Psyllid ID: psy17060

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEccccHHHHcccccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHcccccEEEEEccccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEHHHHHHcccccccHHHHHHHHHcccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccHEEccccHHHHHHHHHHcccc
MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvldDQAKIRRKFVGAILNSRTIrcvcswsrgnpmvSCVFWmikptgrgetqwspvAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYReekgeqnreATSVAEWLsheactpevpgsipggvEVFSASGVRNALSLVKIIE
MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVgailnsrtircvcswsrgnPMVSCVFWMIKPtgrgetqwspVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRyreekgeqnrEATSVAEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
**LLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAG******************EWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVK***
*SLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADP**********************************************EACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRR***************AEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
*SLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGAD*********************EAGRRYREEKGEQNREATSVAEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHEACTPEVPGSIPGGVEVFSASGVRNALSLVKIIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q13459 2157 Unconventional myosin-IXb yes N/A 0.846 0.091 0.417 3e-40
B2RTY4 2548 Unconventional myosin-IXa no N/A 0.739 0.067 0.462 4e-40
Q9QY06 2114 Unconventional myosin-IXb yes N/A 0.841 0.093 0.415 5e-40
Q9Z1N3 2626 Unconventional myosin-IXa yes N/A 0.764 0.068 0.453 6e-40
Q8C170 2542 Unconventional myosin-IXa no N/A 0.764 0.070 0.453 7e-40
Q63358 1980 Unconventional myosin-IXb no N/A 0.820 0.096 0.416 7e-40
Q13402 2215 Unconventional myosin-VII no N/A 0.589 0.062 0.333 8e-20
P97479 2215 Unconventional myosin-VII no N/A 0.589 0.062 0.320 4e-19
Q9QZZ4 3511 Unconventional myosin-XV no N/A 0.594 0.039 0.374 2e-18
Q9U1M8 2357 Myosin-I heavy chain OS=D yes N/A 0.286 0.028 0.552 3e-18
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 120/206 (58%), Gaps = 8/206 (3%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I ++DN  C+ L+  KP GL  
Sbjct: 532 FEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGYTDNVGCIHLISKKPTGLFY 591

Query: 65  VLDDQAKIRRKFVGAILNS-RTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMR 123
           +LD+++         +L   +       +  G P++   F +    G+ + Q   + + R
Sbjct: 592 LLDEESNFPHATSQTLLAKFKQQHEDNKYFLGTPVMEPAFIIQHFAGKVKYQ---IKDFR 648

Query: 124 EKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGR----R 179
           EKN+D MR +IV +L+ S  ++VREL+G DPVAVFRWA++RA  R +   +EAGR    R
Sbjct: 649 EKNMDYMRPDIVALLRGSDSSYVRELIGMDPVAVFRWAVLRAAIRAMAVLREAGRLRAER 708

Query: 180 YREEKGEQNREATSVAEWLSHEACTP 205
             +  G  +  A S  E L   A TP
Sbjct: 709 AEKAAGMSSPGAQSHPEELPRGASTP 734
Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.
Homo sapiens (taxid: 9606)
>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2 Back     alignment and function description
>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2 Back     alignment and function description
>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1 Back     alignment and function description
>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2 Back     alignment and function description
>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1 Back     alignment and function description
>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2 Back     alignment and function description
>sp|P97479|MYO7A_MOUSE Unconventional myosin-VIIa OS=Mus musculus GN=Myo7a PE=1 SV=2 Back     alignment and function description
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2 Back     alignment and function description
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
270002356 2021 hypothetical protein TcasGA2_TC001372 [T 0.756 0.087 0.623 2e-59
328701267 1776 PREDICTED: myosin-IXb isoform 4 [Acyrtho 0.730 0.096 0.652 2e-58
328701263 1931 PREDICTED: myosin-IXb isoform 2 [Acyrtho 0.730 0.088 0.652 2e-58
328701265 1863 PREDICTED: myosin-IXb isoform 3 [Acyrtho 0.730 0.091 0.652 3e-58
328701269 1847 PREDICTED: myosin-IXb isoform 1 [Acyrtho 0.730 0.092 0.652 3e-58
242011074 783 myosin IIIB, putative [Pediculus humanus 0.777 0.232 0.622 5e-58
357623270 1062 hypothetical protein KGM_18974 [Danaus p 0.722 0.159 0.639 8e-55
170045850 551 myosin IIIB [Culex quinquefasciatus] gi| 0.773 0.328 0.594 6e-54
347971056 2647 AGAP004000-PA [Anopheles gambiae str. PE 0.782 0.069 0.588 7e-54
345485984 2155 PREDICTED: myosin-IXa [Nasonia vitripenn 0.764 0.083 0.587 9e-54
>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 141/191 (73%), Gaps = 14/191 (7%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKPNGLLC
Sbjct: 524 FEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLLC 583

Query: 65  VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVS------CVFWMIKPTGRGETQWSP 118
           +LDDQ      F GA  N   ++   +  + N   +        F ++   G+ + Q   
Sbjct: 584 LLDDQC----NFPGAT-NETLLQKFNTVHKDNKFYNKPQKKEGAFIVVHYAGKVKYQ--- 635

Query: 119 VAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGR 178
           V +MREKNLDLMR +IVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFR  FAF EAGR
Sbjct: 636 VTDMREKNLDLMRQDIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRAYFAFHEAGR 695

Query: 179 RYREEKGEQNR 189
           ++R+ + + N+
Sbjct: 696 KHRQGRVDGNK 706

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242011074|ref|XP_002426282.1| myosin IIIB, putative [Pediculus humanus corporis] gi|212510345|gb|EEB13544.1| myosin IIIB, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus] Back     alignment and taxonomy information
>gi|170045850|ref|XP_001850506.1| myosin IIIB [Culex quinquefasciatus] gi|167868734|gb|EDS32117.1| myosin IIIB [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|347971056|ref|XP_318459.5| AGAP004000-PA [Anopheles gambiae str. PEST] gi|333469610|gb|EAA13585.6| AGAP004000-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|345485984|ref|XP_001605165.2| PREDICTED: myosin-IXa [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
UNIPROTKB|E1BS57 2001 Gga.50857 "Uncharacterized pro 0.752 0.087 0.441 4.5e-36
UNIPROTKB|E1C471 2031 Gga.50857 "Uncharacterized pro 0.752 0.086 0.441 4.6e-36
UNIPROTKB|E1C470 2140 Gga.50857 "Uncharacterized pro 0.752 0.082 0.441 5.3e-36
UNIPROTKB|G3MXH1 1104 Bt.27781 "Uncharacterized prot 0.760 0.161 0.438 6.5e-36
UNIPROTKB|G3MXE8 1951 Bt.27781 "Uncharacterized prot 0.786 0.094 0.430 7.8e-36
UNIPROTKB|J9P187 2560 MYO9A "Uncharacterized protein 0.760 0.069 0.45 8.8e-36
UNIPROTKB|H3BMM1 1301 MYO9A "Unconventional myosin-I 0.739 0.132 0.462 8.8e-36
UNIPROTKB|E2RNI0 2628 MYO9A "Uncharacterized protein 0.760 0.067 0.45 9.1e-36
UNIPROTKB|E1BR51 2628 Gga.54670 "Uncharacterized pro 0.760 0.067 0.455 1.2e-35
UNIPROTKB|H3BRD5 2396 MYO9A "Unconventional myosin-I 0.739 0.072 0.462 2.1e-35
UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 395 (144.1 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
 Identities = 80/181 (44%), Positives = 114/181 (62%)

Query:     5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++DN  C+ L+  KP GL  
Sbjct:   531 FEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTDNVACIHLISKKPTGLFY 590

Query:    65 VLDDQAKIRRKFVGAILNS-RTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMR 123
             +LD+++   R     +L   +       +    P++   F +    G+ + Q   + + R
Sbjct:   591 LLDEESNFPRATNQTLLAKFKQQHEENKFFVATPVMEPAFIIRHFAGKVKYQ---IKDFR 647

Query:   124 EKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYREE 183
             EKN+D MR +IV +L++S  A+VREL+G DPVAVFRWA++RA  + +  F EAGR+ R +
Sbjct:   648 EKNMDYMRPDIVALLRSSDSAYVRELIGMDPVAVFRWAVLRAAVQAMAVFAEAGRQ-RAQ 706

Query:   184 K 184
             K
Sbjct:   707 K 707
GO:0003774 "motor activity" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0016459 "myosin complex" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P187 MYO9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNI0 MYO9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR51 Gga.54670 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H3BRD5 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 4e-62
smart00242677 smart00242, MYSc, Myosin 5e-37
cd00124679 cd00124, MYSc, Myosin motor domain 2e-34
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 2e-28
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 1e-27
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 1e-27
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 9e-27
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 3e-25
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 8e-25
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 6e-24
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 9e-22
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 2e-21
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 2e-21
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 5e-20
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 7e-15
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 0.002
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information 
 Score =  205 bits (523), Expect = 4e-62
 Identities = 80/169 (47%), Positives = 107/169 (63%), Gaps = 4/169 (2%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQLCINYANE LQYYFNQH+F+ EQEEY  EGI W +IE++DN  C+QL   KP GLL 
Sbjct: 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLY 454

Query: 65  VLDDQAKIRRKFVGAILNS-RTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMR 123
           +LD+++         +L           +  G  +    F +    G+ + Q   + + R
Sbjct: 455 LLDEESNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQ---IKDFR 511

Query: 124 EKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFA 172
           EKN+DLMR +IV +LK S  ++VREL+G DPVAVFRWA++RA FR + A
Sbjct: 512 EKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
PTZ00014 821 myosin-A; Provisional 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
KOG0164|consensus 1001 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG0162|consensus 1106 100.0
KOG0161|consensus 1930 100.0
KOG0160|consensus 862 100.0
KOG0163|consensus 1259 100.0
KOG4229|consensus 1062 99.97
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information 
Probab=100.00  E-value=9.5e-58  Score=434.82  Aligned_cols=219  Identities=26%  Similarity=0.362  Sum_probs=190.6

Q ss_pred             CCccchhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhCCCcccccccChHHHHHHhhcCCCchhhhhHHHhhhhccccccc
Q psy17060          1 MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAI   80 (234)
Q Consensus         1 ~~NsfeqlciNy~nE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLdee~~~~~~t~~~~   80 (234)
                      +.||||||||||||||||++|++++|+.|+++|.+|||+|..|+|.||++|+|||+++|.|||+||||||++|+++    
T Consensus       375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~t----  450 (677)
T cd01387         375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQAT----  450 (677)
T ss_pred             CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCc----
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             chhHHHHHhccccCCCCCccccc----cccCCCCCcceeecccccchHhhhccchHHHHHHHhhCcHHHHHHhhcCCccc
Q psy17060         81 LNSRTIRCVCSWSRGNPMVSCVF----WMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVA  156 (234)
Q Consensus        81 ~d~~fl~kl~~~~~~~~~~~~~~----~~~~~~~aG~V~Y~~v~gfi~kN~D~l~~~~~~ll~~S~~~~v~~Lf~~~~~~  156 (234)
                       |++|++|++..+++|+.|..+.    .|++.||||+|+| +++||++||+|.++++++++|+.|++++|+.||+.....
T Consensus       451 -d~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y-~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~  528 (677)
T cd01387         451 -DHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTY-QVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQ  528 (677)
T ss_pred             -hHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeee-cCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcc
Confidence             9999999999999998886542    4799999999999 999999999999999999999999999999999754322


Q ss_pred             hhhhhHHhhhhccccchhhhhhhhhccccchhhhhchHHHHhhcc--------ccCCCCCCCCCCCccccchhhhhhhcc
Q psy17060        157 VFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHE--------ACTPEVPGSIPGGVEVFSASGVRNALS  228 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~~~l~~l~~~l--------rci~pn~~~~p~~fD~~~v~~Ql~~~~  228 (234)
                      ....         ..+..+.|++.++......+|+++|++||++|        ||||||..+.|+.||...|..||+++|
T Consensus       529 ~~~~---------~~~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~G  599 (677)
T cd01387         529 RAPK---------RLGKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSG  599 (677)
T ss_pred             cccc---------cccCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhc
Confidence            1100         00011122222233344678888999999888        999999999999999999999999999


Q ss_pred             hhhhhC
Q psy17060        229 LVKIIE  234 (234)
Q Consensus       229 i~~~~~  234 (234)
                      |+|+|+
T Consensus       600 vlE~vr  605 (677)
T cd01387         600 VLETVR  605 (677)
T ss_pred             hHHHHH
Confidence            999874

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 3e-16
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 3e-16
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 3e-16
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-16
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 3e-16
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-16
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 4e-16
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 4e-16
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 4e-16
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 4e-16
2y0r_X758 Structural Basis For The Allosteric Interference Of 4e-16
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 4e-16
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 4e-16
2y9e_X758 Structural Basis For The Allosteric Interference Of 4e-16
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-16
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 4e-16
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 4e-16
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-16
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-16
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 4e-16
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 4e-16
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 4e-16
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 4e-16
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 4e-16
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 4e-16
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 4e-16
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 1e-15
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 1e-15
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 1e-15
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 2e-15
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 2e-15
1b7t_A 835 Myosin Digested By Papain Length = 835 2e-15
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 2e-15
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 2e-15
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 2e-15
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 3e-15
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 8e-15
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 4e-14
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 4e-14
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 5e-14
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 5e-14
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 5e-14
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 6e-14
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 7e-14
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 3e-13
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 3e-13
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 3e-13
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 7e-13
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 3e-12
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 3e-12
2x51_A 789 M6 Delta Insert1 Length = 789 3e-12
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 3e-12
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 3e-12
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 3e-12
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 3e-12
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 3e-12
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 3e-12
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 3e-12
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 3e-12
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 3e-12
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507
Query: 65  VLDDQAKIRR----KFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKP-TGRGETQWSPV 119
           +LD++ K+ +     +   + N+   +C        P +S   ++IK    + E Q    
Sbjct: 508 LLDEECKMPKGSDDTWAQKLYNTHLNKCALF---EKPRLSNKAFIIKHFADKVEYQCEGF 564
Query: 120 AEMREKNLDLMRGEIVGVLKNSS 142
               EKN D +  E + VLK+S 
Sbjct: 565 L---EKNKDTVYEEQIKVLKSSK 584
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 5e-35
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 2e-34
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-33
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 7e-33
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 1e-32
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-32
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 3e-32
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 7e-31
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 1e-30
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 6e-30
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
 Score =  130 bits (330), Expect = 5e-35
 Identities = 29/67 (43%), Positives = 44/67 (65%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523

Query: 65  VLDDQAK 71
           +LD++ +
Sbjct: 524 ILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 100.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 100.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
Probab=100.00  E-value=1.6e-58  Score=440.01  Aligned_cols=207  Identities=24%  Similarity=0.357  Sum_probs=183.5

Q ss_pred             CCccchhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhCCCcccccccChHHHHHHhhcCCCchhhhhHHHhhhhccccccc
Q psy17060          1 MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAI   80 (234)
Q Consensus         1 ~~NsfeqlciNy~nE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLdee~~~~~~t~~~~   80 (234)
                      +.||||||||||||||||++|++++|+.||+||.+|||+|..|+|.||++|+|||+++|.|||+||||||++|++|    
T Consensus       394 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t----  469 (697)
T 1lkx_A          394 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST----  469 (697)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC----
T ss_pred             CcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC----
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             chhHHHHHhccccCCCCCcccc----------ccccCCCCCcceeecccccchHhhhccchHHHHHHHhhCcHHHHHHhh
Q psy17060         81 LNSRTIRCVCSWSRGNPMVSCV----------FWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELV  150 (234)
Q Consensus        81 ~d~~fl~kl~~~~~~~~~~~~~----------~~~~~~~~aG~V~Y~~v~gfi~kN~D~l~~~~~~ll~~S~~~~v~~Lf  150 (234)
                       |.+|++|+++++++|++|..+          ..|.+.||||+|+| +++||++||+|.++++++.+|+.|+++||+.||
T Consensus       470 -D~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y-~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf  547 (697)
T 1lkx_A          470 -DQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTY-DVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLF  547 (697)
T ss_dssp             -HHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEE-ECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHC
T ss_pred             -hHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEE-ccCChhhhhcccccHHHHHHHhccchHHHHHhc
Confidence             999999999999999988542          24788899999999 999999999999999999999999999999999


Q ss_pred             cCCccchhhhhHHhhhhccccchhhhhhhhhccccchhhhhchHHHHhhcc--------ccCCCCCCCCCCCccccchhh
Q psy17060        151 GADPVAVFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHE--------ACTPEVPGSIPGGVEVFSASG  222 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~~~l~~l~~~l--------rci~pn~~~~p~~fD~~~v~~  222 (234)
                      +......           +..++          .+...+|+.+|++||++|        ||||||..+.|+.||...|.+
T Consensus       548 ~~~~~~~-----------~~~r~----------~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~  606 (697)
T 1lkx_A          548 PPTRPED-----------SKKRP----------ETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRH  606 (697)
T ss_dssp             C--------------------------------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHH
T ss_pred             ccccccc-----------ccCCC----------CcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccc
Confidence            8643100           00011          123456777899999988        999999999999999999999


Q ss_pred             hhhhcchhhhhC
Q psy17060        223 VRNALSLVKIIE  234 (234)
Q Consensus       223 Ql~~~~i~~~~~  234 (234)
                      ||+++||+|.|+
T Consensus       607 QLr~~GvlE~ir  618 (697)
T 1lkx_A          607 QVRYLGLLENVR  618 (697)
T ss_dssp             HHHHHTSHHHHH
T ss_pred             cCcccccHHHHH
Confidence            999999999874
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 7e-24
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-20
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 4e-20
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 1e-19
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 6e-19
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 3e-18
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 97.1 bits (241), Expect = 7e-24
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449

Query: 65  VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQ--------- 115
           +LD+   I +      L+S   +   +    + +VS      K    G+T          
Sbjct: 450 LLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVS------KDRSIGDTCFRLKHYAGD 503

Query: 116 -WSPVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
               V    +KN D + G+++  +++SS   V+ L
Sbjct: 504 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGL 538
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=2.3e-54  Score=412.55  Aligned_cols=226  Identities=22%  Similarity=0.295  Sum_probs=179.5

Q ss_pred             CCccchhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhCCCcccccc-cChHHHHHHhhc--CCCchhhhhHHHhhhhcccc
Q psy17060          1 MSLLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKIRRKFV   77 (234)
Q Consensus         1 ~~NsfeqlciNy~nE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~--~p~Gll~lLdee~~~~~~t~   77 (234)
                      +.||||||||||||||||++|++++|..|+++|.+|||+|..|+| .||++|++||++  +|.|||++|||||++|++| 
T Consensus       394 ~~NsfEQLcINy~NE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil~lLdee~~~p~~t-  472 (710)
T d1br2a2         394 EINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKAT-  472 (710)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHHHHHHHHC----CC-
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcchhhHHHhccCCCcchhhhhhhhhcCCCCc-
Confidence            469999999999999999999999999999999999999999999 599999999997  6789999999999999999 


Q ss_pred             cccchhHHHHHhccccCCCCCccccc------cccCCCCCcceeecccccchHhhhccchHHHHHHHhhCcHHHHHHhhc
Q psy17060         78 GAILNSRTIRCVCSWSRGNPMVSCVF------WMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVG  151 (234)
Q Consensus        78 ~~~~d~~fl~kl~~~~~~~~~~~~~~------~~~~~~~aG~V~Y~~v~gfi~kN~D~l~~~~~~ll~~S~~~~v~~Lf~  151 (234)
                          |++|++|+++.+++++.|..++      .|.+.||||+|+| +++||++||+|.++++++.+|+.|++++|+.||.
T Consensus       473 ----d~~~l~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y-~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~  547 (710)
T d1br2a2         473 ----DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY-NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWK  547 (710)
T ss_dssp             ----HHHHHHHHHHHTTTSTTEEECC-----CEEEEEETTEEEEE-ECTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTC
T ss_pred             ----hHHHHHHHHHHhCCCcccCCCcccCCCCceEEEEecccEEE-ecccHHHhccchhhHHHHHHHHhCCcHHHHHHhh
Confidence                9999999999999988885432      3799999999999 9999999999999999999999999999999998


Q ss_pred             CCccchhhhhHHhhhhccccchhhhhhhhhccccchhhhhchHHHHhhcc--------ccCCCCCCCCCCCccccchhhh
Q psy17060        152 ADPVAVFRWAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHE--------ACTPEVPGSIPGGVEVFSASGV  223 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~~~l~~l~~~l--------rci~pn~~~~p~~fD~~~v~~Q  223 (234)
                      ................++.  ++..+...++..+...+|+++|++||++|        ||||||..+.|+.||...|..|
T Consensus       548 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~Q  625 (710)
T d1br2a2         548 DVDRIVGLDQMAKMTESSL--PSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQ  625 (710)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccccC--CCcccccCCCCccHHHHHHHHHHHHHHHHhCCCCeEEEEeCcCCCCCCCCCCHHHHHHH
Confidence            6543322111111111111  11111111122234567888999999998        9999999999999999999999


Q ss_pred             hhhcchhhhhC
Q psy17060        224 RNALSLVKIIE  234 (234)
Q Consensus       224 l~~~~i~~~~~  234 (234)
                      |+++||+|+|+
T Consensus       626 Lr~~Gvle~vr  636 (710)
T d1br2a2         626 LRCNGVLEGIR  636 (710)
T ss_dssp             HHHTTHHHHHH
T ss_pred             HHHhCHHHHHH
Confidence            99999999874
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure