=78  Identities=22%  Similarity=0.465  Sum_probs=59.9

Q ss_pred             cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc--------------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI--------------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~--------------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .+.+..+.+|++++|.|.  .+.|.+.+.|+++ +..+.....              ..+.|.|.+++.+|+|.|+|.|.
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   86 (104)
T d1nbqa2           8 VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR   86 (104)
T ss_dssp             CCCBSEEETTSCEEECCCCCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEE
T ss_pred             cCCCCEEecCCcEEEEEEeecCCCCCEEEEEEC-CEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEE
Confidence            334567889999999998  5789999999999 444332111              34689999999999999999999


Q ss_pred             ecCCceeeeeEEEEEe
Q psy17058        161 NAQGNVFQDYASIQVD  176 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v~  176 (471)
                      |..|. ...+..+.|.
T Consensus        87 N~~G~-~~~s~~v~v~  101 (104)
T d1nbqa2          87 NGYGT-PMTSNAVRME  101 (104)
T ss_dssp             CSSSC-CEECCCBCCE
T ss_pred             ECCCc-eEEEEEEEEE
Confidence            99987 5555555554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=2.1e-12  Score=95.66  Aligned_cols=85  Identities=18%  Similarity=0.366  Sum_probs=66.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC---------C----cc-cCcEEEEcCCCCCCCeEEE
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------N----MI-AGETLIINGITKADEGVYI  156 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~---------~----~~-~~~~L~i~~v~~~D~G~Y~  156 (471)
                      |.+...+..+.+.+|++++|.|. .+.|.+.+.|++.++.....         .    .. .+++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            45666677889999999999999 88899999999974432210         0    00 4568999999999999999


Q ss_pred             EEEEecCCceeeeeEEEEEee
Q psy17058        157 CSIQNAQGNVFQDYASIQVDK  177 (471)
Q Consensus       157 C~~~~~~~~~~~~~~~l~v~~  177 (471)
                      |.+.|..|. ......+.|.+
T Consensus        82 C~a~n~~g~-~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQ-NYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSS-SEEEEEEEEEE
T ss_pred             EEEEECCCC-EEEEEEEEEEE
Confidence            999999888 66666666654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.30  E-value=2.3e-12  Score=92.21  Aligned_cols=76  Identities=21%  Similarity=0.386  Sum_probs=62.0

Q ss_pred             EEecCCCcEEEEEEEeec-CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVA  361 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  361 (471)
                      ..+.+|++++|.|.+.+. |.+.+.|+|++..+..      ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccc------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            367899999999999765 5568999999877532      2345689999999999999999999999876 4568888


Q ss_pred             EecC
Q psy17058        362 VEHR  365 (471)
Q Consensus       362 V~~~  365 (471)
                      |+.+
T Consensus        84 V~~P   87 (88)
T d2fcba2          84 VQAP   87 (88)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.8e-12  Score=94.29  Aligned_cols=83  Identities=22%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc----------ccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----------LERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      ...+.+.+|+++.|.|.+.|.|.|.+.|++++......          ........+++|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence            34578899999999999999999999999876553211          11111223467999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy17058        351 AGTEEKVITVAVE  363 (471)
Q Consensus       351 ~g~~~~~~~l~V~  363 (471)
                      .|.....+.|.|.
T Consensus        88 ~g~~~~~~~v~v~  100 (102)
T d1f97a1          88 GGQNYGEVSIHLT  100 (102)
T ss_dssp             TSSSEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998777666553

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-12  Score=97.41  Aligned_cols=82  Identities=18%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCC---CCeEEEEeCCCCCCCC----Ccc-----------cCcEEEEcCCCCCCCeE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDP---SATIKWSKDNQEQLPP----NMI-----------AGETLIINGITKADEGV  154 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~~~~~~~----~~~-----------~~~~L~i~~v~~~D~G~  154 (471)
                      |...|.++.+.+|++++|.|. .+.|   .+.|.|+|++...+..    ...           ....|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            344678899999999999999 7776   5799999984322110    000           23479999999999999


Q ss_pred             EEEEEEecCCceeeeeEEEEEe
Q psy17058        155 YICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       155 Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |+|.|.|..|. ....+.|.|.
T Consensus        83 Y~C~a~N~~G~-~~~~~~L~V~  103 (113)
T d2dava1          83 YRCEVTYKDKF-DSCSFDLEVH  103 (113)
T ss_dssp             EEEEEECSSCE-EEECCEEEEE
T ss_pred             EEEEEEeCCCE-EEEEEEEEEE
Confidence            99999999988 6667777775

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=1.3e-12  Score=95.70  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=64.2

Q ss_pred             CCceeeCCCccEEecC---CCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRP---GEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~---g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+...|. +..+.+   |+++.|.|.+.|.|.|.+.|++++..+..... .........|.|..+..+|+|.|+|.|.
T Consensus         4 ~P~f~~~P~-~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEEQPA-HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEECCC-CEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEeCC-CEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            345554543 344444   47899999999999999999999988864321 1223344678888899999999999999


Q ss_pred             cCCCce-EEEEEEE
Q psy17058        349 NSAGTE-EKVITVA  361 (471)
Q Consensus       349 n~~g~~-~~~~~l~  361 (471)
                      |..|.. +..+.|.
T Consensus        83 N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          83 NARGTVVSREASLR   96 (97)
T ss_dssp             ETTEEEECCCEEEE
T ss_pred             ECCCEEEEEEEEEe
Confidence            999976 3355553

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.28  E-value=1.5e-12  Score=95.50  Aligned_cols=83  Identities=31%  Similarity=0.552  Sum_probs=65.5

Q ss_pred             CCCcEEEcCCceeecCC---CcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEG---SQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSI  159 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G---~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~  159 (471)
                      .+|.|..+|.+..+.+|   +++.|.|. .+.|.+.+.|+++ +..+.....      .+..|.|..++.+|+|.|+|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~n-g~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMN-GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEET-TEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEe-eeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence            36788888988888776   78999999 8889999999999 555543221      5567888999999999999999


Q ss_pred             EecCCceeeeeEEE
Q psy17058        160 QNAQGNVFQDYASI  173 (471)
Q Consensus       160 ~~~~~~~~~~~~~l  173 (471)
                      .|..|...+..+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            99988733444444

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=96.33  Aligned_cols=86  Identities=19%  Similarity=0.365  Sum_probs=66.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-------------cc-cCcEEEEcCCCCCCCeEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------------MI-AGETLIINGITKADEGVY  155 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-------------~~-~~~~L~i~~v~~~D~G~Y  155 (471)
                      .+.+...++.+.+.+|+++.|.|. .+.|.+.+.|+++++......             .. .+++|.|.+++.+|+|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence            455666777889999999999999 889999999999843321100             00 346899999999999999


Q ss_pred             EEEEEecCCceeeeeEEEEEee
Q psy17058        156 ICSIQNAQGNVFQDYASIQVDK  177 (471)
Q Consensus       156 ~C~~~~~~~~~~~~~~~l~v~~  177 (471)
                      +|.|.|..|. ......|.|.+
T Consensus        84 ~C~a~n~~G~-~~~~~~v~v~V  104 (105)
T d1nbqa1          84 TCMVSEEGGN-SYGEVKVKLIV  104 (105)
T ss_dssp             EEEEEETTSS-CEECCEEECCE
T ss_pred             EEEEEECCCC-EEEEEEEEEEE
Confidence            9999999888 55566666543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2e-12  Score=96.51  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=63.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .+.+.+|+++.|.|.+.|.|.|.+.|++++..+....          ........++|.|.+++.+|+|.|+|.|.|..|
T Consensus        13 ~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             eEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            4578899999999999999999999999876653211          001111235899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy17058        353 TEEKVITVAVE  363 (471)
Q Consensus       353 ~~~~~~~l~V~  363 (471)
                      .....+.|.|.
T Consensus        93 ~~~~~~~v~v~  103 (105)
T d1nbqa1          93 NSYGEVKVKLI  103 (105)
T ss_dssp             SCEECCEEECC
T ss_pred             CEEEEEEEEEE
Confidence            99877666653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.28  E-value=8.2e-12  Score=89.37  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIH  269 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~  269 (471)
                      ..+.+|++++|.|.+..+.|.+.+.||||+..+.      ....+..|.|.+++.+|+|.|+|++.|..+.. +..+.|.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~------~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~it   85 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK------YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNIT   85 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE------EEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccc------eeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEE
Confidence            3578999999999985566777999999986522      23336689999999999999999999987653 3456777


Q ss_pred             EEe
Q psy17058        270 VLT  272 (471)
Q Consensus       270 V~~  272 (471)
                      |.+
T Consensus        86 V~E   88 (89)
T d1fnla2          86 ITQ   88 (89)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.1e-12  Score=91.90  Aligned_cols=89  Identities=19%  Similarity=0.294  Sum_probs=62.9

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEe---CCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~---~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      .|.+. . ..++.+.+|+++.|.|.+.|.|.|.+.|++   ++..+...  ..........+|.|.++..+|+|.|+|.|
T Consensus         2 ~P~f~-~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-R-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-C-CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-c-cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            35553 3 456899999999999999999988544332   22222211  11122334568999999999999999999


Q ss_pred             EcCCCceEEE-EEEEEe
Q psy17058        348 KNSAGTEEKV-ITVAVE  363 (471)
Q Consensus       348 ~n~~g~~~~~-~~l~V~  363 (471)
                      .|..|....+ +.|.|+
T Consensus        80 ~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          80 RTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEEC
Confidence            9999987544 688774

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.9e-12  Score=91.62  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEe--CCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSK--DNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~--~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      .|.|. .+.++.+.+|+++.|.|. .+.|.+.+.|++  .++........       ..++|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            46664 678999999999999999 888877665443  22333322111       34579999999999999999999


Q ss_pred             ecCCceeeeeEEEEE
Q psy17058        161 NAQGNVFQDYASIQV  175 (471)
Q Consensus       161 ~~~~~~~~~~~~l~v  175 (471)
                      |..|...+..+.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999874455566665

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-12  Score=97.94  Aligned_cols=79  Identities=23%  Similarity=0.342  Sum_probs=62.4

Q ss_pred             EEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCccc---------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        284 VSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLE---------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ..+.+|+++.|.|.+ .|.|.+.+.|++++..+.....         .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            467889999999998 4799999999999988753211         111234568999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy17058        354 EEKVITVAV  362 (471)
Q Consensus       354 ~~~~~~l~V  362 (471)
                      ...+..|.|
T Consensus        92 ~~~s~~v~v  100 (104)
T d1nbqa2          92 PMTSNAVRM  100 (104)
T ss_dssp             CEECCCBCC
T ss_pred             eEEEEEEEE
Confidence            877655444

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4e-12  Score=95.65  Aligned_cols=81  Identities=22%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             EecCCCcEEEEEEEe-ecCCCeEEEEeCCccCCCcc----------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        285 SVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNL----------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      .+.+|+++.|.|.+. |+|.+.+.|++++..+....          ........+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            578999999999985 79999999999988764221          1112234568999999999999999999999998


Q ss_pred             eEE--EEEEEEecC
Q psy17058        354 EEK--VITVAVEHR  365 (471)
Q Consensus       354 ~~~--~~~l~V~~~  365 (471)
                      ..+  .+.|.|.+.
T Consensus        93 ~~~s~~v~l~V~~l  106 (110)
T d1f97a2          93 AMRSEAAHMDAVEL  106 (110)
T ss_dssp             CEECCCEEEEEESS
T ss_pred             EEEEEEEEEEEEec
Confidence            755  567777654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5.7e-12  Score=94.78  Aligned_cols=84  Identities=24%  Similarity=0.438  Sum_probs=60.6

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc---------------ccCcEEEEcCCCCCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM---------------IAGETLIINGITKAD  151 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~---------------~~~~~L~i~~v~~~D  151 (471)
                      +..|.+..   ...+.+|+++.|.|.  .+.|.+.+.|+++ +..+....               ...+.|.|.+++.+|
T Consensus         3 P~~p~~~~---~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D   78 (110)
T d1f97a2           3 PSKPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD   78 (110)
T ss_dssp             CCCCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEET-TEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGG
T ss_pred             CccceeCC---CCEEecCCeEEEEEEeecCCCCCEEEEEeC-CeEecCCCceeEEeecCceEEEeecccceEECCCCccC
Confidence            44455544   236889999999998  4789999999998 43321110               034589999999999


Q ss_pred             CeEEEEEEEecCCceeeeeEEEEEee
Q psy17058        152 EGVYICSIQNAQGNVFQDYASIQVDK  177 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~  177 (471)
                      +|.|+|.|.|..|. ...+..+.+.+
T Consensus        79 ~G~Y~C~a~N~~G~-~~~s~~v~l~V  103 (110)
T d1f97a2          79 SGEYYCQAQNGYGT-AMRSEAAHMDA  103 (110)
T ss_dssp             CEEEEEEEECSSSC-CEECCCEEEEE
T ss_pred             CEEEEEEEEECCCc-EEEEEEEEEEE
Confidence            99999999999887 44444555543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.2e-12  Score=90.07  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIH  269 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~  269 (471)
                      ..+.+|+.++|.|.+..+.+...+.|||+|..+...      .....|.|.+++.+|+|.|.|++.|..+.. +..+.|.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~   83 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT   83 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc------cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEE
Confidence            367899999999999555566799999998764332      125679999999999999999999987653 4667888


Q ss_pred             EEeCC
Q psy17058        270 VLTLP  274 (471)
Q Consensus       270 V~~~p  274 (471)
                      |.++|
T Consensus        84 V~~~P   88 (89)
T d1f2qa2          84 VIKAP   88 (89)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            88776

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.6e-12  Score=89.28  Aligned_cols=78  Identities=22%  Similarity=0.351  Sum_probs=57.6

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCe-EEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~-v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      .|.|+++|....+.+|++++|.|. .+.+.+. +.|+++ +..+..   .+..|.|.+++.+|+|.|.|.|.+....   
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~-~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~~s~~S---   73 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEE---TNSSLNIVNAKFEDSGEYKCQHQQVNES---   73 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEET-TEECSC---CSSEEEECSCCGGGCEEEEEECTTSSCC---
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeee-eeeeec---ccceeEECCCChhhCCcEEEEecCCCCc---
Confidence            478999999899999999999999 7777664 556666 555543   3568999999999999999999775433   


Q ss_pred             eeEEEEE
Q psy17058        169 DYASIQV  175 (471)
Q Consensus       169 ~~~~l~v  175 (471)
                      ..+.|.|
T Consensus        74 ~~v~l~V   80 (82)
T d1f2qa1          74 EPVYLEV   80 (82)
T ss_dssp             CCEEEEE
T ss_pred             ccEEEEE
Confidence            3344444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=88.51  Aligned_cols=65  Identities=22%  Similarity=0.378  Sum_probs=52.5

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      ...+.+|+++.|.|. .+ +.+.+.|++++.........    .++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            467999999999999 55 66899999994433332221    5678999999999999999999998776

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.8e-12  Score=93.98  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCCC--Ccc---------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLPP--NMI---------AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~~--~~~---------~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .+....+.+|+++.|.|. .+.| .|.+.|+|+++.....  ...         ....|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            456778999999999999 7777 5899999984433211  110         12369999999999999999999988


Q ss_pred             CceeeeeEEEEEe
Q psy17058        164 GNVFQDYASIQVD  176 (471)
Q Consensus       164 ~~~~~~~~~l~v~  176 (471)
                      |...+..+.|.|.
T Consensus        89 G~~~s~~~~l~V~  101 (104)
T d2aw2a1          89 NLIESHSTTLYVT  101 (104)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEE
Confidence            8634445666664

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.6e-12  Score=89.90  Aligned_cols=79  Identities=18%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      ..|.+... .....+.+|+.++|.|.+..+.+.++++|+|++..+....+. ....+.+|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~P~~~~~-~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1           5 RCPAQEVA-RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCCCCCCC-TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEE-EEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCCcEEeC-CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeE-EecCCCEEEECCCChhcCEEEEEEECCc
Confidence            34555553 345677899999999999433445699999999886555443 3444788999999999999999999765


Q ss_pred             C
Q psy17058        259 A  259 (471)
Q Consensus       259 ~  259 (471)
                      .
T Consensus        83 ~   83 (93)
T d1n26a1          83 P   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=89.44  Aligned_cols=83  Identities=19%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      ...+.+|+.+.|.|.+..+.|.+++.|+|++..+...  ....+...++.|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~   90 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS   90 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEE
Confidence            3456789999999988667889999999998765433  34445555789999999999999999999999999999999


Q ss_pred             EEEEe
Q psy17058        268 IHVLT  272 (471)
Q Consensus       268 l~V~~  272 (471)
                      |.|..
T Consensus        91 L~V~~   95 (101)
T d1iray1          91 AKFVE   95 (101)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99875

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.23  E-value=6.2e-12  Score=89.04  Aligned_cols=71  Identities=21%  Similarity=0.422  Sum_probs=57.4

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCCe-EEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~-v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .++|.|.+.|....+.+|++++|.|. .+.+.+. +.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.+..
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN-ESLISS---QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEET-TEEEES---SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeee-ceeeee---cceeeEecCCcccCCEEEEEEccCCC
Confidence            46788999999999999999999999 6766665 556666 554432   45689999999999999999987654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.2e-11  Score=89.71  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc---ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN---LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ....+.+|+++.|.|.+. .|.+.+.|++++..+...   ...........|.|.++..+|+|.|+|.|.|    ...++
T Consensus        14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~   88 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCST   88 (94)
T ss_dssp             SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECC
T ss_pred             CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEE
Confidence            345788999999999985 588899999999987543   2233344567899999999999999999966    45556


Q ss_pred             EEEEe
Q psy17058        359 TVAVE  363 (471)
Q Consensus       359 ~l~V~  363 (471)
                      .|.|.
T Consensus        89 ~l~V~   93 (94)
T d1pd6a_          89 ELFVK   93 (94)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66664

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=96.05  Aligned_cols=92  Identities=23%  Similarity=0.499  Sum_probs=69.7

Q ss_pred             cCCeeee----cCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC----------------------------
Q psy17058        179 EMPRIRI----HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG----------------------------  226 (471)
Q Consensus       179 ~~p~~~~----~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~----------------------------  226 (471)
                      +||.+.+    ..+....+.+|+.++|.|.+ .|.|.+.+.|++++..+...                            
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            4566543    23446678899999999999 79999999999987653221                            


Q ss_pred             -CCceEE--eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058        227 -PDVEVY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL  271 (471)
Q Consensus       227 -~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~  271 (471)
                       .++.+.  .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence             111221  123469999999999999999999999999888888875

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.1e-11  Score=89.47  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC-CCc----c-cCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP-PNM----I-AGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~-~~~----~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      .|..+.+.+|+.+.|.|.  .+.+.+.|.|+|++..... ...    . .+++|.|.+++.+|+|.|+|.+.|..|. ..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~   86 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LR   86 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE-EE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCe-EE
Confidence            455677889999999997  4678899999999543321 111    1 5679999999999999999999998887 66


Q ss_pred             eeEEEEEee
Q psy17058        169 DYASIQVDK  177 (471)
Q Consensus       169 ~~~~l~v~~  177 (471)
                      .++.|.|..
T Consensus        87 ~~~~L~V~~   95 (101)
T d1iray1          87 IKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            667777753

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=87.85  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+..+..+.+|+++.|.|.+. .|.+.+.|++++..+....    .........+|.|.++..+|+|.|+|.|.|    .
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----c
Confidence            345567899999999999984 6888999999998875332    222334567899999999999999999977    4


Q ss_pred             EEEEEEEEec
Q psy17058        355 EKVITVAVEH  364 (471)
Q Consensus       355 ~~~~~l~V~~  364 (471)
                      ..++.|.|..
T Consensus        80 ~~~a~l~V~~   89 (90)
T d1x44a1          80 QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEE
Confidence            5566677654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-11  Score=90.49  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC--eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP--TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      ++.+.+.+. ...+.+|+.++|.|.+.| +|.+  ++.|++++..+..... ......++|.|.....+|+|.|+|+|.|
T Consensus         4 P~~v~i~p~-~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~-~~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1           4 PERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-VGEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CSEEEECCC-CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-CTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCceEEeCC-CceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc-ccccceEEEEEeeehhHCCCEEEEEEEe
Confidence            455555554 346889999999999987 6655  6889999988764322 2344567899999999999999999999


Q ss_pred             CCCceEEEEEEEEecC
Q psy17058        350 SAGTEEKVITVAVEHR  365 (471)
Q Consensus       350 ~~g~~~~~~~l~V~~~  365 (471)
                      ..|.....+.+.+..+
T Consensus        82 ~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          82 DLRPQGLELFENTSAP   97 (103)
T ss_dssp             ECGGGTSCEEEEECCC
T ss_pred             CCCCccCeEeeeEcCC
Confidence            9998877777777654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.21  E-value=1.4e-11  Score=87.48  Aligned_cols=72  Identities=18%  Similarity=0.437  Sum_probs=58.7

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      +++|.|.+.|....+.+|++++|.|. .+.+.+ .+.|+++ +..+..   ....|.|.+++.+|+|.|+|.+.|..+
T Consensus         2 Ppkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~-g~~~~~---~~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           2 PPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHN-GNLIPT---HTQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             CCBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEET-TEECTT---CCSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CCCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecc-cccccc---cccceEEeeccccCCcEEEEECCCCcc
Confidence            45678999999999999999999999 666554 6888888 665543   356899999999999999999887543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.9e-12  Score=91.29  Aligned_cols=71  Identities=30%  Similarity=0.413  Sum_probs=56.1

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |..+++.+|+.+.|.|. .+.|.+.++|+|++....+.       +.+.+++.+|+|.|.|.|.|..|. .+..+.|.|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------~~~~~v~~~d~G~Y~C~A~N~~G~-~~~~~~l~V~   82 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------GESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL   82 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------TSCEECCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------eeeeccccCCCCEEEEEEEcCCCE-EEEEEEEEEE
Confidence            56788999999999999 89999999999994433321       234578899999999999999887 5555555553

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.2e-13  Score=100.76  Aligned_cols=97  Identities=19%  Similarity=0.293  Sum_probs=73.7

Q ss_pred             EEEEeCCceeeCCCccEEecCCCcEEEEEEEeecC-CCeEEEEeCCccCCCcccc--------cccCceeEEEEeecCCC
Q psy17058        268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYIAPFDRNLER--------DELTSRAVYTIASVRES  338 (471)
Q Consensus       268 l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~  338 (471)
                      |.|..+|.+...  ....+.+|+.+.|.|.+.|.| .+.+.|++++..+......        ......+.|.|.++..+
T Consensus         2 L~V~~Pp~i~~~--~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           2 LTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCSSCCEEEE--CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             eEEecCCEEecC--CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            556677776543  245678999999999999854 5589999998887532110        11122357999999999


Q ss_pred             C-CeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        339 D-AGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       339 d-~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      | +|.|+|.|.|..|.++..+.|.|...+
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            8 799999999999999999999987653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.4e-11  Score=87.28  Aligned_cols=72  Identities=21%  Similarity=0.387  Sum_probs=54.5

Q ss_pred             CCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC-CCcc-------cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058         98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP-PNMI-------AGETLIINGITKADEGVYICSIQNAQGNVFQD  169 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~-~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~  169 (471)
                      +....|.+|+++.|.|..+.|.+.+.|+++ +..+. ....       ....|.|.+++.+|+|.|+|.|.|.     ..
T Consensus        13 ~~~~~v~~G~~v~l~c~v~~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~   86 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELADHDAEVKWLKN-GQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-----KC   86 (94)
T ss_dssp             CSEEEEETTSCEEEEEECSSSSSCCEEEES-SSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-----EE
T ss_pred             CCCEEECcCCeEEEEEEECCCCceEEEEEc-CccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-----EE
Confidence            445679999999999995558889999999 55443 2211       3458999999999999999999663     33


Q ss_pred             eEEEEE
Q psy17058        170 YASIQV  175 (471)
Q Consensus       170 ~~~l~v  175 (471)
                      ++.|.|
T Consensus        87 s~~l~V   92 (94)
T d1pd6a_          87 STELFV   92 (94)
T ss_dssp             CCEEEE
T ss_pred             EEEEEE
Confidence            455555

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.19  E-value=1.8e-11  Score=90.75  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=64.1

Q ss_pred             ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC--ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD--VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       185 ~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      ..+.....+.+|+.+.|.|.+..+.|.+.+.|+|++..+.....  .......+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus         8 ~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2           8 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            34445667899999999999766889999999999987554332  3333446689999999999999999999988876


Q ss_pred             EEE
Q psy17058        263 VMN  265 (471)
Q Consensus       263 ~~~  265 (471)
                      ..+
T Consensus        88 ~~~   90 (105)
T d1cs6a2          88 TKS   90 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-11  Score=88.62  Aligned_cols=76  Identities=32%  Similarity=0.460  Sum_probs=57.4

Q ss_pred             EcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCc---c-----cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058         96 VTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM---I-----AGETLIINGITKADEGVYICSIQNAQGNVF  167 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~---~-----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  167 (471)
                      ..+.+..+.+|+++.|.|..+.|.+.+.|++++........   .     ....|.|.+++.+|+|.|+|.|.|     .
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-----G   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-----E
T ss_pred             cCCCCEEEeCCCcEEEEEEECCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec-----c
Confidence            34678899999999999995568889999999433332221   1     345899999999999999999976     3


Q ss_pred             eeeEEEEEe
Q psy17058        168 QDYASIQVD  176 (471)
Q Consensus       168 ~~~~~l~v~  176 (471)
                      ..++.|.|.
T Consensus        80 ~~~a~l~V~   88 (90)
T d1x44a1          80 QSSAKLSVD   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            445666664

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-11  Score=88.09  Aligned_cols=81  Identities=22%  Similarity=0.316  Sum_probs=66.9

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe-------eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY  267 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  267 (471)
                      .++...|.|.+ .|.|.+++.|++++..+..+....+..       ..+.|.|.+++..|.|.|+|.|.|..|..+.++.
T Consensus        15 ~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            57778899999 899999999999998876555443321       1346999999999999999999999999999999


Q ss_pred             EEEEeCCce
Q psy17058        268 IHVLTLPAV  276 (471)
Q Consensus       268 l~V~~~p~~  276 (471)
                      |.|..+|.+
T Consensus        94 v~V~~~P~i  102 (103)
T d1wwbx_          94 AHFMGWPGI  102 (103)
T ss_dssp             ECCSCCCCC
T ss_pred             EEEEeCCCC
Confidence            988877653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.2e-11  Score=89.66  Aligned_cols=84  Identities=17%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee--CCCCCC--eEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK--SNDPSA--TIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~--~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .|+.+.+.|....+.+|+.++|.|.  .+.|.+  .+.|+++ +..+.....    ....|.|..+..+|+|.|+|.|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~-~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG-EKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET-TEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccc-cccccccccccccceEEEEEeeehhHCCCEEEEEEEe
Confidence            5788999999999999999999999  456665  5789999 555433221    456899999999999999999999


Q ss_pred             cCCceeeeeEEEEE
Q psy17058        162 AQGNVFQDYASIQV  175 (471)
Q Consensus       162 ~~~~~~~~~~~l~v  175 (471)
                      ..+. ......+.+
T Consensus        82 ~~g~-~~~~~~~~~   94 (103)
T d1iama1          82 DLRP-QGLELFENT   94 (103)
T ss_dssp             ECGG-GTSCEEEEE
T ss_pred             CCCC-ccCeEeeeE
Confidence            8776 433444444

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6e-11  Score=88.02  Aligned_cols=79  Identities=28%  Similarity=0.378  Sum_probs=63.5

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe------eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI  268 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  268 (471)
                      .+....|.|.+ .|.|.+.++|++++..+..........      ..+.|.|.+++..|+|.|+|.|.|..|..+.++.|
T Consensus        16 ~~~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   94 (105)
T ss_dssp             CCCEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEE
Confidence            34556688888 799999999999998766555443321      13469999999999999999999999999999998


Q ss_pred             EEEeCC
Q psy17058        269 HVLTLP  274 (471)
Q Consensus       269 ~V~~~p  274 (471)
                      .|..+|
T Consensus        95 ~V~~~P  100 (105)
T d1wwca_          95 HFLKEP  100 (105)
T ss_dssp             CCSCCC
T ss_pred             EEEeCC
Confidence            887666

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.15  E-value=6.8e-12  Score=89.93  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             EcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecCCceee
Q psy17058         96 VTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQGNVFQ  168 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~  168 (471)
                      ..+.++.+.+|+++.|.|..+.|.+.+.|+++ +..+.....       ....|.|.+++.+|+|.|+|.|.|..+    
T Consensus         6 ~~l~d~~v~~G~~~~~~c~vs~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----   80 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-GQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----   80 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBCSSSSCCCBCCSS-SCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----
T ss_pred             cCCcCEEEeCCCcEEEEEEECCCCcEEEEEEe-eeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----
Confidence            34578899999999999995578899999999 655544322       456899999999999999999876433    


Q ss_pred             eeEEEEEe
Q psy17058        169 DYASIQVD  176 (471)
Q Consensus       169 ~~~~l~v~  176 (471)
                       ++.|.|.
T Consensus        81 -sa~l~V~   87 (89)
T d1tiua_          81 -AANLKVK   87 (89)
T ss_dssp             -CEEEEEE
T ss_pred             -EEEEEEE
Confidence             4566554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.13  E-value=2.8e-11  Score=85.81  Aligned_cols=78  Identities=17%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      |.+.+.|. ...+.+|++++|.|.+.+.|.+ .+.|++++..+..        ....|.|..++.+|+|.|+|.|.|..+
T Consensus         5 p~i~~~P~-~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           5 AVLKLEPQ-WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT--------HTQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             CEEEEESC-CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT--------CCSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CEEEECCC-CeEEcCCCeEEEEEEEeeccceeEEEeecccccccc--------cccceEEeeccccCCcEEEEECCCCcc
Confidence            34555543 3578899999999999988876 6899999887643        345699999999999999999998766


Q ss_pred             ceEEEEEEEE
Q psy17058        353 TEEKVITVAV  362 (471)
Q Consensus       353 ~~~~~~~l~V  362 (471)
                      +..  +.|.|
T Consensus        76 S~~--v~l~V   83 (85)
T d2fcba1          76 SDP--VHLTV   83 (85)
T ss_dssp             CCC--EEEEE
T ss_pred             ccc--EEEEE
Confidence            554  44544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.12  E-value=4.8e-11  Score=84.29  Aligned_cols=74  Identities=22%  Similarity=0.441  Sum_probs=57.5

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCe-EEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      +|.+.+.|. ...+.+|++++|+|.+.|.|.+. +.|++++..+.        ....+|.|.+++.+|+|.|+|.|.|..
T Consensus         5 kpvi~~~P~-~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           5 KAVVFLEPQ-WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCEEEEESC-CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCEEEECCC-CcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee--------ecceeeEecCCcccCCEEEEEEccCCC
Confidence            455555553 35788999999999999988885 66777776542        334689999999999999999998876


Q ss_pred             CceE
Q psy17058        352 GTEE  355 (471)
Q Consensus       352 g~~~  355 (471)
                      ++..
T Consensus        76 ~S~~   79 (84)
T d1fnla1          76 LSDP   79 (84)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            5543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.11  E-value=9.1e-12  Score=89.24  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=63.7

Q ss_pred             CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .+..++.+.+|+++.|.|.+ +.|.+.+.|+++|..+...  ..........+|.|.+++.+|+|.|+|.|.|..+    
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----   80 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----   80 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----
Confidence            34567889999999999998 5788999999999998643  2333445667899999999999999999977544    


Q ss_pred             EEEEEEec
Q psy17058        357 VITVAVEH  364 (471)
Q Consensus       357 ~~~l~V~~  364 (471)
                      ++.|.|..
T Consensus        81 sa~l~V~e   88 (89)
T d1tiua_          81 AANLKVKE   88 (89)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            35566653

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=85.67  Aligned_cols=79  Identities=22%  Similarity=0.435  Sum_probs=58.7

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      +|.+.+.|. ...+.+|++++|.|.+.+.|.+ .+.|++++..+.        .....|.|.+++.+|+|.|+|.|.|..
T Consensus         1 KP~It~~P~-~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           1 KPKVSLNPP-WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCCEEESS-CSEEETTCCEEEECCTTCC----CCEEEETTEECS--------CCSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCEEEEcCC-CeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee--------cccceeEECCCChhhCCcEEEEecCCC
Confidence            366777664 3578899999999999998887 466788876653        234579999999999999999999876


Q ss_pred             CceEEEEEEEE
Q psy17058        352 GTEEKVITVAV  362 (471)
Q Consensus       352 g~~~~~~~l~V  362 (471)
                      ++..  +.|.|
T Consensus        72 ~S~~--v~l~V   80 (82)
T d1f2qa1          72 ESEP--VYLEV   80 (82)
T ss_dssp             CCCC--EEEEE
T ss_pred             Cccc--EEEEE
Confidence            6554  45555

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-11  Score=90.06  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             EEecCCCcEEEEEEEee-cCC--CeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        284 VSVRPGEPLTLECEATG-RPM--PTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g-~p~--~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ..+.+|+.++|.|.+.| +|.  +++.|++++..+....    ........+.|.|.....+|.|.|+|+|.|..|....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            46889999999999986 544  4899999998875321    1112234567888888888999999999999887766


Q ss_pred             EEEEEEec
Q psy17058        357 VITVAVEH  364 (471)
Q Consensus       357 ~~~l~V~~  364 (471)
                      .+.+.+..
T Consensus        92 ~~~~~~s~   99 (106)
T d1zxqa1          92 NIFHKHSA   99 (106)
T ss_dssp             CEEEEECC
T ss_pred             eeEecccC
Confidence            66666643

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.5e-11  Score=87.36  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=63.7

Q ss_pred             EEcCCeEE---EEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe---------eeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        193 FIVGDRAD---IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ---------ELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       193 v~~g~~~~---L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      +..|....   +.|.+ .|.|.+.+.|++++..+..........         ..+.|.|.++...|.|.|+|.|.|..|
T Consensus         9 ~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           9 LHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             ECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            33444444   55578 899999999999998766554433221         124699999999999999999999999


Q ss_pred             ceEEEEEEEEEeCCc
Q psy17058        261 KEVMNAYIHVLTLPA  275 (471)
Q Consensus       261 ~~~~~~~l~V~~~p~  275 (471)
                      ..+.++.|.|..+|.
T Consensus        88 ~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          88 QASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEEEECCCSCTT
T ss_pred             EEEEEEEEEEEcCCC
Confidence            999999999988774

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.09  E-value=5.3e-11  Score=88.89  Aligned_cols=79  Identities=27%  Similarity=0.420  Sum_probs=61.4

Q ss_pred             EecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCe---EEEEEEEcCCCce
Q psy17058        285 SVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAG---QYKCIGKNSAGTE  354 (471)
Q Consensus       285 ~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~  354 (471)
                      .+.+|+++.|.|.+ .|.|.|.+.|++++..+....      .........+|.|.+++.+|+|   .|+|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            56789999999997 899999999999987764221      1112234568999999988776   7999999999998


Q ss_pred             EEEEEEEEe
Q psy17058        355 EKVITVAVE  363 (471)
Q Consensus       355 ~~~~~l~V~  363 (471)
                      ...+.+.+.
T Consensus        93 ~~~~~~~~i  101 (111)
T d1biha2          93 EVVLVEYEI  101 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            877655444

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.5e-10  Score=84.96  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE--------------eeeceEEEeccCCC
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY--------------QELGVLRFNNIATG  246 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~  246 (471)
                      |.+.........+..|+.++|.|.+ .+.|.+.+.|++++..+.........              ...+.|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4443333333456789999999999 78899999999998765433221111              11346999999999


Q ss_pred             CCe-EEEEEEEcCCCceEEEEEEE
Q psy17058        247 DEG-KYTCIAENSAGKEVMNAYIH  269 (471)
Q Consensus       247 d~G-~Y~C~~~~~~~~~~~~~~l~  269 (471)
                      |.| .|+|.|.|..|..+..+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999888777664

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-10  Score=83.72  Aligned_cols=70  Identities=19%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             eeEEcCCeEEEEEE------ccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058        191 QTFIVGDRADIQCV------LEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE  262 (471)
Q Consensus       191 ~~v~~g~~~~L~C~------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  262 (471)
                      +.+..|....|.|.      + .+.|.+.+.|++++..+........ ..++.|.|.++..+|+|.|+|.|.|..+..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kdg~~l~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKDCKPLLLDNIHFS-GVKDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCB-TTTBCCCCEEEETTEECCCCSSSEE-EETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEcCCcccccc-CCCCCCEEEEEECCccccCCCcEEE-ecCCEEEEcccccccCcEEEEEEEECcCCE
Confidence            45788999999993      3 6888999999999988765544433 336789999999999999999999876654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.8e-10  Score=82.59  Aligned_cols=64  Identities=23%  Similarity=0.432  Sum_probs=53.1

Q ss_pred             eeecCCCcEEEEe------e-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058        101 QSAPEGSQVTIEC------K-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGN  165 (471)
Q Consensus       101 ~~v~~G~~v~l~C------~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~  165 (471)
                      +.+..|....|.|      . .+.|.+.+.|+++ +..+.....    .++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kd-g~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEET-TEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEEC-CccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            4688999999999      3 5788899999999 666543322    5678999999999999999999987765

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=7.5e-10  Score=81.79  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC--------------------CCCcc--cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL--------------------PPNMI--AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~--------------------~~~~~--~~~~L~i~~v~~~  150 (471)
                      +++++.+..+.+|++|.|.|. .......+.|+|......                    .++..  .+++|.|.+++.+
T Consensus         2 vti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~   81 (107)
T d1l6za1           2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK   81 (107)
T ss_dssp             CEEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGG
T ss_pred             cEEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCch
Confidence            445544456889999999998 555567899999622110                    11111  5678999999999


Q ss_pred             CCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        151 DEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       151 D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      |+|.|+|.+.+..+........|.|
T Consensus        82 D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          82 DMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GCEEEEEEEEETTEEECCCCEEECC
T ss_pred             hCEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999998765442333344433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.9e-11  Score=89.85  Aligned_cols=95  Identities=22%  Similarity=0.342  Sum_probs=69.4

Q ss_pred             eeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEee------eceEEEeccCCCC
Q psy17058        176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQE------LGVLRFNNIATGD  247 (471)
Q Consensus       176 ~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~------~~~l~i~~~~~~d  247 (471)
                      .+..||.+.. + ....+.+|+.+.|.|.+....|.+.+.|++++..+....  ++.+...      ...|.|.++...|
T Consensus         3 ~V~~Pp~i~~-~-~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           3 TVNGPPIISS-T-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCSSCCEEE-E-CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             EEecCCEEec-C-CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            3445666543 2 345677999999999994445667899999988754432  2222211      2369999999998


Q ss_pred             -CeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058        248 -EGKYTCIAENSAGKEVMNAYIHVLT  272 (471)
Q Consensus       248 -~G~Y~C~~~~~~~~~~~~~~l~V~~  272 (471)
                       +|.|+|.|.|..|..+..+.|.|..
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             6999999999999999888888764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1e-08  Score=78.56  Aligned_cols=87  Identities=21%  Similarity=0.293  Sum_probs=62.9

Q ss_pred             CCccEEecCCCcEEEEEEEeecC---CCeEEEEeCCccCC---------------Ccc-------cccccCceeEEEEee
Q psy17058        280 PSEYVSVRPGEPLTLECEATGRP---MPTVSWVKYIAPFD---------------RNL-------ERDELTSRAVYTIAS  334 (471)
Q Consensus       280 ~~~~~~~~~g~~v~l~C~~~g~p---~~~i~W~~~~~~~~---------------~~~-------~~~~~~~~~~l~i~~  334 (471)
                      |...+.+.+|++++|.|.+....   ...+.|++.+....               ...       .......+.+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            33446888999999999986422   23699998653211               000       001123467999999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058        335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRP  366 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  366 (471)
                      ++.+|+|.|.|.+.+..+..+..+.|.|.+++
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            99999999999999999989999999998764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.7e-10  Score=81.21  Aligned_cols=74  Identities=19%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-C-CC--CCCeEEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-S-ND--PSATIKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYIC  157 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~-~~--p~~~v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      |..+.+.+.+..+.+|+.++|.|. . +.  |.+.+.|+++ +..+.....         ....|.|.....+|.|.|+|
T Consensus         2 P~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG-NETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             CCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEET-TEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEE
T ss_pred             CcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcC-CEEeeecccceEeecccceeEEEEEeeehhcCCcEEEE
Confidence            344555666678999999999999 3 44  4458999999 544432111         23467888888889999999


Q ss_pred             EEEecCCc
Q psy17058        158 SIQNAQGN  165 (471)
Q Consensus       158 ~~~~~~~~  165 (471)
                      +|.|..+.
T Consensus        81 ~A~n~~~~   88 (106)
T d1zxqa1          81 LAVLDLMS   88 (106)
T ss_dssp             EEEEECGG
T ss_pred             EEEecCCC
Confidence            99997654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.84  E-value=8.7e-10  Score=82.09  Aligned_cols=79  Identities=28%  Similarity=0.337  Sum_probs=59.3

Q ss_pred             eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC------ceEEeeeceEEEeccCCCCCe---EEEEEEEcCCCce
Q psy17058        192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD------VEVYQELGVLRFNNIATGDEG---KYTCIAENSAGKE  262 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~  262 (471)
                      ++.+|+.++|.|.+..+.|.+.+.|+|++..+.....      .......++|.|.+++..|+|   .|.|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            4668999999998757899999999999877533221      111223568999999998776   7999999999887


Q ss_pred             EEEEEEEE
Q psy17058        263 VMNAYIHV  270 (471)
Q Consensus       263 ~~~~~l~V  270 (471)
                      ...+.+.+
T Consensus        93 ~~~~~~~~  100 (111)
T d1biha2          93 EVVLVEYE  100 (111)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEE
Confidence            65544433

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.8e-10  Score=79.29  Aligned_cols=77  Identities=18%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc------------ccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN------------LERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .+....|++|+|.|.+. .|.+.+.|++++..+...            ........+.+|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35678999999999865 688899999988665310            11111234578999999999999999999998


Q ss_pred             CCceEEEEEEEE
Q psy17058        351 AGTEEKVITVAV  362 (471)
Q Consensus       351 ~g~~~~~~~l~V  362 (471)
                      .+..+  +.|.|
T Consensus        83 ~~t~~--~~l~V   92 (93)
T d1ccza1          83 TDTMK--FFLYV   92 (93)
T ss_dssp             CSCEE--EEEEE
T ss_pred             CcEEE--EEEEE
Confidence            77655  45544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-09  Score=79.03  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=51.2

Q ss_pred             CceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC--------------CCcc---cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         99 RQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP--------------PNMI---AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~--------------~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +++....|++|+|.|..+.|.+.+.|+++ +..+.              .+..   .+++|+|.+++.+|+|.|+|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCSSCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCCCCCcEEEEEEe-ccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            35678999999999996678889999998 33221              0000   356899999999999999999987


Q ss_pred             cCCc
Q psy17058        162 AQGN  165 (471)
Q Consensus       162 ~~~~  165 (471)
                      ..+.
T Consensus        82 ~~~t   85 (93)
T d1ccza1          82 ITDT   85 (93)
T ss_dssp             CCSC
T ss_pred             CCcE
Confidence            6554

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.1e-09  Score=74.76  Aligned_cols=75  Identities=11%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCC-------CcccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPP-------NMIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~-------~~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .++|.|.+.|.. .|..|++|+|.|....+...+.|+|++......       .......+.|.+++..|+|.|+|...+
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCCCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            367899999865 588999999999966777899999983321111       011445799999999999999999887


Q ss_pred             cCC
Q psy17058        162 AQG  164 (471)
Q Consensus       162 ~~~  164 (471)
                      ...
T Consensus        84 ~~~   86 (99)
T d1ucta1          84 GHY   86 (99)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=4.4e-08  Score=74.84  Aligned_cols=79  Identities=18%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             EcCCceeecCCCcEEEEee-C---CCCCCeEEEEeCCCCCC------------------CCCcc--------cCcEEEEc
Q psy17058         96 VTPRQQSAPEGSQVTIECK-S---NDPSATIKWSKDNQEQL------------------PPNMI--------AGETLIIN  145 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~---~~p~~~v~W~~~~~~~~------------------~~~~~--------~~~~L~i~  145 (471)
                      ..+..+.+.+|++|+|.|. .   +.....+.|++.+....                  ..+..        ...+|+|.
T Consensus         7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   86 (126)
T d1pkoa_           7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQ   86 (126)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEES
T ss_pred             CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEE
Confidence            3344578999999999998 3   22334699998732210                  00000        24689999


Q ss_pred             CCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058        146 GITKADEGVYICSIQNAQGNVFQDYASIQV  175 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v  175 (471)
                      +++.+|+|.|.|.+.+..+. ......|.|
T Consensus        87 ~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V  115 (126)
T d1pkoa_          87 NVRFSDEGGYTCFFRDHSYQ-EEAAVELKV  115 (126)
T ss_dssp             SCCGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEchhHCeEEEEEEEECCCE-EEEEEEEEE
Confidence            99999999999999987654 444444444

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=73.37  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=55.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC----C--CcccCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP----P--NMIAGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~----~--~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      ++|.|.+.|.. .|..|++|+|.|........+.|+|+ +....    .  .......+.|.+++.+|+|.|+|...+..
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~k~-g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEET-TEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecCCCccEEEEEEC-CCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            57889999866 48899999999996666788999998 43211    1  11134579999999999999999987643

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=9.6e-09  Score=74.40  Aligned_cols=75  Identities=15%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             ceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCC-----------CCc-c--cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058        100 QQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLP-----------PNM-I--AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~-----------~~~-~--~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .+....|++|+|.|. ..  .....|.|+++ +..+.           ... .  .+++|+|.+++.+|+|.|+|.+.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERG-STLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEET-TEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeecc-ccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeC
Confidence            356778999999997 22  23357999997 33221           000 0  5678999999999999999999988


Q ss_pred             CCceeeeeEEEEEe
Q psy17058        163 QGNVFQDYASIQVD  176 (471)
Q Consensus       163 ~~~~~~~~~~l~v~  176 (471)
                      .|. ......+.+.
T Consensus        83 ~g~-~~~~~~~~L~   95 (98)
T d1hnga1          83 NGT-RILNKALDLR   95 (98)
T ss_dssp             TCC-EEEEEEEEEE
T ss_pred             CCC-EEEEEEEEEE
Confidence            887 4334444444

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.72  E-value=3.1e-08  Score=72.70  Aligned_cols=69  Identities=25%  Similarity=0.429  Sum_probs=50.3

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADE  152 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~  152 (471)
                      ++..|..+.+.+|++|+|.|. .+.....+.||+......+               .+..     ....|+|.+++.+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            455688899999999999998 4444457999996221111               1111     446899999999999


Q ss_pred             eEEEEEEEec
Q psy17058        153 GVYICSIQNA  162 (471)
Q Consensus       153 G~Y~C~~~~~  162 (471)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (107)
T d1ospl1          84 ATYFCQQYWS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             CcEEEeeccC
Confidence            9999987543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.72  E-value=3.4e-08  Score=72.59  Aligned_cols=70  Identities=24%  Similarity=0.528  Sum_probs=51.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+......+               .+..     ....|+|.+++.+|
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            4567788899999999999999 4444567999997322111               1111     34589999999999


Q ss_pred             CeEEEEEEEec
Q psy17058        152 EGVYICSIQNA  162 (471)
Q Consensus       152 ~G~Y~C~~~~~  162 (471)
                      +|.|.|.+.+.
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1j1pl_          83 FGMYFCQQANS   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEcCCC
Confidence            99999976543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=9.1e-09  Score=74.52  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=58.0

Q ss_pred             EEecCCCcEEEEEEEe-ecCC-CeEEEEeCCccCCC---------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        284 VSVRPGEPLTLECEAT-GRPM-PTVSWVKYIAPFDR---------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~-g~p~-~~i~W~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +....|++|+|.|... .... ..|.|++++..+..         .........+++|+|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            4567899999999632 2222 37999998765531         01112233457899999999999999999999999


Q ss_pred             ce--EEEEEEEEe
Q psy17058        353 TE--EKVITVAVE  363 (471)
Q Consensus       353 ~~--~~~~~l~V~  363 (471)
                      ..  ++++.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            87  667788775

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=3.2e-08  Score=72.37  Aligned_cols=69  Identities=20%  Similarity=0.404  Sum_probs=50.6

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.|||......+               .+..     ....|.|.+++.+|
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            4566688899999999999999 5555567999986221110               0110     34589999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999997654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.68  E-value=3.5e-08  Score=72.25  Aligned_cols=69  Identities=25%  Similarity=0.447  Sum_probs=50.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      .++..|..+.+.+|++|+|.|. .......+.||+......+               .+..     ....|+|.+++.+|
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            4566788899999999999998 5444557999986211111               1111     33579999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=5.5e-08  Score=73.36  Aligned_cols=71  Identities=27%  Similarity=0.530  Sum_probs=53.0

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC--CCC-CC----------CCc----------c--------c
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN--QEQ-LP----------PNM----------I--------A  138 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~--~~~-~~----------~~~----------~--------~  138 (471)
                      .|.+.+.|..+.+.+|++++|.|. .+.....+.||+..  ... .+          ...          .        .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            478899999999999999999999 55666789999841  110 00          000          0        1


Q ss_pred             CcEEEEcCCCCCCCeEEEEEEEe
Q psy17058        139 GETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus       139 ~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            13799999999999999998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=6.1e-08  Score=71.31  Aligned_cols=69  Identities=23%  Similarity=0.478  Sum_probs=50.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+......+               .+..     ....|+|.+++.+|
T Consensus         3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            4566788899999999999999 5444457999986211111               1111     34579999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+..
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998754

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.65  E-value=6e-08  Score=71.16  Aligned_cols=70  Identities=23%  Similarity=0.460  Sum_probs=51.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      .++..|..+.+.+|++|+|.|. .......+.||+......+               .+..     ....|+|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            5667788999999999999999 5445568999996222111               1111     33479999999999


Q ss_pred             CeEEEEEEEec
Q psy17058        152 EGVYICSIQNA  162 (471)
Q Consensus       152 ~G~Y~C~~~~~  162 (471)
                      +|.|.|.+.+.
T Consensus        83 sA~YyCa~~~~   93 (107)
T d1tjgl1          83 FATYYCQQLHF   93 (107)
T ss_dssp             CSEEEEEECSB
T ss_pred             CceEEEEECcC
Confidence            99999976543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=5.6e-08  Score=71.26  Aligned_cols=69  Identities=25%  Similarity=0.464  Sum_probs=49.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+......               +.+..     ....|+|.+++.+|
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            3556677888999999999998 544445799998621111               11111     33579999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+..
T Consensus        83 sA~YyCa~~~   92 (107)
T d1mexl1          83 LAEYFCQQYN   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             ceeEEEeECC
Confidence            9999997654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=5.9e-08  Score=71.06  Aligned_cols=69  Identities=28%  Similarity=0.474  Sum_probs=50.4

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------------CCCCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------------LPPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------------~~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+.....               .+.+..     ....|+|.+++.+|
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            4566788899999999999998 54444569999962111               011111     33589999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+..
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.64  E-value=7.5e-08  Score=70.48  Aligned_cols=68  Identities=25%  Similarity=0.450  Sum_probs=50.2

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADE  152 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~  152 (471)
                      ++..|..+.+.+|++|+|.|. .......+.||+......+               .+..     ....|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            556788999999999999998 5444556999997322111               1111     335799999999999


Q ss_pred             eEEEEEEEe
Q psy17058        153 GVYICSIQN  161 (471)
Q Consensus       153 G~Y~C~~~~  161 (471)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=9.3e-08  Score=70.05  Aligned_cols=70  Identities=26%  Similarity=0.499  Sum_probs=50.7

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      .++..|..+.+.+|++|+|.|. .......+.||+......+               ....     ....|+|.+++.+|
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            4666788899999999999999 5444557999987222111               0000     23489999999999


Q ss_pred             CeEEEEEEEec
Q psy17058        152 EGVYICSIQNA  162 (471)
Q Consensus       152 ~G~Y~C~~~~~  162 (471)
                      +|.|.|...+.
T Consensus        83 sa~YyCA~~~~   93 (108)
T d1jhll_          83 FAMYICQQHNE   93 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             ceEEEEeeCCC
Confidence            99999976543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=9.4e-08  Score=70.09  Aligned_cols=69  Identities=26%  Similarity=0.508  Sum_probs=50.6

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+......               +.+..     ....|.|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            4566788899999999999999 555556789998721111               11111     33589999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (107)
T d1d5il1          83 MGIYYCLQYD   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEeeecc
Confidence            9999997654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1.3e-07  Score=71.32  Aligned_cols=71  Identities=21%  Similarity=0.475  Sum_probs=48.3

Q ss_pred             EEEcCCceeecCCCcEEEEee-C-C---CCCCeEEEEeCCCCC---------------------CCCCcc-------cCc
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-S-N---DPSATIKWSKDNQEQ---------------------LPPNMI-------AGE  140 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~-~---~p~~~v~W~~~~~~~---------------------~~~~~~-------~~~  140 (471)
                      +...|..+.+..|++|+|.|. . .   .....+.|++.....                     ...+..       ...
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            345678889999999999998 2 2   233479998752110                     001111       235


Q ss_pred             EEEEcCCCCCCCeEEEEEEEecCC
Q psy17058        141 TLIINGITKADEGVYICSIQNAQG  164 (471)
Q Consensus       141 ~L~i~~v~~~D~G~Y~C~~~~~~~  164 (471)
                      +|.|.+++.+|+|.|.|.+.+..+
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC---
T ss_pred             EEEECCCChHHCEEEEEEEEECCC
Confidence            799999999999999999987544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.60  E-value=1.2e-07  Score=69.81  Aligned_cols=70  Identities=24%  Similarity=0.459  Sum_probs=51.1

Q ss_pred             CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKA  150 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~  150 (471)
                      .+++..|..+.+.+|++++|.|. .+.....+.||+.....-+               .+..     ....|+|.+++.+
T Consensus         4 ~~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~   83 (109)
T d1bwwa_           4 IQMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE   83 (109)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC
Confidence            35666788899999999999999 5544567899996222111               1111     2347999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.59  E-value=1.4e-07  Score=70.30  Aligned_cols=71  Identities=24%  Similarity=0.518  Sum_probs=52.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC---------C------c-------ccCcEEEEcCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------N------M-------IAGETLIINGITK  149 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~---------~------~-------~~~~~L~i~~v~~  149 (471)
                      +|+..|..+.+.+|++|+|.|. .......+.||+.....-..         .      .       ....+|.|.+++.
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~   81 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   81 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence            4667788999999999999999 55556689999863211110         0      0       0345799999999


Q ss_pred             CCCeEEEEEEEecC
Q psy17058        150 ADEGVYICSIQNAQ  163 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~  163 (471)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          82 SDSASYICVVSDRG   95 (114)
T ss_dssp             GGCSEEEEEEECSC
T ss_pred             hhCcccceeeecCC
Confidence            99999999987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.9e-07  Score=66.62  Aligned_cols=72  Identities=14%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeC-CCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~-~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ++|.+.+.|.. .|..|++|+|.|.. ......+.|+|++.........  ....+.|.+++.+|+|.|+|.....
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            57899999865 69999999999984 3455689999994332222111  4468999999999999999988654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.1e-07  Score=69.62  Aligned_cols=65  Identities=25%  Similarity=0.523  Sum_probs=47.0

Q ss_pred             cCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGVY  155 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~Y  155 (471)
                      +|+.+.+.+|++|+|.|. .......+.||+......+               .+..     ....|.|.+++.+|+|.|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCc
Confidence            456788999999999999 5445567999987221111               1111     335899999999999999


Q ss_pred             EEEEEe
Q psy17058        156 ICSIQN  161 (471)
Q Consensus       156 ~C~~~~  161 (471)
                      .|....
T Consensus        86 yCa~~~   91 (106)
T d1lk3l1          86 FCQQSW   91 (106)
T ss_dssp             EEEECS
T ss_pred             cccccc
Confidence            997643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.4e-08  Score=71.44  Aligned_cols=62  Identities=24%  Similarity=0.490  Sum_probs=45.5

Q ss_pred             ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc--------cCcEEEEcCCCCCCCeEE
Q psy17058        100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI--------AGETLIINGITKADEGVY  155 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~--------~~~~L~i~~v~~~D~G~Y  155 (471)
                      .+...+|++|+|.|. .......+.|++......               ..+..        .+.+|+|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            356789999999999 666667899998733211               00000        234799999999999999


Q ss_pred             EEEEEe
Q psy17058        156 ICSIQN  161 (471)
Q Consensus       156 ~C~~~~  161 (471)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999864

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.57  E-value=8.9e-08  Score=69.84  Aligned_cols=64  Identities=25%  Similarity=0.487  Sum_probs=46.0

Q ss_pred             CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGVYI  156 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~Y~  156 (471)
                      |+.+++.+|++|+|.|. .......+.|||......+               ....     ....|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            45788999999999998 4444456899987221111               0000     3458999999999999999


Q ss_pred             EEEEe
Q psy17058        157 CSIQN  161 (471)
Q Consensus       157 C~~~~  161 (471)
                      |.+..
T Consensus        85 CA~~~   89 (103)
T d8faba1          85 CQAWD   89 (103)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            97764

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.8e-08  Score=73.51  Aligned_cols=77  Identities=17%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             CceeecCCCcEEEEee-CCCC----CCeEEEEeCCCCCCC----------------------CCcc--------cCcEEE
Q psy17058         99 RQQSAPEGSQVTIECK-SNDP----SATIKWSKDNQEQLP----------------------PNMI--------AGETLI  143 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~~~~~~----------------------~~~~--------~~~~L~  143 (471)
                      ..+.+.+|++++|.|. ...+    ...+.|++.......                      .+..        ....|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3467899999999998 3222    236899874221100                      0000        234799


Q ss_pred             EcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058        144 INGITKADEGVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       144 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |.+++.+|+|.|.|.+.+..+. ......|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence            9999999999999999987655 4545555543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.4e-07  Score=67.45  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=55.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC---CC---cccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP---PN---MIAGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~---~~---~~~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      .++|.|.+.|.. .|..|++|+|.|....+...+.++|+ +....   ..   ......+.|.+++.+|+|.|+|....
T Consensus         2 LPkP~Lsa~Ps~-~V~~G~~VTL~C~~~~~~~~f~L~ke-g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           2 LPKPTLWAEPGS-VITQGSPVTLRCQGGQETQEYRLYRE-KKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCTTCCCEEEEES-SSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeECCC-ccCCCCcEEEEEeCCCCCCEEEEEEC-CCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            357889999864 58999999999996667778999998 43221   11   11567999999999999999998754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.8e-07  Score=69.58  Aligned_cols=69  Identities=17%  Similarity=0.378  Sum_probs=50.0

Q ss_pred             EEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCC----------------CCCcc-------cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQL----------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~----------------~~~~~-------~~~~L~i~~v~  148 (471)
                      |+..|..+.+.+|++|+|.|. . ......+.||+.....-                ..+..       ....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            677889999999999999998 3 33445789998621111                01111       22469999999


Q ss_pred             CCCCeEEEEEEEec
Q psy17058        149 KADEGVYICSIQNA  162 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~  162 (471)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=2e-07  Score=68.44  Aligned_cols=69  Identities=30%  Similarity=0.497  Sum_probs=50.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+.....-+               .+..     ....|.|.+++.+|
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence            4566788999999999999999 5444556999996222111               1111     34589999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|.+..
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998753

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=5.2e-08  Score=71.51  Aligned_cols=68  Identities=26%  Similarity=0.529  Sum_probs=50.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D  151 (471)
                      +++..|..+.+.+|++|+|.|. .......+.||+......               ..+..     ....|+|.+++.+|
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            4666788999999999999999 555556799998722111               01111     34589999999999


Q ss_pred             CeEEEEEEE
Q psy17058        152 EGVYICSIQ  160 (471)
Q Consensus       152 ~G~Y~C~~~  160 (471)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (107)
T d3cx5k1          83 IATYFCQHH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEeeeC
Confidence            999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.54  E-value=1.6e-07  Score=69.10  Aligned_cols=69  Identities=25%  Similarity=0.458  Sum_probs=49.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC-CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND-PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKA  150 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~  150 (471)
                      .++..|..+.+.+|++|+|.|. ... ....+.||+......+               .+..     ....|.|.+++.+
T Consensus         3 vltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           3 VLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE   82 (108)
T ss_dssp             CEECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CEEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence            3556688889999999999998 332 3456899997322111               0000     2347999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998753

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.4e-08  Score=68.32  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCc--ccCcEEEEcCCCCCCCeEEEEEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGVYICSIQ  160 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~~  160 (471)
                      ++|.+.+.|.. .|..|++|+|.|........+.|+|++........  .....+.|.+++.+|+|.|+|...
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCCCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            57889999854 58999999999996667788999998433221111  144689999999999999999654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.7e-07  Score=67.23  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=50.3

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCC---------------CCCCcc-------cCcEEEEcCCCCCCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQ---------------LPPNMI-------AGETLIINGITKADE  152 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~---------------~~~~~~-------~~~~L~i~~v~~~D~  152 (471)
                      ++.+.+.+|++|+|.|. ...  ....+.|+|.....               ...+..       ....|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            34577999999999998 322  23457899851110               001110       334799999999999


Q ss_pred             eEEEEEEEecCCceeeeeEEEEEe
Q psy17058        153 GVYICSIQNAQGNVFQDYASIQVD  176 (471)
Q Consensus       153 G~Y~C~~~~~~~~~~~~~~~l~v~  176 (471)
                      |.|.|.+.............+.|.
T Consensus        83 G~Y~C~v~~~~~~~~~~~~~~~l~  106 (108)
T d1hkfa_          83 GHYWCRIYRPSDNSVSKSVRFYLV  106 (108)
T ss_dssp             EEEEEEEECTTTCCEEEEEEEEEE
T ss_pred             EEEEEEEecCCCCcEEEeeEEEEE
Confidence            999999876544423334444443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.2e-07  Score=67.22  Aligned_cols=87  Identities=14%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...|.  ..+..|++|+|.|... .+...+.|++++........   .........+.|.+++.+|+|.|+|...+
T Consensus         7 kPsLsa~P~--~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           7 MPFISAKSS--PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCEEESSC--SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCC--CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            466666654  3678899999999875 55668999998764322111   11223556899999999999999999998


Q ss_pred             CCCceE--EEEEEEE
Q psy17058        350 SAGTEE--KVITVAV  362 (471)
Q Consensus       350 ~~g~~~--~~~~l~V  362 (471)
                      ......  ..+.|.|
T Consensus        84 ~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          84 GHYRFRYSDTLELVV   98 (99)
T ss_dssp             TTTEEEECCCEEEEE
T ss_pred             CCcccCCCCCEEEEe
Confidence            776443  2355544

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.50  E-value=2.5e-07  Score=68.29  Aligned_cols=70  Identities=23%  Similarity=0.490  Sum_probs=50.3

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCC------------------CCCcc------cCcEEEEcCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQL------------------PPNMI------AGETLIINGI  147 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~------------------~~~~~------~~~~L~i~~v  147 (471)
                      ..|+..|....+.+|++++|.|........+.|||.....-                  .....      ....|+|.++
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            35677788999999999999999222346799999621110                  01100      3457999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.7e-07  Score=68.60  Aligned_cols=70  Identities=19%  Similarity=0.440  Sum_probs=50.9

Q ss_pred             cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCC-CC--------------------CCcc-----cCcEEEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQ-LP--------------------PNMI-----AGETLII  144 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~-~~--------------------~~~~-----~~~~L~i  144 (471)
                      ++++.|.+.++.+|++|+|.|.  .+.....+.|||..... ..                    .+..     ....|+|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            5778899999999999999998  33344569999962111 10                    0000     2347999


Q ss_pred             cCCCCCCCeEEEEEEEec
Q psy17058        145 NGITKADEGVYICSIQNA  162 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~  162 (471)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999998643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.49  E-value=2.2e-07  Score=69.08  Aligned_cols=71  Identities=21%  Similarity=0.490  Sum_probs=51.9

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-------cCcEEEEcCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-------AGETLIINGITK  149 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-------~~~~L~i~~v~~  149 (471)
                      .|+..|..+.+.+|++|+|.|. .......+.|||.....-.               .+..       ....|+|.+++.
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            3566788899999999999999 5555567999995211100               0000       345899999999


Q ss_pred             CCCeEEEEEEEecC
Q psy17058        150 ADEGVYICSIQNAQ  163 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~  163 (471)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          82 GDSATYLCAVRPTS   95 (113)
T ss_dssp             GGCEEEEEEEEESS
T ss_pred             CCCcEEeEeEecCC
Confidence            99999999987544

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.49  E-value=3.7e-07  Score=67.94  Aligned_cols=70  Identities=19%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------------CCCcc-------cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      |+..|..+.+.+|++|+|.|. .......+.|||.....-               ..+..       ....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            566677889999999999999 545556799998621110               00000       3457999999999


Q ss_pred             CCeEEEEEEEecC
Q psy17058        151 DEGVYICSIQNAQ  163 (471)
Q Consensus       151 D~G~Y~C~~~~~~  163 (471)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999876543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.3e-07  Score=66.23  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=61.3

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-cccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      +|.+...|..  .+..|++|+|.|... .+...+.|++++....... ..........|.|.+++.+|+|.|+|...+..
T Consensus         4 KPsLsa~P~~--~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           4 KPFIWAEPHF--MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeeCCC--cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            4556666543  577999999999865 4456899999886533211 11223456789999999999999999998865


Q ss_pred             Cce--EEEEEEEEe
Q psy17058        352 GTE--EKVITVAVE  363 (471)
Q Consensus       352 g~~--~~~~~l~V~  363 (471)
                      +..  +..+.|.|.
T Consensus        81 ~~S~~Sd~leL~VT   94 (95)
T d1olla1          81 LWSEPSNLLDLVVT   94 (95)
T ss_dssp             EECCCCCCEEEEEE
T ss_pred             CccCCCCCEEEEEe
Confidence            533  444666654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.48  E-value=2.5e-07  Score=68.88  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=50.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC----------CC------cc-------cCcEEEEcCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP----------PN------MI-------AGETLIINGI  147 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~----------~~------~~-------~~~~L~i~~v  147 (471)
                      .|+..|..+.+.+|++|+|.|.  .+.....+.||+.....-+          ..      ..       ....|.|.++
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS   81 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence            3566678889999999999998  3444456899985211100          00      00       2347999999


Q ss_pred             CCCCCeEEEEEEEecCC
Q psy17058        148 TKADEGVYICSIQNAQG  164 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~~  164 (471)
                      +.+|+|.|.|.+....+
T Consensus        82 ~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          82 QVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             CGGGCEEEEEEEECSBT
T ss_pred             ccccCCCceEeCCCCCC
Confidence            99999999998765443

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.48  E-value=2.4e-07  Score=68.69  Aligned_cols=69  Identities=22%  Similarity=0.361  Sum_probs=50.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-C--CCCCCeEEEEeCCCCCCCC-------Ccc-------cCcEEEEcCCCCCCCeEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-S--NDPSATIKWSKDNQEQLPP-------NMI-------AGETLIINGITKADEGVY  155 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~--~~p~~~v~W~~~~~~~~~~-------~~~-------~~~~L~i~~v~~~D~G~Y  155 (471)
                      .|+..|..+.+.+|++|+|.|. .  ......+.||+......+.       +..       ....|+|.+++.+|+|.|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            4677788999999999999997 3  2345679999862211110       110       234899999999999999


Q ss_pred             EEEEEe
Q psy17058        156 ICSIQN  161 (471)
Q Consensus       156 ~C~~~~  161 (471)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            999864

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.47  E-value=3.8e-07  Score=67.98  Aligned_cols=67  Identities=16%  Similarity=0.333  Sum_probs=47.9

Q ss_pred             EEcCCceeecCCCcEEEEee-CC-CCCCeEEEEeCCC----CC------------------CCCCc--------ccCcEE
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQ----EQ------------------LPPNM--------IAGETL  142 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~----~~------------------~~~~~--------~~~~~L  142 (471)
                      ...|..+.+.+|++|+|.|. .+ .....+.||+...    ..                  +....        .....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            34677889999999999999 43 4456799998511    00                  00100        034589


Q ss_pred             EEcCCCCCCCeEEEEEEEe
Q psy17058        143 IINGITKADEGVYICSIQN  161 (471)
Q Consensus       143 ~i~~v~~~D~G~Y~C~~~~  161 (471)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.46  E-value=2.7e-07  Score=67.25  Aligned_cols=67  Identities=21%  Similarity=0.438  Sum_probs=48.1

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCe
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEG  153 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G  153 (471)
                      ++..|..+.+.+|++|+|.|..+.....+.||+......+               ....     ....|.|.+++.+|+|
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            5667888999999999999993233445899997221111               1111     3357999999999999


Q ss_pred             EEEEEEE
Q psy17058        154 VYICSIQ  160 (471)
Q Consensus       154 ~Y~C~~~  160 (471)
                      .|.|...
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.46  E-value=4.4e-07  Score=66.83  Aligned_cols=70  Identities=23%  Similarity=0.413  Sum_probs=48.9

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CC----CCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SN----DPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGI  147 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~----~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v  147 (471)
                      +++..|..+.+.+|++|+|.|. +.    .....+.||+......+               .+..     ....|+|.++
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~   82 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPV   82 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccc
Confidence            4566788899999999999997 22    12234899997211111               1111     3458999999


Q ss_pred             CCCCCeEEEEEEEec
Q psy17058        148 TKADEGVYICSIQNA  162 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~  162 (471)
                      +.+|+|.|.|.+...
T Consensus        83 ~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          83 EEEDAATYYCSHIRE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             cccCCceEEEEECCC
Confidence            999999999976543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.8e-07  Score=71.00  Aligned_cols=81  Identities=26%  Similarity=0.407  Sum_probs=57.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCC----eEEEEeCCccCC-------------------Ccc--c-----ccccCceeEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP----TVSWVKYIAPFD-------------------RNL--E-----RDELTSRAVYTI  332 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~----~i~W~~~~~~~~-------------------~~~--~-----~~~~~~~~~l~i  332 (471)
                      .+.+.+|+++.|.|.....+..    .+.|++......                   ...  +     ........+|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            4577899999999998754332    588987422210                   000  0     001123468999


Q ss_pred             eecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058        333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVE  363 (471)
Q Consensus       333 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  363 (471)
                      .+++.+|+|.|.|.+.+..|..+..+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999999888888888874

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=3.8e-07  Score=67.29  Aligned_cols=65  Identities=26%  Similarity=0.479  Sum_probs=46.2

Q ss_pred             CCceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCCCC--------C-----c-------ccCcEEEEcCCCCCCCeEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQLPP--------N-----M-------IAGETLIINGITKADEGVY  155 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~~~--------~-----~-------~~~~~L~i~~v~~~D~G~Y  155 (471)
                      |+++.+.+|++|+|.|. .. .....+.||+......+.        .     .       .....|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            56788999999999998 33 344568999962211110        0     0       0345799999999999999


Q ss_pred             EEEEEec
Q psy17058        156 ICSIQNA  162 (471)
Q Consensus       156 ~C~~~~~  162 (471)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.45  E-value=3e-07  Score=68.57  Aligned_cols=71  Identities=17%  Similarity=0.356  Sum_probs=50.4

Q ss_pred             cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCC-CCCC-----------------CCCcc-------cCcEEEEc
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDN-QEQL-----------------PPNMI-------AGETLIIN  145 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~-~~~~-----------------~~~~~-------~~~~L~i~  145 (471)
                      +|+..|..+.+.+|++|+|.|.  .......+.||+.. +...                 ..+..       ....|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            3566788899999999999998  34455689999841 1100                 01110       12379999


Q ss_pred             CCCCCCCeEEEEEEEecC
Q psy17058        146 GITKADEGVYICSIQNAQ  163 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~~  163 (471)
                      +++.+|+|.|.|.+....
T Consensus        82 ~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             SCCGGGCEEEEEEEECTT
T ss_pred             CccccccccceeeEecCC
Confidence            999999999999877543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.44  E-value=2.7e-07  Score=68.28  Aligned_cols=68  Identities=19%  Similarity=0.386  Sum_probs=49.1

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC---------------Ccc-------cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------------NMI-------AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~---------------~~~-------~~~~L~i~~v~~~  150 (471)
                      |+..|..+.+.+|++|+|.|. .......+.||+......+.               +..       ....|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            455678889999999999998 44444569999862111110               000       2347999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.44  E-value=4.4e-07  Score=65.23  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=54.1

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ++|.+.+.|.. .|..|++|+|.|....+...+.|+|+ |........      ....+.|..++..|+|.|+|.....
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~k~-g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRSSYDMYHLSRE-GEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESSCCSEEEEEET-TCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCCCccEEEEEEC-CCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            67899999855 68999999999996667788999999 433321111      2345788899999999999987643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.43  E-value=3.8e-07  Score=67.27  Aligned_cols=70  Identities=21%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             cEEEcCCceeecCCCcEEEEee-C-CC---CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-S-ND---PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGI  147 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~-~~---p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v  147 (471)
                      +++..|..+.+.+|++|+|.|. . +.   ....+.||+......+               .+..     ....|.|.++
T Consensus         3 ~ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   82 (111)
T d1j05a_           3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC
T ss_pred             CEEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc
Confidence            3556688889999999999997 2 22   2234999997221111               0000     3458999999


Q ss_pred             CCCCCeEEEEEEEec
Q psy17058        148 TKADEGVYICSIQNA  162 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~  162 (471)
                      +.+|+|.|.|.+.+.
T Consensus        83 ~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          83 EADDVATYYCQQTNE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCccEEEeecCC
Confidence            999999999987543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.42  E-value=3.7e-07  Score=68.06  Aligned_cols=69  Identities=26%  Similarity=0.408  Sum_probs=49.3

Q ss_pred             EEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCC------------C----CCcc-------cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL------------P----PNMI-------AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~------------~----~~~~-------~~~~L~i~~v~  148 (471)
                      |+..|..+.+.+|++|+|.|.  .+.....+.||+.....-            .    .+..       ....|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            566678899999999999998  344455689998621100            0    0000       23479999999


Q ss_pred             CCCCeEEEEEEEec
Q psy17058        149 KADEGVYICSIQNA  162 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~  162 (471)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          82 IEDSAVYFCAMRGD   95 (115)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccccccccceeecC
Confidence            99999999988654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.41  E-value=7.1e-07  Score=65.91  Aligned_cols=69  Identities=25%  Similarity=0.418  Sum_probs=49.1

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC-----CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND-----PSATIKWSKDNQEQLP---------------PNMI-----AGETLIING  146 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~-----p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~  146 (471)
                      .++..|..+.+.+|++|+|.|. .+.     ....+.||+......+               .+..     ....|+|.+
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~   83 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   83 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESS
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCC
Confidence            4566788899999999999998 322     2246999997221111               1111     335899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy17058        147 ITKADEGVYICSIQN  161 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~  161 (471)
                      ++.+|+|.|.|...+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999996543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.41  E-value=3.9e-07  Score=67.14  Aligned_cols=70  Identities=26%  Similarity=0.445  Sum_probs=50.3

Q ss_pred             cEEEcCCceeecCCCcEEEEee-C--CCCCCeEEEEeCCCCCCCC-------Ccc-------cCcEEEEcCCCCCCCeEE
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-S--NDPSATIKWSKDNQEQLPP-------NMI-------AGETLIINGITKADEGVY  155 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~--~~p~~~v~W~~~~~~~~~~-------~~~-------~~~~L~i~~v~~~D~G~Y  155 (471)
                      +|+..|..+.+.+|++++|.|. .  ......+.||+.....-+.       +..       ....|+|.+++.+|+|.|
T Consensus         1 rV~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           1 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEE
Confidence            3567788899999999999997 3  3345679999862111110       000       234899999999999999


Q ss_pred             EEEEEec
Q psy17058        156 ICSIQNA  162 (471)
Q Consensus       156 ~C~~~~~  162 (471)
                      .|.+...
T Consensus        81 yCA~~~~   87 (112)
T d1sq2n_          81 RCGLGVA   87 (112)
T ss_dssp             EEEECBT
T ss_pred             eEEEecC
Confidence            9987643

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.4e-07  Score=69.29  Aligned_cols=77  Identities=13%  Similarity=0.096  Sum_probs=52.9

Q ss_pred             ecCCCcEEEEEEEeecCCCeEEEEeCCccCCC------------------cccccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058        286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDR------------------NLERDELTSRAVYTIASVRESDAGQYKCIG  347 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  347 (471)
                      +.+|++|.|.|.........+.|+|.......                  ...+.....+++|.|.+++.+|+|.|+|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            56899999999743233458999986543210                  011222345678999999999999999999


Q ss_pred             EcCCC-ceEEEEEEEE
Q psy17058        348 KNSAG-TEEKVITVAV  362 (471)
Q Consensus       348 ~n~~g-~~~~~~~l~V  362 (471)
                      .+..+ ..+.++.|.|
T Consensus        91 ~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          91 TDENYRRTQATVRFHV  106 (107)
T ss_dssp             EETTEEECCCCEEECC
T ss_pred             EECCCCEEEEEEEEEE
Confidence            88764 4455566655

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=1.2e-06  Score=64.84  Aligned_cols=68  Identities=24%  Similarity=0.435  Sum_probs=48.6

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCC-------------------CCCcc------cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQL-------------------PPNMI------AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~-------------------~~~~~------~~~~L~i~~v~  148 (471)
                      |+..|..+.+.+|++++|.|........+.||+.....-                   ..+..      ....|+|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            455678888999999999998333446799999621110                   00000      33589999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=7.6e-07  Score=65.76  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-------cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-------AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-------~~~~L~i~~v~~~  150 (471)
                      |...|..+.+.+|++|+|.|. .......+.||+......+               .+..       ....|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            556678888999999999998 5445567899996211111               0000       3458999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=6.6e-07  Score=66.29  Aligned_cols=71  Identities=21%  Similarity=0.416  Sum_probs=50.2

Q ss_pred             cEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC-------------CC--------cccCcEEEEcCCCCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP-------------PN--------MIAGETLIINGITKAD  151 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~-------------~~--------~~~~~~L~i~~v~~~D  151 (471)
                      .|+..|..+.+.+|++++|.|........+.||+.....-+             ..        ......|.|.+++.+|
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            45667889999999999999992223457999996211100             00        0033479999999999


Q ss_pred             CeEEEEEEEecC
Q psy17058        152 EGVYICSIQNAQ  163 (471)
Q Consensus       152 ~G~Y~C~~~~~~  163 (471)
                      +|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (113)
T d1h5ba_          83 SGTYFCAAEASS   94 (113)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEEecCCC
Confidence            999999886543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.40  E-value=7.2e-07  Score=65.68  Aligned_cols=68  Identities=26%  Similarity=0.456  Sum_probs=47.4

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC-----CCCeEEEEeCCCCC---------------CCCCcc-----cCcEEEEcC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND-----PSATIKWSKDNQEQ---------------LPPNMI-----AGETLIING  146 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~-----p~~~v~W~~~~~~~---------------~~~~~~-----~~~~L~i~~  146 (471)
                      .++..|..+.+.+|++|+|.|. ...     ...-+.||+.....               .+.+..     ....|.|.+
T Consensus         3 ~lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~   82 (112)
T d1ncwl1           3 VMTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISR   82 (112)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECc
Confidence            3556688899999999999997 321     22458999872111               111111     234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy17058        147 ITKADEGVYICSIQ  160 (471)
Q Consensus       147 v~~~D~G~Y~C~~~  160 (471)
                      ++.+|+|.|.|...
T Consensus        83 ~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          83 VEAEDLGVYYCWQG   96 (112)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCcCEeEEEEcC
Confidence            99999999999654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.39  E-value=4.4e-07  Score=67.57  Aligned_cols=68  Identities=19%  Similarity=0.334  Sum_probs=48.2

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC--------CCc---------------ccCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------PNM---------------IAGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~--------~~~---------------~~~~~L~i~~v~~  149 (471)
                      |+..|..+.+.+|++|+|.|. .......+.||+.....-+        ...               .....|+|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            455566789999999999998 4444567889985111110        000               0335799999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|+|.|.|.+..
T Consensus        83 ~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 SDSAVYFCAVSG   94 (115)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceecccccC
Confidence            999999998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=9.4e-07  Score=65.98  Aligned_cols=70  Identities=24%  Similarity=0.437  Sum_probs=50.7

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC--------------------CCCcc------cCcEEEEc
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL--------------------PPNMI------AGETLIIN  145 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~--------------------~~~~~------~~~~L~i~  145 (471)
                      .|+..|....+.+|++|+|.|. .+.....+.|||.....-                    .....      ....|+|.
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            3666788889999999999998 555556899999621110                    00100      22479999


Q ss_pred             CCCCCCCeEEEEEEEec
Q psy17058        146 GITKADEGVYICSIQNA  162 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~~  162 (471)
                      +++.+|+|.|.|.+...
T Consensus        83 ~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccccccCceEEEEEecC
Confidence            99999999999988654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=7.3e-07  Score=65.32  Aligned_cols=68  Identities=24%  Similarity=0.524  Sum_probs=46.5

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCC---CCeEEEEeCCCC---------------CCCCCcc-----cCcEEEEcCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDP---SATIKWSKDNQE---------------QLPPNMI-----AGETLIINGIT  148 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~~~---------------~~~~~~~-----~~~~L~i~~v~  148 (471)
                      .++. |+++.+.+|++++|.|. .+..   ...+.||+....               ....+..     ....|.|.+++
T Consensus         3 ~~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~   81 (110)
T d1oaql_           3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQ   81 (110)
T ss_dssp             CEEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCC
T ss_pred             CEee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCC
Confidence            3444 44788999999999998 3322   123889985211               0111111     44689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (110)
T d1oaql_          82 TEDEAIYFCALWY   94 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccEeEEEEccc
Confidence            9999999998764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=1.6e-06  Score=63.97  Aligned_cols=68  Identities=21%  Similarity=0.396  Sum_probs=48.1

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCC-------------------CCCcc------cCcEEEEcCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQL-------------------PPNMI------AGETLIINGIT  148 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~-------------------~~~~~------~~~~L~i~~v~  148 (471)
                      |+..|..+.+.+|++|+|.|........+.|||.....-                   .....      ....|+|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             cEECCCEEEECCCCCEEEEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            455678889999999999998323345799998721110                   00000      23589999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=69.45  Aligned_cols=67  Identities=18%  Similarity=0.343  Sum_probs=45.4

Q ss_pred             cCCceeecCCCcEEEEee-CCC---CCCeEEEEeCCCCCC---------------CCCcc-------cCcEEEEcCCCCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND---PSATIKWSKDNQEQL---------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~---p~~~v~W~~~~~~~~---------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      .|..+.+.+|++|+|.|. ...   ....+.|+|......               ..+..       ...+|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            567888999999999998 322   224578988621111               00000       2348999999999


Q ss_pred             CCeEEEEEEEecC
Q psy17058        151 DEGVYICSIQNAQ  163 (471)
Q Consensus       151 D~G~Y~C~~~~~~  163 (471)
                      |+|.|.|.+....
T Consensus        85 DsG~Y~C~v~~~~   97 (116)
T d1xeda_          85 DSGRYKCGLGINS   97 (116)
T ss_dssp             GCEEEEEEESCGG
T ss_pred             CCEEEEEEEEcCC
Confidence            9999999886443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.7e-07  Score=65.52  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             EecCCCcEEEEEEEee-cCCC--eEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-
Q psy17058        285 SVRPGEPLTLECEATG-RPMP--TVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-  354 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  354 (471)
                      .+.+|+.++|+|.+.+ +|.+  .+.|++++..+.....      .......+.|++.....++...|+|+|+|..+.. 
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence            3678999999999976 7754  6899998877642211      1112233567776666666669999999886542 


Q ss_pred             ------EEEEEEEEecCC
Q psy17058        355 ------EKVITVAVEHRP  366 (471)
Q Consensus       355 ------~~~~~l~V~~~p  366 (471)
                            .....|.|.+.|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                  334567776653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=1.9e-06  Score=63.86  Aligned_cols=83  Identities=24%  Similarity=0.527  Sum_probs=55.0

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC---------------CCc-------ccCcEEEEcCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP---------------PNM-------IAGETLIINGITKAD  151 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~---------------~~~-------~~~~~L~i~~v~~~D  151 (471)
                      ++..|..+.+.+|++++|.|........+.||+.....-+               .+.       .....|+|.+++.+|
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            5566888999999999999992223457999996221111               000       034589999999999


Q ss_pred             CeEEEEEEEecCCc-eeeeeEEEEEe
Q psy17058        152 EGVYICSIQNAQGN-VFQDYASIQVD  176 (471)
Q Consensus       152 ~G~Y~C~~~~~~~~-~~~~~~~l~v~  176 (471)
                      +|.|.|.+....+. .......|.|.
T Consensus        83 sa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          83 TGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             CEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             eeeEcccccCCCCCcEECCCEEEEEe
Confidence            99999987644332 12334455554

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.35  E-value=9.6e-07  Score=65.12  Aligned_cols=67  Identities=24%  Similarity=0.432  Sum_probs=46.8

Q ss_pred             EEEcCCceeecCCCcEEEEee-CC-----CCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SN-----DPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGI  147 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~-----~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v  147 (471)
                      ++..|..+.+.+|++|+|.|. .+     .....+.||+......+               .+..     ....|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            455577888999999999997 32     22456899987222111               0111     3347999999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|+|.|.|...
T Consensus        84 ~~~DsAvYyCa~~   96 (112)
T d1mjul1          84 EAEDVGVYYCLQH   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCceEEEEeC
Confidence            9999999999543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=2.5e-07  Score=68.95  Aligned_cols=68  Identities=26%  Similarity=0.491  Sum_probs=48.9

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADE  152 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~  152 (471)
                      ++..|..+.+.+|++++|.|. .......+.||+.....-+               ....     ....|.|.+++.+|+
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            445677888999999999999 4444457999997221111               1111     234799999999999


Q ss_pred             eEEEEEEEe
Q psy17058        153 GVYICSIQN  161 (471)
Q Consensus       153 G~Y~C~~~~  161 (471)
                      |.|.|.+..
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999997654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-06  Score=64.57  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             eEEcCCeEEEEEEccCCCCCC--eEEEEeCCCCCCcC------CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc--
Q psy17058        192 TFIVGDRADIQCVLEAGEPSP--TQTWIRPDNDGKFG------PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK--  261 (471)
Q Consensus       192 ~v~~g~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--  261 (471)
                      .+.+|+.++|.|.+..+.|.+  .++|++++..+...      .........+.|.+.....+++..|+|+|.+..+.  
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence            467999999999997778865  79999987653211      11111222345677665556666999999987543  


Q ss_pred             -----eEEEEEEEEEeCC
Q psy17058        262 -----EVMNAYIHVLTLP  274 (471)
Q Consensus       262 -----~~~~~~l~V~~~p  274 (471)
                           ......|.|.++|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                 2445668887765

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=1e-06  Score=65.35  Aligned_cols=69  Identities=19%  Similarity=0.373  Sum_probs=48.9

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC------------------CCc------ccCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP------------------PNM------IAGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~------------------~~~------~~~~~L~i~~v~~  149 (471)
                      |+..|..+.+.+|++|+|.|..+.....+.||+.....-+                  ...      .....|.|.+++.
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEecCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            4455778899999999999993334567999987221100                  000      0334799999999


Q ss_pred             CCCeEEEEEEEec
Q psy17058        150 ADEGVYICSIQNA  162 (471)
Q Consensus       150 ~D~G~Y~C~~~~~  162 (471)
                      +|+|.|.|.+...
T Consensus        82 ~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 NPTAFYLCASSSR   94 (114)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             CCceeEEEeeccC
Confidence            9999999977643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=66.12  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeCCccCC------------Ccc-------cccccCceeEEEEeecCCCCCeEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD------------RNL-------ERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~------------~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      +...+|++++|.|.........+.|++......            ...       .......+.+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            456789999999998765556899998543211            000       0011223467999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy17058        345 CIGKNSAGTEEKVITVAV  362 (471)
Q Consensus       345 C~a~n~~g~~~~~~~l~V  362 (471)
                      |.+.+    .+..+.|.|
T Consensus        84 C~v~~----~~~~v~L~V   97 (97)
T d2nxyb1          84 CEVED----QKEEVQLLV   97 (97)
T ss_dssp             EEETT----EEEEEEEEE
T ss_pred             EEEec----CCeEEEEEC
Confidence            99965    344555544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.32  E-value=5.3e-07  Score=67.13  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC--------C--------Ccc-------cCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------P--------NMI-------AGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~--------~--------~~~-------~~~~L~i~~v~~  149 (471)
                      |+..|..+.+.+|++|+|.|. .......+.||+......+        .        ...       ....|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            555677889999999999999 4444567999986211100        0        000       234799999999


Q ss_pred             CCCeEEEEEEEec
Q psy17058        150 ADEGVYICSIQNA  162 (471)
Q Consensus       150 ~D~G~Y~C~~~~~  162 (471)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=1.3e-06  Score=63.85  Aligned_cols=67  Identities=25%  Similarity=0.483  Sum_probs=47.3

Q ss_pred             cCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGVY  155 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~Y  155 (471)
                      +|+.+.+.+|++|+|.|. .......+.||+.......               ....     ....|.|.+++.+|+|.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            345678999999999999 4434457999987221111               1110     344899999999999999


Q ss_pred             EEEEEecC
Q psy17058        156 ICSIQNAQ  163 (471)
Q Consensus       156 ~C~~~~~~  163 (471)
                      .|.+....
T Consensus        86 yCA~~~~~   93 (109)
T d1w72l1          86 YCQVWDSR   93 (109)
T ss_dssp             EEEEEETT
T ss_pred             EEEecCCC
Confidence            99876543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.7e-06  Score=61.84  Aligned_cols=73  Identities=14%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc--------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI--------AGETLIINGITKADEGVYICSIQN  161 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~~~~  161 (471)
                      ..|.+.+.|.. .|..|++|+|.|........+.++|++.........        ....+.|.+++.+|+|.|+|....
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            57889999855 599999999999966677889999984432221110        235799999999999999998765


Q ss_pred             cC
Q psy17058        162 AQ  163 (471)
Q Consensus       162 ~~  163 (471)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.31  E-value=2.2e-06  Score=63.11  Aligned_cols=66  Identities=29%  Similarity=0.543  Sum_probs=46.6

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCe
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEG  153 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G  153 (471)
                      +|+++.+.+|++++|.|. .+.  ....+.||+.......               .+..     ....|.|.+++.+|+|
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            355788999999999998 332  2346999987211111               1111     3468999999999999


Q ss_pred             EEEEEEEec
Q psy17058        154 VYICSIQNA  162 (471)
Q Consensus       154 ~Y~C~~~~~  162 (471)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.30  E-value=9.9e-07  Score=65.19  Aligned_cols=69  Identities=25%  Similarity=0.469  Sum_probs=48.2

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC------CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEc
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND------PSATIKWSKDNQEQLP---------------PNMI-----AGETLIIN  145 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~------p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~  145 (471)
                      +++..|..+.+.+|++|+|.|. .+.      ....+.||+......+               ....     ....|.|.
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~   82 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT   82 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence            4566688899999999999997 321      1235999997221111               0100     33479999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy17058        146 GITKADEGVYICSIQN  161 (471)
Q Consensus       146 ~v~~~D~G~Y~C~~~~  161 (471)
                      +++.+|+|.|.|.+..
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999997653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.29  E-value=3.4e-06  Score=62.10  Aligned_cols=65  Identities=29%  Similarity=0.555  Sum_probs=46.2

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeE
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGV  154 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~  154 (471)
                      |+++.+.+|++|+|.|. .+.  ....+.||+......+               .+..     ....|.|.+++.+|+|.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            34678999999999998 332  3457999997322111               1111     34589999999999999


Q ss_pred             EEEEEEec
Q psy17058        155 YICSIQNA  162 (471)
Q Consensus       155 Y~C~~~~~  162 (471)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (114)
T d2rhea_          87 YYCAAWND   94 (114)
T ss_dssp             EEEEEEET
T ss_pred             EEEeecCC
Confidence            99987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.27  E-value=1.5e-06  Score=64.04  Aligned_cols=65  Identities=28%  Similarity=0.572  Sum_probs=46.0

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCC---------------CCCCcc-------cCcEEEEcCCCCCC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQ---------------LPPNMI-------AGETLIINGITKAD  151 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~---------------~~~~~~-------~~~~L~i~~v~~~D  151 (471)
                      +|..+++.+|++|+|.|. .+.  ...-+.|||.....               ..++..       ....|.|.+++.+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            466788999999999998 433  23459999972111               111111       34589999999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      +|.|.|....
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=2.3e-06  Score=63.16  Aligned_cols=68  Identities=19%  Similarity=0.409  Sum_probs=48.2

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCc------ccCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNM------IAGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~------~~~~~L~i~~v~~  149 (471)
                      |+..|....+.+|++++|.|........+.||+.....                  .....      .....|.|.+++.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             eEECCCeEEECCCCCEEEEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            45567788899999999999822334679999961110                  00000      0335799999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=1.5e-06  Score=64.43  Aligned_cols=69  Identities=23%  Similarity=0.482  Sum_probs=48.5

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v~~  149 (471)
                      |+..|..+.+.+|++|+|.|........+.||+.....                  ...+..      ....|+|.+++.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            44567788999999999999922234579999951110                  001110      235799999999


Q ss_pred             CCCeEEEEEEEec
Q psy17058        150 ADEGVYICSIQNA  162 (471)
Q Consensus       150 ~D~G~Y~C~~~~~  162 (471)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          82 GDSALYLCASSLA   94 (113)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             ccceeeeeeeeCC
Confidence            9999999987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.26  E-value=3.3e-06  Score=62.22  Aligned_cols=66  Identities=23%  Similarity=0.523  Sum_probs=46.6

Q ss_pred             CCceeecCCCcEEEEee-CCC---CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCe
Q psy17058         98 PRQQSAPEGSQVTIECK-SND---PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEG  153 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~---p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G  153 (471)
                      |.++.+.+|++|+|.|. .+.   ....+.||+.......               ....     ....|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            67888999999999998 332   2345899996211111               0000     3458999999999999


Q ss_pred             EEEEEEEecC
Q psy17058        154 VYICSIQNAQ  163 (471)
Q Consensus       154 ~Y~C~~~~~~  163 (471)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999876543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1.2e-06  Score=64.49  Aligned_cols=69  Identities=22%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC---------------CCcc-------cCcEEEEcCCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------------PNMI-------AGETLIINGITKA  150 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~---------------~~~~-------~~~~L~i~~v~~~  150 (471)
                      |+..|..+.+.+|++|+|.|. .......+.||+......+               .+..       ....|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            566788899999999999998 4444457999996211110               0000       3457999999999


Q ss_pred             CCeEEEEEEEec
Q psy17058        151 DEGVYICSIQNA  162 (471)
Q Consensus       151 D~G~Y~C~~~~~  162 (471)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.25  E-value=1.3e-06  Score=63.83  Aligned_cols=66  Identities=26%  Similarity=0.509  Sum_probs=46.9

Q ss_pred             cCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------------CCCCcc-----cCcEEEEcCCCCCCCeEE
Q psy17058         97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------------LPPNMI-----AGETLIINGITKADEGVY  155 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------------~~~~~~-----~~~~L~i~~v~~~D~G~Y  155 (471)
                      +|..+.+.+|++|+|.|. .......+.||+.....               ..++..     ....|.|.+++.+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            466788999999999998 44444568999862111               111111     345899999999999999


Q ss_pred             EEEEEec
Q psy17058        156 ICSIQNA  162 (471)
Q Consensus       156 ~C~~~~~  162 (471)
                      .|.+...
T Consensus        85 yCA~~~~   91 (108)
T d1nfde1          85 YCLSSYG   91 (108)
T ss_dssp             EEEEEET
T ss_pred             EEEeecC
Confidence            9987643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.24  E-value=2e-06  Score=63.54  Aligned_cols=71  Identities=14%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCC------------------CCCcc------cCcEEEEcCC
Q psy17058         92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQL------------------PPNMI------AGETLIINGI  147 (471)
Q Consensus        92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~------------------~~~~~------~~~~L~i~~v  147 (471)
                      +.|+..|..+.+.+|++++|.|........+.||+.....-                  ..+..      ....|+|.++
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCTTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCCCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            35666788899999999999999222345799999721111                  11110      2347999999


Q ss_pred             CCCCCeEEEEEEEec
Q psy17058        148 TKADEGVYICSIQNA  162 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~  162 (471)
                      +.+|+|.|.|.+...
T Consensus        82 ~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          82 ELEDSAMYFCASSLR   96 (113)
T ss_dssp             CGGGCEEECEEEESS
T ss_pred             CcCCceeEEEEeecC
Confidence            999999999987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-06  Score=60.53  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+.+.|.  ..+..|++|+|.|.........|.|+|+|........  .......+.|.+++.+|+|.|+|.....
T Consensus         5 kP~Lsa~P~--~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~--~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           5 KPFLSADRG--LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQ--SGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCEEEESSC--SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEE--ECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCEEEEeCC--CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEc--CCCcccEEEEeccccccCcEEEEEEEcC
Confidence            566666664  3788999999999853233457999999865433222  2345578999999999999999988754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=2.1e-07  Score=66.55  Aligned_cols=65  Identities=23%  Similarity=0.514  Sum_probs=45.3

Q ss_pred             ceeecCCCcEEEEeeCCCCCCeEEEEeCCC-CCC--------------CCCcc-------cCcEEEEcCCCCCCCeEEEE
Q psy17058        100 QQSAPEGSQVTIECKSNDPSATIKWSKDNQ-EQL--------------PPNMI-------AGETLIINGITKADEGVYIC  157 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~-~~~--------------~~~~~-------~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      +++|.+|++|+|.|........+.|||... ..+              ..+..       ....|.|.+++.+|+|.|.|
T Consensus         2 slsV~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             CceECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            467899999999999323345799998511 100              01100       23479999999999999999


Q ss_pred             EEEecCC
Q psy17058        158 SIQNAQG  164 (471)
Q Consensus       158 ~~~~~~~  164 (471)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8876544

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.23  E-value=2.4e-06  Score=60.73  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC-------cccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-------MIAGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      .|.|...|. ..|..|++|+|.|........+.++|++.......       ......+.|.+++..|+|.|+|.....
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            578888884 56999999999999666778899999843321110       013457999999999999999987644

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=2.5e-06  Score=63.88  Aligned_cols=82  Identities=20%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             ccEEecCCCcEEEEEEEeec----CCCeEEEEeCCccC--C----------------Ccc--c----ccccCceeEEEEe
Q psy17058        282 EYVSVRPGEPLTLECEATGR----PMPTVSWVKYIAPF--D----------------RNL--E----RDELTSRAVYTIA  333 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~----p~~~i~W~~~~~~~--~----------------~~~--~----~~~~~~~~~l~i~  333 (471)
                      ..+.+..|++++|.|.....    ....+.|++....-  .                ...  +    ........+|.|.
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH   86 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence            45688899999999997532    22379998742210  0                000  0    0112234689999


Q ss_pred             ecCCCCCeEEEEEEEcCCC--ceEEEEEEEEe
Q psy17058        334 SVRESDAGQYKCIGKNSAG--TEEKVITVAVE  363 (471)
Q Consensus       334 ~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~  363 (471)
                      +++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        87 ~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             SCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999998654  33455677664

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.21  E-value=2.9e-06  Score=62.71  Aligned_cols=70  Identities=17%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             cEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGIT  148 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v~  148 (471)
                      .|+..|..+.+.+|++|+|.|........+.|||.....                  ......      ....|+|.+++
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEEccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            456678888999999999999822234578999862110                  000000      33579999999


Q ss_pred             CCCCeEEEEEEEec
Q psy17058        149 KADEGVYICSIQNA  162 (471)
Q Consensus       149 ~~D~G~Y~C~~~~~  162 (471)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999988643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-06  Score=65.55  Aligned_cols=65  Identities=20%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             CCceeecCCCcEEEEee-CC--C-----CCCeEEEEeCCCCCC--------------C----CCcc-------cCcEEEE
Q psy17058         98 PRQQSAPEGSQVTIECK-SN--D-----PSATIKWSKDNQEQL--------------P----PNMI-------AGETLII  144 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~--~-----p~~~v~W~~~~~~~~--------------~----~~~~-------~~~~L~i  144 (471)
                      |.++++.+|++|+|.|. ..  .     ....+.|++......              .    .+..       .+.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            56889999999999997 21  1     123578988621110              0    0011       3458999


Q ss_pred             cCCCCCCCeEEEEEEEec
Q psy17058        145 NGITKADEGVYICSIQNA  162 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~~  162 (471)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=2.6e-06  Score=62.02  Aligned_cols=68  Identities=15%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++..  ....              .............|+|.+++.+|+|.|.|.
T Consensus         9 ~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa   88 (106)
T d1a0ql1           9 SLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCL   88 (106)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEE
Confidence            467889999999999865555569999842  1110              111112234567899999999999999998


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +.+.
T Consensus        89 ~~~~   92 (106)
T d1a0ql1          89 QYYN   92 (106)
T ss_dssp             ECSS
T ss_pred             EeCC
Confidence            7654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.3e-06  Score=65.19  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             ccEEecCCCcEEEEEEEeec---CCCeEEEEeCCccCC-------------C---c--ccccccCceeEEEEeecCCCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGR---PMPTVSWVKYIAPFD-------------R---N--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~---p~~~i~W~~~~~~~~-------------~---~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      ..+.+.+|++|+|.|.....   ....+.|++....-.             .   .  ..........+|.|.+++.+|+
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds   86 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS   86 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC
Confidence            45788899999999986432   223578987432110             0   0  1112234456899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEecC
Q psy17058        341 GQYKCIGKNSAGTEEKVITVAVEHR  365 (471)
Q Consensus       341 G~Y~C~a~n~~g~~~~~~~l~V~~~  365 (471)
                      |.|.|.+..........+.|.|.+.
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          87 GRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEEEEcCCCCceEeEEEEEECC
Confidence            9999998765544556688888765

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.15  E-value=1.8e-06  Score=63.80  Aligned_cols=70  Identities=16%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             EEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC------------------CCc------ccCcEEEEcCCCC
Q psy17058         94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP------------------PNM------IAGETLIINGITK  149 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~------------------~~~------~~~~~L~i~~v~~  149 (471)
                      |...|..+.+.+|++++|.|........+.||+.....-.                  ...      .....|.|.+++.
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEETTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             CEECCCEEEECCCCCEEEEEEEeCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            3456778899999999999992223457999996221100                  000      0235799999999


Q ss_pred             CCCeEEEEEEEecC
Q psy17058        150 ADEGVYICSIQNAQ  163 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~  163 (471)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999886543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.8e-06  Score=58.82  Aligned_cols=81  Identities=14%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeec-CCC-eEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEE
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGR-PMP-TVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+|.+.+.+..  .+..|+.++|.|.+.|+ |.. .++|.++|..+.....    ......-.......+..++.+.|+|
T Consensus         4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           4 RTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            45555554221  34578899999999994 544 8999999988753211    0111111122223344566779999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .+.+.....
T Consensus        82 ~V~H~sl~~   90 (100)
T d1k5nb_          82 RVNHVTLSQ   90 (100)
T ss_dssp             EEECTTCSS
T ss_pred             EEEeCCCCC
Confidence            999975443

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.6e-06  Score=64.27  Aligned_cols=64  Identities=19%  Similarity=0.412  Sum_probs=43.7

Q ss_pred             ceeecCCCcEEEEee-C--CCCCCeEEEEeCCCCCCC------------------CCcc-------cCcEEEEcCCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-S--NDPSATIKWSKDNQEQLP------------------PNMI-------AGETLIINGITKAD  151 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~--~~p~~~v~W~~~~~~~~~------------------~~~~-------~~~~L~i~~v~~~D  151 (471)
                      ...+.+|++|+|.|. .  ......+.|+|.......                  .+..       ...+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            467889999999997 3  224457889986221110                  0100       12469999999999


Q ss_pred             CeEEEEEEEecC
Q psy17058        152 EGVYICSIQNAQ  163 (471)
Q Consensus       152 ~G~Y~C~~~~~~  163 (471)
                      +|.|.|.+....
T Consensus        88 sg~Y~Cav~~~~   99 (113)
T d1smoa_          88 SGLYQCVIYQPP   99 (113)
T ss_dssp             CEEEEEEECCTT
T ss_pred             CceEEEEEECCC
Confidence            999999886543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.13  E-value=5.7e-06  Score=61.22  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=50.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------Cc--ccccccCceeEEEEeecCCCCCeEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RN--LERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.+.+|++++|.|.........+.|++....  ..              ..  ..........+|.|.+++.+|+|.|.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            46788999999999987666668999974221  10              00  11112345678999999999999999


Q ss_pred             EEEEcCCC
Q psy17058        345 CIGKNSAG  352 (471)
Q Consensus       345 C~a~n~~g  352 (471)
                      |.+....+
T Consensus        89 Ca~~~~~~   96 (114)
T d2cdea1          89 CVVSDRGS   96 (114)
T ss_dssp             EEEECSCT
T ss_pred             eeeecCCC
Confidence            99987533

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=4.9e-06  Score=62.30  Aligned_cols=74  Identities=22%  Similarity=0.416  Sum_probs=51.4

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC-------------C-----cc--c-----ccccCc
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD-------------R-----NL--E-----RDELTS  326 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~-------------~-----~~--~-----~~~~~~  326 (471)
                      |.+...|. .+.+.+|++++|.|.+.+.....+.|++.  +..+.             .     ..  .     ......
T Consensus         2 ~~~~~~P~-~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           2 PELRIFPK-KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CEEEEESS-CEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CceEEcCC-EEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            55666654 46789999999999998776778999873  22210             0     00  0     001123


Q ss_pred             eeEEEEeecCCCCCeEEEEEEE
Q psy17058        327 RAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       327 ~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      ..+|+|.+++.+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            4689999999999999999875

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.12  E-value=1.5e-05  Score=56.93  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccccc----c----cCceeEEEEeecCCCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLERD----E----LTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~----~----~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|.+.+.+..  .+..|+.++|.|.+.|+ |. ..+.|+++|..+.......    .    ....+.|.+   ..++.+.
T Consensus         3 pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v---~~~~~~~   77 (100)
T d1muja1           3 APQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF---IPSDDDI   77 (100)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEE---CCCTTCC
T ss_pred             CCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEE---cCCCCCE
Confidence            4555554432  35668899999999995 43 4899999998876432111    1    112233333   4456678


Q ss_pred             EEEEEEcCCCce
Q psy17058        343 YKCIGKNSAGTE  354 (471)
Q Consensus       343 Y~C~a~n~~g~~  354 (471)
                      |+|+|.+..-..
T Consensus        78 ytC~V~H~sl~~   89 (100)
T d1muja1          78 YDCKVEHWGLEE   89 (100)
T ss_dssp             EEEEEECTTSSS
T ss_pred             EEEEEEECCCCC
Confidence            999999975443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=2.9e-06  Score=62.60  Aligned_cols=66  Identities=24%  Similarity=0.439  Sum_probs=46.4

Q ss_pred             EcCCceeecCCCcEEEEee-CC-CCCCeEEEEeCC-CCCCC-------CC-------c-----ccCcEEEEcCCCCCCCe
Q psy17058         96 VTPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDN-QEQLP-------PN-------M-----IAGETLIINGITKADEG  153 (471)
Q Consensus        96 ~~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~-~~~~~-------~~-------~-----~~~~~L~i~~v~~~D~G  153 (471)
                      .+|..+.+.+|++|+|.|. .+ .....+.|||.. +..+.       ..       .     .....|+|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            3577888999999999998 43 333459999962 11111       00       0     03347999999999999


Q ss_pred             EEEEEEEe
Q psy17058        154 VYICSIQN  161 (471)
Q Consensus       154 ~Y~C~~~~  161 (471)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99997654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=7.8e-06  Score=60.50  Aligned_cols=71  Identities=18%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ..+.+.+|++++|.|.........+.|+|..  +.+.              ..  ...........|.|.+++.+|+|.|
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY   88 (115)
T ss_dssp             SEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence            3567889999999999886666679999742  2111              00  1111223456799999999999999


Q ss_pred             EEEEEcCCC
Q psy17058        344 KCIGKNSAG  352 (471)
Q Consensus       344 ~C~a~n~~g  352 (471)
                      .|.+....+
T Consensus        89 yCa~~~~~~   97 (115)
T d1lp9e1          89 YCALFLASS   97 (115)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEcCCC
Confidence            998876543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.10  E-value=6.8e-06  Score=59.80  Aligned_cols=69  Identities=19%  Similarity=0.309  Sum_probs=48.8

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      ..+.+.+|++++|.|...+.....+.|++....  ..              .............|.|.+++.+|+|.|.|
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEE
Confidence            356788999999999987654457999984211  11              11111223456789999999999999999


Q ss_pred             EEEcC
Q psy17058        346 IGKNS  350 (471)
Q Consensus       346 ~a~n~  350 (471)
                      .+...
T Consensus        89 a~~~~   93 (107)
T d1ospl1          89 QQYWS   93 (107)
T ss_dssp             EECSS
T ss_pred             eeccC
Confidence            87643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=7.3e-06  Score=58.71  Aligned_cols=81  Identities=16%  Similarity=0.288  Sum_probs=48.4

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc-ccCce---eEEEEeecCCCCCeEEEE
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD-ELTSR---AVYTIASVRESDAGQYKC  345 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~-~~~~~---~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+|.+.+.+..  ....|+.++|.|.+.| +|.. .++|.++|..+....... ....+   .......+..++.+.|+|
T Consensus         3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            35555554322  2356888999999999 4543 899999998876432100 11111   122222334556678999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .+.+..-..
T Consensus        81 ~V~H~sl~~   89 (99)
T d1lk2b_          81 RVKHDSMAE   89 (99)
T ss_dssp             EEECTTSSS
T ss_pred             EEEeCCCCC
Confidence            999975433

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3e-06  Score=59.78  Aligned_cols=71  Identities=20%  Similarity=0.360  Sum_probs=53.1

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+.+.|.  ..+..|++|+|.|... .+...+.|+|+|.......  ........+.|.+++.+|+|.|+|...
T Consensus         4 kPsLsa~P~--~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~--~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           4 TPTLSVHPG--PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR--GYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCEEEEESC--SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEE--EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCEEEEeCC--CcccCCCcEEEEECCC-CCCCEEEEEECCCccceee--cCCCceeEEEecccChhcCceEEEEeE
Confidence            566666664  3688899999999865 4456899999887643222  223456789999999999999999754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.08  E-value=6.6e-06  Score=58.40  Aligned_cols=57  Identities=19%  Similarity=0.505  Sum_probs=41.1

Q ss_pred             CCcEEEEee-CCCCCCeEEEEeCCCCCCC-------C-------Ccc-------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058        106 GSQVTIECK-SNDPSATIKWSKDNQEQLP-------P-------NMI-------AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus       106 G~~v~l~C~-~~~p~~~v~W~~~~~~~~~-------~-------~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      |++|+|.|. .......+.||+......+       .       +..       ...+|+|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            789999999 6666678999986222111       0       000       2347999999999999999987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.07  E-value=5.1e-06  Score=61.89  Aligned_cols=69  Identities=20%  Similarity=0.370  Sum_probs=48.8

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CC--------------CCCCCcc-------cCcEEEEcCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QE--------------QLPPNMI-------AGETLIINGI  147 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~--------------~~~~~~~-------~~~~L~i~~v  147 (471)
                      .+..++..+.+.+|++++|.|. .+.  ....+.||+.. +.              ...++..       ....|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            4556677888999999999998 433  23569999851 11              1111111       2358999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|+|.|.|....
T Consensus        83 ~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          83 SERDEGSYYCACDT   96 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCCceeecCccc
Confidence            99999999998654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=3.8e-06  Score=62.66  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=44.6

Q ss_pred             CCceeecCCCcEEEEee-CC---C---CCCeEEEEeCCCCCC------------C----CCc-------ccCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SN---D---PSATIKWSKDNQEQL------------P----PNM-------IAGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~---~---p~~~v~W~~~~~~~~------------~----~~~-------~~~~~L~i~~v  147 (471)
                      |..+.+.+|++|.|.|. ..   .   ....+.|++......            .    .+.       ....+|+|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            67889999999999998 21   1   123466777522110            0    000       03457999999


Q ss_pred             CCCCCeEEEEEEEecC
Q psy17058        148 TKADEGVYICSIQNAQ  163 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~~~  163 (471)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=6.8e-06  Score=59.63  Aligned_cols=68  Identities=22%  Similarity=0.373  Sum_probs=48.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++.  |+...              .............|.|.+++.+|+|.|.|.
T Consensus        10 s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   89 (107)
T d1c5cl1          10 SLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEe
Confidence            46788999999999987655557999974  22211              011111233457899999999999999997


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +.+.
T Consensus        90 ~~~~   93 (107)
T d1c5cl1          90 QYAS   93 (107)
T ss_dssp             ECSS
T ss_pred             cCcC
Confidence            7653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.06  E-value=1.8e-05  Score=56.47  Aligned_cols=76  Identities=18%  Similarity=0.342  Sum_probs=54.1

Q ss_pred             eCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .+|.+.+.|.  ..+..|++|+|.|... .+...+.|+|+|........ .........+.|..+...|+|.|+|.....
T Consensus         5 pkPsLsa~P~--~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPG--PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESC--SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCC--CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            3566666664  3788999999999865 45568999999876543221 112344567788889899999999987644

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.3e-05  Score=59.66  Aligned_cols=64  Identities=19%  Similarity=0.382  Sum_probs=44.8

Q ss_pred             CCceeecCCCcEEEEee-CCCCC---CeEEEEeCCCCCCC----------------CCc------c-cCcEEEEcCCCCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDPS---ATIKWSKDNQEQLP----------------PNM------I-AGETLIINGITKA  150 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~~~~~~----------------~~~------~-~~~~L~i~~v~~~  150 (471)
                      |..+.+.+|++|+|.|. .....   ..+.|||......+                .+.      . ....|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            66778999999999999 32222   25889997321111                000      0 3458999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.02  E-value=1e-05  Score=58.93  Aligned_cols=67  Identities=24%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++|+|.|.........+.|++..  +...              .............|+|.+++.+|+|.|.|.
T Consensus        10 ~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa   89 (107)
T d1kcvl1          10 SMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCG   89 (107)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEE
Confidence            467889999999999876555579999742  2111              111122234567899999999999999998


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        90 ~~~   92 (107)
T d1kcvl1          90 QSY   92 (107)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=1.1e-05  Score=58.73  Aligned_cols=68  Identities=19%  Similarity=0.359  Sum_probs=47.4

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      ..+.+.+|++++|.|.........+.|++..  +...              .............|.|.+++.+|++.|.|
T Consensus         9 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1           9 KFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEE
Confidence            3467899999999999765544579999742  2111              11111122355789999999999999999


Q ss_pred             EEEc
Q psy17058        346 IGKN  349 (471)
Q Consensus       346 ~a~n  349 (471)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1mexl1          89 QQYN   92 (107)
T ss_dssp             EECS
T ss_pred             eECC
Confidence            7654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.00  E-value=3.2e-05  Score=55.00  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcccc-----cccCceeEEEEeecCCCCCeEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      +|.+.+.+..  ....++..+|.|.+.| +|.. .++|+++|..+......     .....-..+....+..++...|+|
T Consensus         4 ~P~V~l~~~~--~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAK--TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCC--ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            4555554332  2344667789999999 4543 89999999887543211     111122333344556777889999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .|.+..-..
T Consensus        82 ~V~H~sl~~   90 (98)
T d1d5mb1          82 QVEHPSVTS   90 (98)
T ss_dssp             EEECTTCSS
T ss_pred             EEEECCCCC
Confidence            999976544

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=8.7e-06  Score=59.30  Aligned_cols=67  Identities=24%  Similarity=0.393  Sum_probs=47.7

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++...  .+.              .............|.|.+++.+|+|.|.|.
T Consensus        10 ~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEE
Confidence            4678899999999997654455799997432  111              111122234567899999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1j1pl_          90 QAN   92 (107)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=8.2e-06  Score=59.32  Aligned_cols=66  Identities=23%  Similarity=0.394  Sum_probs=46.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|...+.....+.|++...  ...              .............|.|.+++.+|+|.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            5688999999999998765555799997421  111              111112234457899999999999999996


Q ss_pred             EE
Q psy17058        347 GK  348 (471)
Q Consensus       347 a~  348 (471)
                      +.
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.00  E-value=1.2e-05  Score=58.52  Aligned_cols=67  Identities=19%  Similarity=0.389  Sum_probs=47.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++|+|+|.........+.|++...  ...              .............|+|.+++.+|+|.|.|.
T Consensus        10 sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          10 SLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEE
Confidence            4678899999999998755456899997422  111              111112234567899999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1tjgl1          90 QLH   92 (107)
T ss_dssp             ECS
T ss_pred             ECc
Confidence            654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.99  E-value=3.2e-05  Score=56.72  Aligned_cols=83  Identities=18%  Similarity=0.312  Sum_probs=53.9

Q ss_pred             cEEecCCCcEEEEEEEeecC--CCeEEEEeCCccCC----------------CcccccccCceeEEEEeecCCCCCeEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRP--MPTVSWVKYIAPFD----------------RNLERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~~~~----------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.+.+|++++|.|.+.+..  ...+.|++....-.                .............|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            57888999999999987543  34699997422211                1111112345678999999999999999


Q ss_pred             EEEEcCCCceE---EEEEEEEecC
Q psy17058        345 CIGKNSAGTEE---KVITVAVEHR  365 (471)
Q Consensus       345 C~a~n~~g~~~---~~~~l~V~~~  365 (471)
                      |.+.......-   .-..|.|...
T Consensus        89 CA~~~~~~~~~~FG~GT~LtVlg~  112 (114)
T d2rhea_          89 CAAWNDSLDEPGFGGGTKLTVLGQ  112 (114)
T ss_dssp             EEEEETTTTEEEECCCEEEEECSC
T ss_pred             EeecCCCCCCCEECCCeEEEECCC
Confidence            98764322111   2246666543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.99  E-value=8.3e-06  Score=59.21  Aligned_cols=67  Identities=22%  Similarity=0.409  Sum_probs=47.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++.  ++...              ............+|.|.+++.+|+|.|.|.
T Consensus        10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEe
Confidence            46788999999999876555557999974  22211              111111233567899999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +.+
T Consensus        90 ~~~   92 (106)
T d1i8ka_          90 QSF   92 (106)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=8.9e-06  Score=59.19  Aligned_cols=66  Identities=20%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             ceeecCCCcEEEEee-CCCC-C---CeEEEEeCCCCCCC-------------CCcc----cCcEEEEcCCCCCCCeEEEE
Q psy17058        100 QQSAPEGSQVTIECK-SNDP-S---ATIKWSKDNQEQLP-------------PNMI----AGETLIINGITKADEGVYIC  157 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p-~---~~v~W~~~~~~~~~-------------~~~~----~~~~L~i~~v~~~D~G~Y~C  157 (471)
                      .+++..|++|+|.|. .... .   ..+.|.+++...+.             .+..    ++.+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            357889999999998 3221 1   35778776322110             0000    35689999999999999999


Q ss_pred             EEEecCCc
Q psy17058        158 SIQNAQGN  165 (471)
Q Consensus       158 ~~~~~~~~  165 (471)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            99865444

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=1.5e-05  Score=58.00  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=47.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++|+|.|.........+.|++....  ..              .............|.|.+++.+|+|.|.|.
T Consensus        10 sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1d5il1          10 SMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEee
Confidence            46788999999999987655557899974221  11              111112234557899999999999999997


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +.+.
T Consensus        90 ~~~~   93 (107)
T d1d5il1          90 QYDE   93 (107)
T ss_dssp             ECSS
T ss_pred             eccC
Confidence            7653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.96  E-value=6.6e-06  Score=59.52  Aligned_cols=67  Identities=22%  Similarity=0.396  Sum_probs=47.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++...  ...              .............|.|.+++.+|+|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            5678999999999987654445689997422  111              111112234557899999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +.+
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.6e-06  Score=60.76  Aligned_cols=70  Identities=23%  Similarity=0.272  Sum_probs=47.5

Q ss_pred             EEecCCCcEEEEEEEeecCC----CeEEEEeCCccCCC-------------cccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPM----PTVSWVKYIAPFDR-------------NLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~----~~i~W~~~~~~~~~-------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      +.+..|++++|.|.......    ..+.|.+++..+..             .........+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            56788999999998753221    26788887654310             00001123456899999999999999999


Q ss_pred             EEcCCCc
Q psy17058        347 GKNSAGT  353 (471)
Q Consensus       347 a~n~~g~  353 (471)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9865443

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.2e-05  Score=57.30  Aligned_cols=70  Identities=20%  Similarity=0.322  Sum_probs=46.5

Q ss_pred             cEEecCCCcEEEEEEEeecC--CCeEEEEeCCcc--C----------C----Cc--ccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRP--MPTVSWVKYIAP--F----------D----RN--LERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~~--~----------~----~~--~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|......  ...+.|+|....  .          .    ..  ..........+|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            35788999999999865322  235789873211  0          0    00  011123456789999999999999


Q ss_pred             EEEEEEcCCC
Q psy17058        343 YKCIGKNSAG  352 (471)
Q Consensus       343 Y~C~a~n~~g  352 (471)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9999885543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.5e-05  Score=57.27  Aligned_cols=63  Identities=17%  Similarity=0.317  Sum_probs=40.3

Q ss_pred             ceeecCCCcEEEEee-CCCC---CCeEEE--EeCCCCCC-------------CCCcc-------cCcEEEEcCCCCCCCe
Q psy17058        100 QQSAPEGSQVTIECK-SNDP---SATIKW--SKDNQEQL-------------PPNMI-------AGETLIINGITKADEG  153 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p---~~~v~W--~~~~~~~~-------------~~~~~-------~~~~L~i~~v~~~D~G  153 (471)
                      .+.+..|++|+|.|. ....   ...+.|  .++....+             .....       ...+|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            356888999999998 3222   223444  34322110             00000       4568999999999999


Q ss_pred             EEEEEEEec
Q psy17058        154 VYICSIQNA  162 (471)
Q Consensus       154 ~Y~C~~~~~  162 (471)
                      .|.|.+...
T Consensus        83 ~Y~C~V~~~   91 (110)
T d1ncna_          83 LYQCIIHHK   91 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            999998654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.94  E-value=1.9e-05  Score=57.39  Aligned_cols=68  Identities=22%  Similarity=0.413  Sum_probs=47.5

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCC----------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD----------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~----------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|...+.....+.|++....-.                .............|+|.+++.+|+|.|.|.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          10 YLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             eEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEe
Confidence            4678899999999998765555799997422110                111112233556899999999999999997


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +.+.
T Consensus        90 ~~~~   93 (108)
T d1jhll_          90 QHNE   93 (108)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            6653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=3e-05  Score=57.09  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             cEEecCCCcEEEEEEEeec-CCCeEEEEeC--CccCC---------------Ccccc--cccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGR-PMPTVSWVKY--IAPFD---------------RNLER--DELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~--~~~~~---------------~~~~~--~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|...+. ....+.|++.  ++...               .....  ........|.|.+++.+|+|.
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGI   87 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeE
Confidence            5678999999999998653 3346899973  22110               00010  112234679999999999999


Q ss_pred             EEEEEEcCC
Q psy17058        343 YKCIGKNSA  351 (471)
Q Consensus       343 Y~C~a~n~~  351 (471)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (114)
T d3bp5a1          88 YLCGAISLH   96 (114)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeCC
Confidence            999887543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=1.6e-05  Score=58.64  Aligned_cols=71  Identities=24%  Similarity=0.431  Sum_probs=50.1

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ..+.+.+|++++|.|...+.....+.|+|..  +...              ..  ...........|.|.+++.+|+|.|
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Y   87 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATY   87 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEE
Confidence            3567889999999999876555579999832  2211              00  1111234567899999999999999


Q ss_pred             EEEEEcCCC
Q psy17058        344 KCIGKNSAG  352 (471)
Q Consensus       344 ~C~a~n~~g  352 (471)
                      .|.+....+
T Consensus        88 yCa~~~~~~   96 (113)
T d2bnqd1          88 LCAVRPTSG   96 (113)
T ss_dssp             EEEEEESSS
T ss_pred             eEeEecCCC
Confidence            999986544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=3.9e-05  Score=50.52  Aligned_cols=76  Identities=25%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             ceeecCCCcEEEEee--CCCCCCeEEEEeCCCCC---CCCCcc-----------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058        100 QQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQ---LPPNMI-----------AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~---~~~~~~-----------~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      .-++..|+.+.|.|.  .-.-.|.|+|-|-++..   +.....           .--.|.+..+-.+|.|.|+|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            456899999999999  45566889999985543   221111           22378899999999999999998665


Q ss_pred             CceeeeeEEEEE
Q psy17058        164 GNVFQDYASIQV  175 (471)
Q Consensus       164 ~~~~~~~~~l~v  175 (471)
                      +-..+-+..+.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            554444455544

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=4.8e-06  Score=60.66  Aligned_cols=66  Identities=17%  Similarity=0.349  Sum_probs=45.3

Q ss_pred             CceeecCCCcEEEEee-CC--CCCCeEEEEeCC-CCCC-----C------------CCcc-------cCcEEEEcCCCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SN--DPSATIKWSKDN-QEQL-----P------------PNMI-------AGETLIINGITKA  150 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~-~~~~-----~------------~~~~-------~~~~L~i~~v~~~  150 (471)
                      +...+.+|++++|.|. .+  .....+.|+|.. +...     .            ++..       ..-+|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            4567999999999999 32  245578999862 1110     0            0000       2236999999999


Q ss_pred             CCeEEEEEEEecCC
Q psy17058        151 DEGVYICSIQNAQG  164 (471)
Q Consensus       151 D~G~Y~C~~~~~~~  164 (471)
                      |+|.|.|.......
T Consensus        83 Dsa~YyCa~~~~~~   96 (110)
T d1u9ka_          83 DSGLYRCVIYHPPN   96 (110)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             CCEEEEEEEeCCCC
Confidence            99999998865443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=9.4e-06  Score=58.53  Aligned_cols=70  Identities=20%  Similarity=0.309  Sum_probs=47.7

Q ss_pred             CCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy17058        288 PGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV  357 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  357 (471)
                      .++.++|.|.+.| +|. ..|.|.++|..+.....        .......+.|.|..........|+|.|.+......++
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~kt   98 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT   98 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEeeE
Confidence            3567899999998 454 38999999887653211        1112344567777777677789999999976544433

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.93  E-value=1.7e-05  Score=58.05  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             cEEecCCCcEEEEEEEeec-CCCeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGR-PMPTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+.+.+|++++|.|...+. ....+.|++.  ++...              .............|.|.+++.+|+|.|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence            5788899999999997543 3346899984  22211              00111223456789999999999999999


Q ss_pred             EEEcC
Q psy17058        346 IGKNS  350 (471)
Q Consensus       346 ~a~n~  350 (471)
                      .+...
T Consensus        87 a~~~~   91 (110)
T d2esvd1          87 IVVRS   91 (110)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            88644

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.93  E-value=1.7e-05  Score=58.89  Aligned_cols=68  Identities=26%  Similarity=0.437  Sum_probs=46.3

Q ss_pred             EEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC-------------------CCcc-------cCcEEEE
Q psy17058         94 VQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP-------------------PNMI-------AGETLII  144 (471)
Q Consensus        94 v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~-------------------~~~~-------~~~~L~i  144 (471)
                      ++..|..+++.+|++|+|.|. .+.  ....+.||+.....-+                   .+..       ....|+|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            445556778889999999998 332  2356899996211100                   0000       2246999


Q ss_pred             cCCCCCCCeEEEEEEEe
Q psy17058        145 NGITKADEGVYICSIQN  161 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~  161 (471)
                      .+++.+|+|.|.|....
T Consensus        84 ~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CSCCGGGCSEEEEEECC
T ss_pred             cccccccceeEEEEEcC
Confidence            99999999999997754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.93  E-value=2.5e-05  Score=57.72  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=48.6

Q ss_pred             ccEEecCCCcEEEEEEEeec-CCCeEEEEeC--CccCC-----------------Ccc--cccccCceeEEEEeecCCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGR-PMPTVSWVKY--IAPFD-----------------RNL--ERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~--~~~~~-----------------~~~--~~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+.+.+|++++|.|...+. ....+.|++.  +....                 ...  .........+|+|.+++.+|
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   87 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTED   87 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccc
Confidence            35678899999999998653 4457999872  22211                 000  00112334689999999999


Q ss_pred             CeEEEEEEEcCCCc
Q psy17058        340 AGQYKCIGKNSAGT  353 (471)
Q Consensus       340 ~G~Y~C~a~n~~g~  353 (471)
                      +|.|.|.+....+.
T Consensus        88 sg~YyCa~~~~~~~  101 (116)
T d1tvda_          88 SATYYCAFTLPPPT  101 (116)
T ss_dssp             CEEEEEEEECTTTT
T ss_pred             cccceeeEecCCCC
Confidence            99999988765443

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.91  E-value=4.1e-05  Score=57.05  Aligned_cols=67  Identities=16%  Similarity=0.370  Sum_probs=45.3

Q ss_pred             EEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C------------------C-CCCcc-------cCcEEEE
Q psy17058         95 QVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q------------------L-PPNMI-------AGETLII  144 (471)
Q Consensus        95 ~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~------------------~-~~~~~-------~~~~L~i  144 (471)
                      +..+.++++.+|++++|.|. .+.  ....+.||+.... .                  . ..+..       ....|.|
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i   84 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecc
Confidence            33345677889999999998 432  3456899986211 0                  0 01111       2246999


Q ss_pred             cCCCCCCCeEEEEEEEe
Q psy17058        145 NGITKADEGVYICSIQN  161 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~  161 (471)
                      .+++.+|+|.|.|....
T Consensus        85 ~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          85 HNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccccccCcEEEEeeeC
Confidence            99999999999998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.91  E-value=4.9e-05  Score=53.86  Aligned_cols=77  Identities=19%  Similarity=0.358  Sum_probs=47.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCcccc--cc------cCceeEEEEeecCCCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLER--DE------LTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~------~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|.+.+.+..  ....++.++|.|.+.|+ |. ..++|.++|+.+......  ..      ....+.|.+   ..++...
T Consensus         3 PP~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~   77 (98)
T d1hdmb1           3 PPSVQVAKTT--PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDT   77 (98)
T ss_dssp             CCEEEEEECC--CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCC
T ss_pred             CCEEEEEcCC--CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCE
Confidence            4555443321  24567889999999994 53 489999999877532110  11      111223333   4555568


Q ss_pred             EEEEEEcCCCce
Q psy17058        343 YKCIGKNSAGTE  354 (471)
Q Consensus       343 Y~C~a~n~~g~~  354 (471)
                      |+|.+.+.....
T Consensus        78 ytC~V~H~sl~~   89 (98)
T d1hdmb1          78 YTCVVEHIGAPE   89 (98)
T ss_dssp             EEEEEECTTSSS
T ss_pred             EEEEEEeCCCCC
Confidence            999999976544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.91  E-value=2.3e-05  Score=57.94  Aligned_cols=69  Identities=25%  Similarity=0.319  Sum_probs=48.3

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC---------------Ccc--cccccCceeEEEEeecCCCCCeE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD---------------RNL--ERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~---------------~~~--~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ..+.+.+|++++|.|.........+.|++..  +...               ...  ..........|.|.+++.+|+|.
T Consensus         8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1j8hd1           8 SHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAE   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCcc
Confidence            3568899999999999876555679999732  2111               000  01112234579999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1j8hd1          88 YFCAVSES   95 (115)
T ss_dssp             EEEEEESS
T ss_pred             ceeeecCC
Confidence            99999765

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.2e-05  Score=57.15  Aligned_cols=75  Identities=19%  Similarity=0.347  Sum_probs=52.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      +|.+...|.  ..+..|++|+|.|... .+...+.++|++....... ..........+.|.+++.+|+|.|+|.....
T Consensus         4 kP~Lsa~Ps--~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1           4 KPTLWAEPG--SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             CCEEEEESC--SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeECC--CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            455655554  3678999999999964 4555788999886432111 1112235579999999999999999987643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.90  E-value=2.1e-05  Score=58.16  Aligned_cols=70  Identities=24%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             CccEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC-------C----------cccccccCceeEEEEeecCCCCCe
Q psy17058        281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD-------R----------NLERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       281 ~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~-------~----------~~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      +..+.+.+|++++|.|.........+.|++.  ++...       .          ............|.|.+++.+|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            3456889999999999987655567889973  22211       0          001112234568999999999999


Q ss_pred             EEEEEEEcC
Q psy17058        342 QYKCIGKNS  350 (471)
Q Consensus       342 ~Y~C~a~n~  350 (471)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1i9ea_          87 VYFCAVSGF   95 (115)
T ss_dssp             EEEEEEEET
T ss_pred             eecccccCC
Confidence            999987643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.90  E-value=1.7e-05  Score=57.54  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|...+.....+.|++....  ..              .............|.|.+++.+|+|.|.|.
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeee
Confidence            56788999999999987554557999974211  11              111112234557899999999999999998


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.8e-05  Score=56.14  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCC--CCeEEEEEEEcCCCce
Q psy17058        286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRES--DAGQYKCIGKNSAGTE  354 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~--d~G~Y~C~a~n~~g~~  354 (471)
                      ....+.++|.|.+.| +|.. .|+|.++++.......       .......+.|.|......  ....|+|.|.+..+..
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            345678999999999 5543 8999999877643211       111223345666655543  2348999999998777


Q ss_pred             EEEEE
Q psy17058        355 EKVIT  359 (471)
Q Consensus       355 ~~~~~  359 (471)
                      +..+.
T Consensus        98 ~~~v~  102 (105)
T d1dn0b2          98 EKNVP  102 (105)
T ss_dssp             EEEEE
T ss_pred             EeEEe
Confidence            66554

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=1.6e-05  Score=57.89  Aligned_cols=67  Identities=19%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++..  +...              .............|.|.+++.+|+|.|.|.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA   89 (109)
T d1mqkl_          10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEe
Confidence            467889999999999875545569999832  1110              111112234567899999999999999998


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        90 ~~~   92 (109)
T d1mqkl_          90 HHY   92 (109)
T ss_dssp             ECS
T ss_pred             eeC
Confidence            763

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.88  E-value=1.2e-05  Score=58.40  Aligned_cols=67  Identities=15%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++|+|.|.........+.|++...  ...              .............|.|.+++.+|+|.|.|.
T Consensus        10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence            4568899999999998765555799997422  110              111122234567999999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        90 ~~~   92 (107)
T d3cx5k1          90 HHI   92 (107)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=2e-05  Score=58.12  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=48.0

Q ss_pred             ccEEecCCCcEEEEEEEeec-CCCeEEEEeC--CccCC---------C--------cccccccCceeEEEEeecCCCCCe
Q psy17058        282 EYVSVRPGEPLTLECEATGR-PMPTVSWVKY--IAPFD---------R--------NLERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~--~~~~~---------~--------~~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      ..+.+.+|++|+|.|..... ....+.|++.  +..+.         .        ............|.|.+++.+|+|
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   87 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSA   87 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCC
Confidence            35678999999999987643 3346889983  22211         0        001111234568999999999999


Q ss_pred             EEEEEEEcCCC
Q psy17058        342 QYKCIGKNSAG  352 (471)
Q Consensus       342 ~Y~C~a~n~~g  352 (471)
                      .|.|.+....+
T Consensus        88 ~YyCa~~~~~~   98 (114)
T d2ak4d1          88 VYFCALSGFYN   98 (114)
T ss_dssp             EEEEEEECSBT
T ss_pred             CceEeCCCCCC
Confidence            99998876543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=5.1e-06  Score=60.79  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=51.6

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc------------ccccCceeEEEEeecCCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE------------RDELTSRAVYTIASVRES  338 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~------------~~~~~~~~~l~i~~~~~~  338 (471)
                      +|.+.+.++....+..++.++|.|.+.| +|.. .|.|+++|..+.....            .......+.|.|....+.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            4455444332234556889999999998 4544 8999999987753211            111223456677766666


Q ss_pred             CCeEEEEEEEcCC
Q psy17058        339 DAGQYKCIGKNSA  351 (471)
Q Consensus       339 d~G~Y~C~a~n~~  351 (471)
                      ....|+|.|.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            6679999999865

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.87  E-value=5.5e-05  Score=53.97  Aligned_cols=77  Identities=23%  Similarity=0.337  Sum_probs=47.5

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcccc--------cccCceeEEEEeecCCCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLER--------DELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|.+.+.+..  ....|+..+|.|.+.| +|.. .++|++||..+......        ......+.|.+..   .+...
T Consensus         5 ~P~V~v~~~~--~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           5 APEVTVLSRS--PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             CCeEEEeCCC--cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            4555554322  2456788899999999 4544 89999999877532110        0112234444433   44458


Q ss_pred             EEEEEEcCCCce
Q psy17058        343 YKCIGKNSAGTE  354 (471)
Q Consensus       343 Y~C~a~n~~g~~  354 (471)
                      |+|.+.+..-..
T Consensus        80 ytC~V~H~sl~~   91 (101)
T d1fnga1          80 YDCEVDHWGLEE   91 (101)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEECCCCC
Confidence            999999975433

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.9e-05  Score=53.71  Aligned_cols=69  Identities=12%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             cCCCcEEEEEEEee-cCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058        287 RPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI  358 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  358 (471)
                      ..++.++|.|.+.| +|.+.+.|+++++.+......       ......+.|.+.   ..+...|+|.+.+..-.....+
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~~   90 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQTF   90 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEEE
Confidence            35778999999998 798899999999887532211       112223445554   3456799999999877665543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.86  E-value=3.9e-05  Score=55.69  Aligned_cols=68  Identities=24%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++..  +...              .............|.|.+++.+|+|.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            568899999999998754434469999742  2111              111112234567899999999999999998


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.86  E-value=4e-05  Score=54.14  Aligned_cols=75  Identities=21%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc---cccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL---ERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      +|.+...|.  ..+..|++|+|.|... .....+.++|+|.......   ..........+.|.+++.+|+|.|+|....
T Consensus         2 KPsLsa~P~--~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1           2 KPSLLAHPG--PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CCEEEEESC--SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCEEEeeCC--CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            455655553  3688899999999965 4456899999886532111   111223456899999999999999998764


Q ss_pred             C
Q psy17058        350 S  350 (471)
Q Consensus       350 ~  350 (471)
                      .
T Consensus        79 ~   79 (96)
T d1nkra1          79 T   79 (96)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.86  E-value=5.4e-05  Score=55.36  Aligned_cols=68  Identities=22%  Similarity=0.393  Sum_probs=47.3

Q ss_pred             cEEecCCCcEEEEEEEeecC--CCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRP--MPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.+.+|++++|.|...+..  ...+.|++...  ...              .............|.|.+++.+|+|.|.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            57889999999999976532  23599997421  111              1111122345578999999999999999


Q ss_pred             EEEEcC
Q psy17058        345 CIGKNS  350 (471)
Q Consensus       345 C~a~n~  350 (471)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            988754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.4e-05  Score=52.80  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .++.++|.|.+.| +|.. .++|++||+.+....      .......-.......+..++...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4677899999999 5654 899999998875321      001111112222333444566689999999744

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.4e-05  Score=59.40  Aligned_cols=64  Identities=19%  Similarity=0.430  Sum_probs=44.5

Q ss_pred             CCceeecCCCcEEEEee-C-CCCC--CeEEEEeCCCCCCC----------------CCcc-------cCcEEEEcCCCCC
Q psy17058         98 PRQQSAPEGSQVTIECK-S-NDPS--ATIKWSKDNQEQLP----------------PNMI-------AGETLIINGITKA  150 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~-~~p~--~~v~W~~~~~~~~~----------------~~~~-------~~~~L~i~~v~~~  150 (471)
                      |..+.+.+|++|+|.|. . +...  ..+.|||.......                .+..       ....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            66778999999999998 3 2222  24789996221100                0000       3358999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=8.1e-06  Score=59.18  Aligned_cols=68  Identities=12%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             cCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccc---------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        287 RPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLE---------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..++.++|.|.+.| +|. ..|.|+++|..+.....         .......+.|.|....+.....|+|.|.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            34678999999998 554 48999999988753211         0112234567777766667679999999975543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=2.6e-05  Score=56.34  Aligned_cols=66  Identities=23%  Similarity=0.375  Sum_probs=45.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.... ....+.|++....  ..              .............|.|.+++.+|+|.|.|.
T Consensus         9 ~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1           9 IMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEE
Confidence            467889999999998653 3345889974221  10              111112234567899999999999999997


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        88 ~~~   90 (104)
T d1yqvl1          88 QWG   90 (104)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.6e-05  Score=57.44  Aligned_cols=68  Identities=18%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------------CCCceEEee--eceEEEeccCCCC
Q psy17058        190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------------GPDVEVYQE--LGVLRFNNIATGD  247 (471)
Q Consensus       190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------------~~~~~~~~~--~~~l~i~~~~~~d  247 (471)
                      ..++.+|++++|.|.+........+.|||.......                    ..++.....  ...|.|.+++.+|
T Consensus         9 ~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~D   88 (114)
T d1akjd_           9 DRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRREN   88 (114)
T ss_dssp             SCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCC
Confidence            456789999999998844444457999984321000                    112222221  2369999999999


Q ss_pred             CeEEEEEEEc
Q psy17058        248 EGKYTCIAEN  257 (471)
Q Consensus       248 ~G~Y~C~~~~  257 (471)
                      +|.|.|.+..
T Consensus        89 sg~YyCa~~~   98 (114)
T d1akjd_          89 EGYYFCSALS   98 (114)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEeEeEcC
Confidence            9999999864

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.82  E-value=4.1e-05  Score=56.14  Aligned_cols=71  Identities=21%  Similarity=0.382  Sum_probs=48.8

Q ss_pred             ccEEecCCCcEEEEEEEeecC---CCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeE
Q psy17058        282 EYVSVRPGEPLTLECEATGRP---MPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p---~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ..+.+.+|++++|.|...+..   ...+.|++..  +.+.              .............|.|.+++.+|+|.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence            357889999999999976532   2358999742  2111              11111223456789999999999999


Q ss_pred             EEEEEEcCCC
Q psy17058        343 YKCIGKNSAG  352 (471)
Q Consensus       343 Y~C~a~n~~g  352 (471)
                      |.|.+.+..+
T Consensus        88 YyCa~~~~~~   97 (112)
T d1lgva1          88 YYCSSYDGSS   97 (112)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEeeecCCC
Confidence            9998875433

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.81  E-value=2.7e-05  Score=56.81  Aligned_cols=67  Identities=18%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|...+.....+.|++...  ...              .............|+|.+++.+|+|.|.|.
T Consensus        12 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          12 SLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEe
Confidence            4678899999999998765455789997421  110              111111233456899999999999999998


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        92 ~~~   94 (109)
T d1bwwa_          92 QYQ   94 (109)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.7e-05  Score=52.90  Aligned_cols=68  Identities=22%  Similarity=0.372  Sum_probs=43.5

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcccc----cccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLER----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..|+.++|.|.+.| +|.. .++|.++|..+......    .............+...+...|+|.+.+..-..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~~   86 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQ   86 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCCC
Confidence            45789999999999 5543 89999999887632110    111111222333344556668999999975543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.3e-05  Score=54.97  Aligned_cols=68  Identities=19%  Similarity=0.348  Sum_probs=42.1

Q ss_pred             eeEEcCCeEEEEEEccCCC--CCC--eEEEEeCCCCCC----------------cCCCceEEeeeceEEEeccCCCCCeE
Q psy17058        191 QTFIVGDRADIQCVLEAGE--PSP--TQTWIRPDNDGK----------------FGPDVEVYQELGVLRFNNIATGDEGK  250 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~--p~~--~v~W~~~~~~~~----------------~~~~~~~~~~~~~l~i~~~~~~d~G~  250 (471)
                      +.+..|++++|.|.+....  +..  ...|.+++....                ...+......+..|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            3567899999999883221  112  244444433210                11122233335579999999999999


Q ss_pred             EEEEEEcC
Q psy17058        251 YTCIAENS  258 (471)
Q Consensus       251 Y~C~~~~~  258 (471)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.80  E-value=2.6e-05  Score=54.58  Aligned_cols=64  Identities=11%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .+..++|.|.+.| +|.. .++|+++|..+.......      .....+.|.+.   .++...|+|++.+..-..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            3557899999999 5654 899999998876432211      12223344443   345568999999875544

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.80  E-value=8e-05  Score=52.90  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCcccc-----c---ccCceeEEEEeecCCCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLER-----D---ELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-----~---~~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|.+.+.+..  ....|+..+|.|.+.|+ |. ..++|+++|..+......     .   .....+.|.+.   .++...
T Consensus         5 ~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~   79 (99)
T d1uvqa1           5 VPEVTVFSKS--PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADEI   79 (99)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTTCC
T ss_pred             CCEEEEEcCC--cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCCCE
Confidence            4555443322  24567889999999995 44 379999999877532110     0   11122334443   345568


Q ss_pred             EEEEEEcCCCc
Q psy17058        343 YKCIGKNSAGT  353 (471)
Q Consensus       343 Y~C~a~n~~g~  353 (471)
                      |+|+|.+..-.
T Consensus        80 ytC~V~H~sl~   90 (99)
T d1uvqa1          80 YDCKVEHWGLD   90 (99)
T ss_dssp             EEEEEECTTSS
T ss_pred             EEEEEEeCCCC
Confidence            99999997543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.80  E-value=3.7e-05  Score=56.46  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=46.5

Q ss_pred             cEEecCCCcEEEEEEEeec--CCCeEEEEeC--CccCC------Cc--ccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        283 YVSVRPGEPLTLECEATGR--PMPTVSWVKY--IAPFD------RN--LERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~--p~~~i~W~~~--~~~~~------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      .+.+.+|++++|+|...+.  ....+.|++.  +....      ..  ...........|+|.+++.+|+|.|.|.+..
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_           9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            5678899999999998753  3346999974  22211      01  1111223456899999999999999998864

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.80  E-value=7.3e-05  Score=54.83  Aligned_cols=80  Identities=21%  Similarity=0.341  Sum_probs=52.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC------C---------cccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD------R---------NLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~------~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+.+.+|++++|.|.... ....+.|++..  ..+.      .         ............|.|.+++.+|+|.|.|
T Consensus        10 ~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          10 ALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            467889999999999864 33479999832  2111      0         0011122345689999999999999999


Q ss_pred             EEEcCCCceE----EEEEEEEe
Q psy17058        346 IGKNSAGTEE----KVITVAVE  363 (471)
Q Consensus       346 ~a~n~~g~~~----~~~~l~V~  363 (471)
                      .+....+...    .-..|.|.
T Consensus        89 a~~~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          89 AAEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             EEECSSSSSSCEECCCEEEEEE
T ss_pred             EecCCCCCCeeEECcCEEEEEE
Confidence            8876544321    22356664

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.79  E-value=6.9e-05  Score=53.09  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=43.5

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCcccc-----cccCceeEEEEeecCCCCCeEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      +|.+.+.+..  ....|+..+|.|.+.| +|. ..+.|.++|..+......     .....-.......+..++...|+|
T Consensus         2 ~P~V~v~p~~--~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   79 (97)
T d1uvqb1           2 EPTVTISPSR--TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC   79 (97)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred             CCEEEEecCC--cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEE
Confidence            3445444322  2344677899999999 453 389999999775532110     111112222233445667779999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .+.+..-..
T Consensus        80 ~V~H~sl~~   88 (97)
T d1uvqb1          80 HVEHPSLQS   88 (97)
T ss_dssp             EEECTTCSS
T ss_pred             EEEeCCCCC
Confidence            999975544

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.79  E-value=3.9e-05  Score=56.29  Aligned_cols=69  Identities=16%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCC--------CC-----------c----ccCcEEEEcCCC
Q psy17058         93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------PN-----------M----IAGETLIINGIT  148 (471)
Q Consensus        93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~--------~~-----------~----~~~~~L~i~~v~  148 (471)
                      .|+..|....+.+|++++|.|. .......+.||+.....-+        ..           .    ..+..|.|..++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            4666788889999999999998 4444467999998321100        00           0    034578999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999998653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.78  E-value=2.6e-05  Score=56.65  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=51.4

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      +|.+.+.++.......+..++|.|.+.| +|.. .+.|+++|..+.....       .......+.|.|.....+  ..|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~y   85 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KEH   85 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SCE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--CeE
Confidence            5666665444445667889999999999 4543 7999999987753211       111223345666554442  379


Q ss_pred             EEEEEcCCCce
Q psy17058        344 KCIGKNSAGTE  354 (471)
Q Consensus       344 ~C~a~n~~g~~  354 (471)
                      +|.|.+.....
T Consensus        86 tC~V~H~s~~~   96 (107)
T d1hxmb2          86 RCIVRHENNKN   96 (107)
T ss_dssp             EEEEEETTSGG
T ss_pred             EEEEEECCCCC
Confidence            99999976544

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=2.5e-05  Score=56.72  Aligned_cols=67  Identities=12%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc---------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE---------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      .++.++|.|.+.| +|.. .|+|.++|..+.....         .......+.|.|..-.+.....|+|.|.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            3667999999998 5543 8999999887653211         1112234567777666656679999999976554

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.3e-05  Score=57.70  Aligned_cols=69  Identities=14%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             cEEecCCCcEEEEEEEee--cCCCeEEEEeCCcc--CC------------C-----cc--cccccCceeEEEEeecCCCC
Q psy17058        283 YVSVRPGEPLTLECEATG--RPMPTVSWVKYIAP--FD------------R-----NL--ERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g--~p~~~i~W~~~~~~--~~------------~-----~~--~~~~~~~~~~l~i~~~~~~d  339 (471)
                      ...+.+|++++|.|...+  .....+.|+|....  ..            .     ..  .........+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            357789999999999764  34457889974221  10            0     00  01112344679999999999


Q ss_pred             CeEEEEEEEcCC
Q psy17058        340 AGQYKCIGKNSA  351 (471)
Q Consensus       340 ~G~Y~C~a~n~~  351 (471)
                      +|.|.|.+....
T Consensus        88 sg~Y~Cav~~~~   99 (113)
T d1smoa_          88 SGLYQCVIYQPP   99 (113)
T ss_dssp             CEEEEEEECCTT
T ss_pred             CceEEEEEECCC
Confidence            999999886543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.76  E-value=5.9e-05  Score=55.02  Aligned_cols=68  Identities=22%  Similarity=0.360  Sum_probs=45.8

Q ss_pred             cEEecCCCcEEEEEEEeec-CC---CeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGR-PM---PTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~-p~---~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++|+|.|.+... ..   ..+.|++.  ++...              .............|+|.+++.+|++.
T Consensus        10 s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~   89 (111)
T d2gsia1          10 SLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAAT   89 (111)
T ss_dssp             EEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCce
Confidence            4678899999999987542 11   24899984  22211              11111123345789999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+.+.
T Consensus        90 YyCa~~~~   97 (111)
T d2gsia1          90 YYCSHIRE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99976644

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.4e-05  Score=57.78  Aligned_cols=70  Identities=17%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ..+.+++|.|.+.| +|.. .|+|+++|..+.....       .......+.|.|....+.....|+|.|.+.....++
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            34567899999999 5554 7999999988763321       111223456777776666667899999998654443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.7e-05  Score=58.18  Aligned_cols=71  Identities=18%  Similarity=0.269  Sum_probs=45.9

Q ss_pred             CCceeEEcCCeEEEEEEccCC---C---CCCeEEEEeCCCCCC-----------------cCCCceEEe----eeceEEE
Q psy17058        188 NASQTFIVGDRADIQCVLEAG---E---PSPTQTWIRPDNDGK-----------------FGPDVEVYQ----ELGVLRF  240 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~---~---p~~~v~W~~~~~~~~-----------------~~~~~~~~~----~~~~l~i  240 (471)
                      +...++.+|+.|+|.|.....   .   ....+.|++......                 ...+..+..    .+.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            345678899999999987311   1   124688988643211                 011233322    1346999


Q ss_pred             eccCCCCCeEEEEEEEcC
Q psy17058        241 NNIATGDEGKYTCIAENS  258 (471)
Q Consensus       241 ~~~~~~d~G~Y~C~~~~~  258 (471)
                      .+++.+|+|.|.|++...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.74  E-value=3.4e-05  Score=56.95  Aligned_cols=68  Identities=16%  Similarity=0.387  Sum_probs=46.5

Q ss_pred             ccEEecCCCcEEEEEEEeec-CCCeEEEEeCCc-----cCC------------------Cc---ccccccCceeEEEEee
Q psy17058        282 EYVSVRPGEPLTLECEATGR-PMPTVSWVKYIA-----PFD------------------RN---LERDELTSRAVYTIAS  334 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~-----~~~------------------~~---~~~~~~~~~~~l~i~~  334 (471)
                      ..+.+.+|++++|.|.+.+. ....+.|++...     .+.                  ..   ..........+|.|.+
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMN   85 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECS
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecc
Confidence            35678999999999998763 345799997421     110                  00   0111223456899999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy17058        335 VRESDAGQYKCIGKN  349 (471)
Q Consensus       335 ~~~~d~G~Y~C~a~n  349 (471)
                      ++.+|+|.|.|.+..
T Consensus        86 ~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          86 VKPEDSDFYFCATVG  100 (115)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCCcEEEEeEcC
Confidence            999999999998753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.74  E-value=4.8e-05  Score=55.18  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=46.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|.|.........+.|++..  +.+.              .............|.|.+++.+|+|.|.|.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            567889999999998754333468899732  2111              111112233457899999999999999998


Q ss_pred             EEcC
Q psy17058        347 GKNS  350 (471)
Q Consensus       347 a~n~  350 (471)
                      +...
T Consensus        88 ~~~~   91 (108)
T d1nfde1          88 SSYG   91 (108)
T ss_dssp             EEET
T ss_pred             eecC
Confidence            7643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.74  E-value=7.1e-05  Score=55.37  Aligned_cols=69  Identities=19%  Similarity=0.399  Sum_probs=47.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC--------------C-----ccc-ccccCceeEEEEeecCCCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD--------------R-----NLE-RDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~--------------~-----~~~-~~~~~~~~~l~i~~~~~~d~  340 (471)
                      ...+.+|++++|.|...+.....+.|++.  ++.+.              .     ... .........|.|.+++.+|+
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGC
T ss_pred             eEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccC
Confidence            45788999999999987665568999983  22111              0     000 01123346799999999999


Q ss_pred             eEEEEEEEcCC
Q psy17058        341 GQYKCIGKNSA  351 (471)
Q Consensus       341 G~Y~C~a~n~~  351 (471)
                      |.|.|.+....
T Consensus        90 a~YyCa~~~~~  100 (118)
T d2ij0c1          90 GFYVCSALAGS  100 (118)
T ss_dssp             EEEEEEEECSS
T ss_pred             ceEEEEEecCC
Confidence            99999886543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.3e-05  Score=52.77  Aligned_cols=76  Identities=22%  Similarity=0.329  Sum_probs=49.4

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGK  348 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  348 (471)
                      +|.+...|.  ..+..|++|+|.|... .....+.++|++........    .........+.|.+++.+|+|.|+|...
T Consensus         4 kPsLsa~P~--~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           4 KPTLSAQPS--PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCEEEEESC--SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCEEEeeCC--CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            455666653  3688999999999865 44457888888775432211    1122345789999999999999999876


Q ss_pred             cCC
Q psy17058        349 NSA  351 (471)
Q Consensus       349 n~~  351 (471)
                      ...
T Consensus        81 ~~~   83 (98)
T d1ugna2          81 DSN   83 (98)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.74  E-value=4.5e-05  Score=53.88  Aligned_cols=62  Identities=16%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             CCcEEEEEEEeecCCCeEEEEeCCcc--CC------C-------cc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        289 GEPLTLECEATGRPMPTVSWVKYIAP--FD------R-------NL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       289 g~~v~l~C~~~g~p~~~i~W~~~~~~--~~------~-------~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      |++|+|.|.........+.|++....  ..      .       ..  .........+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999987666668999983221  10      0       00  1112234578999999999999999988754

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=6.2e-05  Score=55.70  Aligned_cols=71  Identities=17%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             ccEEecCCCcEEEEEEEee---cC---CCeEEEEeCCccCC-------------Cc------ccccccCceeEEEEeecC
Q psy17058        282 EYVSVRPGEPLTLECEATG---RP---MPTVSWVKYIAPFD-------------RN------LERDELTSRAVYTIASVR  336 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g---~p---~~~i~W~~~~~~~~-------------~~------~~~~~~~~~~~l~i~~~~  336 (471)
                      ..+.+.+|++|.|.|....   .+   ...+.|++......             ..      ..........+|.|.+++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   87 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence            3568899999999999862   11   12466777533211             00      011112356789999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy17058        337 ESDAGQYKCIGKNSAG  352 (471)
Q Consensus       337 ~~d~G~Y~C~a~n~~g  352 (471)
                      .+|+|.|.|.+....+
T Consensus        88 ~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          88 PEDSGTYNFRFEISDS  103 (118)
T ss_dssp             GGGCEEEEEEEECC-C
T ss_pred             hhHCEEEEEEEEeCCC
Confidence            9999999999976543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.73  E-value=3.1e-05  Score=56.72  Aligned_cols=67  Identities=16%  Similarity=0.296  Sum_probs=46.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.+.+|++++|.|.........+.|++..  ....              ..  ...........|.|.+++.+|+|.|.
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence            467889999999999875444469999742  2211              00  01112234578999999999999999


Q ss_pred             EEEEc
Q psy17058        345 CIGKN  349 (471)
Q Consensus       345 C~a~n  349 (471)
                      |.+..
T Consensus        88 Ca~~~   92 (110)
T d1u3ha1          88 CAASA   92 (110)
T ss_dssp             ECCEE
T ss_pred             eeecC
Confidence            98764

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.3e-05  Score=57.78  Aligned_cols=82  Identities=21%  Similarity=0.372  Sum_probs=50.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeE
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|.+.+.++..... .++.++|.|.+.| +|.. .|.|+++|..+.....        .......+.|.|..........
T Consensus         5 ~P~V~~~~ps~~~~-~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           5 APSVTLFPPSSEEL-QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             CCEEEEECCCHHHH-HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCEEEEECCCHHHh-cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            44554443322222 3667999999999 5543 7999999988764321        1112234566676665555668


Q ss_pred             EEEEEEcCCCceE
Q psy17058        343 YKCIGKNSAGTEE  355 (471)
Q Consensus       343 Y~C~a~n~~g~~~  355 (471)
                      |+|.|.+......
T Consensus        84 ytC~V~H~~~~~~   96 (102)
T d1rzfl2          84 YSCQVTHEGSTVE   96 (102)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCccEE
Confidence            9999999754433

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.72  E-value=3.4e-05  Score=56.14  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             ccEEecCCCcEEEEEEEeec-CCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEE
Q psy17058        282 EYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      ..+.+.+|++++|.|..... ....+.|++....  ..              .............|.|.+++.+|+|.|.
T Consensus         9 ~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (108)
T d2fx7l1           9 GTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYY   88 (108)
T ss_dssp             SEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEe
Confidence            35678999999999997643 2336889985221  11              0111112234578999999999999999


Q ss_pred             EEEEc
Q psy17058        345 CIGKN  349 (471)
Q Consensus       345 C~a~n  349 (471)
                      |.+.+
T Consensus        89 Ca~~~   93 (108)
T d2fx7l1          89 CQQYG   93 (108)
T ss_dssp             EEECS
T ss_pred             eecCC
Confidence            98753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.70  E-value=7.8e-05  Score=54.50  Aligned_cols=68  Identities=18%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD--------------RN--LERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ..+.+.+|++++|.|...+.....+.|++.  ++...              ..  ..........+|.|.+++.+|+|.|
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY   87 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE
Confidence            346788999999999987655567889974  22211              00  1111234568999999999999999


Q ss_pred             EEEEEc
Q psy17058        344 KCIGKN  349 (471)
Q Consensus       344 ~C~a~n  349 (471)
                      .|.+..
T Consensus        88 yCa~~~   93 (111)
T d1bd2d1          88 FCAAME   93 (111)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=2.4e-05  Score=57.86  Aligned_cols=67  Identities=19%  Similarity=0.329  Sum_probs=46.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI  346 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  346 (471)
                      .+.+.+|++++|+|...+.-...+.|++...  ...              .............|.|.+++.+|+|.|.|.
T Consensus        10 sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa   89 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY   89 (119)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEee
Confidence            4568899999999987654444699998422  111              111111233456899999999999999998


Q ss_pred             EEc
Q psy17058        347 GKN  349 (471)
Q Consensus       347 a~n  349 (471)
                      +..
T Consensus        90 ~~~   92 (119)
T d1f3rb2          90 QYN   92 (119)
T ss_dssp             EES
T ss_pred             ccC
Confidence            764

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.7e-05  Score=54.79  Aligned_cols=66  Identities=14%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc---------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE---------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ++.++|.|.+.| +|.. .|+|.++|..+.....         .......+.|.|..-.+.....|+|.|.+.....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            568999999998 5543 8999999887653321         1112334567777766666669999999976544

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=5e-05  Score=55.20  Aligned_cols=67  Identities=22%  Similarity=0.405  Sum_probs=46.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC---eEEEEeC--CccC--------------CCcccccccCceeEEEEeecCCCCCeEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP---TVSWVKY--IAPF--------------DRNLERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~--~~~~--------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      .+.+.+|++++|.|...+....   .+.|++.  ++..              ..............|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            4678899999999998743322   3889973  1111              1111112234567899999999999999


Q ss_pred             EEEEEc
Q psy17058        344 KCIGKN  349 (471)
Q Consensus       344 ~C~a~n  349 (471)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998765

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.68  E-value=5.4e-05  Score=55.28  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             cEEecCCCcEEEEEEEeecC----CCeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRP----MPTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p----~~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++|+|.|......    ...+.|++.  ++...              .............|.|.+++.+|+|.
T Consensus        10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   89 (111)
T d1j05a_          10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCcc
Confidence            45788999999999875321    124999984  32211              11111223456799999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+.+.
T Consensus        90 YyCa~~~~   97 (111)
T d1j05a_          90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEeecCC
Confidence            99987643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.67  E-value=6.8e-05  Score=53.32  Aligned_cols=73  Identities=19%  Similarity=0.360  Sum_probs=47.4

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-C-CCCeEEEEeCCCCCCCCCcc-------cCcE---EEEcCCCCCCCeEEE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-D-PSATIKWSKDNQEQLPPNMI-------AGET---LIINGITKADEGVYI  156 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~-p~~~v~W~~~~~~~~~~~~~-------~~~~---L~i~~v~~~D~G~Y~  156 (471)
                      .+|.+++.|.. .+..|+.++|.|. .+ + +...|+|+++ |..+.....       .+++   .....+..++.+.|+
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~n-g~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~yt   79 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRN-SKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYD   79 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEES-SSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeC-CeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEE
Confidence            57888887654 4667899999999 43 2 4579999999 655543221       1111   112223446677899


Q ss_pred             EEEEecCC
Q psy17058        157 CSIQNAQG  164 (471)
Q Consensus       157 C~~~~~~~  164 (471)
                      |++.+..-
T Consensus        80 C~V~H~sl   87 (100)
T d1muja1          80 CKVEHWGL   87 (100)
T ss_dssp             EEEECTTS
T ss_pred             EEEEECCC
Confidence            99998643

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.67  E-value=1.7e-05  Score=59.77  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             CCceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------------ccccCceeEEEEeecCC
Q psy17058        273 LPAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------------RDELTSRAVYTIASVRE  337 (471)
Q Consensus       273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~  337 (471)
                      +|.+.+.++.......+..++|.|.+.| +|.. .|.|+++|+.+.....             .......+.|.|....+
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            5555554332223445778999999999 5543 7999999887653211             11122346777877776


Q ss_pred             CCCe-EEEEEEEcCCC
Q psy17058        338 SDAG-QYKCIGKNSAG  352 (471)
Q Consensus       338 ~d~G-~Y~C~a~n~~g  352 (471)
                      .+.| .|+|.|.+...
T Consensus        84 ~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          84 QNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             TCTTCEEEEEEEECCB
T ss_pred             CCCCCEEEEEEEECCC
Confidence            6755 79999998654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.66  E-value=6.8e-05  Score=54.74  Aligned_cols=68  Identities=18%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             cEEecCCCcEEEEEEEeec--CCCeEEEEeCC--ccCC----Cc----ccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058        283 YVSVRPGEPLTLECEATGR--PMPTVSWVKYI--APFD----RN----LERDELTSRAVYTIASVRESDAGQYKCIGKNS  350 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~--p~~~i~W~~~~--~~~~----~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  350 (471)
                      .+.+.+|++++|.|...+.  ....+.|++..  +...    ..    ...........|+|.+++.+|+|.|.|.+...
T Consensus         8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_           8 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            4677899999999998653  34579999842  2111    10    01111234568999999999999999987654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.65  E-value=8.1e-05  Score=54.32  Aligned_cols=67  Identities=19%  Similarity=0.369  Sum_probs=44.8

Q ss_pred             cEEecCCCcEEEEEEEeecC-----CCeEEEEeCCc--cCC--------------CcccccccCceeEEEEeecCCCCCe
Q psy17058        283 YVSVRPGEPLTLECEATGRP-----MPTVSWVKYIA--PFD--------------RNLERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p-----~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      .+.+.+|++|+|.|.+.+..     ...+.|++...  .+.              .............|.|.+++.+|+|
T Consensus        10 sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          10 TISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             EEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCE
Confidence            46788999999999975422     12588997422  111              1111112335568999999999999


Q ss_pred             EEEEEEEc
Q psy17058        342 QYKCIGKN  349 (471)
Q Consensus       342 ~Y~C~a~n  349 (471)
                      .|.|...+
T Consensus        90 vYYC~~~~   97 (112)
T d1ncwl1          90 VYYCWQGT   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcCC
Confidence            99996543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.64  E-value=0.00022  Score=50.89  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=45.0

Q ss_pred             ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      +..|+..+|.|.+.| +|.. .+.|+++|..+.....       .......+.|.|   ..++...|+|.+.+..-....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~~p~   91 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDRYTA   91 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTTEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCCCCE
Confidence            456888899999999 5543 7999999987653211       011122233444   344555799999998655544


Q ss_pred             EEE
Q psy17058        357 VIT  359 (471)
Q Consensus       357 ~~~  359 (471)
                      ...
T Consensus        92 ~~~   94 (103)
T d1hdma1          92 IAY   94 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9.9e-05  Score=51.53  Aligned_cols=66  Identities=21%  Similarity=0.397  Sum_probs=49.7

Q ss_pred             CCceeecCCCcEEEEeeCCCCCCeEEEEe-CCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058         98 PRQQSAPEGSQVTIECKSNDPSATIKWSK-DNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQ  163 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~~~~p~~~v~W~~-~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~  163 (471)
                      |+.+.+.+|+++.|.|....|...++-++ .++...+....    ....++|.+++..|.|.|.|.+....
T Consensus        12 p~~V~v~eg~~~vIPC~vT~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSCTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEeCCCCEEEEccCCCCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEECC
Confidence            34567999999999999667777765544 53444443322    56789999999999999999997653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.5e-05  Score=56.07  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             eeecCCCcEEEEee-CCC--CCCe-EEEEeCCCCCCC-----------------CCcc-------cCcEEEEcCCCCCCC
Q psy17058        101 QSAPEGSQVTIECK-SND--PSAT-IKWSKDNQEQLP-----------------PNMI-------AGETLIINGITKADE  152 (471)
Q Consensus       101 ~~v~~G~~v~l~C~-~~~--p~~~-v~W~~~~~~~~~-----------------~~~~-------~~~~L~i~~v~~~D~  152 (471)
                      ..+.+|++++|.|. ...  .... +.|++..+..++                 .+..       ....|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            45778999999998 332  2222 345555322211                 0000       223799999999999


Q ss_pred             eEEEEEEEe
Q psy17058        153 GVYICSIQN  161 (471)
Q Consensus       153 G~Y~C~~~~  161 (471)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=5.6e-05  Score=54.20  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=42.4

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-----ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV  357 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  357 (471)
                      ..++.++|.|.+.| +|.. .|.|.+++......     .........+.|.|...... .+.|+|.|.+..+.....
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTKVD   94 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEEEE
Confidence            35788999999999 4543 89997766443211     11112233456777766653 568999999987655443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.60  E-value=6.9e-05  Score=54.87  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=46.6

Q ss_pred             cEEecCCCcEEEEEEEeecCC-CeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCCCeEEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPM-PTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      .+.+.+|++|+|.|...+... ..+.|++.  ++.+.              .............|.|.+++.+|+|.|.|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence            467889999999999875443 35999984  22221              01111223445689999999999999999


Q ss_pred             EEEc
Q psy17058        346 IGKN  349 (471)
Q Consensus       346 ~a~n  349 (471)
                      .+..
T Consensus        87 a~~~   90 (112)
T d1kgcd1          87 ILPL   90 (112)
T ss_dssp             ECCC
T ss_pred             eEec
Confidence            7754

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=0.00025  Score=51.73  Aligned_cols=66  Identities=15%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC------------------Ccc-cccccCceeEEEEeecCCCCCe
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD------------------RNL-ERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~------------------~~~-~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      ...+.+|++++|.|... .....+.|++.  ++...                  ... ..........|+|.+++.+|+|
T Consensus         8 ~~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA   86 (112)
T ss_dssp             EEEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence            45678999999999854 33457999983  22110                  000 1112234578999999999999


Q ss_pred             EEEEEEEc
Q psy17058        342 QYKCIGKN  349 (471)
Q Consensus       342 ~Y~C~a~n  349 (471)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (112)
T d1kgce1          87 VYLCASSL   94 (112)
T ss_dssp             EEEEEEES
T ss_pred             EEEEeeeC
Confidence            99998764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.60  E-value=8.8e-05  Score=54.19  Aligned_cols=66  Identities=20%  Similarity=0.381  Sum_probs=45.0

Q ss_pred             ccEEecCCCcEEEEEEEeecC-----CCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGRP-----MPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p-----~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      ..+.+.+|++|+|.|...+..     ...+.|++..  +...              .............|.|.+++.+|+
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds   88 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV   88 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC
Confidence            356788999999999986531     2368998742  2211              111112234567899999999999


Q ss_pred             eEEEEEE
Q psy17058        341 GQYKCIG  347 (471)
Q Consensus       341 G~Y~C~a  347 (471)
                      +.|.|..
T Consensus        89 AvYyCa~   95 (112)
T d1mjul1          89 GVYYCLQ   95 (112)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            9999953

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.59  E-value=7.5e-05  Score=54.70  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             ccEEecCCCcEEEEEEEeec---CC---CeEEEEeC--CccCC--------------CcccccccCceeEEEEeecCCCC
Q psy17058        282 EYVSVRPGEPLTLECEATGR---PM---PTVSWVKY--IAPFD--------------RNLERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~---p~---~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+.+.+|++++|.|...+.   ..   ..+.|++.  ++...              .............|.|.+++.+|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D   88 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED   88 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence            35678899999999987532   11   24899984  22211              11111223455689999999999


Q ss_pred             CeEEEEEEEc
Q psy17058        340 AGQYKCIGKN  349 (471)
Q Consensus       340 ~G~Y~C~a~n  349 (471)
                      +|.|.|-+.+
T Consensus        89 sa~YyCA~~~   98 (113)
T d1q9ra1          89 LAVYYCKQSY   98 (113)
T ss_dssp             CEEEEEEECS
T ss_pred             CeEEEecccC
Confidence            9999997654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.59  E-value=0.00012  Score=53.26  Aligned_cols=69  Identities=22%  Similarity=0.310  Sum_probs=47.8

Q ss_pred             ccEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEE
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ..+.+.+|++++|.|.........+.|++..  +.+.              ..  ...........|.|.+++.+|+|.|
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Y   87 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVY   87 (110)
T ss_dssp             SEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCccc
Confidence            3567889999999999875444579999842  2111              00  0111223457899999999999999


Q ss_pred             EEEEEcC
Q psy17058        344 KCIGKNS  350 (471)
Q Consensus       344 ~C~a~n~  350 (471)
                      .|.+...
T Consensus        88 yCA~~~~   94 (110)
T d1ac6a_          88 YCALSGG   94 (110)
T ss_dssp             EEEEEET
T ss_pred             ceeecCC
Confidence            9988754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=7e-05  Score=53.57  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCc-----ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRN-----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      ..++.++|.|.+.| +|.. .|.|.+++......     .........+.|.|...... .|.|+|.|.+.......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v   93 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTAA   93 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCeee
Confidence            45789999999999 5543 89998877554311     11112233456777666653 57899999997665543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=0.00015  Score=50.40  Aligned_cols=62  Identities=23%  Similarity=0.377  Sum_probs=39.6

Q ss_pred             cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      ..++.++|.|.+.| +|.. .++|+++|+.+.....        .......+.|.|..-   +...|+|.|.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            44678999999999 4433 7999999987653221        011122344555432   3347999998864

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.57  E-value=9.2e-05  Score=54.52  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC---------------cCCCceEEee----eceEEEeccCCCCC
Q psy17058        188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---------------FGPDVEVYQE----LGVLRFNNIATGDE  248 (471)
Q Consensus       188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~---------------~~~~~~~~~~----~~~l~i~~~~~~d~  248 (471)
                      +....+.+|++|+|.|..........+.|||......               ...++.+...    ...|.|.+++.+|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            3455788999999999874444455789998432100               0112222221    23599999999999


Q ss_pred             eEEEEEEEcC
Q psy17058        249 GKYTCIAENS  258 (471)
Q Consensus       249 G~Y~C~~~~~  258 (471)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1fo0a_          86 AVYFCAMRGD   95 (115)
T ss_dssp             EEEEEEEECC
T ss_pred             ccccceeecC
Confidence            9999988644

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.57  E-value=3.8e-05  Score=55.20  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .++.++|.|.+.| +|.. .|.|.++|.......       ........+.|.|..-.+.....|+|.|.+..-
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            4778999999999 5643 899999987654221       111223446677776666666689999998653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.56  E-value=0.00015  Score=52.76  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC-------------C----c-ccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD-------------R----N-LERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~-------------~----~-~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ...+.+|++++|.|...+ ....+.|++..  +...             .    . ...........|+|.+++.+|+|.
T Consensus        10 ~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            457889999999998764 34579999832  2110             0    0 011112345789999999999999


Q ss_pred             EEEEEEc
Q psy17058        343 YKCIGKN  349 (471)
Q Consensus       343 Y~C~a~n  349 (471)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9998764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=9.9e-05  Score=52.53  Aligned_cols=80  Identities=10%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceE-Eeeece---EEEeccCCCCCeEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEV-YQELGV---LRFNNIATGDEGKYTC  253 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~-~~~~~~---l~i~~~~~~d~G~Y~C  253 (471)
                      .+|.+.+.+..  ....|+.++|.|.+.+.+|. ..++|.++|..+........ ...+++   .....+...+.+.|+|
T Consensus         3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            34555554332  23468889999999665665 58999999876443221111 111111   1122234556778999


Q ss_pred             EEEcCCC
Q psy17058        254 IAENSAG  260 (471)
Q Consensus       254 ~~~~~~~  260 (471)
                      ++.+..-
T Consensus        81 ~V~H~sl   87 (99)
T d1lk2b_          81 RVKHDSM   87 (99)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9988643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.55  E-value=0.0002  Score=52.21  Aligned_cols=67  Identities=13%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC------------------Ccc-cccccCceeEEEEeecCCCCCe
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD------------------RNL-ERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~------------------~~~-~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      ...+.+|++++|.|...+ ....+.|++..  +.+.                  ... ..........|+|.+++.+|+|
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   86 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG   86 (111)
T ss_dssp             EEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence            457889999999998543 23479999742  1111                  000 0011233468999999999999


Q ss_pred             EEEEEEEcC
Q psy17058        342 QYKCIGKNS  350 (471)
Q Consensus       342 ~Y~C~a~n~  350 (471)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (111)
T d2esve1          87 VYFCASSQD   95 (111)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeeCC
Confidence            999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=7.9e-05  Score=54.46  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=47.4

Q ss_pred             ccEEecCCCcEEEEEEEeecCC--CeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCe
Q psy17058        282 EYVSVRPGEPLTLECEATGRPM--PTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      ..+.+.+|++++|.|...+...  .-+.|++..  +.+.              ..  ...........|.|.+++.+|+|
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            3578899999999999875432  248999742  2111              11  11112345679999999999999


Q ss_pred             EEEEEEEcC
Q psy17058        342 QYKCIGKNS  350 (471)
Q Consensus       342 ~Y~C~a~n~  350 (471)
                      .|.|.+.+.
T Consensus        88 ~YyCA~~~~   96 (111)
T d1cd0a_          88 DYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEeeccC
Confidence            999987643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.8e-05  Score=55.21  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      .++.++|.|.+.| +|.. .|+|+++|.......       ........+.|.|..-.....-.|+|.|.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            3678999999999 5543 899999988754321       111223345677776666566689999999754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00018  Score=53.00  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCC---eEEEEeCC--ccCC---------------Cc--ccccccCceeEEEEeecCCCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP---TVSWVKYI--APFD---------------RN--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~~--~~~~---------------~~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+.+.+|++++|.|........   .+.|++..  +...               ..  ...........|.|.+++.+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            4577889999999998643222   47899842  2110               00  0111224567899999999999


Q ss_pred             eEEEEEEEc
Q psy17058        341 GQYKCIGKN  349 (471)
Q Consensus       341 G~Y~C~a~n  349 (471)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999998763

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00013  Score=53.12  Aligned_cols=61  Identities=26%  Similarity=0.481  Sum_probs=41.4

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCC-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQ-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|++++|.|. .+.  ....+.|+|.. ++.                   +..+..       ....|+|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            446889999999998 433  34468999861 111                   111111       223599999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDsAvYYCA~~   99 (119)
T d1qnzh_          89 DDSAVYYCAIH   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cceeEEEEEEe
Confidence            99999999654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.51  E-value=0.00013  Score=53.58  Aligned_cols=80  Identities=21%  Similarity=0.449  Sum_probs=52.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC--------------Cc--ccccccCceeEEEEeecCCCCCeEEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD--------------RN--LERDELTSRAVYTIASVRESDAGQYK  344 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~--------------~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~  344 (471)
                      .+.+.+|++++|.|...+. ...+.|++..  +.+.              ..  ...........|.|.+++.+|+|.|.
T Consensus         9 ~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1           9 FLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             EEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            4678899999999997643 3479999842  1111              00  11122345678999999999999999


Q ss_pred             EEEEcCCCce--EEEEEEEEe
Q psy17058        345 CIGKNSAGTE--EKVITVAVE  363 (471)
Q Consensus       345 C~a~n~~g~~--~~~~~l~V~  363 (471)
                      |.+....+..  -.-..|.|.
T Consensus        88 Ca~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          88 CAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EEEECTTSSEEECCCEEEEEE
T ss_pred             ccccCCCCCcEECCCEEEEEe
Confidence            9887544322  122455665

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00021  Score=46.51  Aligned_cols=57  Identities=18%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             ecCCCcEEEEee---CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058        103 APEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNA  162 (471)
Q Consensus       103 v~~G~~v~l~C~---~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~  162 (471)
                      ...|..+.|.|.   .+.+...-.|.|+ +..+.+...  ..-.+.|..  .+|+|.|.|.....
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~-gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCCCSEEEEEECG--GGCCEEEEEEEEST
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeC-CEEccccCCCCCceEEEEec--CCCCceEEEEEcCC
Confidence            356888999999   3334456789999 766665444  233455653  77899999997643

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=5e-05  Score=54.40  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=45.2

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      ..+.+.|.|.+.| +|.. .|.|.++|..+....       ........+.|.|..-.......|+|.|.+..-
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            3567899999999 5643 899999998765321       111223456677776666667799999999753

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00037  Score=45.30  Aligned_cols=58  Identities=16%  Similarity=0.331  Sum_probs=42.8

Q ss_pred             cCCCcEEEEEEEeecCCC--eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058        287 RPGEPLTLECEATGRPMP--TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN  349 (471)
Q Consensus       287 ~~g~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  349 (471)
                      ..|..+.|+|.....+.+  --.|+|+|+.+....   .......+.|..  .+++|.|.|..-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~---~~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT---CCCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccC---CCCCceEEEEec--CCCCceEEEEEcC
Confidence            458888999999865443  578999999987542   234556677764  7899999999653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00016  Score=47.61  Aligned_cols=72  Identities=24%  Similarity=0.494  Sum_probs=49.8

Q ss_pred             CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC----CcCCCce-EEee-----eceEEEeccCCCCCeEEEEEEEcC
Q psy17058        189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG----KFGPDVE-VYQE-----LGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~----~~~~~~~-~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      ....+..|+.+.|.|.+.--...+.++|-|-++..    ....... ....     --.|.+..+...|.|.|+|.+.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            34567889999999999666777899999866542    1111111 1111     124788899999999999999654


Q ss_pred             CC
Q psy17058        259 AG  260 (471)
Q Consensus       259 ~~  260 (471)
                      .+
T Consensus        91 s~   92 (104)
T d1xaua_          91 SQ   92 (104)
T ss_dssp             TE
T ss_pred             hh
Confidence            43

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.50  E-value=0.00016  Score=52.78  Aligned_cols=67  Identities=16%  Similarity=0.336  Sum_probs=45.6

Q ss_pred             cEEecCCCcEEEEEEEeecC-----CCeEEEEeCC--ccCC--------------CcccccccCceeEEEEeecCCCCCe
Q psy17058        283 YVSVRPGEPLTLECEATGRP-----MPTVSWVKYI--APFD--------------RNLERDELTSRAVYTIASVRESDAG  341 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p-----~~~i~W~~~~--~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G  341 (471)
                      .+.+.+|++|+|.|...+..     ...+.|++..  +...              .............|+|.+++.+|+|
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   90 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   90 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCE
Confidence            46788999999999986421     2368999742  2111              1111112345679999999999999


Q ss_pred             EEEEEEEc
Q psy17058        342 QYKCIGKN  349 (471)
Q Consensus       342 ~Y~C~a~n  349 (471)
                      .|.|...+
T Consensus        91 vYyCa~~~   98 (113)
T d1n4xl_          91 IYYCFQGS   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            99996554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.49  E-value=0.00018  Score=52.76  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=45.9

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC-----------------C-cccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD-----------------R-NLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~-----------------~-~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|... .....+.|++....  +.                 . ............|.|.+++.+|+|.
T Consensus         8 ~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~   86 (114)
T d1ogae1           8 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   86 (114)
T ss_dssp             EEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             eEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence            46788999999999975 33457999974221  10                 0 0001112345689999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+...
T Consensus        87 YyCa~~~~   94 (114)
T d1ogae1          87 YLCASSSR   94 (114)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccC
Confidence            99977654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00012  Score=52.13  Aligned_cols=80  Identities=11%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCce-EEeeece---EEEeccCCCCCeEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVE-VYQELGV---LRFNNIATGDEGKYTC  253 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~---l~i~~~~~~d~G~Y~C  253 (471)
                      .+|.+.+.+..  .+..|+.++|.|.+.+.+|. ..++|.+||..+....... ....+++   .....+..++.+.|+|
T Consensus         4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           4 RTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            45665554322  23568899999999655565 5999999987653211111 1111222   1222334566779999


Q ss_pred             EEEcCCC
Q psy17058        254 IAENSAG  260 (471)
Q Consensus       254 ~~~~~~~  260 (471)
                      ++.+..-
T Consensus        82 ~V~H~sl   88 (100)
T d1k5nb_          82 RVNHVTL   88 (100)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9998643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.49  E-value=0.00011  Score=51.81  Aligned_cols=61  Identities=25%  Similarity=0.320  Sum_probs=40.0

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSA  351 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  351 (471)
                      .++.++|.|.+.| +|.. .++|++++..+.....       .......+.|.|..   ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            4568999999999 6655 8999999877653211       01112234455544   34457999999865

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00012  Score=53.35  Aligned_cols=62  Identities=15%  Similarity=0.356  Sum_probs=41.8

Q ss_pred             ceeecCCCcEEEEee-CCC----CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND----PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~----p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      ...+++|++|+|.|. .+.    ....+.|+|... +.+                  ..+..       ....|+|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            456888999999998 332    334688998621 111                  11111       22469999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00026  Score=52.22  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             cEEecCCCcEEEEEEEeecCCC---eEEEEeCCcc--CC-----------------CcccccccCceeEEEEeecCCCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP---TVSWVKYIAP--FD-----------------RNLERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~~~~--~~-----------------~~~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+.+.+|++++|.|........   .+.|+|....  ..                 .............|.|.+++.+|+
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            4567889999999998543222   5889985321  10                 001112234567899999999999


Q ss_pred             eEEEEEEEc
Q psy17058        341 GQYKCIGKN  349 (471)
Q Consensus       341 G~Y~C~a~n  349 (471)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (118)
T d1i8lc_          88 GLYICKVEL   96 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeEec
Confidence            999998764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.47  E-value=1.1e-05  Score=57.30  Aligned_cols=70  Identities=21%  Similarity=0.405  Sum_probs=46.9

Q ss_pred             EEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC--------------Ccc--cccccCceeEEEEeecCCCCCeEEEE
Q psy17058        284 VSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD--------------RNL--ERDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~--------------~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      +.|.+|++|+|.|.... ....+.|++.  ++.+.              ...  ..........|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            35789999999998753 2347999973  22211              000  11112234679999999999999999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .+....|..
T Consensus        82 A~~~~~g~~   90 (96)
T d1ymmd1          82 ATDTTSGTY   90 (96)
T ss_dssp             EEEETTSCS
T ss_pred             eEecCCCCc
Confidence            887765543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00036  Score=50.85  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=44.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC-----------------C-cccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD-----------------R-NLERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~-----------------~-~~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ...+.+|++++|.|.... -...+.|++...  .+.                 . ............|.|.++..+|+|.
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            356889999999998753 345799997321  110                 0 0111122334689999999999999


Q ss_pred             EEEEEEc
Q psy17058        343 YKCIGKN  349 (471)
Q Consensus       343 Y~C~a~n  349 (471)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (112)
T d2bnub1          87 YFCASSY   93 (112)
T ss_dssp             EEEEEEC
T ss_pred             EEEeecC
Confidence            9998764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00023  Score=50.12  Aligned_cols=62  Identities=19%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             CCcEEEEEEEeec-CCC-eEEEEeCCccCCCcccc----c----ccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATGR-PMP-TVSWVKYIAPFDRNLER----D----ELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g~-p~~-~i~W~~~~~~~~~~~~~----~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      +..++|.|.+.|+ |.. .++|+++|..+......    .    .....+.|.+   ..++...|+|++.+..-.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~L~   86 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEGLP   86 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTCS
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECcCC
Confidence            5579999999994 433 79999999877632110    0    1112223333   334445899999997543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.8e-05  Score=55.90  Aligned_cols=80  Identities=13%  Similarity=0.330  Sum_probs=50.9

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCc------------eEEeeeceEEEeccCCC
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDV------------EVYQELGVLRFNNIATG  246 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~------------~~~~~~~~l~i~~~~~~  246 (471)
                      +|.+.+.++....+..++.++|.|.+.+.+|. ..|+|+++|..+......            ..+...+.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            45555554433345568899999999666665 499999998764332110            01112345666655555


Q ss_pred             CCeEEEEEEEcCC
Q psy17058        247 DEGKYTCIAENSA  259 (471)
Q Consensus       247 d~G~Y~C~~~~~~  259 (471)
                      ....|+|++.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            5779999998864

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00021  Score=50.24  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=45.2

Q ss_pred             cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058        195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN  265 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  265 (471)
                      .++.++|.|.+.+.+|.+.|+|+++++.+......       ..+...+.|.+.   ..+...|+|.+.+..-.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence            47789999999777899999999998764332111       111213345554   345679999999876554433

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.43  E-value=0.00034  Score=50.26  Aligned_cols=63  Identities=17%  Similarity=0.321  Sum_probs=43.3

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      ...+++|+++.|.|. ++.  ....+.|++... ..+                  ..+..       ....|+|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            456899999999999 443  445788998721 111                  11111       2346999999999


Q ss_pred             CCeEEEEEEEec
Q psy17058        151 DEGVYICSIQNA  162 (471)
Q Consensus       151 D~G~Y~C~~~~~  162 (471)
                      |++.|.|.....
T Consensus        89 DtAvYyCAr~~~  100 (116)
T d7fabh1          89 DTAVYYCARNLI  100 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cceEEEeeeecC
Confidence            999999976443

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.42  E-value=0.00031  Score=51.87  Aligned_cols=68  Identities=28%  Similarity=0.431  Sum_probs=46.8

Q ss_pred             cEEecCCCcEEEEEEEeecC--CCeEEEEeC--CccCC--------------Ccc--cccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRP--MPTVSWVKY--IAPFD--------------RNL--ERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~--~~~~~--------------~~~--~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|...+..  ...+.|++.  |+.+.              ...  ..........|.|.+++.+|+|.
T Consensus        10 sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~   89 (120)
T d1hxma1          10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS   89 (120)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             CEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCce
Confidence            56788999999999997643  246999973  22211              111  11112345789999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.....
T Consensus        90 YyCA~~~~   97 (120)
T d1hxma1          90 YYCACDTL   97 (120)
T ss_dssp             EEEEEECC
T ss_pred             eecCcccC
Confidence            99976543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00018  Score=51.84  Aligned_cols=60  Identities=23%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|++... +.                   +..+..       ....|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            456899999999999 443  345688988611 00                   001111       223699999999


Q ss_pred             CCCeEEEEEE
Q psy17058        150 ADEGVYICSI  159 (471)
Q Consensus       150 ~D~G~Y~C~~  159 (471)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999954

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00042  Score=50.03  Aligned_cols=69  Identities=16%  Similarity=0.308  Sum_probs=46.8

Q ss_pred             EEecCCCcEEEEEEEeec--CCCeEEEEeC--CccCC-----C------------c--ccccccCceeEEEEeecCCCCC
Q psy17058        284 VSVRPGEPLTLECEATGR--PMPTVSWVKY--IAPFD-----R------------N--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~--p~~~i~W~~~--~~~~~-----~------------~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      ..+.+|++++|.|...+.  ..-.+.|++.  ++...     .            .  ..........+|+|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            467899999999998763  4457889984  22110     0            0  0111123446799999999999


Q ss_pred             eEEEEEEEcCCC
Q psy17058        341 GQYKCIGKNSAG  352 (471)
Q Consensus       341 G~Y~C~a~n~~g  352 (471)
                      |.|.|...+...
T Consensus        85 a~YyCa~~~~~~   96 (110)
T d1u9ka_          85 GLYRCVIYHPPN   96 (110)
T ss_dssp             EEEEEEEECTTS
T ss_pred             EEEEEEEeCCCC
Confidence            999998865543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=0.00041  Score=50.67  Aligned_cols=67  Identities=19%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCC--ccCC-----------------Cc-ccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYI--APFD-----------------RN-LERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~--~~~~-----------------~~-~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|... .....+.|++..  +.+.                 .. ...........|.|.+++.+|+|.
T Consensus         9 ~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   87 (113)
T d1j8he1           9 YLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSM   87 (113)
T ss_dssp             EEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCccc
Confidence            45778999999999864 334578999732  1110                 00 001112345689999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (113)
T d1j8he1          88 YLCASSST   95 (113)
T ss_dssp             EEEEEECT
T ss_pred             EEeeEccC
Confidence            99988753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.39  E-value=0.00027  Score=51.67  Aligned_cols=67  Identities=21%  Similarity=0.371  Sum_probs=45.5

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC-----------------Cc-ccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD-----------------RN-LERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~-----------------~~-~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ...+.+|++++|.|...+ ....+.|++.  ++...                 .. ...........|+|.+++.+|+|.
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSAL   86 (113)
T ss_dssp             EEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccccee
Confidence            457789999999998653 2347899983  22211                 00 011112345689999999999999


Q ss_pred             EEEEEEcC
Q psy17058        343 YKCIGKNS  350 (471)
Q Consensus       343 Y~C~a~n~  350 (471)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (113)
T d2ntsp1          87 YLCASSLA   94 (113)
T ss_dssp             EEEEEESS
T ss_pred             eeeeeeCC
Confidence            99988754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.0001  Score=52.79  Aligned_cols=65  Identities=9%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             CCcEEEEEEEee-cCC-CeEEEEeCCccCCCcc----c---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATG-RPM-PTVSWVKYIAPFDRNL----E---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~----~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      .+.+.|.|.+.| +|. ..|+|.++|.......    .   .......+.|.|....+.....|+|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            567899999998 454 3899999998765321    1   111223455777776666667899999997543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.35  E-value=0.00042  Score=51.07  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=45.0

Q ss_pred             cEEecCCCcEEEEEEEeecC--CCeEEEEeCC--ccCC------------------Cccc--ccccCceeEEEEeecCCC
Q psy17058        283 YVSVRPGEPLTLECEATGRP--MPTVSWVKYI--APFD------------------RNLE--RDELTSRAVYTIASVRES  338 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~~--~~~~------------------~~~~--~~~~~~~~~l~i~~~~~~  338 (471)
                      .+...+|++++|.|.+.+..  ...+.|++..  +.+.                  ....  .........|.|.+++.+
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~   89 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence            45677899999999987532  3468999842  2111                  0000  011234567999999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |+|.|.|.+..
T Consensus        90 Dsa~YyCA~~~  100 (120)
T d1ypzf1          90 DEAIYYCSYGE  100 (120)
T ss_dssp             GCSEEEEEECC
T ss_pred             cceeEEEEEcC
Confidence            99999997654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.35  E-value=1.3e-05  Score=58.05  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             CCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc----c---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058        289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE----R---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE  355 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~----~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  355 (471)
                      ++.+.|.|.+.| +|.. .|.|.++|..+.....    .   ......+.|.|......+...|+|.|.+......
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~   95 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE   95 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEE
Confidence            567899999999 5543 8999999987763321    0   0111234455555555566789999999866543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.35  E-value=0.00045  Score=50.38  Aligned_cols=68  Identities=12%  Similarity=0.181  Sum_probs=45.6

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC-----------------Ccc-cccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD-----------------RNL-ERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~-----------------~~~-~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      .+.+.+|++++|.|.... ....+.|++....  +.                 ... ..........|+|.+++.+|+|.
T Consensus        10 ~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (113)
T d1nfdb1          10 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   88 (113)
T ss_dssp             EEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEE
T ss_pred             EEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCcee
Confidence            457889999999998653 2347999974221  10                 000 11112335689999999999999


Q ss_pred             EEEEEEcCC
Q psy17058        343 YKCIGKNSA  351 (471)
Q Consensus       343 Y~C~a~n~~  351 (471)
                      |.|.+....
T Consensus        89 YyCa~~~~~   97 (113)
T d1nfdb1          89 YFCASSLRW   97 (113)
T ss_dssp             ECEEEESSS
T ss_pred             EEEEeecCC
Confidence            999876543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=9.2e-05  Score=53.36  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=47.4

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc--------------cCcEEEEcCCCCCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI--------------AGETLIINGITKADE  152 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~--------------~~~~L~i~~v~~~D~  152 (471)
                      .+|.+.+.|.......++.++|.|. .+ .| ...|.|+++ +..+.....              ..+.|.|..-.....
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g   81 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHN-EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQK   81 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEET-TEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTG
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEEC-CEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCC
Confidence            4677766655545556788999999 33 34 479999998 544432210              123566655554556


Q ss_pred             eEEEEEEEecCC
Q psy17058        153 GVYICSIQNAQG  164 (471)
Q Consensus       153 G~Y~C~~~~~~~  164 (471)
                      ..|+|.+.+...
T Consensus        82 ~~ytC~V~H~~l   93 (105)
T d1fp5a2          82 DEFICRAVHEAA   93 (105)
T ss_dssp             GGEEEEEECTTS
T ss_pred             CEEEEEEEECCC
Confidence            789999998543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.34  E-value=0.00052  Score=50.81  Aligned_cols=68  Identities=24%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             ccEEecCCCcEEEEEEEeecC--CCeEEEEeC--CccCC------------------C-ccccc--ccCceeEEEEeecC
Q psy17058        282 EYVSVRPGEPLTLECEATGRP--MPTVSWVKY--IAPFD------------------R-NLERD--ELTSRAVYTIASVR  336 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p--~~~i~W~~~--~~~~~------------------~-~~~~~--~~~~~~~l~i~~~~  336 (471)
                      ..+...+|++++|.|.+.|..  ...+.|++.  ++.+.                  . .....  .......|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            345678899999999998753  336899973  22111                  0 00001  12345679999999


Q ss_pred             CCCCeEEEEEEEc
Q psy17058        337 ESDAGQYKCIGKN  349 (471)
Q Consensus       337 ~~d~G~Y~C~a~n  349 (471)
                      .+|+|.|.|-+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0004  Score=50.38  Aligned_cols=64  Identities=22%  Similarity=0.448  Sum_probs=43.0

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++.  ....+.|+|... ..+                   ..+..       +...|+|.++
T Consensus         7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l   86 (120)
T d1pg7x1           7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRL   86 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccccc
Confidence            33556899999999999 433  345688988721 110                   11111       2236999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|++.|.|....
T Consensus        87 ~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          87 TSNDSAVYYCARED  100 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCcceEEEeeecC
Confidence            99999999997643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.32  E-value=0.00049  Score=48.22  Aligned_cols=61  Identities=20%  Similarity=0.448  Sum_probs=38.3

Q ss_pred             CCcEEEEEEEee-cCCC-eEEEEeCCccCCCcccc------c---ccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLER------D---ELTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~------~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +..++|.|.+.| +|.. .++|+++|..+......      .   .....+.|.+.   .++...|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECCC
Confidence            567899999999 4544 89999999877532110      0   11122333333   3344579999998644

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.32  E-value=0.00036  Score=50.44  Aligned_cols=65  Identities=22%  Similarity=0.452  Sum_probs=44.3

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cccc--ccccCceeEEEEeecCCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RNLE--RDELTSRAVYTIASVRESD  339 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~~~--~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  |+.++                  ....  .........|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            367889999999999986544  5788874  22221                  0111  1112334569999999999


Q ss_pred             CeEEEEEEEc
Q psy17058        340 AGQYKCIGKN  349 (471)
Q Consensus       340 ~G~Y~C~a~n  349 (471)
                      ++.|.| |+.
T Consensus        90 tA~YYC-Ar~   98 (120)
T d1dn0b1          90 TAVYYC-ARP   98 (120)
T ss_dssp             CEEEEE-EEC
T ss_pred             ccEEEE-Eee
Confidence            999999 543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.00038  Score=50.20  Aligned_cols=64  Identities=27%  Similarity=0.520  Sum_probs=43.2

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC--------C-----------c--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD--------R-----------N--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~--------~-----------~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  |+.++        .           .  .......+...|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            467889999999999986543  5888864  22221        0           0  00112233457899999999


Q ss_pred             CCeEEEEEE
Q psy17058        339 DAGQYKCIG  347 (471)
Q Consensus       339 d~G~Y~C~a  347 (471)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999943

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.28  E-value=0.00026  Score=51.68  Aligned_cols=69  Identities=25%  Similarity=0.401  Sum_probs=46.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCC-----------------Cc-ccccccCceeEEEEeecCCCCCeE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD-----------------RN-LERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~-----------------~~-~~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      ...+.+|++++|.|.... ....+.|++...  .+.                 .. ...........|.|.+++.+|+|.
T Consensus         7 ~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   85 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ   85 (112)
T ss_dssp             EEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred             EEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence            457789999999999753 335799998422  111                 00 000112345679999999999999


Q ss_pred             EEEEEEcCCC
Q psy17058        343 YKCIGKNSAG  352 (471)
Q Consensus       343 Y~C~a~n~~g  352 (471)
                      |.|.+....+
T Consensus        86 YyCA~~~~~~   95 (112)
T d2cdeb1          86 YLCASSENIG   95 (112)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEecCCC
Confidence            9998875543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.00019  Score=50.00  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=39.8

Q ss_pred             cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058        195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAGK  261 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  261 (471)
                      .+..++|.|.+.+.+|. ..++|.++|..+........      +...+.|.+.   ..+...|+|++.+..-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCC
Confidence            35678999999665665 59999999876432211111      1112334443   35567899999886433

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.27  E-value=0.00042  Score=48.84  Aligned_cols=77  Identities=17%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCCCc--eEEee------eceEEEeccCCCCCeE
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGPDV--EVYQE------LGVLRFNNIATGDEGK  250 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~~~--~~~~~------~~~l~i~~~~~~d~G~  250 (471)
                      +|.+.+.+..  ....++.++|.|.+.+.+| ...++|.+||..+......  .....      .+.|.+   ...+...
T Consensus         3 PP~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~   77 (98)
T d1hdmb1           3 PPSVQVAKTT--PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDT   77 (98)
T ss_dssp             CCEEEEEECC--CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCC
T ss_pred             CCEEEEEcCC--CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCE
Confidence            4555554332  2345788999999965556 4699999998764332111  11111      223443   4456668


Q ss_pred             EEEEEEcCCCc
Q psy17058        251 YTCIAENSAGK  261 (471)
Q Consensus       251 Y~C~~~~~~~~  261 (471)
                      |+|.+.+....
T Consensus        78 ytC~V~H~sl~   88 (98)
T d1hdmb1          78 YTCVVEHIGAP   88 (98)
T ss_dssp             EEEEEECTTSS
T ss_pred             EEEEEEeCCCC
Confidence            99999987543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.26  E-value=0.00034  Score=50.53  Aligned_cols=62  Identities=15%  Similarity=0.387  Sum_probs=42.3

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      .-.+++|+++.|.|. ++.  ....+.|+|... +.+                  ..+..       ....|.|.+++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            346899999999999 443  345688998721 100                  01111       2236999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.00069  Score=48.50  Aligned_cols=61  Identities=15%  Similarity=0.399  Sum_probs=42.0

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC------------------CCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL------------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~------------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.- |+.+                  ..+..       +...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            456899999999999 543  33568899871 1111                  11111       2246999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        151 DEGVYICSIQ  160 (471)
Q Consensus       151 D~G~Y~C~~~  160 (471)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.00056  Score=48.84  Aligned_cols=64  Identities=23%  Similarity=0.463  Sum_probs=43.2

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      ++....+++|+++.|.|. ++.  ....+.|+|.. |+.+                   ..+..       ....|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            345677999999999999 543  33568898861 1100                   01111       223688999


Q ss_pred             CCCCCCeEEEEEEE
Q psy17058        147 ITKADEGVYICSIQ  160 (471)
Q Consensus       147 v~~~D~G~Y~C~~~  160 (471)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.22  E-value=0.00031  Score=50.45  Aligned_cols=64  Identities=16%  Similarity=0.426  Sum_probs=43.3

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCC-------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQ-------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~-------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++.  ....+.|+|.. ++.                   +..+..       ....|.|.++
T Consensus         7 sg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L   86 (117)
T d1iqdb1           7 SGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc
Confidence            34556899999999999 543  33568898861 111                   111111       2236999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|++.|.|....
T Consensus        87 ~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          87 RSDDTAVYYCAVPD  100 (117)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcCcceEEEEeEcC
Confidence            99999999997654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.22  E-value=0.00058  Score=49.29  Aligned_cols=66  Identities=23%  Similarity=0.419  Sum_probs=44.9

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeCC--ccCC------------------Cccc--ccccCceeEEEEeecCCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKYI--APFD------------------RNLE--RDELTSRAVYTIASVRESD  339 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~~--~~~~------------------~~~~--~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+++|+++.|+|.+.|....  .+.|+|.-  +.++                  ....  .........|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            367899999999999986543  57898742  2111                  0111  1122344579999999999


Q ss_pred             CeEEEEEEEc
Q psy17058        340 AGQYKCIGKN  349 (471)
Q Consensus       340 ~G~Y~C~a~n  349 (471)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999996554

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.21  E-value=0.0003  Score=49.73  Aligned_cols=59  Identities=19%  Similarity=0.436  Sum_probs=39.4

Q ss_pred             eecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC------------------CCCCcc-------cCcEEEEcCCCCCCC
Q psy17058        102 SAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ------------------LPPNMI-------AGETLIINGITKADE  152 (471)
Q Consensus       102 ~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~------------------~~~~~~-------~~~~L~i~~v~~~D~  152 (471)
                      .+++|+++.|.|. ++.  ....+.|+|... +.                  +..+..       +...|+|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4788999999999 443  345688998721 11                  111111       234699999999999


Q ss_pred             eEEEEEEE
Q psy17058        153 GVYICSIQ  160 (471)
Q Consensus       153 G~Y~C~~~  160 (471)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00071  Score=48.48  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             CCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC--CceE-----EeeeceEEEeccCCC--CCe
Q psy17058        180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP--DVEV-----YQELGVLRFNNIATG--DEG  249 (471)
Q Consensus       180 ~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~--~~~~-----~~~~~~l~i~~~~~~--d~G  249 (471)
                      +|.+....+........+.++|.|.+.+..|. ..|+|.++++......  ....     +...+.|.|......  ...
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~   84 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDE   84 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCC
Confidence            44444332222233456789999999666765 6999999887633210  0011     111234555554432  234


Q ss_pred             EEEEEEEcCCCceEEEE
Q psy17058        250 KYTCIAENSAGKEVMNA  266 (471)
Q Consensus       250 ~Y~C~~~~~~~~~~~~~  266 (471)
                      .|+|.+.+..+.....+
T Consensus        85 ~ytC~V~H~~~~~~~~v  101 (105)
T d1dn0b2          85 HVVCKVQHPNGNKEKNV  101 (105)
T ss_dssp             EEEEEEECTTCCEEEEE
T ss_pred             EEEEEEEECCCCEEeEE
Confidence            89999998876555443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.21  E-value=0.00042  Score=49.75  Aligned_cols=67  Identities=22%  Similarity=0.483  Sum_probs=45.2

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cccc--ccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNLE--RDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~~--~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  |+.++                   ....  .........|.|++++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            467889999999999986443  5788873  22221                   0000  111234457999999999


Q ss_pred             CCeEEEEEEEcC
Q psy17058        339 DAGQYKCIGKNS  350 (471)
Q Consensus       339 d~G~Y~C~a~n~  350 (471)
                      |++.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999976544

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00065  Score=47.59  Aligned_cols=79  Identities=15%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceEEe-eec---eEEEeccCCCCCeEEEE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEVYQ-ELG---VLRFNNIATGDEGKYTC  253 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~-~~~---~l~i~~~~~~d~G~Y~C  253 (471)
                      +||.+.+...    ...|+.++|.|.+.+.+|. ..++|.+||..+.......... .++   ......+...+...|+|
T Consensus         2 ~PP~V~v~~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC   77 (94)
T d1t7va1           2 DPPSVVVTSH----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSC   77 (94)
T ss_dssp             BCCEEEEEEE----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEE
T ss_pred             cCCEeEEecc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEE
Confidence            3555554321    2357899999999666675 5999999987643221111111 111   12222344556678999


Q ss_pred             EEEcCCCc
Q psy17058        254 IAENSAGK  261 (471)
Q Consensus       254 ~~~~~~~~  261 (471)
                      ++.+..-.
T Consensus        78 ~V~H~sl~   85 (94)
T d1t7va1          78 HVQHSSLA   85 (94)
T ss_dssp             EEEETTCS
T ss_pred             EEEECCCC
Confidence            99886543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.00053  Score=49.85  Aligned_cols=64  Identities=25%  Similarity=0.538  Sum_probs=43.2

Q ss_pred             EecCCCcEEEEEEEeecCC----CeEEEEeC--CccCC------------------Cccc--ccccCceeEEEEeecCCC
Q psy17058        285 SVRPGEPLTLECEATGRPM----PTVSWVKY--IAPFD------------------RNLE--RDELTSRAVYTIASVRES  338 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~----~~i~W~~~--~~~~~------------------~~~~--~~~~~~~~~l~i~~~~~~  338 (471)
                      .+++|++|+|.|.+.|...    ..+.|++.  ++.+.                  ....  .........|.|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            5788999999999987432    35889974  32221                  0000  011234467999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999644

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.19  E-value=0.00044  Score=49.74  Aligned_cols=63  Identities=21%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CC-------------------CCCCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QE-------------------QLPPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~-------------------~~~~~~~-------~~~~L~i~~  146 (471)
                      ++....+++|+++.|.|. ++.  ....+.|+|.. ++                   .+..+..       ....|.|.+
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~   85 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence            455667899999999999 443  34567888761 11                   0111111       223699999


Q ss_pred             CCCCCCeEEEEEE
Q psy17058        147 ITKADEGVYICSI  159 (471)
Q Consensus       147 v~~~D~G~Y~C~~  159 (471)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999964

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.18  E-value=0.00025  Score=52.29  Aligned_cols=69  Identities=12%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             ecCCCcEEEEEEEeec-CC---CeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        286 VRPGEPLTLECEATGR-PM---PTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g~-p~---~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ...+..+.|.|.+.|+ |.   ..++|++++..+.....       .......+.|.|..-.+.....|+|.|.+..-..
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~~  108 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  108 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCCC
Confidence            3568889999999984 53   47899999887653211       1111234566666655556678999999976433

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.00067  Score=48.74  Aligned_cols=63  Identities=24%  Similarity=0.414  Sum_probs=43.2

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++.  ....+.|+|.-. +.+                   ..+..       ....|.|.++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            44567999999999999 543  345789988721 100                   11111       2236999999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.16  E-value=0.00062  Score=48.76  Aligned_cols=61  Identities=16%  Similarity=0.364  Sum_probs=41.9

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCC--------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQ--------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~--------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.....                    +..+..       +...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            456899999999999 543  34578898862110                    011111       224689999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.15  E-value=0.00046  Score=49.87  Aligned_cols=60  Identities=17%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC------------------CCCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ------------------LPPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~------------------~~~~~~-------~~~~L~i~~v~~~  150 (471)
                      .-.+++|+++.|.|. ++.  ....+.|+|... +.                  +..+..       +...|.|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            446899999999999 543  335688998721 11                  111111       2236999999999


Q ss_pred             CCeEEEEEE
Q psy17058        151 DEGVYICSI  159 (471)
Q Consensus       151 D~G~Y~C~~  159 (471)
                      |++.|.|..
T Consensus        89 DtA~YYCAr   97 (120)
T d1dn0b1          89 DTAVYYCAR   97 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cccEEEEEe
Confidence            999999943

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.15  E-value=0.00099  Score=48.18  Aligned_cols=62  Identities=16%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|... +.                   +..+..       ....|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            456889999999999 443  234688988611 00                   011111       223599999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.14  E-value=0.00085  Score=48.36  Aligned_cols=62  Identities=19%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             CceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++.  ....+.|+|... +.                   +..+..       +...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            3556899999999999 443  345688988611 00                   011111       22369999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.14  E-value=0.00071  Score=47.66  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc------------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE------------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~------------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ...++|.|.+.| +|.. .|.|+++++.+.....            .......+.|.|   ..++...|+|.+.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYV---DGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEE---CTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            457899999999 4543 7999999887642110            011112233444   344556899999876443

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.14  E-value=0.00074  Score=48.40  Aligned_cols=62  Identities=21%  Similarity=0.428  Sum_probs=41.5

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C------C-C------------CCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q------L-P------------PNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~------~-~------------~~~~-------~~~~L~i~~v  147 (471)
                      .-...+++|+++.|.|. ++.  ....+.|+|.... .      + .            .+..       ....|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L   86 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence            34556899999999999 443  3356889886211 0      0 0            1111       2236899999


Q ss_pred             CCCCCeEEEEEE
Q psy17058        148 TKADEGVYICSI  159 (471)
Q Consensus       148 ~~~D~G~Y~C~~  159 (471)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (118)
T d1nlbh1          87 KNEDTATYFCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEee
Confidence            999999999953

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.00055  Score=49.69  Aligned_cols=63  Identities=21%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++.  ....+.|+|.. ++.+                   ..+..       ....|.|.++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            34567999999999999 443  34578898872 1111                   01111       2235999999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1j05b_          87 TSEDTAVYYCAPF   99 (121)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCcceEEEeEee
Confidence            9999999999754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.13  E-value=0.0014  Score=47.22  Aligned_cols=62  Identities=18%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CC---------------------CCCCCcc-------cCcEEEEcCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QE---------------------QLPPNMI-------AGETLIINGI  147 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~---------------------~~~~~~~-------~~~~L~i~~v  147 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.. |+                     .+..+..       +...|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            446889999999999 433  44578898861 10                     0011111       2236899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|++.|.|....
T Consensus        89 ~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          89 RAEDTGIYYCTGIY  102 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             cCCCceEEEeeEec
Confidence            99999999996543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.13  E-value=0.00043  Score=49.62  Aligned_cols=61  Identities=16%  Similarity=0.359  Sum_probs=41.9

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~~~  150 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|... +.+                  ..+..       +...|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            456899999999999 433  445788998721 111                  01111       2236999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        151 DEGVYICSIQ  160 (471)
Q Consensus       151 D~G~Y~C~~~  160 (471)
                      |++.|.|...
T Consensus        89 DTAvYYCAr~   98 (116)
T d1a2yb_          89 DTARYYCARE   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999754

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.00074  Score=48.48  Aligned_cols=62  Identities=21%  Similarity=0.444  Sum_probs=41.9

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CCC-------C------------CCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQL-------P------------PNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~~-------~------------~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++..  ...+.|+|... +.+       .            .+..       ....|.|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            44566899999999999 5433  34688988621 100       0            1110       2236999999


Q ss_pred             CCCCCeEEEEEE
Q psy17058        148 TKADEGVYICSI  159 (471)
Q Consensus       148 ~~~D~G~Y~C~~  159 (471)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999954

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.00053  Score=49.25  Aligned_cols=64  Identities=25%  Similarity=0.529  Sum_probs=43.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|....  .+.|++.  |+.++                   ..  ...........|.|++++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            3467899999999999986544  5888863  22211                   00  0111223345788999999


Q ss_pred             CCCeEEEEE
Q psy17058        338 SDAGQYKCI  346 (471)
Q Consensus       338 ~d~G~Y~C~  346 (471)
                      +|++.|.|.
T Consensus        89 eDTAvYYCA   97 (118)
T d2jelh1          89 EDSAIYYCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceeeeEE
Confidence            999999994

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00071  Score=48.20  Aligned_cols=68  Identities=16%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             cCCCcEEEEEEEee-cCCC--eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        287 RPGEPLTLECEATG-RPMP--TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       287 ~~g~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ..++.+.|.|.+.| +|..  .+.|.+++..+....      ........+.|.|....+.....|+|.|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            35788999999999 4553  577888776654211      11123345677788777777779999999975543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00027  Score=50.48  Aligned_cols=74  Identities=18%  Similarity=0.370  Sum_probs=46.9

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc-------------cCcEEEEcCCCCCCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI-------------AGETLIINGITKADE  152 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~-------------~~~~L~i~~v~~~D~  152 (471)
                      ..+|.|.+.+.......++.++|.|. .+ .| ...|.|+++ |..+.....             ..+.|.|..-.....
T Consensus         3 ~~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~-g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1q0xl2           3 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVD-GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERH   81 (102)
T ss_dssp             CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTC
T ss_pred             CCCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEEC-CEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCC
Confidence            35677877665443345678999998 33 33 468999998 544332211             223456655554557


Q ss_pred             eEEEEEEEecC
Q psy17058        153 GVYICSIQNAQ  163 (471)
Q Consensus       153 G~Y~C~~~~~~  163 (471)
                      ..|+|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1q0xl2          82 SSYSCQVTHEG   92 (102)
T ss_dssp             CEEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            78999998854

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.00061  Score=48.63  Aligned_cols=66  Identities=26%  Similarity=0.485  Sum_probs=44.2

Q ss_pred             ccEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecC
Q psy17058        282 EYVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVR  336 (471)
Q Consensus       282 ~~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~  336 (471)
                      ....+++|+++.|+|.+.|+...  .+.|.+.  |+.++                   ...  ..........|.+++++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            34578899999999999986543  5778763  22221                   010  11122344578899999


Q ss_pred             CCCCeEEEEEE
Q psy17058        337 ESDAGQYKCIG  347 (471)
Q Consensus       337 ~~d~G~Y~C~a  347 (471)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (116)
T d1mjuh1          88 SDDSAVYYCAN   98 (116)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEcc
Confidence            99999999953

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.09  E-value=0.00046  Score=49.41  Aligned_cols=65  Identities=26%  Similarity=0.476  Sum_probs=44.0

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|.+.  |+.++                   ...  ......+...|.+++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            468889999999999986533  5888864  22111                   000  1112234456889999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.09  E-value=0.00097  Score=47.81  Aligned_cols=67  Identities=21%  Similarity=0.392  Sum_probs=45.6

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+++|++++|+|.+.|....  .+.|++.  |+.++                  ..  ...........|.|++++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            367889999999999986543  5888874  22221                  00  011123345679999999999


Q ss_pred             CeEEEEEEEcC
Q psy17058        340 AGQYKCIGKNS  350 (471)
Q Consensus       340 ~G~Y~C~a~n~  350 (471)
                      ++.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999965443

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.0011  Score=47.43  Aligned_cols=62  Identities=23%  Similarity=0.424  Sum_probs=42.2

Q ss_pred             CceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CC-------------------CCCCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QE-------------------QLPPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~-------------------~~~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++.  ....+.|+|.- ++                   .+..+..       ....|.|.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            3456889999999999 543  44578898861 10                   0111111       22368999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jnhb1          88 SEDSAVYSCSRG   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00033  Score=50.19  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058        288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK  356 (471)
Q Consensus       288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  356 (471)
                      .+..++|.|.+.+ +|.. .|+|.+++.......      ........+.|.|...... ...|+|.+.+..+....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v   94 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTKV   94 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEEE
Confidence            3677999999998 4543 799987765432110      1111233456777665553 45799999998776543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00023  Score=51.31  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             ecCCCcEEEEEEEee-cCC---CeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058        286 VRPGEPLTLECEATG-RPM---PTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE  354 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~---~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  354 (471)
                      ...++.++|.|.+.| +|.   ..+.|.+++..+.....       .......+.|.|........-.|+|.|.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   94 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCCC
Confidence            456889999999998 454   37889999877653211       1112234456666655555669999999976543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.09  E-value=0.001  Score=48.65  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=44.2

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      ++....+++|+++.|.|. ++.  ....+.|+|... +.+                   ..+..       ....|.|.+
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~   84 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence            445567899999999999 543  345688988621 111                   01111       223689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy17058        147 ITKADEGVYICSIQN  161 (471)
Q Consensus       147 v~~~D~G~Y~C~~~~  161 (471)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          85 LRSDDTAVYYCARDF   99 (130)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCcEEEEEEeec
Confidence            999999999997653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.08  E-value=0.00085  Score=48.21  Aligned_cols=63  Identities=21%  Similarity=0.409  Sum_probs=42.4

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      .-...+++|+++.|.|. ++.  ....+.|+|.-. +.                   +..+..       +...|.|.++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L   86 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence            34567899999999999 443  345688887611 10                   011111       2347899999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.08  E-value=0.00054  Score=48.42  Aligned_cols=62  Identities=15%  Similarity=0.332  Sum_probs=41.9

Q ss_pred             CceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C---------------------CCCCcc-------cCcEEEEcC
Q psy17058         99 RQQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q---------------------LPPNMI-------AGETLIING  146 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~---------------------~~~~~~-------~~~~L~i~~  146 (471)
                      -...+++|+++.|.|. ++.  ....+.|+|.... .                     +..+..       ....|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            3556899999999999 443  3346888886211 0                     011111       224689999


Q ss_pred             CCCCCCeEEEEEEE
Q psy17058        147 ITKADEGVYICSIQ  160 (471)
Q Consensus       147 v~~~D~G~Y~C~~~  160 (471)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999743

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.07  E-value=0.00057  Score=48.97  Aligned_cols=65  Identities=22%  Similarity=0.513  Sum_probs=44.4

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d  339 (471)
                      ..+++|+++.|+|.+.|..-.  .+.|++.  |+.++                  ..  ...........|.|++++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            367889999999999986543  5788874  22221                  00  011123344579999999999


Q ss_pred             CeEEEEEEE
Q psy17058        340 AGQYKCIGK  348 (471)
Q Consensus       340 ~G~Y~C~a~  348 (471)
                      ++.|.|--.
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999644

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.07  E-value=0.00051  Score=49.26  Aligned_cols=66  Identities=23%  Similarity=0.482  Sum_probs=43.6

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|..-.  .+.|+|.  |+.++                   ..  ...........|.+.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            467899999999999985433  5788763  22111                   00  01112234456889999999


Q ss_pred             CCeEEEEEEEcC
Q psy17058        339 DAGQYKCIGKNS  350 (471)
Q Consensus       339 d~G~Y~C~a~n~  350 (471)
                      |++.|.| |+..
T Consensus        90 DtAvYYC-Ar~~  100 (118)
T d1nlbh1          90 DTATYFC-ARFL  100 (118)
T ss_dssp             GCEEEEE-EEEC
T ss_pred             cceEEEE-eeeC
Confidence            9999999 4443

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.07  E-value=0.00054  Score=49.34  Aligned_cols=63  Identities=14%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             CceeecCCCcEEEEee-CCCCC---CeEEEEeCC-CCC------------------CCCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SNDPS---ATIKWSKDN-QEQ------------------LPPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p~---~~v~W~~~~-~~~------------------~~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++...   ..+.|+|.. ++.                  +..+..       +...|.|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            3456899999999999 55432   357898861 110                  011111       22469999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1ncwh1          88 TEDTATYYCAGLL  100 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCceEEEEeEec
Confidence            9999999997543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00074  Score=46.95  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             eeEEcCCeEEEEEEccCCCCCCeEEEEe-CCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058        191 QTFIVGDRADIQCVLEAGEPSPTQTWIR-PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS  258 (471)
Q Consensus       191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  258 (471)
                      +.+.+|+.+.+.|.+  ..|..+++.++ ++..+.........+...-+.|.+++..+.|.|.|.+...
T Consensus        15 V~v~eg~~~vIPC~v--T~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          15 IHMTEGRELVIPCRV--TSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEECTTSCEEECCCB--SCTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCEEEEccC--CCCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            456799999999998  57777776554 4443222222222333556999999999999999999866

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.06  E-value=0.00055  Score=48.34  Aligned_cols=72  Identities=18%  Similarity=0.385  Sum_probs=40.9

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCCCCcc-------cCc---EEEEcCCCCCCCeEEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLPPNMI-------AGE---TLIINGITKADEGVYIC  157 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~~~~~-------~~~---~L~i~~v~~~D~G~Y~C  157 (471)
                      +|.+.+.|.. ....++..+|.|. .+  .+...|+|+++ |..+.....       .++   .+....+...+.+.|+|
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRN-GQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEET-TEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEEC-CEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            4667776543 2344677889999 33  33468999998 555433221       122   22233556778889999


Q ss_pred             EEEecCC
Q psy17058        158 SIQNAQG  164 (471)
Q Consensus       158 ~~~~~~~  164 (471)
                      .+.+..-
T Consensus        82 ~V~H~sl   88 (98)
T d1d5mb1          82 QVEHPSV   88 (98)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9998654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.06  E-value=0.0008  Score=48.62  Aligned_cols=63  Identities=17%  Similarity=0.421  Sum_probs=43.2

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++..  ...+.|+|... +.                   +..+..       +...|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            45667999999999999 5543  34688988621 10                   011111       2236899999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        88 ~~eDtA~YYCAr~  100 (122)
T d1vgeh1          88 RPEDTAVYYCARD  100 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999765

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.06  E-value=0.00058  Score=49.08  Aligned_cols=65  Identities=23%  Similarity=0.464  Sum_probs=44.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|+...  .+.|+|.  |+.++                   ...  ..........|.|.+++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            3478899999999999986544  5888874  22221                   000  011223445799999999


Q ss_pred             CCCeEEEEEE
Q psy17058        338 SDAGQYKCIG  347 (471)
Q Consensus       338 ~d~G~Y~C~a  347 (471)
                      +|++.|.|..
T Consensus        88 eDtAvYYCAr   97 (117)
T d1um5h1          88 EDSAVYYCAR   97 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999954

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00064  Score=48.65  Aligned_cols=63  Identities=30%  Similarity=0.596  Sum_probs=43.8

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Ccc--cccccCceeEEEEeecCCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RNL--ERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~~--~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+++|++++|+|.+.|....  .+.|++.  |+.++                  ...  ..........|.|++++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            67899999999999986543  5888874  33321                  111  111223446799999999999


Q ss_pred             eEEEEEE
Q psy17058        341 GQYKCIG  347 (471)
Q Consensus       341 G~Y~C~a  347 (471)
                      +.|.|-.
T Consensus        91 AvYYCAr   97 (117)
T d1c5db1          91 AIYFCTR   97 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999953

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.04  E-value=0.00068  Score=49.32  Aligned_cols=63  Identities=17%  Similarity=0.434  Sum_probs=42.8

Q ss_pred             cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcC
Q psy17058         97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIING  146 (471)
Q Consensus        97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~  146 (471)
                      ++....+++|+++.|.|. ++.  ....+.|+|.- ++.+                   ..+..       +...|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            445677999999999999 543  33468898861 1111                   01111       223689999


Q ss_pred             CCCCCCeEEEEEE
Q psy17058        147 ITKADEGVYICSI  159 (471)
Q Consensus       147 v~~~D~G~Y~C~~  159 (471)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=48.95  Aligned_cols=61  Identities=8%  Similarity=0.062  Sum_probs=36.7

Q ss_pred             CcEEEEEEEee-cCCC-eEEEEeCCccCCCcccccc--cCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058        290 EPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERDE--LTSRAVYTIASVRESDAGQYKCIGKNSAG  352 (471)
Q Consensus       290 ~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  352 (471)
                      +.++|.|.+.| +|.. .+.|.++|...........  ......+.+...  .....|+|.|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEECCc
Confidence            45689999999 4443 7999999877553221111  112222333333  444479999998643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.02  E-value=0.00084  Score=48.25  Aligned_cols=65  Identities=25%  Similarity=0.495  Sum_probs=43.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|...-  .+.|.|.  |+.++                   ...  ..........|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            3578889999999999985433  5778763  22211                   000  111223445788999999


Q ss_pred             CCCeEEEEEE
Q psy17058        338 SDAGQYKCIG  347 (471)
Q Consensus       338 ~d~G~Y~C~a  347 (471)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1ct8b1          89 EDSAIYYCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999954

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.00073  Score=49.36  Aligned_cols=63  Identities=24%  Similarity=0.490  Sum_probs=42.5

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC--------------------CCCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQE--------------------QLPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~--------------------~~~~~~~-------~~~~L~i~~v  147 (471)
                      +-...+++|+++.|.|. ++.  ....+.|+|....                    .+..+..       +...|.|.++
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            44567899999999999 443  2346888886111                    0111111       2236899999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAR~   99 (125)
T d1rihh1          87 TSEDSAVYYCARE   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEeee
Confidence            9999999999754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.02  E-value=0.00056  Score=48.37  Aligned_cols=65  Identities=25%  Similarity=0.498  Sum_probs=43.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC---------------------Ccc--cccccCceeEEEEeec
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD---------------------RNL--ERDELTSRAVYTIASV  335 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~---------------------~~~--~~~~~~~~~~l~i~~~  335 (471)
                      ...+++|+++.|+|.+.|....  -+.|++.  |+.++                     ...  ..........|.|+++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            3468899999999999985443  5788763  22111                     000  1111234457899999


Q ss_pred             CCCCCeEEEEEE
Q psy17058        336 RESDAGQYKCIG  347 (471)
Q Consensus       336 ~~~d~G~Y~C~a  347 (471)
                      +.+|++.|.|.-
T Consensus        89 ~~eDTAvYYCAr  100 (109)
T d2ck0h1          89 KTEDTGIYYCVR  100 (109)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CHhHCEEEEEEE
Confidence            999999999963

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.001  Score=47.84  Aligned_cols=62  Identities=26%  Similarity=0.493  Sum_probs=41.9

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC------C-------------CCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL------P-------------PNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~------~-------------~~~~-------~~~~L~i~~v  147 (471)
                      +-...+++|+++.|.|. ++.  ....+.|+|.-. +.+      .             .+..       +...|.|.++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL   86 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence            34556889999999999 543  335688988611 100      0             0110       2236999999


Q ss_pred             CCCCCeEEEEEE
Q psy17058        148 TKADEGVYICSI  159 (471)
Q Consensus       148 ~~~D~G~Y~C~~  159 (471)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (119)
T d1eapb1          87 TSEDSAVYFCKR   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEEE
Confidence            999999999964

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.02  E-value=0.0011  Score=48.28  Aligned_cols=63  Identities=24%  Similarity=0.468  Sum_probs=42.6

Q ss_pred             CceeecCCCcEEEEee-CC--CCCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++  .....+.|+|... +.+                   ..+..       ....|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~   87 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence            3456889999999999 44  3445688988611 100                   11111       22368999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        88 ~eDTavYYCAR~~  100 (127)
T d2fx7h1          88 PEDTAVYYCAREG  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecc
Confidence            9999999997654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.02  E-value=0.00062  Score=49.27  Aligned_cols=61  Identities=15%  Similarity=0.293  Sum_probs=41.1

Q ss_pred             ceeecCCCcEEEEee-CCCC----CCeEEEEeCCC-CCCC------------------CCcc-------cCcEEEEcCCC
Q psy17058        100 QQSAPEGSQVTIECK-SNDP----SATIKWSKDNQ-EQLP------------------PNMI-------AGETLIINGIT  148 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~~-~~~~------------------~~~~-------~~~~L~i~~v~  148 (471)
                      ...+++|+++.|.|. ++..    ...+.|+|... +.++                  .+..       +...|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            456899999999999 5432    23578988721 1110                  1111       22369999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYYCAr~  100 (120)
T d1ai1h1          89 NEDTAMYYCSRE  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccceeEEEEEec
Confidence            999999999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.00  E-value=0.0011  Score=47.66  Aligned_cols=69  Identities=28%  Similarity=0.500  Sum_probs=45.9

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|..-.  .+.|+|.  |+.++                   ..  ...........|.|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            468899999999999986543  5778763  22211                   00  01112234456899999999


Q ss_pred             CCeEEEEEEEcCCC
Q psy17058        339 DAGQYKCIGKNSAG  352 (471)
Q Consensus       339 d~G~Y~C~a~n~~g  352 (471)
                      |++.|.|......+
T Consensus        90 DtAvYYCAr~~~~~  103 (118)
T d2fbjh1          90 DTALYYCARLHYYG  103 (118)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             cceEEEeeEecCCC
Confidence            99999997655433

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.00  E-value=0.001  Score=47.80  Aligned_cols=63  Identities=16%  Similarity=0.336  Sum_probs=42.4

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCC-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQ-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.- |+.                   +..+..       +...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            456899999999999 443  33468888761 100                   011111       223699999999


Q ss_pred             CCCeEEEEEEEec
Q psy17058        150 ADEGVYICSIQNA  162 (471)
Q Consensus       150 ~D~G~Y~C~~~~~  162 (471)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999976543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.00  E-value=0.0024  Score=45.71  Aligned_cols=62  Identities=16%  Similarity=0.379  Sum_probs=42.3

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C------------------CCCCcc-------cCcEEEEcCCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q------------------LPPNMI-------AGETLIINGITKA  150 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~------------------~~~~~~-------~~~~L~i~~v~~~  150 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.... .                  +..+..       +...|.|.+++.+
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~e   88 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSE   88 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCC
Confidence            446899999999999 443  4457889987210 0                  111111       2236999999999


Q ss_pred             CCeEEEEEEEe
Q psy17058        151 DEGVYICSIQN  161 (471)
Q Consensus       151 D~G~Y~C~~~~  161 (471)
                      |++.|.|....
T Consensus        89 DtA~YyCAr~~   99 (118)
T d1lo4h1          89 DTAIYYCARGT   99 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEecccC
Confidence            99999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.00  E-value=0.00059  Score=48.68  Aligned_cols=60  Identities=20%  Similarity=0.474  Sum_probs=40.7

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.... .                   +..+..       +...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            456899999999999 443  3456888886211 0                   011111       223599999999


Q ss_pred             CCCeEEEEEE
Q psy17058        150 ADEGVYICSI  159 (471)
Q Consensus       150 ~D~G~Y~C~~  159 (471)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00024  Score=50.84  Aligned_cols=75  Identities=16%  Similarity=0.322  Sum_probs=45.1

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc------------cCcEEEEcCCCCCCCe
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI------------AGETLIINGITKADEG  153 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~------------~~~~L~i~~v~~~D~G  153 (471)
                      +..|.|.+.+....-..++.++|.|. .+ +| ...|+|+++ +........            ..+.|.|..-......
T Consensus         2 P~~P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~   80 (102)
T d1l6xa2           2 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGN   80 (102)
T ss_dssp             CBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET-TEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTC
T ss_pred             CcCCEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEEC-CEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCC
Confidence            34566766544333335778999999 33 33 468999999 443332111            2234555554444456


Q ss_pred             EEEEEEEecCC
Q psy17058        154 VYICSIQNAQG  164 (471)
Q Consensus       154 ~Y~C~~~~~~~  164 (471)
                      .|+|.+.+...
T Consensus        81 ~ytC~V~H~~l   91 (102)
T d1l6xa2          81 VFSCSVMHEAL   91 (102)
T ss_dssp             CEEEEEECTTS
T ss_pred             EEEEEEEeCCC
Confidence            79999998654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.99  E-value=0.001  Score=47.69  Aligned_cols=64  Identities=23%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.++|....  .+.|++.  |+.++                   ..  ...........|.|++++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            467889999999999986544  5788873  22211                   00  01112234457889999999


Q ss_pred             CCeEEEEEE
Q psy17058        339 DAGQYKCIG  347 (471)
Q Consensus       339 d~G~Y~C~a  347 (471)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (117)
T d1jnhb1          90 DSAVYSCSR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.00031  Score=50.31  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             ecCCCcEEEEEEEee-cCC---CeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        286 VRPGEPLTLECEATG-RPM---PTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       286 ~~~g~~v~l~C~~~g-~p~---~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      ...+.+++|.|.+.+ +|.   ..++|.++|..+.....       .......+.|.|....+...-.|+|.|.+..-.
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l~   91 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP   91 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCCC
Confidence            345777899999998 453   37899999887643211       111223445666555555556899999997543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.99  E-value=0.00065  Score=48.81  Aligned_cols=63  Identities=25%  Similarity=0.494  Sum_probs=42.0

Q ss_pred             EEecCCCcEEEEEEEeecCC--CeEEEEeC--CccCC-------------------Cccc--ccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPM--PTVSWVKY--IAPFD-------------------RNLE--RDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~--~~i~W~~~--~~~~~-------------------~~~~--~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|++++|+|.+.|...  -.+.|++.  |+.+.                   ....  .........|.|++++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            46788999999999997533  25788763  22111                   0000  011233457999999999


Q ss_pred             CCeEEEEE
Q psy17058        339 DAGQYKCI  346 (471)
Q Consensus       339 d~G~Y~C~  346 (471)
                      |++.|.|-
T Consensus        90 DtAvYYCA   97 (115)
T d1f3dh1          90 DSAVYYCA   97 (115)
T ss_dssp             GCEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999994

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.98  E-value=0.0013  Score=47.61  Aligned_cols=65  Identities=22%  Similarity=0.487  Sum_probs=43.8

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|++++|+|.+.|....  .+.|++.  |+.+.                   ...  ..........|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            467889999999999975433  5888874  22221                   000  0111233456899999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.98  E-value=0.0011  Score=48.22  Aligned_cols=63  Identities=22%  Similarity=0.438  Sum_probs=42.5

Q ss_pred             CceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++..  ...+.|+|... +.                   +..+..       +...|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            3456899999999999 5443  34678887611 10                   111111       23468999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.97  E-value=0.0012  Score=48.07  Aligned_cols=66  Identities=24%  Similarity=0.448  Sum_probs=45.0

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|+|.  ++.++                   ..  ...........|.+++++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            367899999999999986544  5889874  22221                   00  01112234457889999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (124)
T d1zvya1          89 DTAIYTCGATR   99 (124)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeecc
Confidence            99999997543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.97  E-value=0.0006  Score=49.08  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCc--e-----EEeeeceEEEeccCCCCCeE
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDV--E-----VYQELGVLRFNNIATGDEGK  250 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~--~-----~~~~~~~l~i~~~~~~d~G~  250 (471)
                      .+|.+.+.++....+..+..++|.|.+.+..|. ..++|.++|..+......  .     .+...+.|.+..-..  ...
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~   84 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKE   84 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSC
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCe
Confidence            456666655544445567889999999666665 489999998764332110  0     011123455554433  237


Q ss_pred             EEEEEEcCCCc
Q psy17058        251 YTCIAENSAGK  261 (471)
Q Consensus       251 Y~C~~~~~~~~  261 (471)
                      |+|.+.+....
T Consensus        85 ytC~V~H~s~~   95 (107)
T d1hxmb2          85 HRCIVRHENNK   95 (107)
T ss_dssp             EEEEEEETTSG
T ss_pred             EEEEEEECCCC
Confidence            99999986544

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.96  E-value=0.0015  Score=47.75  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.. |+.+                   ..+..       ....|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            456899999999999 443  34568898861 1100                   11111       234699999999


Q ss_pred             CCCeEEEEEEEecCCc-eeeeeEEEEEe
Q psy17058        150 ADEGVYICSIQNAQGN-VFQDYASIQVD  176 (471)
Q Consensus       150 ~D~G~Y~C~~~~~~~~-~~~~~~~l~v~  176 (471)
                      +|++.|.|......+. .......|+|.
T Consensus        89 eDTAvYYCAr~~~~~~d~WGqGT~VTVs  116 (135)
T d1ieha_          89 EDTAVYYCAKYSGGALDAWGQGTQVTVS  116 (135)
T ss_dssp             SSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred             ccceeeEEEEecCCccceeCCCEEEEEE
Confidence            9999999975432221 12334455554

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.00084  Score=48.63  Aligned_cols=64  Identities=19%  Similarity=0.475  Sum_probs=43.1

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cccc--ccccCceeEEEEeecCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNLE--RDELTSRAVYTIASVRESD  339 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~~--~~~~~~~~~l~i~~~~~~d  339 (471)
                      .+++|++++|+|.+.|....  .+.|++.  |+.+.                   ....  .........|.|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            67889999999999875432  5889874  32221                   0000  0112344569999999999


Q ss_pred             CeEEEEEEE
Q psy17058        340 AGQYKCIGK  348 (471)
Q Consensus       340 ~G~Y~C~a~  348 (471)
                      ++.|.|-..
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.0013  Score=47.18  Aligned_cols=65  Identities=23%  Similarity=0.467  Sum_probs=43.0

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cccc--ccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNLE--RDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~~--~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|+...  -+.|++.  |+.++                   ....  .....+...|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            3467889999999999985433  5778763  22211                   0000  11223445789999999


Q ss_pred             CCCeEEEEEE
Q psy17058        338 SDAGQYKCIG  347 (471)
Q Consensus       338 ~d~G~Y~C~a  347 (471)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (117)
T d1mfah1          89 EDSAVYYCTR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999953

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.95  E-value=0.0011  Score=48.52  Aligned_cols=61  Identities=16%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             ceeecCCCcEEEEee-CCC----CCCeEEEEeCC-CCC------------------CCCCcc-------cCcEEEEcCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND----PSATIKWSKDN-QEQ------------------LPPNMI-------AGETLIINGIT  148 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~----p~~~v~W~~~~-~~~------------------~~~~~~-------~~~~L~i~~v~  148 (471)
                      ...+++|++++|.|. .+.    ....+.|+|.. +..                  +..+..       ....|+|.+++
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~   88 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD   88 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence            346889999999998 432    22356798761 111                  111111       22469999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYyCAr~  100 (126)
T d1etzb1          89 TSDTATYHCARR  100 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceEEEEEe
Confidence            999999999753

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.95  E-value=0.00027  Score=52.84  Aligned_cols=81  Identities=12%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             cCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC-------------CceEEeeeceEEEeccC
Q psy17058        179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP-------------DVEVYQELGVLRFNNIA  244 (471)
Q Consensus       179 ~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~-------------~~~~~~~~~~l~i~~~~  244 (471)
                      .+|.+.+.++....+..+..++|.|.+.+..|. ..|+|+++|+.+....             .-..+...+.|.|..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            356666655443344557889999999665664 5899999887532110             00112224567777666


Q ss_pred             CCCCe-EEEEEEEcCC
Q psy17058        245 TGDEG-KYTCIAENSA  259 (471)
Q Consensus       245 ~~d~G-~Y~C~~~~~~  259 (471)
                      ..+.| .|+|++.+..
T Consensus        83 W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HTCTTCEEEEEEEECC
T ss_pred             hCCCCCEEEEEEEECC
Confidence            55644 7999998753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.0016  Score=45.72  Aligned_cols=58  Identities=22%  Similarity=0.426  Sum_probs=35.8

Q ss_pred             CCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCCCCCCeE
Q psy17058        105 EGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGITKADEGV  154 (471)
Q Consensus       105 ~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~~~D~G~  154 (471)
                      +|+++.|.|. ++.  ....+.|+|... +.                   +..+..       ....|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            5899999999 543  345788998611 11                   111111       22379999999999999


Q ss_pred             EEEEEEec
Q psy17058        155 YICSIQNA  162 (471)
Q Consensus       155 Y~C~~~~~  162 (471)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99976543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.93  E-value=0.00099  Score=47.01  Aligned_cols=70  Identities=19%  Similarity=0.370  Sum_probs=44.8

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCCCCcc-------cC------cEEEEcCCCCCCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQLPPNMI-------AG------ETLIINGITKADE  152 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~~~~~-------~~------~~L~i~~v~~~D~  152 (471)
                      ..+|.+.+.+.. .+..|+..+|.|. .+.  +...|+|.++ |..+.....       .+      +.|.+.   .+|.
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~   77 (99)
T d1uvqa1           3 NEVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSN-GQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSAD   77 (99)
T ss_dssp             CCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEET-TEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTT
T ss_pred             CcCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEEC-CEeccCCcEecceEECCCCCEEEEEEEEEc---CCCC
Confidence            357888876543 3566888999999 433  4468999999 554433211       11      234443   4556


Q ss_pred             eEEEEEEEecC
Q psy17058        153 GVYICSIQNAQ  163 (471)
Q Consensus       153 G~Y~C~~~~~~  163 (471)
                      ..|+|.+.+..
T Consensus        78 ~~ytC~V~H~s   88 (99)
T d1uvqa1          78 EIYDCKVEHWG   88 (99)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEEeCC
Confidence            68999998864

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.92  E-value=0.00078  Score=47.74  Aligned_cols=70  Identities=17%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc-------------cCcEEEEcCCCCCCCe
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI-------------AGETLIINGITKADEG  153 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~-------------~~~~L~i~~v~~~D~G  153 (471)
                      -+|.+.+.|... +..|+.++|.|. .+ +| ...|+|+++ |..+.....             ..+.|.+.   ..+..
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~   78 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRN-GRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDD   78 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEET-TEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTC
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEEC-CeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCC
Confidence            467787765433 556788999999 43 34 468999999 544433211             12344444   34556


Q ss_pred             EEEEEEEecCC
Q psy17058        154 VYICSIQNAQG  164 (471)
Q Consensus       154 ~Y~C~~~~~~~  164 (471)
                      .|+|.+.+..-
T Consensus        79 ~ytC~V~H~sl   89 (101)
T d1fnga1          79 FYDCEVDHWGL   89 (101)
T ss_dssp             CEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999998643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.92  E-value=0.00095  Score=48.54  Aligned_cols=61  Identities=16%  Similarity=0.399  Sum_probs=42.2

Q ss_pred             ceeecCCCcEEEEee-CC--CCCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SN--DPSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++  .....+.|+|... +.+                   ..+..       ....|.|.+++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            446889999999999 43  3455789998721 111                   01110       223689999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (124)
T d1zvya1          88 EDTAIYTCGAT   98 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEeec
Confidence            99999999764

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0014  Score=47.54  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=42.5

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v  147 (471)
                      +-...+++|+++.|.|. .+.  ....+.|+|.-. +.                   +..+..       +...|.|.++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            44567899999999999 443  445688888511 00                   011111       2347899999


Q ss_pred             CCCCCeEEEEEE
Q psy17058        148 TKADEGVYICSI  159 (471)
Q Consensus       148 ~~~D~G~Y~C~~  159 (471)
                      +.+|++.|.|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999964

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0004  Score=49.70  Aligned_cols=70  Identities=11%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             EecCCCcEEEEEEEee-cCC---CeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058        285 SVRPGEPLTLECEATG-RPM---PTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT  353 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g-~p~---~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  353 (471)
                      .+..+..++|.|.+.| +|.   ..+.|++++........       .......+.|.|..-.......|+|+|.+....
T Consensus        12 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~   91 (103)
T d1fp5a1          12 DLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP   91 (103)
T ss_dssp             HHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCS
T ss_pred             HHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            4556888999999998 454   26788888776543211       011123455666555555567999999997543


Q ss_pred             e
Q psy17058        354 E  354 (471)
Q Consensus       354 ~  354 (471)
                      .
T Consensus        92 ~   92 (103)
T d1fp5a1          92 R   92 (103)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.91  E-value=0.00095  Score=48.72  Aligned_cols=66  Identities=21%  Similarity=0.476  Sum_probs=43.7

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|....  .+.|++.  |+.++                   ..  .......+...|.|++++.
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            3467899999999999985433  4777763  22211                   01  0111223445688999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        338 SDAGQYKCIGK  348 (471)
Q Consensus       338 ~d~G~Y~C~a~  348 (471)
                      +|++.|.|-..
T Consensus        89 eDtAvYYCAR~   99 (125)
T d1rihh1          89 EDSAVYYCARE   99 (125)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeee
Confidence            99999999654

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=2.2e-05  Score=56.40  Aligned_cols=81  Identities=12%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             CceeeCCCccEEecCCCcEEEEEEEeec--CC-CeEEEEeCCccCCCccc-----ccccCceeEEEEeecCCCCCeEEEE
Q psy17058        274 PAVTITPSEYVSVRPGEPLTLECEATGR--PM-PTVSWVKYIAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKC  345 (471)
Q Consensus       274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~--p~-~~i~W~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C  345 (471)
                      |.+.+.++....+..+..++|.|.+.|+  |. ..|+|.+++........     .......+.|.|..-.++....|+|
T Consensus         3 P~V~l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC   82 (101)
T d1ow0a1           3 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC   82 (101)
T ss_dssp             CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEE
T ss_pred             CEEEEECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEE
Confidence            4444444333345568899999999985  43 37999988765331111     0111223344444444444569999


Q ss_pred             EEEcCCCce
Q psy17058        346 IGKNSAGTE  354 (471)
Q Consensus       346 ~a~n~~g~~  354 (471)
                      .|.+.....
T Consensus        83 ~V~H~~~~~   91 (101)
T d1ow0a1          83 TAAYPESKT   91 (101)
T ss_dssp             EECCSSCSS
T ss_pred             EEEeCCCCC
Confidence            999875443

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.91  E-value=0.001  Score=47.96  Aligned_cols=65  Identities=23%  Similarity=0.472  Sum_probs=44.0

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC---------------------Cc--ccccccCceeEEEEeecC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD---------------------RN--LERDELTSRAVYTIASVR  336 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~---------------------~~--~~~~~~~~~~~l~i~~~~  336 (471)
                      ..+++|+++.|+|.+.|....  .+.|.+.  |+.++                     ..  ...........|.+++++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            478899999999999986543  4678773  22221                     00  011122345569999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        337 ESDAGQYKCIGK  348 (471)
Q Consensus       337 ~~d~G~Y~C~a~  348 (471)
                      .+|++.|.|-..
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.91  E-value=0.0012  Score=47.45  Aligned_cols=65  Identities=22%  Similarity=0.494  Sum_probs=44.1

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  |+.++                   ..  .......+...|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            467889999999999986543  5888763  22111                   00  01112344557899999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.90  E-value=0.00072  Score=48.79  Aligned_cols=61  Identities=13%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             ceeecCCCcEEEEee-CC--CCCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SN--DPSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++  .....+.|+|... +.+                   ..+..       ....|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            346889999999998 43  3445788988621 100                   00111       223689999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.90  E-value=0.001  Score=48.34  Aligned_cols=64  Identities=23%  Similarity=0.531  Sum_probs=43.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|+...  -+.|++.  |+.++                   ...  ......+...|.+.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            3478899999999999985443  4788763  22221                   000  111123345688999999


Q ss_pred             CCCeEEEEE
Q psy17058        338 SDAGQYKCI  346 (471)
Q Consensus       338 ~d~G~Y~C~  346 (471)
                      +|++.|.|.
T Consensus        89 eDtAvYYCA   97 (127)
T d1n0xh1          89 ADTAVYYCA   97 (127)
T ss_dssp             GGCEEEEEE
T ss_pred             CCceEEEEE
Confidence            999999995

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00023  Score=50.94  Aligned_cols=74  Identities=16%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             CCCCcEEEcCCceeecCCCcEEEEee-CC-C-CCCeEEEEeCCCCCCCCCcc-------c------CcEEEEcCCCCCCC
Q psy17058         89 PQANEVQVTPRQQSAPEGSQVTIECK-SN-D-PSATIKWSKDNQEQLPPNMI-------A------GETLIINGITKADE  152 (471)
Q Consensus        89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~-p~~~v~W~~~~~~~~~~~~~-------~------~~~L~i~~v~~~D~  152 (471)
                      ..+|.+.+.|....-..++.++|.|. .+ . ....|.|+++ |..+.....       .      .+.|.|........
T Consensus         3 ~~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1rzfl2           3 KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD-SSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH   81 (102)
T ss_dssp             CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHS
T ss_pred             CCCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEEC-CEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCC
Confidence            45788887665444445778999999 43 2 3458999998 555543221       1      23455544443345


Q ss_pred             eEEEEEEEecC
Q psy17058        153 GVYICSIQNAQ  163 (471)
Q Consensus       153 G~Y~C~~~~~~  163 (471)
                      ..|+|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1rzfl2          82 RSYSCQVTHEG   92 (102)
T ss_dssp             SCEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            67999998853

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.90  E-value=0.00083  Score=47.87  Aligned_cols=63  Identities=32%  Similarity=0.617  Sum_probs=42.5

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|++.  |+.++                   ..  ...........|.|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            367899999999999986433  5788873  22111                   00  01112234456999999999


Q ss_pred             CCeEEEEE
Q psy17058        339 DAGQYKCI  346 (471)
Q Consensus       339 d~G~Y~C~  346 (471)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (114)
T d1indh1          90 DTALYFCA   97 (114)
T ss_dssp             GCEEEEEE
T ss_pred             cccEEEEC
Confidence            99999995

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00052  Score=49.44  Aligned_cols=75  Identities=17%  Similarity=0.349  Sum_probs=45.6

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc--------c------CcEEEEcCCCCCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI--------A------GETLIINGITKADE  152 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~--------~------~~~L~i~~v~~~D~  152 (471)
                      .+|.+.+.|.......+..++|.|. .+ .| ...|.|.++ |..+.....        .      .+.|.|..-.....
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g   82 (107)
T d1mjul2           4 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH   82 (107)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEEC-CEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCC
Confidence            4577777654433335678999999 33 33 368999998 544432211        1      12455554444446


Q ss_pred             eEEEEEEEecCCc
Q psy17058        153 GVYICSIQNAQGN  165 (471)
Q Consensus       153 G~Y~C~~~~~~~~  165 (471)
                      ..|+|.+.+....
T Consensus        83 ~~ytC~V~H~~~~   95 (107)
T d1mjul2          83 NSYTCEATHKTST   95 (107)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEECCCC
Confidence            6899999986543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.89  E-value=0.0023  Score=45.39  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=41.9

Q ss_pred             EcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCceEE-eee------ceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058        194 IVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVEVY-QEL------GVLRFNNIATGDEGKYTCIAENSAGKEV  263 (471)
Q Consensus       194 ~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~~-~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  263 (471)
                      ..|+..+|.|.+.+-+|. ..+.|.+||..+......... ..+      +.|.|   ..++...|+|.+.+..-...
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTTEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCCCC
Confidence            468888999999666665 699999998764322111111 112      23443   34556679999998754443

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.87  E-value=0.0014  Score=47.54  Aligned_cols=61  Identities=15%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             ceeecCCCcEEEEee-CCC----CCCeEEEEeCC-CCCC------------------CCCcc-------cCcEEEEcCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND----PSATIKWSKDN-QEQL------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~----p~~~v~W~~~~-~~~~------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      ...+++|++++|.|. .+.    ....+.|+|.. ++.+                  ..+..       ....|+|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            456889999999998 432    22357899861 1111                  01110       22359999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.87  E-value=0.0015  Score=47.57  Aligned_cols=61  Identities=18%  Similarity=0.415  Sum_probs=41.2

Q ss_pred             ceeecCCCcEEEEee-CC--CCCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SN--DPSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++  .....+.|+|.. ++.+                   ..+..       ....|+|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            346889999999999 43  344578999872 1111                   01111       223599999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.0012  Score=47.90  Aligned_cols=64  Identities=23%  Similarity=0.472  Sum_probs=43.1

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+..-  .+.|++.  |+.++                   ...  ......+...|.+.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            467889999999999986543  4778763  22211                   110  1112234467889999999


Q ss_pred             CCeEEEEEE
Q psy17058        339 DAGQYKCIG  347 (471)
Q Consensus       339 d~G~Y~C~a  347 (471)
                      |++.|.|..
T Consensus        90 DTA~YYCAR   98 (124)
T d2b1hh1          90 DTALYYCAR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999943

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.86  E-value=0.00092  Score=48.35  Aligned_cols=64  Identities=20%  Similarity=0.485  Sum_probs=43.2

Q ss_pred             EecCCCcEEEEEEEeecCC--C--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        285 SVRPGEPLTLECEATGRPM--P--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~--~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      .+++|++++|+|.+.|...  .  .+.|+|.  |+.++                  ..  ...........|.|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            6788999999999998643  2  4779874  22221                  00  01112234467999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        91 DtAvYYCAr~  100 (120)
T d1ai1h1          91 DTAMYYCSRE  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEec
Confidence            9999999643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.86  E-value=0.0023  Score=46.37  Aligned_cols=68  Identities=13%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             cEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCC-------Cc---------cc-ccccCceeEEEEeecCCCCCeEE
Q psy17058        283 YVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFD-------RN---------LE-RDELTSRAVYTIASVRESDAGQY  343 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~-------~~---------~~-~~~~~~~~~l~i~~~~~~d~G~Y  343 (471)
                      ...+.+|++++|.|...+.....+.|++.  |+.+.       ..         .. .........|.|..+..+|++.|
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEE
T ss_pred             eEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccE
Confidence            45778999999999987654557999985  22211       00         00 00112235688999999999999


Q ss_pred             EEEEEcC
Q psy17058        344 KCIGKNS  350 (471)
Q Consensus       344 ~C~a~n~  350 (471)
                      .|.+...
T Consensus        90 ~Ca~~~~   96 (112)
T d1fo0b_          90 YCTCSAD   96 (112)
T ss_dssp             EEEEESS
T ss_pred             EEEEecC
Confidence            9987543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.86  E-value=0.0021  Score=46.51  Aligned_cols=66  Identities=24%  Similarity=0.428  Sum_probs=44.1

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------C------------ccc--ccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------R------------NLE--RDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------~------------~~~--~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|++++|.|.+.|....  .+.|++.  |+.+.       .            ...  .....+...|.|++++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            3468899999999999875432  5888874  32221       0            000  01123345689999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        338 SDAGQYKCIGK  348 (471)
Q Consensus       338 ~d~G~Y~C~a~  348 (471)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            99999999654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.86  E-value=0.0013  Score=47.47  Aligned_cols=64  Identities=22%  Similarity=0.432  Sum_probs=43.1

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|.+.  |+.++                   ...  ......+...|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            367899999999999985433  5788874  22221                   000  1111234456889999999


Q ss_pred             CCeEEEEEE
Q psy17058        339 DAGQYKCIG  347 (471)
Q Consensus       339 d~G~Y~C~a  347 (471)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (121)
T d2p49b1          90 DTATYYCAA   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEeeec
Confidence            999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.86  E-value=0.00042  Score=48.96  Aligned_cols=63  Identities=24%  Similarity=0.482  Sum_probs=40.6

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+++|+++.|+|.+.|....  .+.|++.  |+.++                  ..  ...........|.|++++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            36789999999999875332  5788874  22221                  01  0111223445799999999999


Q ss_pred             eEEEEEE
Q psy17058        341 GQYKCIG  347 (471)
Q Consensus       341 G~Y~C~a  347 (471)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999954

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00066  Score=48.27  Aligned_cols=73  Identities=15%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc------------cCcEEEEcCCCCCCCeE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI------------AGETLIINGITKADEGV  154 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~------------~~~~L~i~~v~~~D~G~  154 (471)
                      .+|.+.+.+........+.++|.|. .+ +| ...|+|+++ +........            ..+.|.|..-.......
T Consensus         2 ~~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   80 (101)
T d1cqka_           2 AAPQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWN-GQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT   80 (101)
T ss_dssp             BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEET-TEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEEC-CEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCE
Confidence            4566766544433345678999999 43 33 468999998 544332111            22345554444345677


Q ss_pred             EEEEEEecC
Q psy17058        155 YICSIQNAQ  163 (471)
Q Consensus       155 Y~C~~~~~~  163 (471)
                      |+|.+.+..
T Consensus        81 ytC~V~H~~   89 (101)
T d1cqka_          81 FTCSVLHEG   89 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998864

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.86  E-value=0.0013  Score=47.95  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             ceeecCCCcEEEEee-CCCC---CCeEEEEeCC-CC------------------CCCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SNDP---SATIKWSKDN-QE------------------QLPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~p---~~~v~W~~~~-~~------------------~~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. .+..   ...+.|+|.. |+                  .+..+..       +...|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            346889999999999 4432   2468898861 10                  0111111       234799999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDtAvYyCAr~   99 (127)
T d3cx5j1          89 EDTATYYCARS   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.86  E-value=0.0015  Score=47.82  Aligned_cols=66  Identities=23%  Similarity=0.486  Sum_probs=44.4

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|++.  |+.++                   ...  ..........|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            367899999999999986543  5888863  22221                   000  0111234457899999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999996543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.85  E-value=0.00062  Score=48.91  Aligned_cols=61  Identities=16%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             eeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCCC------------------CCcc-------cCcEEEEcCCCCCC
Q psy17058        101 QSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQLP------------------PNMI-------AGETLIINGITKAD  151 (471)
Q Consensus       101 ~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~~------------------~~~~-------~~~~L~i~~v~~~D  151 (471)
                      ..+++|+++.|+|. ++.  ....+.|+|.. ++.++                  .+..       +...|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            45889999999999 543  34578899861 11110                  1111       22368899999999


Q ss_pred             CeEEEEEEEe
Q psy17058        152 EGVYICSIQN  161 (471)
Q Consensus       152 ~G~Y~C~~~~  161 (471)
                      ++.|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.84  E-value=0.0013  Score=46.22  Aligned_cols=65  Identities=26%  Similarity=0.464  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCCCCeE
Q psy17058        288 PGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRESDAGQ  342 (471)
Q Consensus       288 ~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~d~G~  342 (471)
                      +|++++|+|.+.|....  -+.|+|.  |+.++                   ...  ..........|.|++++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48999999999986543  5888863  22221                   000  01112334579999999999999


Q ss_pred             EEEEEEcCCC
Q psy17058        343 YKCIGKNSAG  352 (471)
Q Consensus       343 Y~C~a~n~~g  352 (471)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9997654443

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.84  E-value=0.0013  Score=47.83  Aligned_cols=66  Identities=29%  Similarity=0.553  Sum_probs=44.1

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  -+.|.+.  |+.++                   ..  ...........|.|++++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            467889999999999985433  4788763  22221                   00  01112234467899999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999996543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.84  E-value=0.0013  Score=47.76  Aligned_cols=62  Identities=18%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      .-.+++|+++.|.|. ++.  ....+.|+|... +.+                   ..+..       ....|+|.+++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            346889999999998 432  345688988621 110                   11111       224689999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.83  E-value=0.0013  Score=47.16  Aligned_cols=64  Identities=30%  Similarity=0.583  Sum_probs=43.8

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+++|+++.|+|.+.|+...  .+.|++.  |+.++                  ..  ...........|.|.+++.+|+
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            67889999999999986543  5788874  22211                  00  1111223445789999999999


Q ss_pred             eEEEEEEE
Q psy17058        341 GQYKCIGK  348 (471)
Q Consensus       341 G~Y~C~a~  348 (471)
                      +.|.|...
T Consensus        91 A~YyCAr~   98 (118)
T d1lo4h1          91 AIYYCARG   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeccc
Confidence            99999644

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.82  E-value=0.002  Score=46.66  Aligned_cols=63  Identities=16%  Similarity=0.353  Sum_probs=42.3

Q ss_pred             CCceeecCCCcEEEEee-CCCC--CCeEEEEeCCC-C-------------------CCCCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SNDP--SATIKWSKDNQ-E-------------------QLPPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~~-~-------------------~~~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++..  ...+.|+|... +                   .+..+..       +...|.|.++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            44567899999999999 5433  34578888511 0                   0111111       2247899999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        87 ~~eDTA~YYCAR~   99 (124)
T d2b1hh1          87 KPSDTALYYCARL   99 (124)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEEeec
Confidence            9999999999543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.81  E-value=0.0011  Score=48.22  Aligned_cols=64  Identities=23%  Similarity=0.557  Sum_probs=42.3

Q ss_pred             EecCCCcEEEEEEEeecCCC----eEEEEeC--CccCC------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP----TVSWVKY--IAPFD------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~----~i~W~~~--~~~~~------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      .+++|++++|+|.+.|..-.    -+.|++.  ++.++                  ...  ..........|.|++++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            67889999999999875322    4679863  22221                  000  0011223456999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999643

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.0022  Score=46.65  Aligned_cols=66  Identities=23%  Similarity=0.510  Sum_probs=44.7

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  ++.++                   ..  .......+...|.+.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            467899999999999986544  4778763  22221                   01  01112234567889999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (128)
T d2nxyd1          90 DTAVYFCAGVY  100 (128)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEEe
Confidence            99999997654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.81  E-value=0.00098  Score=48.22  Aligned_cols=61  Identities=18%  Similarity=0.359  Sum_probs=41.1

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.. |..+                   ..+..       +...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            345889999999999 443  23468898762 1111                   01111       223699999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.81  E-value=0.0016  Score=47.27  Aligned_cols=65  Identities=23%  Similarity=0.464  Sum_probs=44.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|....  .+.|.+.  |+.++                   ..  ...........|.+.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            3467889999999999986544  5788763  22211                   00  1111233456788999999


Q ss_pred             CCCeEEEEEE
Q psy17058        338 SDAGQYKCIG  347 (471)
Q Consensus       338 ~d~G~Y~C~a  347 (471)
                      +|++.|.|..
T Consensus        88 eDTAvYYCAr   97 (126)
T d1lmka1          88 EDSAVYYCAR   97 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0012  Score=47.45  Aligned_cols=65  Identities=29%  Similarity=0.568  Sum_probs=43.5

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESDA  340 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d~  340 (471)
                      .+++|+++.|+|.+.|....  .+.|++.  |+.++                  ..  .......+...|.+++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            57789999999999985543  5888873  33321                  00  0111123345688999999999


Q ss_pred             eEEEEEEEc
Q psy17058        341 GQYKCIGKN  349 (471)
Q Consensus       341 G~Y~C~a~n  349 (471)
                      +.|.|....
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.80  E-value=0.00085  Score=49.07  Aligned_cols=63  Identities=19%  Similarity=0.445  Sum_probs=42.4

Q ss_pred             CCceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCC
Q psy17058         98 PRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus        98 p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v  147 (471)
                      +....+++|+++.|.|. ++.  ....+.|++... +.+                   ..+..       ....|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL   86 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL   86 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence            44556899999999999 443  335689988621 111                   01110       1235889999


Q ss_pred             CCCCCeEEEEEEE
Q psy17058        148 TKADEGVYICSIQ  160 (471)
Q Consensus       148 ~~~D~G~Y~C~~~  160 (471)
                      +.+|++.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999753

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.001  Score=47.92  Aligned_cols=62  Identities=16%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             CceeecCCCcEEEEee-CCCC--CCeEEEEeCC-CCC---------------------CCCCcc-------cCcEEEEcC
Q psy17058         99 RQQSAPEGSQVTIECK-SNDP--SATIKWSKDN-QEQ---------------------LPPNMI-------AGETLIING  146 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~p--~~~v~W~~~~-~~~---------------------~~~~~~-------~~~~L~i~~  146 (471)
                      -...+++|+++.|.|. ++..  ...+.|+|.. ++.                     +..+..       +...|.|.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            4567999999999999 5432  3457888851 110                     000111       223599999


Q ss_pred             CCCCCCeEEEEEEE
Q psy17058        147 ITKADEGVYICSIQ  160 (471)
Q Consensus       147 v~~~D~G~Y~C~~~  160 (471)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00072  Score=48.36  Aligned_cols=66  Identities=12%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             cCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCCce-E------EeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058        195 VGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVE-V------YQELGVLRFNNIATGDEGKYTCIAENSAG  260 (471)
Q Consensus       195 ~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  260 (471)
                      .+..++|.|.+.+..|.. .++|+++|..+....... .      +...+.|.|..-.......|+|++.+...
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            456799999996656664 899999987744321111 1      11133466666554556789999998753

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.78  E-value=0.0016  Score=47.08  Aligned_cols=65  Identities=26%  Similarity=0.494  Sum_probs=43.5

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  -+.|+|.  |+.++                   ...  ..........|.|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            367889999999999985433  4788763  22221                   000  1111234457999999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999644

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.78  E-value=0.00092  Score=48.35  Aligned_cols=66  Identities=27%  Similarity=0.576  Sum_probs=43.6

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|..-.  .+.|+|.  |+.++                   ...  ..........|.|++++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            367899999999999985433  4778763  22111                   000  0111233456899999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999996544

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.78  E-value=0.0016  Score=46.71  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=42.1

Q ss_pred             CceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++.  ....+.|+|... +.+                   ..+..       +...|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            3556999999999999 443  335688888611 111                   01110       23468999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.78  E-value=0.0012  Score=46.44  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=41.1

Q ss_pred             CeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC--ceEEeeece---EEEeccCCCCCeEEEEE
Q psy17058        181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD--VEVYQELGV---LRFNNIATGDEGKYTCI  254 (471)
Q Consensus       181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~--~~~~~~~~~---l~i~~~~~~d~G~Y~C~  254 (471)
                      |.+.+.+...  ...++..+|.|.+.+.+|. ..++|.++|..+..+..  ......+++   .....+...+...|+|.
T Consensus         3 P~V~v~p~~~--~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           3 PTVTISPSRT--EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CEEEEecCCc--ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            4444443322  2346778999999666664 69999999865332110  011111221   12223456677899999


Q ss_pred             EEcCCC
Q psy17058        255 AENSAG  260 (471)
Q Consensus       255 ~~~~~~  260 (471)
                      +.+..-
T Consensus        81 V~H~sl   86 (97)
T d1uvqb1          81 VEHPSL   86 (97)
T ss_dssp             EECTTC
T ss_pred             EEeCCC
Confidence            988643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.77  E-value=0.0023  Score=46.13  Aligned_cols=66  Identities=23%  Similarity=0.500  Sum_probs=44.3

Q ss_pred             cEEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCC
Q psy17058        283 YVSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       283 ~~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~  337 (471)
                      ...+++|+++.|+|.+.|....  -+.|++.  |+.++                   ..  ...........|.|.+++.
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            3468899999999999986543  5788873  22211                   00  0111123345688999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        338 SDAGQYKCIGK  348 (471)
Q Consensus       338 ~d~G~Y~C~a~  348 (471)
                      +|++.|.|...
T Consensus        90 eDtA~YYCAr~  100 (122)
T d1vgeh1          90 EDTAVYYCARD  100 (122)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.77  E-value=0.002  Score=46.59  Aligned_cols=66  Identities=24%  Similarity=0.483  Sum_probs=43.9

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|...-  .+.|++.  |+.++                   ...  ..........|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            367889999999999986543  4788873  22211                   000  0112234457889999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|...+
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999996543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0013  Score=45.87  Aligned_cols=68  Identities=25%  Similarity=0.462  Sum_probs=40.8

Q ss_pred             CCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCC-cc-------cCc---EEEEcCCCCCCCeEEE
Q psy17058         91 ANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPN-MI-------AGE---TLIINGITKADEGVYI  156 (471)
Q Consensus        91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~-~~-------~~~---~L~i~~v~~~D~G~Y~  156 (471)
                      ||.+.+..    -..++.++|.|. .+ +| ...++|+++ |..+... ..       ..+   ......+...|...|+
T Consensus         4 pP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~d-g~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           4 PPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKD-KQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             CCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEET-TEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEEC-CEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            56666632    234678999999 44 34 469999999 5444321 11       111   1222234456677899


Q ss_pred             EEEEecC
Q psy17058        157 CSIQNAQ  163 (471)
Q Consensus       157 C~~~~~~  163 (471)
                      |.+.+..
T Consensus        79 C~V~H~s   85 (94)
T d1de4a1          79 CQVEHPG   85 (94)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9999864

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.76  E-value=0.0027  Score=45.61  Aligned_cols=65  Identities=23%  Similarity=0.497  Sum_probs=44.2

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|.+.  |+.++                   ..  .......+...|.+++++.+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            468899999999999985543  5788763  22221                   00  01112334567889999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (120)
T d1ad9b1          90 DTAFYFCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEc
Confidence            9999999643

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.76  E-value=0.0012  Score=47.44  Aligned_cols=65  Identities=25%  Similarity=0.532  Sum_probs=43.9

Q ss_pred             EEecCCCcEEEEEEEeecCCC---eEEEEeC--CccCC------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP---TVSWVKY--IAPFD------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~---~i~W~~~--~~~~~------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|..-.   .+.|.|.  |+.++                  ...  ......+...|.+.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            367889999999999986543   3678763  32221                  000  1112234467899999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.76  E-value=0.0016  Score=47.98  Aligned_cols=61  Identities=15%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             ceeecCCCcEEEEee-CCC----CCCeEEEEeCCC-CCC------------------CCCcc-------cCcEEEEcCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND----PSATIKWSKDNQ-EQL------------------PPNMI-------AGETLIINGIT  148 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~----p~~~v~W~~~~~-~~~------------------~~~~~-------~~~~L~i~~v~  148 (471)
                      ...+++|+++.|.|. .+.    ...-+.|+|... +.+                  ..+..       ..-.|+|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            456899999999998 433    234688998621 111                  11111       12359999999


Q ss_pred             CCCCeEEEEEEE
Q psy17058        149 KADEGVYICSIQ  160 (471)
Q Consensus       149 ~~D~G~Y~C~~~  160 (471)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYYCAr~  100 (132)
T d1tjgh1          89 PVDTATYFCAHR  100 (132)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEEEe
Confidence            999999999754

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0011  Score=43.56  Aligned_cols=51  Identities=27%  Similarity=0.574  Sum_probs=36.3

Q ss_pred             cCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEE
Q psy17058        104 PEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICS  158 (471)
Q Consensus       104 ~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~  158 (471)
                      ..|+.+.|.|..... ..|.|.+++...+..   .+.+|+|.-=...|+|+|+|.
T Consensus        19 ~~~~~V~L~C~t~eE-~~I~W~kd~~se~~~---~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          19 APGEMVVLTCDTPEE-DGITWTLDQSSEVLG---SGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCCEEEEEECSSSCC-SSCEEEETTCCCCCE---ESSEEEEEECSGGGCEEEEEE
T ss_pred             CCccEEEEecCCCcc-cccEEeeCCcccccc---CCCEEEEEEEeccCCcceeEe
Confidence            357789999974433 479999994443322   456777765566899999995

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.74  E-value=0.0015  Score=47.30  Aligned_cols=62  Identities=13%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|... +.                   +..+..       ....|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            345889999999999 543  334688988611 00                   011111       224689999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.74  E-value=0.0018  Score=47.45  Aligned_cols=62  Identities=21%  Similarity=0.456  Sum_probs=42.3

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-C---C---------------------CCCcc-------cCcEEEE
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-Q---L---------------------PPNMI-------AGETLII  144 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~---~---------------------~~~~~-------~~~~L~i  144 (471)
                      .-.+++|+++.|.|. ++.  ....+.|+|.... .   +                     ..+..       ....|+|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            446889999999999 543  3457889986211 0   0                     01111       2336999


Q ss_pred             cCCCCCCCeEEEEEEEe
Q psy17058        145 NGITKADEGVYICSIQN  161 (471)
Q Consensus       145 ~~v~~~D~G~Y~C~~~~  161 (471)
                      .+++.+|++.|.|....
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999998653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.00079  Score=47.98  Aligned_cols=74  Identities=16%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc------------cCcEEEEcCCCCCCCeE
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI------------AGETLIINGITKADEGV  154 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~------------~~~~L~i~~v~~~D~G~  154 (471)
                      ..|.|.+.+........+.++|.|. .+ +| ...|.|.++ +........            ..+.|.|..-...+...
T Consensus         3 ~~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~   81 (102)
T d1i1ca2           3 RGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT   81 (102)
T ss_dssp             BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET-TEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEEC-CeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCE
Confidence            4566776644433334578999999 33 33 468999999 444432111            12345555544455667


Q ss_pred             EEEEEEecCC
Q psy17058        155 YICSIQNAQG  164 (471)
Q Consensus       155 Y~C~~~~~~~  164 (471)
                      |+|.+.+...
T Consensus        82 ytC~V~H~~~   91 (102)
T d1i1ca2          82 FTCSVLHEGL   91 (102)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999988643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.73  E-value=0.0021  Score=46.69  Aligned_cols=66  Identities=26%  Similarity=0.526  Sum_probs=44.0

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------C------------c--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------R------------N--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------~------------~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|+...  .+.|++.  |+.++       .            .  .......+...|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            467899999999999986533  5788763  22211       0            0  00112234457889999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        90 DtavYYCAr~~  100 (126)
T d1dfbh1          90 DMALYYCVKGR  100 (126)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEEecc
Confidence            99999996543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0016  Score=44.89  Aligned_cols=44  Identities=23%  Similarity=0.509  Sum_probs=33.3

Q ss_pred             cCCeeEEcCCeeeeeCCCeEEEEEEecccCCc--eEEEecCCCCCCCce
Q psy17058        411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPI--SIRWQPLQGYFPSHV  457 (471)
Q Consensus       411 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~l~~~~  457 (471)
                      .||.+.+..   ....++.+.|.|.+.|+.+.  .|+|.+||+.+..+.
T Consensus         2 ~pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~   47 (89)
T d2mhaa1           2 DSPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDM   47 (89)
T ss_dssp             BCCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTC
T ss_pred             CCCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCE
Confidence            468777644   23456789999999997664  789999999886554

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.72  E-value=0.0024  Score=45.91  Aligned_cols=65  Identities=26%  Similarity=0.595  Sum_probs=43.4

Q ss_pred             EecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC---------------------Cc--ccccccCceeEEEEeecCC
Q psy17058        285 SVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD---------------------RN--LERDELTSRAVYTIASVRE  337 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~---------------------~~--~~~~~~~~~~~l~i~~~~~  337 (471)
                      .+++|+++.|+|.+.|....  .+.|++.  |+.++                     ..  ...........|.|.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            67889999999999986443  5788763  22211                     00  0111123345788999999


Q ss_pred             CCCeEEEEEEEc
Q psy17058        338 SDAGQYKCIGKN  349 (471)
Q Consensus       338 ~d~G~Y~C~a~n  349 (471)
                      +|++.|.|....
T Consensus        91 eDtAvYYCA~~~  102 (120)
T d1dlfh_          91 EDTGIYYCTGIY  102 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CCceEEEeeEec
Confidence            999999996543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.72  E-value=0.002  Score=46.48  Aligned_cols=64  Identities=27%  Similarity=0.524  Sum_probs=43.7

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|..-.  .+.|.+.  |+.++                   ..  .......+...|.+++++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            467889999999999986443  5788773  22221                   00  11112234567889999999


Q ss_pred             CCeEEEEEE
Q psy17058        339 DAGQYKCIG  347 (471)
Q Consensus       339 d~G~Y~C~a  347 (471)
                      |++.|.|..
T Consensus        90 DTAvYYCAR   98 (124)
T d1yedb1          90 DSAVYFCTR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEecc
Confidence            999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.71  E-value=0.002  Score=46.94  Aligned_cols=63  Identities=24%  Similarity=0.511  Sum_probs=43.8

Q ss_pred             EecCCCcEEEEEEEeecCC---CeEEEEeC--CccCC------------------Cc--ccccccCceeEEEEeecCCCC
Q psy17058        285 SVRPGEPLTLECEATGRPM---PTVSWVKY--IAPFD------------------RN--LERDELTSRAVYTIASVRESD  339 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~---~~i~W~~~--~~~~~------------------~~--~~~~~~~~~~~l~i~~~~~~d  339 (471)
                      .+++|+++.|+|.+.|...   -.+.|++.  |+.++                  ..  ...........|.|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            6788999999999998653   25789873  32221                  01  111123445679999999999


Q ss_pred             CeEEEEEE
Q psy17058        340 AGQYKCIG  347 (471)
Q Consensus       340 ~G~Y~C~a  347 (471)
                      ++.|.|..
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.70  E-value=0.0021  Score=47.01  Aligned_cols=66  Identities=24%  Similarity=0.474  Sum_probs=44.7

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC------------------------Ccc--cccccCceeEEEEe
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD------------------------RNL--ERDELTSRAVYTIA  333 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~------------------------~~~--~~~~~~~~~~l~i~  333 (471)
                      ..+++|+++.|+|.+.|....  .+.|++.  |+.++                        ...  ..........|.|+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            367889999999999986433  5889874  22111                        000  01122345678999


Q ss_pred             ecCCCCCeEEEEEEEc
Q psy17058        334 SVRESDAGQYKCIGKN  349 (471)
Q Consensus       334 ~~~~~d~G~Y~C~a~n  349 (471)
                      +++.+|++.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999997653

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.69  E-value=0.0028  Score=46.39  Aligned_cols=63  Identities=21%  Similarity=0.454  Sum_probs=42.3

Q ss_pred             CceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CC-------------------CCCCcc-------cCcEEEEcCCC
Q psy17058         99 RQQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQ-------------------LPPNMI-------AGETLIINGIT  148 (471)
Q Consensus        99 ~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~-------------------~~~~~~-------~~~~L~i~~v~  148 (471)
                      -...+++|+++.|.|. ++.  ....+.|+|.-. +.                   +..+..       ....|.|.+++
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            3456899999999999 543  334688888611 00                   111111       23468999999


Q ss_pred             CCCCeEEEEEEEe
Q psy17058        149 KADEGVYICSIQN  161 (471)
Q Consensus       149 ~~D~G~Y~C~~~~  161 (471)
                      .+|++.|.|....
T Consensus        87 ~eDtA~YYCAr~~   99 (133)
T d1rzfh1          87 SDDTAVYYCASNS   99 (133)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCCCEEEEeeecc
Confidence            9999999996544

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0011  Score=47.61  Aligned_cols=75  Identities=20%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             CCCcEEEcCCceeecCCCcEEEEee-CC-CC-CCeEEEEeCCCCCCCCCcc--------------cCcEEEEcCCCCCCC
Q psy17058         90 QANEVQVTPRQQSAPEGSQVTIECK-SN-DP-SATIKWSKDNQEQLPPNMI--------------AGETLIINGITKADE  152 (471)
Q Consensus        90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~-~p-~~~v~W~~~~~~~~~~~~~--------------~~~~L~i~~v~~~D~  152 (471)
                      .+|.+.+.++......++.++|.|. .+ .| ...|+|.++ +........              ..+.|.|..-.....
T Consensus         4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~   82 (107)
T d1c5cl2           4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVD-NALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH   82 (107)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEEC-CEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCC
Confidence            4677777654433334678999999 33 34 368999998 444332211              123555554443445


Q ss_pred             eEEEEEEEecCCc
Q psy17058        153 GVYICSIQNAQGN  165 (471)
Q Consensus       153 G~Y~C~~~~~~~~  165 (471)
                      ..|+|.+.+....
T Consensus        83 ~~ytC~V~H~~~~   95 (107)
T d1c5cl2          83 KVYACEVTHQGLS   95 (107)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEECCCC
Confidence            5799999986543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.67  E-value=0.0021  Score=46.70  Aligned_cols=61  Identities=16%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCCC-CC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQE-QL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~-~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.... .+                   ..+..       +...|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            456899999999999 543  3346888886211 00                   01111       223689999999


Q ss_pred             CCCeEEEEEEE
Q psy17058        150 ADEGVYICSIQ  160 (471)
Q Consensus       150 ~D~G~Y~C~~~  160 (471)
                      +|++.|.|...
T Consensus        89 eDtavYYCAr~   99 (126)
T d1dfbh1          89 EDMALYYCVKG   99 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEec
Confidence            99999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.67  E-value=0.002  Score=46.99  Aligned_cols=65  Identities=22%  Similarity=0.437  Sum_probs=42.5

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cccc--ccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RNLE--RDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~~~--~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  .+.|++.  |+.++                   ....  .....+...|.|++++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            467899999999999985443  5788874  22221                   0001  111233355899999999


Q ss_pred             CCeEEEEEEE
Q psy17058        339 DAGQYKCIGK  348 (471)
Q Consensus       339 d~G~Y~C~a~  348 (471)
                      |++.|.|...
T Consensus        89 DTAvYYCAr~   98 (126)
T d1rjca1          89 DTAMYYCAAD   98 (126)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCceeEEEee
Confidence            9999999654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.65  E-value=0.0023  Score=47.22  Aligned_cols=65  Identities=25%  Similarity=0.523  Sum_probs=43.6

Q ss_pred             EecCCCcEEEEEEEeecCC----CeEEEEeC--CccCC------------------Ccc--cccccCceeEEEEeecCCC
Q psy17058        285 SVRPGEPLTLECEATGRPM----PTVSWVKY--IAPFD------------------RNL--ERDELTSRAVYTIASVRES  338 (471)
Q Consensus       285 ~~~~g~~v~l~C~~~g~p~----~~i~W~~~--~~~~~------------------~~~--~~~~~~~~~~l~i~~~~~~  338 (471)
                      .+++|++++|+|.+.|...    .-+.|++.  ++.++                  ...  ..........|.|++++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            6788999999999997542    24889874  22221                  000  0011233456999999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|-...
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999996543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.0017  Score=43.57  Aligned_cols=51  Identities=27%  Similarity=0.750  Sum_probs=37.9

Q ss_pred             cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCC-CCCeEEEEEE
Q psy17058        104 PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK-ADEGVYICSI  159 (471)
Q Consensus       104 ~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~  159 (471)
                      ..|.+|+|+|. .+.  ..+.|.++ +..+++.  .+..|.+.+.+. +|+|.|.|..
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn-~~~i~g~--~~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKN-GQELPQK--HDKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEET-TEEECSC--CCSEEEEESCCTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCCCC--CceEEeec-cccCCCC--CCcEEEEccccccccCcceEEec
Confidence            35899999998 432  46999998 6555543  244788888766 7999999964

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.65  E-value=0.0016  Score=47.44  Aligned_cols=62  Identities=19%  Similarity=0.410  Sum_probs=41.6

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCCC-CCC-------------------CCCcc-------cCcEEEEcCCCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDNQ-EQL-------------------PPNMI-------AGETLIINGITK  149 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~-~~~-------------------~~~~~-------~~~~L~i~~v~~  149 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|... +.+                   ..+..       +...|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            446889999999999 443  334688888621 000                   01111       224689999999


Q ss_pred             CCCeEEEEEEEe
Q psy17058        150 ADEGVYICSIQN  161 (471)
Q Consensus       150 ~D~G~Y~C~~~~  161 (471)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (127)
T d2fb4h1          89 EDTGVYFCARDG  100 (127)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cceeEEEEEEec
Confidence            999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.63  E-value=0.0018  Score=46.79  Aligned_cols=62  Identities=16%  Similarity=0.331  Sum_probs=41.7

Q ss_pred             ceeecCCCcEEEEee-CCC--CCCeEEEEeCC-CCCC---------------------CCCcc-------cCcEEEEcCC
Q psy17058        100 QQSAPEGSQVTIECK-SND--PSATIKWSKDN-QEQL---------------------PPNMI-------AGETLIINGI  147 (471)
Q Consensus       100 ~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~-~~~~---------------------~~~~~-------~~~~L~i~~v  147 (471)
                      ...+++|+++.|.|. ++.  ....+.|+|.. ++.+                     ..+..       +...|+|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            456899999999999 443  33468898761 1111                     01111       2236899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy17058        148 TKADEGVYICSIQN  161 (471)
Q Consensus       148 ~~~D~G~Y~C~~~~  161 (471)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCar~~  102 (122)
T d1q9rb1          89 RAEDSATYYCARDH  102 (122)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccCcceEEEEEecC
Confidence            99999999997643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.63  E-value=0.003  Score=46.11  Aligned_cols=66  Identities=23%  Similarity=0.492  Sum_probs=44.2

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC-------------------Cc--ccccccCceeEEEEeecCCC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD-------------------RN--LERDELTSRAVYTIASVRES  338 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~-------------------~~--~~~~~~~~~~~l~i~~~~~~  338 (471)
                      ..+++|+++.|+|.+.|....  -+.|+|.  |+.++                   ..  .......+...|.+++++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            467899999999999985433  5788863  22221                   01  01112233456889999999


Q ss_pred             CCeEEEEEEEc
Q psy17058        339 DAGQYKCIGKN  349 (471)
Q Consensus       339 d~G~Y~C~a~n  349 (471)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999996543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.63  E-value=0.0022  Score=46.28  Aligned_cols=66  Identities=24%  Similarity=0.478  Sum_probs=44.5

Q ss_pred             EEecCCCcEEEEEEEeecCCC--eEEEEeC--CccCC---------------------Ccc--cccccCceeEEEEeecC
Q psy17058        284 VSVRPGEPLTLECEATGRPMP--TVSWVKY--IAPFD---------------------RNL--ERDELTSRAVYTIASVR  336 (471)
Q Consensus       284 ~~~~~g~~v~l~C~~~g~p~~--~i~W~~~--~~~~~---------------------~~~--~~~~~~~~~~l~i~~~~  336 (471)
                      ..+++|+++.|+|.+.|....  .+.|++.  |+.++                     ...  ..........|.+.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            367889999999999986543  5888863  33221                     000  01112334568899999


Q ss_pred             CCCCeEEEEEEEc
Q psy17058        337 ESDAGQYKCIGKN  349 (471)
Q Consensus       337 ~~d~G~Y~C~a~n  349 (471)
                      .+|++.|.|....
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999997543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.002  Score=42.66  Aligned_cols=56  Identities=18%  Similarity=0.514  Sum_probs=39.9

Q ss_pred             cCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCc------ccCcEEEEcCCCC-CCCeEEEEEEEe
Q psy17058        104 PEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM------IAGETLIINGITK-ADEGVYICSIQN  161 (471)
Q Consensus       104 ~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~------~~~~~L~i~~v~~-~D~G~Y~C~~~~  161 (471)
                      ..|.+|+|+|... ....+.|.++ +..+....      .....|.+.+... +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~~-~~~~i~W~~n-~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQY-PGSEILWQHN-DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSSC-TTSCEEEEET-TEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCCC-CCCceeeeec-cccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            3589999999832 3356999998 43333211      1456899999877 799999998854