Psyllid ID: psy17065

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Secondary Structure (PSIPRED)
cccccccEEEcccccccEEEEEEccccccccEEEEccccEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEcccccccccEEEcEEEEEEEEccccEEEEEcccccEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEHHHcccccEEEEccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEEEEEEEEEcccEEEEEcccccccHHccccccHHHHHHHHHHHccccEEEEEEHcccccccc
Coil and Loop (DISEMBL)
mgdiedahfetgdsgasttypmqcSALRKNGFvmlkarpckivdmstsktgkhghakVHMVGLdifsgkkyedicpsthnmdvpfvkredyqltdisddgylslmgdngelredlklpegelgaqlrsDYDAGKELLVSFIFLLLFRYCI
Flexible Loop (DISEMBL)
mgdiedahfetgdsgasttyPMQCSALRKNGFVMLKARPCKIVDMstsktgkhghakvHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Low Complexity Region (SEG)
MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Disordered region (IsUnstruct)
*********************MQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMG*****************AQLRSDYDAGKELLVSFIFLLLFRYC*
Disordered Region (DISOPRED)
*****DAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS****HGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Disordered Region (DISEMBL)
MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Disordered Region (DISPRO)
****************STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P62925	160	Eukaryotic translation in	N/A	N/A	0.94	0.881	0.836	2e-68
P62924	160	Eukaryotic translation in	N/A	N/A	0.94	0.881	0.836	2e-68
Q9GU68	159	Eukaryotic translation in	yes	N/A	0.933	0.880	0.773	1e-60
P10160	154	Eukaryotic translation in	yes	N/A	0.906	0.883	0.715	1e-56
Q3T1J1	154	Eukaryotic translation in	yes	N/A	0.906	0.883	0.715	3e-56
P63242	154	Eukaryotic translation in	yes	N/A	0.906	0.883	0.715	3e-56
P63241	154	Eukaryotic translation in	yes	N/A	0.906	0.883	0.715	3e-56
Q6EWQ7	154	Eukaryotic translation in	yes	N/A	0.906	0.883	0.715	3e-56
Q5R898	153	Eukaryotic translation in	yes	N/A	0.94	0.921	0.704	1e-55
Q8BGY2	153	Eukaryotic translation in	no	N/A	0.94	0.921	0.704	1e-55

>sp|P62925|IF5A_SPOFR Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 132/141 (93%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS T+PMQCSALRKNGFVMLK RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+GKKYEDICPSTHNMDVP VKREDYQLTDISDDGYL+LM DNG+LREDLK+P+G
Sbjct: 61  VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           +LG QLRSD+D+GKELL + +
Sbjct: 121 DLGTQLRSDFDSGKELLCTVL 141

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis.
Spodoptera frugiperda (taxid: 7108)

>sp|P62924|IF5A_SPOEX Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 132/141 (93%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS T+PMQCSALRKNGFVMLK RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+GKKYEDICPSTHNMDVP VKREDYQLTDISDDGYL+LM DNG+LREDLK+P+G
Sbjct: 61  VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           +LG QLRSD+D+GKELL + +
Sbjct: 121 DLGTQLRSDFDSGKELLCTVL 141

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis.

Spodoptera exigua (taxid: 7107)

>sp|Q9GU68|IF5A_DROME Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=2 SV=2

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M +++D  FET DSGASTTYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVHM
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIFS KKYEDICPSTHNMDVP VKRED QL  ISDD +L+LM ++G+LREDLK+PEG
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELG QLR D+D+GK+LL + +
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVL 140

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis.

Drosophila melanogaster (taxid: 7227)

>sp|P10160|IF5A1_RABIT Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 121/137 (88%), Gaps = 1/137 (0%)

Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct: 3   DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKKYEDICPSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG 
Sbjct: 63  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGK 121

Query: 125 QLRSDYDAGKELLVSFI 141
           ++   YD+G+E+L++ +
Sbjct: 122 EIEQKYDSGEEILITVL 138

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q3T1J1|IF5A1_RAT Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct: 3   DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKKYEDICPSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG 
Sbjct: 63  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGK 121

Query: 125 QLRSDYDAGKELLVSFI 141
           ++   YD G+E+L++ +
Sbjct: 122 EIEQKYDCGEEILITVL 138

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival (By similarity). May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P63242|IF5A1_MOUSE Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct: 3   DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKKYEDICPSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG 
Sbjct: 63  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGK 121

Query: 125 QLRSDYDAGKELLVSFI 141
           ++   YD G+E+L++ +
Sbjct: 122 EIEQKYDCGEEILITVL 138

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Mus musculus (taxid: 10090)

>sp|P63241|IF5A1_HUMAN Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct: 3   DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKKYEDICPSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG 
Sbjct: 63  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGK 121

Query: 125 QLRSDYDAGKELLVSFI 141
           ++   YD G+E+L++ +
Sbjct: 122 EIEQKYDCGEEILITVL 138

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation. Also described as a cellular cofactor of human T-cell leukemia virus type I (HTLV-1) Rex protein and of human immunodeficiency virus type 1 (HIV-1) Rev protein, essential for mRNA export of retroviral transcripts.

Homo sapiens (taxid: 9606)

>sp|Q6EWQ7|IF5A1_BOVIN Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct: 3   DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKKYEDICPSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG 
Sbjct: 63  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGK 121

Query: 125 QLRSDYDAGKELLVSFI 141
           ++   YD G+E+L++ +
Sbjct: 122 EIEQKYDCGEEILITVL 138

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Bos taurus (taxid: 9913)

>sp|Q5R898|IF5A2_PONAB Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 120/142 (84%), Gaps = 1/142 (0%)

Query: 9   FETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSG 68
           F TGD+GAS+TYPMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+G
Sbjct: 7   FTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTG 66

Query: 69  KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRS 128
           KKYEDICPSTHNMDVP +KR DYQL  I  DGYLSL+ + GE+REDLKLPEGELG ++  
Sbjct: 67  KKYEDICPSTHNMDVPNIKRNDYQLICIQ-DGYLSLLTETGEVREDLKLPEGELGKEIEG 125

Query: 129 DYDAGKELLVSFIFLLLFRYCI 150
            Y+AG+++ VS +  +   Y +
Sbjct: 126 KYNAGEDVQVSVMCAMSEEYAV 147

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Pongo abelii (taxid: 9601)

>sp|Q8BGY2|IF5A2_MOUSE Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 120/142 (84%), Gaps = 1/142 (0%)

Query: 9   FETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSG 68
           F TGD+GAS+TYPMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+G
Sbjct: 7   FTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTG 66

Query: 69  KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRS 128
           KKYEDICPSTHNMDVP +KR DYQL  I  DGYLSL+ + GE+REDLKLPEGELG ++  
Sbjct: 67  KKYEDICPSTHNMDVPNIKRNDYQLICIQ-DGYLSLLTETGEVREDLKLPEGELGKEIEG 125

Query: 129 DYDAGKELLVSFIFLLLFRYCI 150
            Y+AG+++ VS +  +   Y +
Sbjct: 126 KYNAGEDVQVSVMCAMSEEYAV 147

mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
307201316	168	Eukaryotic translation initiation factor	0.946	0.845	0.874	3e-69
240848715	160	translation initiation factor 5a-like [A	0.94	0.881	0.872	5e-69
380011502	234	PREDICTED: eukaryotic translation initia	0.94	0.602	0.851	8e-69
156546014	160	PREDICTED: eukaryotic translation initia	0.94	0.881	0.865	8e-69
332373162	160	unknown [Dendroctonus ponderosae]	0.94	0.881	0.865	1e-68
149898825	160	translation initiation factor 5a [Triato	0.94	0.881	0.872	2e-68
121543817	160	putative eukaryotic translation initiati	0.94	0.881	0.879	4e-68
110767655	160	PREDICTED: eukaryotic translation initia	0.94	0.881	0.851	6e-68
242006998	160	eukaryotic translation initiation factor	0.94	0.881	0.851	1e-67
383859585	160	PREDICTED: eukaryotic translation initia	0.94	0.881	0.851	1e-67

>gi|307201316|gb|EFN81163.1| Eukaryotic translation initiation factor 5A [Harpegnathos saltator]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 135/143 (94%), Gaps = 1/143 (0%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+ KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL LM DNGELREDLK+P+G
Sbjct: 61  VGIDIFTSKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLCLMADNGELREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVS-FIF 142
           ELG QLR+DY+AGKELLVS F+F
Sbjct: 121 ELGTQLRADYEAGKELLVSKFLF 143

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848715|ref|NP_001155488.1| translation initiation factor 5a-like [Acyrthosiphon pisum] gi|239788242|dbj|BAH70809.1| ACYPI002632 [Acyrthosiphon pisum]

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 133/141 (94%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL LM DNG+LREDLK+P+ 
Sbjct: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLCLMSDNGDLREDLKIPDA 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           E+G QL+++YDAGKELL + +
Sbjct: 121 EIGQQLKNEYDAGKELLCTVL 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011502|ref|XP_003689841.1| PREDICTED: eukaryotic translation initiation factor 5A-like [Apis florea]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 132/141 (93%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 75  MADIEDTHFETGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 134

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+ KKYEDICPSTHNMDVPFVKREDYQL DISDDGYL LM DNGELREDLK+P+G
Sbjct: 135 VGIDIFTSKKYEDICPSTHNMDVPFVKREDYQLADISDDGYLCLMADNGELREDLKIPDG 194

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELGAQLR+D++AGKELL + +
Sbjct: 195 ELGAQLRADHEAGKELLCTVL 215

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546014|ref|XP_001607976.1| PREDICTED: eukaryotic translation initiation factor 5A-like isoform 2 [Nasonia vitripennis] gi|156546016|ref|XP_001607974.1| PREDICTED: eukaryotic translation initiation factor 5A-like isoform 1 [Nasonia vitripennis] gi|156546018|ref|XP_001607980.1| PREDICTED: eukaryotic translation initiation factor 5A-like isoform 3 [Nasonia vitripennis] gi|345498361|ref|XP_003428212.1| PREDICTED: eukaryotic translation initiation factor 5A-like [Nasonia vitripennis]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 122/141 (86%), Positives = 132/141 (93%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIFS KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL LM DNG+LREDLK+P+G
Sbjct: 61  VGIDIFSSKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLCLMADNGDLREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELG QLR+DYDAGKELL + +
Sbjct: 121 ELGTQLRADYDAGKELLCTVL 141

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373162|gb|AEE61722.1| unknown [Dendroctonus ponderosae]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/141 (86%), Positives = 134/141 (95%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLKARPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASATYPMQCSALRKNGFVMLKARPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIFSGKKYEDICPSTHNMDVP VKREDYQLTDISDDGYLSLM DNG+LREDLK+P+G
Sbjct: 61  VGIDIFSGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLSLMSDNGDLREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           E+GAQLRS+YDAGK++L + +
Sbjct: 121 EVGAQLRSEYDAGKDILCTVL 141

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898825|gb|ABR27878.1| translation initiation factor 5a [Triatoma infestans]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 134/141 (95%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HF+TGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFDTGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL LM DNG+LREDLKLP+G
Sbjct: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLCLMSDNGDLREDLKLPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           +LGAQLRS++DAGKELL + +
Sbjct: 121 DLGAQLRSEFDAGKELLCTVL 141

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543817|gb|ABM55573.1| putative eukaryotic translation initiation factor 5A [Maconellicoccus hirsutus]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 133/141 (94%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HF+TGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFDTGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VGLDIFSGKKYEDICPSTHNMDVP VKREDYQLT ISDDGYLSLM DNGELREDLK+P+G
Sbjct: 61  VGLDIFSGKKYEDICPSTHNMDVPHVKREDYQLTCISDDGYLSLMSDNGELREDLKVPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           +LGAQL+S+YD GKELL + +
Sbjct: 121 DLGAQLKSEYDGGKELLCTVL 141

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110767655|ref|XP_624951.2| PREDICTED: eukaryotic translation initiation factor 5A-like [Apis mellifera]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 132/141 (93%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+ KKYEDICPSTHNMDVPFVKREDYQL DISDDGYL LM DNGELREDLK+P+G
Sbjct: 61  VGIDIFTSKKYEDICPSTHNMDVPFVKREDYQLADISDDGYLCLMADNGELREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELGAQLR+D++AGKELL + +
Sbjct: 121 ELGAQLRADHEAGKELLCTVL 141

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006998|ref|XP_002424329.1| eukaryotic translation initiation factor 5A, putative [Pediculus humanus corporis] gi|212507729|gb|EEB11591.1| eukaryotic translation initiation factor 5A, putative [Pediculus humanus corporis]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 133/141 (94%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M +IED HFETGDSGAS TYP QCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEIEDTHFETGDSGASNTYPQQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL LM DNG+LREDLK+P+G
Sbjct: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLCLMADNGDLREDLKVPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELGAQL++D++AGKELL + +
Sbjct: 121 ELGAQLKADFEAGKELLCTVL 141

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859585|ref|XP_003705274.1| PREDICTED: eukaryotic translation initiation factor 5A-like [Megachile rotundata]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 131/141 (92%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M DIED HFETGDSGAS TYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MADIEDTHFETGDSGASVTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 60

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           VG+DIF+ KKYEDICPSTHNMDVPFVKREDYQL DISDDGYL LM DNGELREDLK+P+G
Sbjct: 61  VGIDIFTSKKYEDICPSTHNMDVPFVKREDYQLADISDDGYLCLMADNGELREDLKIPDG 120

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELG QLR+D+DAGKELL + +
Sbjct: 121 ELGIQLRADHDAGKELLCTVL 141

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
FB|FBgn0034967	159	eIF-5A "eIF-5A" [Drosophila me	0.933	0.880	0.773	2e-56
UNIPROTKB|P10160	154	EIF5A "Eukaryotic translation	0.906	0.883	0.715	3e-53
UNIPROTKB|Q6EWQ7	154	EIF5A "Eukaryotic translation	0.906	0.883	0.715	3.8e-53
UNIPROTKB|F1Q264	154	EIF5A "Uncharacterized protein	0.906	0.883	0.715	3.8e-53
UNIPROTKB|I3L397	147	EIF5A "Eukaryotic translation	0.906	0.925	0.715	3.8e-53
UNIPROTKB|P63241	154	EIF5A "Eukaryotic translation	0.906	0.883	0.715	3.8e-53
UNIPROTKB|F2Z5M3	154	EIF5A "Uncharacterized protein	0.906	0.883	0.715	3.8e-53
MGI|MGI:106248	154	Eif5a "eukaryotic translation	0.906	0.883	0.715	3.8e-53
RGD|1308029	154	Eif5a "eukaryotic translation	0.906	0.883	0.715	3.8e-53
UNIPROTKB|I3L504	186	EIF5A "Eukaryotic translation	0.886	0.715	0.738	4.9e-53

FB|FBgn0034967 eIF-5A "eIF-5A" [Drosophila melanogaster (taxid:7227)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 109/141 (77%), Positives = 126/141 (89%)

Query:     1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
             M +++D  FET DSGASTTYPMQCSALRKNGFVMLK+RPCKIV+MSTSKTGKHGHAKVHM
Sbjct:     1 MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query:    61 VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
             VG+DIFS KKYEDICPSTHNMDVP VKRED QL  ISDD +L+LM ++G+LREDLK+PEG
Sbjct:    60 VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query:   121 ELGAQLRSDYDAGKELLVSFI 141
             ELG QLR D+D+GK+LL + +
Sbjct:   120 ELGEQLRLDFDSGKDLLCTVL 140

GO:0006413 "translational initiation" evidence=ISS;NAS

GO:0045182 "translation regulator activity" evidence=ISS

GO:0005829 "cytosol" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0032504 "multicellular organism reproduction" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0006452 "translational frameshifting" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0035220 "wing disc development" evidence=IGI

UNIPROTKB|P10160 EIF5A "Eukaryotic translation initiation factor 5A-1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 98/137 (71%), Positives = 121/137 (88%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD+G+E+L++ +
Sbjct:   122 EIEQKYDSGEEILITVL 138

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

UNIPROTKB|Q6EWQ7 EIF5A "Eukaryotic translation initiation factor 5A-1" [Bos taurus (taxid:9913)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

UNIPROTKB|F1Q264 EIF5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

UNIPROTKB|I3L397 EIF5A "Eukaryotic translation initiation factor 5A-1" [Homo sapiens (taxid:9606)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

UNIPROTKB|P63241 EIF5A "Eukaryotic translation initiation factor 5A-1" [Homo sapiens (taxid:9606)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0006452 "translational frameshifting" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0017070 "U6 snRNA binding" evidence=IDA

GO:0005642 "annulate lamellae" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IMP;IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5M3 EIF5A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

MGI|MGI:106248 Eif5a "eukaryotic translation initiation factor 5A" [Mus musculus (taxid:10090)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0003723 "RNA binding" evidence=ISO

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005642 "annulate lamellae" evidence=ISO

GO:0005643 "nuclear pore" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0006915 "apoptotic process" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017070 "U6 snRNA binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0043022 "ribosome binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

GO:0051149 "positive regulation of muscle cell differentiation" evidence=ISO

RGD|1308029 Eif5a "eukaryotic translation initiation factor 5A" [Rattus norvegicus (taxid:10116)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 98/137 (71%), Positives = 120/137 (87%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLVSFI 141
             ++   YD G+E+L++ +
Sbjct:   122 EIEQKYDCGEEILITVL 138

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=ISO

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005642 "annulate lamellae" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006452 "translational frameshifting" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007568 "aging" evidence=IEP

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017070 "U6 snRNA binding" evidence=ISO

GO:0030425 "dendrite" evidence=IDA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

GO:0051149 "positive regulation of muscle cell differentiation" evidence=IMP

UNIPROTKB|I3L504 EIF5A "Eukaryotic translation initiation factor 5A-1" [Homo sapiens (taxid:9606)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 99/134 (73%), Positives = 118/134 (88%)

Query:     5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
             +D  FETGD+GAS T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+D
Sbjct:     3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 62

Query:    65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
             IF+GKKYEDICPSTHNMDVP +KR D+QL  I D GYLSL+ D+GE+REDL+LPEG+LG 
Sbjct:    63 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD-GYLSLLQDSGEVREDLRLPEGDLGK 121

Query:   125 QLRSDYDAGKELLV 138
             ++   YD G+E+LV
Sbjct:   122 EIEQKYDCGEEILV 135

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09121	IF5A1_CHICK	No assigned EC number	0.7238	0.8866	0.9236	yes	N/A
Q5R898	IF5A2_PONAB	No assigned EC number	0.7042	0.94	0.9215	yes	N/A
P62925	IF5A_SPOFR	No assigned EC number	0.8368	0.94	0.8812	N/A	N/A
Q58625	IF5A_METJA	No assigned EC number	0.3394	0.6266	0.7121	yes	N/A
Q9AXQ3	IF5A4_SOLLC	No assigned EC number	0.5467	0.9133	0.8562	N/A	N/A
P10160	IF5A1_RABIT	No assigned EC number	0.7153	0.9066	0.8831	yes	N/A
Q9GZV4	IF5A2_HUMAN	No assigned EC number	0.7042	0.94	0.9215	no	N/A
P69039	IF5A1_NICPL	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
P13651	IF5A_DICDI	No assigned EC number	0.6056	0.9266	0.8742	yes	N/A
Q9SC12	IF5A_SENVE	No assigned EC number	0.5467	0.9133	0.8616	N/A	N/A
Q6IS14	IF5AL_HUMAN	No assigned EC number	0.6934	0.9066	0.8831	yes	N/A
P56289	IF5A1_SCHPO	No assigned EC number	0.6312	0.9333	0.8917	yes	N/A
Q93VP3	IF5A2_ARATH	No assigned EC number	0.5507	0.9133	0.8616	no	N/A
P23301	IF5A1_YEAST	No assigned EC number	0.6788	0.9066	0.8662	no	N/A
Q3T1J1	IF5A1_RAT	No assigned EC number	0.7153	0.9066	0.8831	yes	N/A
Q9UST4	IF5A2_SCHPO	No assigned EC number	0.6312	0.9333	0.8284	yes	N/A
E9AXF0	IF5A_LEIMU	No assigned EC number	0.5070	0.8933	0.8072	N/A	N/A
P80639	IF5A_MAIZE	No assigned EC number	0.5602	0.9266	0.8687	N/A	N/A
P56337	IF5A5_SOLTU	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
P56336	IF5A4_SOLTU	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
P56335	IF5A3_SOLTU	No assigned EC number	0.5611	0.9133	0.8562	N/A	N/A
P69040	IF5A1_TOBAC	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
P56333	IF5A1_SOLTU	No assigned EC number	0.5467	0.9133	0.8562	N/A	N/A
Q945F4	IF5A2_MEDSA	No assigned EC number	0.5755	0.9133	0.8616	N/A	N/A
P24922	IF5A2_NICPL	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
Q20751	IF5A2_CAEEL	No assigned EC number	0.6967	0.8	0.7453	yes	N/A
Q8BGY2	IF5A2_MOUSE	No assigned EC number	0.7042	0.94	0.9215	no	N/A
Q9XI91	IF5A1_ARATH	No assigned EC number	0.5942	0.9133	0.8670	yes	N/A
P19211	IF5A2_YEAST	No assigned EC number	0.6934	0.9066	0.8662	yes	N/A
P62924	IF5A_SPOEX	No assigned EC number	0.8368	0.94	0.8812	N/A	N/A
Q07460	IF5A2_CHICK	No assigned EC number	0.7218	0.88	0.8627	yes	N/A
P63242	IF5A1_MOUSE	No assigned EC number	0.7153	0.9066	0.8831	yes	N/A
P63241	IF5A1_HUMAN	No assigned EC number	0.7153	0.9066	0.8831	yes	N/A
Q9AXQ4	IF5A3_SOLLC	No assigned EC number	0.5611	0.9133	0.8616	N/A	N/A
Q9AXQ5	IF5A2_SOLLC	No assigned EC number	0.5539	0.9133	0.8562	N/A	N/A
Q9AXQ6	IF5A1_SOLLC	No assigned EC number	0.5539	0.9133	0.8616	N/A	N/A
Q9AXQ7	IF5A_DIACA	No assigned EC number	0.5611	0.9133	0.8562	N/A	N/A
Q6EWQ7	IF5A1_BOVIN	No assigned EC number	0.7153	0.9066	0.8831	yes	N/A
Q9C505	IF5A3_ARATH	No assigned EC number	0.5652	0.9133	0.8670	no	N/A
O94083	IF5A_CANAL	No assigned EC number	0.6642	0.9066	0.8662	N/A	N/A
P26564	IF5A1_MEDSA	No assigned EC number	0.5357	0.9133	0.8509	N/A	N/A
Q9GU68	IF5A_DROME	No assigned EC number	0.7730	0.9333	0.8805	yes	N/A
Q9AXJ4	IF5A_MANES	No assigned EC number	0.5539	0.9133	0.8562	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
PLN03107	159	PLN03107, PLN03107, eukaryotic translation initiat	2e-70
TIGR00037	130	TIGR00037, eIF_5A, translation elongation factor I	1e-49
PTZ00328	166	PTZ00328, PTZ00328, eukaryotic initiation factor 5	2e-48
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	3e-25
pfam01287	69	pfam01287, eIF-5a, Eukaryotic elongation factor 5A	2e-24
cd04468	69	cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translatio	5e-24
PRK03999	129	PRK03999, PRK03999, translation initiation factor	1e-18
TIGR00038	184	TIGR00038, efp, translation elongation factor P	0.004

>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional

 Score =  209 bits (533), Expect = 2e-70
 Identities = 78/139 (56%), Positives = 105/139 (75%), Gaps = 2/139 (1%)

Query: 3   DIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVG 62
             E+ HFE+ D+GAS TYP Q   +RK G++++K RPCK+V++STSKTGKHGHAK H V 
Sbjct: 2   SDEEHHFESADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 61

Query: 63  LDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG-- 120
           +DIF+GKK EDI PS+HN DVP V R DYQL DIS+DG++SLM ++G  ++DLKLP    
Sbjct: 62  IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTEDD 121

Query: 121 ELGAQLRSDYDAGKELLVS 139
            L  Q++  +D GK+L+V+
Sbjct: 122 TLAEQIKDGFDEGKDLVVT 140

Length = 159

>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A

 Score =  154 bits (392), Expect = 1e-49
 Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 8/132 (6%)

Query: 16  ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC 75
            S T  +Q SALR  G+V++  RPCKIVD+STSK GKHGHAK  +V + IF+GKK E + 
Sbjct: 1   MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVS 60

Query: 76  PSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDA--- 132
           PST  ++VP V R +YQ+  I   G + LM  +    ++L +PE ELG  L   ++    
Sbjct: 61  PSTSKVEVPIVDRREYQVLAI-MGGMVQLMDLDTYETDELPIPE-ELGDSLEPGFEVEYI 118

Query: 133 ---GKELLVSFI 141
              G+E ++ F 
Sbjct: 119 EAMGQEKIIRFK 130

Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor [Protein synthesis, Translation factors]. Length = 130

>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional

 Score =  153 bits (387), Expect = 2e-48
 Identities = 73/147 (49%), Positives = 96/147 (65%), Gaps = 10/147 (6%)

Query: 1   MGDIEDAHF--ETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKV 58
           M D ED  F  + G   AS TYP+   AL+K G+V +  RPCK++D+S SKTGKHGHAKV
Sbjct: 1   MSD-EDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKV 59

Query: 59  HMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELR 112
            +V  DIF+G + ED  PSTHN++VPFVK   Y + DI  +       +LSLM D GE R
Sbjct: 60  SIVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESR 119

Query: 113 EDLKL-PEGELGAQLRSDYDAGKELLV 138
           EDL + P+  L  Q++  +D+GKE+LV
Sbjct: 120 EDLDMPPDAALATQIKEQFDSGKEVLV 146

Length = 166

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score = 93.0 bits (232), Expect = 3e-25
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 19  TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
              +  S LRK  ++++   P  +V++S  K GK G A V +   ++F+GKK E    + 
Sbjct: 1   MAMISASELRKGLYIVIDGEPYVVVEISHVKPGKGG-AFVRVKLKNLFTGKKVEKTFKAD 59

Query: 79  HNMDVPFVKREDYQLTDISDDGY 101
             ++V  V+R+  Q   I  D Y
Sbjct: 60  DKVEVAIVERKTAQYLYIDGDFY 82

Length = 131

>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

 Score = 89.1 bits (222), Expect = 2e-24
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 85  FVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI 141
            VKR +YQL DIS DG+LSLM ++GE +EDLKLP+GELG +++  ++ GKE+LV+ +
Sbjct: 1   IVKRTEYQLIDISGDGFLSLMDEDGETKEDLKLPDGELGEEIKEKFEEGKEVLVTVL 57

eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast. Length = 69

>gnl|CDD|239914 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

 Score = 88.0 bits (219), Expect = 5e-24
 Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 86  VKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI 141
           VKR +YQL DI DDG+LSLM D+GE REDLKLPEGELG ++R  +D GK++LV+ +
Sbjct: 1   VKRTEYQLIDI-DDGFLSLMDDDGETREDLKLPEGELGKEIREKFDEGKDVLVTVL 55

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed. Length = 69

>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional

 Score = 76.1 bits (188), Expect = 1e-18
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 16/110 (14%)

Query: 27  LRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFV 86
           L++  +V++   PCKIV++S SK GKHG AK  +V + IF G+K   + P    ++VP +
Sbjct: 11  LKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPII 70

Query: 87  KREDYQLTDISDDGYLSLMGDNGELRE-------DLKLPEGELGAQLRSD 129
           +++  Q+        LS+MGD  +L +       ++ +PE EL  +L   
Sbjct: 71  EKKTGQV--------LSIMGDVVQLMDLETYETFEIPIPE-ELKDKLEPG 111

Length = 129

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 27  LRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFV 86
           LRK   + L   P  +++    K GK G A V +   ++ +GK  E    S   ++   V
Sbjct: 6   LRKGLVIELDGEPYVVLEFEHVKPGK-GQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADV 64

Query: 87  KREDYQLTDISDDGY 101
           +  + Q      D Y
Sbjct: 65  EEREMQYLYKDGDSY 79

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	100.0
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	100.0
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	100.0
PRK03999	129	translation initiation factor IF-5A; Provisional	100.0
KOG3271|consensus	156		100.0
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	100.0
PRK12426	185	elongation factor P; Provisional	100.0
PRK14578	187	elongation factor P; Provisional	100.0
PRK04542	189	elongation factor P; Provisional	100.0
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	100.0
PRK00529	186	elongation factor P; Validated	100.0
TIGR00038	184	efp translation elongation factor P. function: inv	100.0
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	99.86
PF01287	69	eIF-5a: Eukaryotic elongation factor 5A hypusine,	99.65
cd04468	69	S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati	99.57
cd04470	61	S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo	99.51
PF01132	55	EFP: Elongation factor P (EF-P) OB domain; InterPr	99.49
cd04469	75	S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain.	99.39
cd04463	55	S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin	99.2
cd04467	57	S1_aIF5A S1_aIF5A: Archaeal translation Initiation	98.4
COG1499	355	NMD3 NMD protein affecting ribosome stability and	96.45

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=100.00  E-value=1.6e-49  Score=307.48  Aligned_cols=149  Identities=54%  Similarity=0.943  Sum_probs=139.9

Q ss_pred             CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065          1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN   80 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~   80 (150)
                      |++.| ++|+++++++|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|||+++
T Consensus         1 ~~~~~-~~~~~~~~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~   79 (159)
T PLN03107          1 MSDEE-HHFESADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHN   79 (159)
T ss_pred             CCccc-ccccccccCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCE
Confidence            77744 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecCh--hhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPE--GELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~--~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      ++.|+|++++|||||+|++++|+|||.+|++|||+.||+  +.|++.++.++.+|.++.|+++++||+|.++
T Consensus        80 ve~~~ve~~~~qyly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~g~~~~v~v~~~mg~e~i~  151 (159)
T PLN03107         80 CDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDEGKDLVVTVMSAMGEEQIC  151 (159)
T ss_pred             EEEEEEEEEEEEEEEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhCCCeEEEEEEecCCeEEEE
Confidence            999999999999999995554699997677899999995  6799999999999999999999999999864

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=100.00  E-value=4.3e-44  Score=277.47  Aligned_cols=149  Identities=48%  Similarity=0.830  Sum_probs=141.6

Q ss_pred             CCCccccccc--cCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCC
Q psy17065          1 MGDIEDAHFE--TGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST   78 (150)
Q Consensus         1 ~~~~~~~~~~--~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~   78 (150)
                      |||+| ++|+  +++|++|.|+|++++.||+|.||+|+|+||+|++++++||||||+|++|+.+.+||||+++|...||+
T Consensus         1 m~d~~-~~f~~~~~~~gas~t~p~q~~~LkkG~yvvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~   79 (166)
T PTZ00328          1 MSDED-HDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST   79 (166)
T ss_pred             CCccc-cccccccCCCCCCceecccccceeECCEEEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCcc
Confidence            88855 8999  59999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEecceEEEEeeEEEEeeCC------CcEEEecCCCceeeeeecCh-hhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         79 HNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELREDLKLPE-GELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        79 ~~ve~~~v~~~~~qyly~d~~------~~~~fMdet~e~~Eqi~l~~-~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +++++|+|+|++||+|.++++      +++.+||++|++.+++.||. +.|+.+++..|.+|.+|.|+++++||+|.+|
T Consensus        80 hnv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd~~g~~k~dl~lp~~~el~~~ik~~f~~g~ev~v~vi~amG~e~ii  158 (166)
T PTZ00328         80 HNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESREDLDMPPDAALATQIKEQFDSGKEVLVVVVSAMGTEQVL  158 (166)
T ss_pred             ceeEeeeEEeeEEEEEEEcCCCcccccceEEEEcCCCCeeecccCCChhHHHHHHHHHhcCCCeEEEEEEhhCCeeehh
Confidence            999999999999999999855      68999997788899999997 8999999999999999999999999999865

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=100.00  E-value=2.8e-43  Score=264.75  Aligned_cols=126  Identities=46%  Similarity=0.699  Sum_probs=115.7

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD   95 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly   95 (150)
                      ++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++++.|+|++++|||||
T Consensus         1 ~~~~~~~~~~~irkG~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY   80 (130)
T TIGR00037         1 MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLA   80 (130)
T ss_pred             CCcceeccHHHccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +| |++|+||| +|||   |+.||.+.  + +.+||++|++  |.++++||+|.++
T Consensus        81 ~d-g~~~~fMd~etye---q~~i~~~~--~-~~~~Lke~~~--V~v~~~~g~~~~~  127 (130)
T TIGR00037        81 IM-GGMVQLMDLDTYE---TDELPIPE--E-LGDSLEPGFE--VEYIEAMGQEKII  127 (130)
T ss_pred             ec-CCEEEEEcCCCcE---EEEecCCh--h-HHHHhhcCCE--EEEEecCCeEEEE
Confidence            98 77899999 7866   55666554  4 4889999997  7789999999764

Observed in eukaryotes and archaea.

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=100.00  E-value=2.6e-40  Score=248.39  Aligned_cols=123  Identities=28%  Similarity=0.520  Sum_probs=113.4

Q ss_pred             eeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeC
Q psy17065         19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISD   98 (150)
Q Consensus        19 t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~   98 (150)
                      ..|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||++++.+|+|+++++.|.|++++|||||.| 
T Consensus         3 ~~~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~d-   81 (129)
T PRK03999          3 KKQVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIM-   81 (129)
T ss_pred             cccccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEec-
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         99 DGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        99 ~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +++|+||| ||||   |+.||.+  ++. +.||++|+.  |.+++|||+|.++
T Consensus        82 g~~~~fMd~eTye---q~~i~~~--~d~-~~~l~eg~~--v~v~~~~g~~~~~  126 (129)
T PRK03999         82 GDVVQLMDLETYE---TFEIPIP--EEL-KDKLEPGVE--VEYWEAMGRRKIM  126 (129)
T ss_pred             CCEEEEecCCCce---EEEecCC--hhH-HhhCcCCCE--EEEEhhCCeEEEE
Confidence            67899999 8877   5577766  665 889999996  5599999999864

>KOG3271|consensus

Probab=100.00  E-value=8.8e-41  Score=252.62  Aligned_cols=148  Identities=70%  Similarity=1.134  Sum_probs=141.7

Q ss_pred             CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065          1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN   80 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~   80 (150)
                      |+|+|. +|++++++++.|+|.+++.|||+.+|.++|+||+|++.+.+|+||||+|++++..++||||+++|..+||+++
T Consensus         1 Msd~~~-~Fe~~dagas~t~p~q~salrkNG~vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn   79 (156)
T KOG3271|consen    1 MSDEEH-RFETGDAGASATYPMQCSALRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHN   79 (156)
T ss_pred             CCcccc-ccccCCCcccccccchhhheeeCCEEEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCc
Confidence            676554 5999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +++|+++|.+||++.++ ++++.||+++|++.+++.+|.+.|+++++.-+.+|.++.|+|+++||.|..+
T Consensus        80 ~dVp~vkr~~yqLidIs-d~~~sl~t~sG~~kdDlklp~~el~~~i~~~~e~g~dl~v~Vlsa~gee~~~  148 (156)
T KOG3271|consen   80 MDVPVVKRVDYQLIDIS-DGYLSLMTDSGETKDDLKLPEGELGNQIRQGFEEGKDLLVTVLSAMGEEAAV  148 (156)
T ss_pred             cccCccccceeEEEEec-CCeEEEEcCCCCcchhccCcchhHHHHHHHhhcCCCcEEEEEhhhhCchhhe
Confidence            99999999999999999 7799999988999999999999999999999999999999999999998653

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.5e-39  Score=242.31  Aligned_cols=120  Identities=26%  Similarity=0.388  Sum_probs=109.8

Q ss_pred             eeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC
Q psy17065         20 YPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD   99 (150)
Q Consensus        20 ~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~   99 (150)
                      .|+++++||+|++|+++|+||+|++++|+|||||| |++|+++|||+||++++.+|+++++++.|.|+++++||||.| |
T Consensus         2 ~~i~~~~lr~G~~i~~dg~~~~V~~~~~~KpGKg~-a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~d-g   79 (131)
T COG0231           2 AMISASELRKGLYIVIDGEPYVVVEISHVKPGKGG-AFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYID-G   79 (131)
T ss_pred             ceeeHHHccCCCEEEECCeEEEEEEEEEccCCCCC-cEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcC-C
Confidence            58999999999999999999999999999999966 599999999999999999999999999999999999999999 7


Q ss_pred             CcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEeccccee
Q psy17065        100 GYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFR  147 (150)
Q Consensus       100 ~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~  147 (150)
                      +.|+||| ||||   |+.||.+.+++. ..||+||++|.|+  ..+|+.
T Consensus        80 ~~~~FMD~etye---q~~v~~~~~~d~-~~~l~eg~~v~v~--~~~g~~  122 (131)
T COG0231          80 DFYVFMDLETYE---QYELPKDQIGDA-AKFLKEGMEVEVL--LYNGEP  122 (131)
T ss_pred             CeEEEccCCCce---EEEecchhhhhH-HHhcCCCCEEEEE--EECCEE
Confidence            7899999 8865   779999999987 8899999996654  445554

>PRK12426 elongation factor P; Provisional

Probab=100.00  E-value=7.3e-38  Score=247.48  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=109.6

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG  100 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~  100 (150)
                      |+++++||+|++|+++|+||.|++++|+|||| |+|++|+|+|||.||+++|+||+|+++++.+.++++++||||.| ++
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGk-g~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~d-g~   78 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPK-GETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLE-GD   78 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCC-CceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEEC-CC
Confidence            57899999999999999999999999999999 88999999999999999999999999999999999999999999 66


Q ss_pred             cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065        101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus       101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      .|+||| +|||   |+.||++.||++ ..||+||+.|.|++..
T Consensus        79 ~~~FMd~etye---Qi~i~~~~lgd~-~~fL~e~~~v~v~~~~  117 (185)
T PRK12426         79 EYLFLDLGNYD---KIYIPKEIMKDN-FLFLKAGVTVSALVYD  117 (185)
T ss_pred             eEEEecCCCce---EEEeCHHHhhhH-HhhccCCCEEEEEEEC
Confidence            799999 7755   789999999998 8899999999998763

>PRK14578 elongation factor P; Provisional

Probab=100.00  E-value=1.3e-36  Score=240.72  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=109.0

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCC-cccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKH-GHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD   99 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKh-G~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~   99 (150)
                      |+++++||+|++|+++|+||+|++++|+||||+ |+|++|+|+|||.||++.|++|+|+++++.|+|+++++||||.| +
T Consensus         1 m~~~~dik~G~~i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~d-g   79 (187)
T PRK14578          1 MYTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYAD-G   79 (187)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeC-C
Confidence            578999999999999999999999999999986 46799999999999999999999999999999999999999999 7


Q ss_pred             CcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065        100 GYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus       100 ~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      +.|+||| +|||   |+.||++.+|++ ..||+||++|.|++..
T Consensus        80 ~~~~FMD~etyE---Q~~i~~~~~g~~-~~fL~e~~~v~v~~~~  119 (187)
T PRK14578         80 DRGVFMDLETYE---QFEMEEDAFSAI-APFLLDGTEVQLGLFQ  119 (187)
T ss_pred             CEEEEecCCCcE---EEEecHHHhhhH-HhhccCCCEEEEEEEC
Confidence            7799999 7755   779999999997 8899999999998763

>PRK04542 elongation factor P; Provisional

Probab=100.00  E-value=1.5e-36  Score=240.68  Aligned_cols=117  Identities=14%  Similarity=0.146  Sum_probs=109.1

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecC-CCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKT-GKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD   99 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kp-GKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~   99 (150)
                      |+++++||+|++|+++|+||+|++++|+|| ||+|+|++|+|+|||.||+++++||+|+++++.+++++++|||||.| +
T Consensus         1 mi~~~dik~G~~i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~d-g   79 (189)
T PRK04542          1 MPKANEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYID-G   79 (189)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeC-C
Confidence            578999999999999999999999999999 79657799999999999999999999999999999999999999999 6


Q ss_pred             CcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCe-EEEEEec
Q psy17065        100 GYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKE-LLVSFIF  142 (150)
Q Consensus       100 ~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~-v~v~~~~  142 (150)
                      +.|+||| +|||   |+.||++.||++ .+||+||+. |.|++..
T Consensus        80 ~~~~FMd~etyE---Q~~i~~~~lgd~-~~~L~e~~~~v~v~~~~  120 (189)
T PRK04542         80 DEYVFMDNEDYT---PYTFKKDQIEDE-LLFIPEGMPGMQVLTVD  120 (189)
T ss_pred             CEEEEecCCCce---EEEECHHHhhhH-hhhhhcCCEEEEEEEEC
Confidence            7799999 7755   789999999997 889999998 9988764

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=100.00  E-value=9e-35  Score=230.08  Aligned_cols=114  Identities=15%  Similarity=0.186  Sum_probs=105.6

Q ss_pred             ccccccccEEEECCeeEEEEEeeEecCCCCccc-EEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcE
Q psy17065         24 CSALRKNGFVMLKARPCKIVDMSTSKTGKHGHA-KVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL  102 (150)
Q Consensus        24 ~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A-~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~  102 (150)
                      +++||+|++|+++|+||.|++++|+|||++|+| ++|+|+|||.||+++++||+|+++++.++++++++||||.| ++.|
T Consensus         2 ~~~lk~G~~i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~d-g~~~   80 (186)
T TIGR02178         2 ASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKD-GEEY   80 (186)
T ss_pred             cccccCCCEEEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeC-CCeE
Confidence            789999999999999999999999999885655 89999999999999999999999999999999999999999 6679


Q ss_pred             EEec-CCCceeeeeecChhhHHHHHHhhccCCCe-EEEEEec
Q psy17065        103 SLMG-DNGELREDLKLPEGELGAQLRSDYDAGKE-LLVSFIF  142 (150)
Q Consensus       103 ~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~-v~v~~~~  142 (150)
                      +||| +|||   |+.||++.||++ ..||+||+. |.|++..
T Consensus        81 ~FMD~etyE---Q~~i~~~~lgd~-~~fL~e~~~~v~v~~~~  118 (186)
T TIGR02178        81 VFMDEEDYT---PYTFDKDAIEDE-LLFISEGLSGMYVQLID  118 (186)
T ss_pred             EEccCCCcE---EEEeCHHHhhhh-hhhhhCCCEEEEEEEEC
Confidence            9999 7755   789999999997 889999996 9988763

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>PRK00529 elongation factor P; Validated

Probab=100.00  E-value=9.8e-35  Score=229.57  Aligned_cols=116  Identities=20%  Similarity=0.302  Sum_probs=109.1

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG  100 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~  100 (150)
                      |+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++.+|+++++++.|.++++++||||.| ++
T Consensus         1 ~~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~d-gd   78 (186)
T PRK00529          1 MISANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYND-GD   78 (186)
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEEC-CC
Confidence            57899999999999999999999999999999 89999999999999999999999999999999999999999999 55


Q ss_pred             cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065        101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus       101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      .|+||| ||||   |+.||++.|+++ .+||++|+.|.|+++.
T Consensus        79 ~~~fMD~etye---q~~l~~~~lg~~-~~~L~eg~~v~v~~~~  117 (186)
T PRK00529         79 GYVFMDTETYE---QIEVPADQVGDA-AKFLKEGMEVTVVFYN  117 (186)
T ss_pred             EEEEecCCCce---eeEcCHHHhHHH-HhhccCCCEEEEEEEC
Confidence            699999 7755   779999999997 7899999999998864

>TIGR00038 efp translation elongation factor P

Probab=100.00  E-value=2.6e-34  Score=226.87  Aligned_cols=115  Identities=23%  Similarity=0.322  Sum_probs=108.0

Q ss_pred             eeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCc
Q psy17065         22 MQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGY  101 (150)
Q Consensus        22 i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~  101 (150)
                      +++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++++|+++++++.+.++++++||||.| ++.
T Consensus         1 ~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~d-gd~   78 (184)
T TIGR00038         1 ISANDLRKGLVIELDGEPYVVLEFEHVKPGK-GQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKD-GDS   78 (184)
T ss_pred             CchhhccCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEEC-CCE
Confidence            4789999999999999999999999999999 88999999999999999999999999999999999999999999 556


Q ss_pred             EEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065        102 LSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus       102 ~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      |+||| +|||   |+.||++.|++. ..||+||++|.|++..
T Consensus        79 ~~fMD~etye---q~~i~~~~l~~~-~~~L~eg~~v~v~~~~  116 (184)
T TIGR00038        79 YVFMDTETYE---QIELPKDLLGDA-AKFLKENMEVSVTFYN  116 (184)
T ss_pred             EEEeCCCCcc---ceEcCHHHHHHH-HhhcCCCCEEEEEEEC
Confidence            99999 7755   779999999997 8899999999998864

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=99.86  E-value=1.5e-21  Score=128.04  Aligned_cols=58  Identities=28%  Similarity=0.374  Sum_probs=53.4

Q ss_pred             eccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeE
Q psy17065         23 QCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNM   81 (150)
Q Consensus        23 ~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~v   81 (150)
                      +|++||+|++|+++|+||.|++++|++||| |+|++++++|||.||+++|.+|+|+|+|
T Consensus         1 sa~dlr~G~~i~~~g~~~~V~~~~~~k~gk-g~a~v~~klknl~tG~~~e~tf~s~d~v   58 (58)
T PF08207_consen    1 SASDLRKGMVIEIDGEPYVVLDFQHVKPGK-GGAFVRVKLKNLRTGSKVEKTFRSGDKV   58 (58)
T ss_dssp             EGGG--TTSEEEETTEEEEEEEEEEECCTT-SSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred             CHHHccCCCEEEECCEEEEEEEEEEECCCC-CCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence            589999999999999999999999999999 8899999999999999999999999986

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []

Probab=99.65  E-value=9.5e-16  Score=104.07  Aligned_cols=66  Identities=50%  Similarity=0.882  Sum_probs=60.9

Q ss_pred             eEEEEeeEEEEeeCCCcEEEecCCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         85 FVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        85 ~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +|+|++||++.+++++++.+||++|+++|++.||...|+++++..|.+|.++.|++++|||+|.+|
T Consensus         1 ~V~r~eyqli~I~~Dg~lsLMde~get~eDl~lP~~el~~ei~~~~~~g~~~~Vtv~~amG~e~ii   66 (69)
T PF01287_consen    1 IVKRKEYQLIDIDGDGFLSLMDEDGETREDLKLPDGELGEEIKAKFEEGKEVLVTVLSAMGEEKII   66 (69)
T ss_dssp             -EEEEEEEEEEEETTTEEEEEETTS-EEEEEECCSHHHHHHHHHHHHTTCEEEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEEEEccCcEEEEEcCCCCeeccEEecccchhHHHHhhccCCCeEEEEEEeeCCcEEEE
Confidence            479999999999977799999999999999999999999999999999999999999999999875

Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.

>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

Probab=99.57  E-value=5.2e-15  Score=100.44  Aligned_cols=64  Identities=55%  Similarity=0.928  Sum_probs=60.7

Q ss_pred             EEEEeeEEEEeeCCCcEEEecCCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         86 VKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      |.|++||+++++ ++|+++|+++|+++|++.||.+.|+.+|+..|.+|.++.|+|++|||+|.+|
T Consensus         1 V~R~eYqLidI~-dGflsLm~e~G~~k~DlklP~~elg~~I~~~f~~gk~~~vtV~samGeE~~i   64 (69)
T cd04468           1 VKRTEYQLIDID-DGFLSLMDDDGETREDLKLPEGELGKEIREKFDEGKDVLVTVLSAMGEEQAV   64 (69)
T ss_pred             CcceeEEEEeec-CCeEEEEcCCCCcccCCcCCcHHHHHHHHHHHhCCCcEEEEEEccCCcEeeE
Confidence            468999999999 5999999999999999999999999999999999999999999999999875

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.51  E-value=2.9e-14  Score=94.35  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=45.1

Q ss_pred             EEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065         87 KREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus        87 ~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      +++++||||.| |+.|+||| +|||   |+.||++.+|++ .+||+||+.|.|++..
T Consensus         1 e~~~~qylY~d-g~~~~FMd~etye---Q~~i~~~~igd~-~~~L~e~~~v~v~~~~   52 (61)
T cd04470           1 EEREMQYLYKD-GDNYVFMDTETYE---QIELPKEALGDA-AKFLKEGMEVIVLFYN   52 (61)
T ss_pred             CCceEEEEEeC-CCEEEEeCCCCce---EEEECHHHhhhH-HhhCcCCCEEEEEEEC
Confidence            47899999999 66799999 7754   889999999997 8899999999998864

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []

Probab=99.49  E-value=3.7e-14  Score=92.03  Aligned_cols=50  Identities=22%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             EEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065         88 REDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus        88 ~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      +|++||||.| ++.|+||| +|||   |+.||++.+|++ .+||+||+.|.|++..
T Consensus         1 ~r~~qylY~d-gd~~~FMd~etye---Qi~v~~~~~g~~-~~~L~eg~~v~v~~~~   51 (55)
T PF01132_consen    1 RREMQYLYKD-GDNYVFMDTETYE---QIEVPKDQLGDA-LKFLKEGMEVQVLFYE   51 (55)
T ss_dssp             EEEEEEEEEE-SSEEEEEETTT-----EEEEEHHHHTTT-GCC--TTEEEEEEEET
T ss_pred             CceEEEEEeC-CCEEEEecCCCce---EEEecHHHhChH-HhhCcCCCEEEEEEEC
Confidence            6899999999 66699999 8855   889999999987 8999999999998864

Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.

>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain

Probab=99.39  E-value=9.7e-13  Score=90.64  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=58.3

Q ss_pred             EEeeEEEEeeCCCcEEEecCCCceeeeeecC-hhhHHHHHHhhccCCC-eEEEEEecccceeeeC
Q psy17065         88 REDYQLTDISDDGYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGK-ELLVSFIFLLLFRYCI  150 (150)
Q Consensus        88 ~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~-~~~lgd~~~~~l~eg~-~v~v~~~~~~g~~~~~  150 (150)
                      .++||+++++ ++++.+||++|++++++.|| .+.|+.+|+.-|.+|. ++.|+|++|||+|.+|
T Consensus         2 ~~eYqLidI~-DG~lsLM~e~G~~kdDl~lP~~~~l~~~I~~~f~~gk~~v~VtVlsAmGeE~iv   65 (75)
T cd04469           2 FKQYRVLDIQ-DGSIVAMTETGDVKQGLPVIDQSNLWTRLKTAFESGRGSVRVLVVNDGGRELVV   65 (75)
T ss_pred             ceEEEEEEec-CCeEEEEcCCCCcccCccCCCcchHHHHHHHHHHCCCCcEEEEEEccCCeEeEE
Confidence            3689999995 89999999999999999999 8999999999999999 9999999999999875

Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.

>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain

Probab=99.20  E-value=3.8e-11  Score=77.23  Aligned_cols=52  Identities=17%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             EeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceee
Q psy17065         89 EDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRY  148 (150)
Q Consensus        89 ~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~  148 (150)
                      |++||||.| ++.++||| +|||   |+.+|++.+ +. ..||++|+.|.|.+.  .|+..
T Consensus         1 ~~~qylY~d-g~~~~fMd~etye---q~~v~~~~~-~~-~~~l~eg~~v~v~~~--~g~~i   53 (55)
T cd04463           1 RELQVLDIQ-GSKPVTMDLETYE---VVQVPPPVD-QS-FESFEPGEVVLVDTR--TGQYV   53 (55)
T ss_pred             CCEEEEEcC-CCEeEEecCCCce---EEEeCHHHh-hH-HhhCCCCCEEEEEEE--CCEEE
Confidence            579999999 77899999 7866   679999875 44 889999999888754  56543

The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.

>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain

Probab=98.40  E-value=7.9e-07  Score=58.32  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=43.7

Q ss_pred             EEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceee
Q psy17065         86 VKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRY  148 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~  148 (150)
                      ++||..|.++.+ ++.+.+|| |||++| ++.+|.+     ++.-+++|.+|.  ++.+||+.-
T Consensus         1 i~k~~aqVisi~-g~~vQlMD~eTYeT~-ev~~p~~-----~~~~i~~G~eV~--y~~~~g~~k   55 (57)
T cd04467           1 IERKTGQVLSIM-GDVVQLMDLETYETF-EVPIPEE-----IKDKLEPGKEVE--YWESMGKRK   55 (57)
T ss_pred             CcceEEEEEEEc-CCEEEEeccccceeE-EEecchh-----hcccCCCCCEEE--EEeecCeEe
Confidence            579999999999 66799999 999988 7777722     234478999877  899999874

aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.01  Score=51.60  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             ccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEe----cce
Q psy17065         10 ETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMD----VPF   85 (150)
Q Consensus        10 ~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve----~~~   85 (150)
                      +.|-.-.-+|+-+-.-+++||++|.++|.++.++..    -|+ |     +.++|+.|++..+.++.-...-+    .+.
T Consensus       230 ~tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~----~~~-~-----~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~  299 (355)
T COG1499         230 FTGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRS----IGK-G-----IVVLDLETGEPVEITWSVYKRNEGKVAVKE  299 (355)
T ss_pred             CCCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEE----ecC-c-----eEEEecccCCccccChhhcccCcceeeecc
Confidence            355555667899999999999999999977766643    344 4     88999999988887764433333    222


Q ss_pred             EEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecc
Q psy17065         86 VKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFL  143 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~  143 (150)
                      =+-+.+.++..+ .+...||| +|||.+   .+...        -+.+|.+|.+..+..
T Consensus       300 ~~~~~~~vvs~~-~~~~~v~d~et~e~~---~~~~~--------~~~~g~~v~v~~~~~  346 (355)
T COG1499         300 PRLKKAVVVSRD-PSAIQVLDPETYEAR---TVKGP--------SLEEGDEVKVFKVRG  346 (355)
T ss_pred             ccceEEEEEecC-CCceEEEecceEEEE---eccCC--------CCCCCCEEEEEEEec
Confidence            222567777777 55689999 887765   44322        356888887766643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
3er0_A	167	Crystal Structure Of The Full Length Eif5a From Sac		3e-53
3cpf_A	138	Crystal Structure Of Human Eukaryotic Translation I		2e-52
3hks_A	167	Crystal Structure Of Eukaryotic Translation Initiat		1e-40
1x6o_A	174	Structural Analysis Of Leishmania Braziliensis Euka		6e-34
1xtd_A	174	Structural Analysis Of Leishmania Mexicana Eukaryot		2e-33
1eif_A	135	Eukaryotic Translation Initiation Factor 5a From Me		7e-13
2eif_A	136	Eukaryotic Translation Initiation Factor 5a From Me		8e-13
1bkb_A	136	Initiation Factor 5a From Archebacterium Pyrobaculu		3e-10
1iz6_A	138	Crystal Structure Of Translation Initiation Factor		3e-10
1khi_A	176	Crystal Structure Of Hex1 Length = 176		3e-07

>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From Saccharomyces Cerevisiae Length = 167

Iteration: 1
 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 117/137 (85%), Gaps = 1/137 (0%)
Query: 5   EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
           E+  FET D+G+S TYPMQCSALRKNGFV++K+RPCKIVDMSTSKTGKHGHAKVH+V +D
Sbjct: 14  EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAID 73
Query: 65  IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
           IF+GKK ED+ PSTHNM+VP VKR +YQL DI DDG+LSLM  +G+ ++D+K PEGELG 
Sbjct: 74  IFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGELGD 132
Query: 125 QLRSDYDAGKELLVSFI 141
            L++ +D GK+L+V+ I
Sbjct: 133 SLQTAFDEGKDLMVTII 149

>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138

Iteration: 1
 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Query: 16  ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC 75
            S T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+GKKYEDIC
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60
Query: 76  PSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE 135
           PSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG ++   YD G+E
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE 119
Query: 136 LLVSFI 141
           +L++ +
Sbjct: 120 ILITVL 125

>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167

Iteration: 1
 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Query: 9   FETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSG 68
           FE  +SGAS TYP     +RK G +++K RPCK+V++STSKTGKHGHAK H V +DIF+ 
Sbjct: 16  FEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTA 75
Query: 69  KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGE-LGAQLR 127
           KK EDI PS+HN DVP V R DYQL DI++DG++SL+ D+G  ++DLKLP  + L AQ+R
Sbjct: 76  KKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMR 135
Query: 128 SDYDAGKELLVSFI 141
             +D GK+++VS +
Sbjct: 136 LGFDEGKDIVVSVM 149

>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  139 bits (350), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 93/143 (65%), Gaps = 7/143 (4%)
Query: 6   DAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDI 65
           D   + G   AS TYP+   AL+K G+V +  RPCK++D+S SKTGKHGHAKV +V  DI
Sbjct: 15  DFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDI 74
Query: 66  FSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELREDLKL-P 118
           F+G + ED  PSTHN++VPFVK   Y + DI  +       +LSLM D GE REDL + P
Sbjct: 75  FTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPP 134
Query: 119 EGELGAQLRSDYDAGKELLVSFI 141
           +  L  Q++  +D+GK++LV  +
Sbjct: 135 DPALATQIKEQFDSGKDVLVVVV 157

>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
Query: 7   AHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIF 66
           AH   GD+ AS TYP    AL+K G+V +  RPCK++D+S SKTGKHGHAKV +V  DIF
Sbjct: 17  AHQGGGDN-ASKTYPXAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIF 75
Query: 67  SGKKYEDICPSTHNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELREDLKL-PE 119
           +G + ED  PSTHN++VPFVK   Y + DI  +       +LSL  D GE REDL   P+
Sbjct: 76  TGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPSHLSLXDDEGESREDLDXPPD 135
Query: 120 GELGAQLRSDYDAGKELLVSFI 141
             L  Q++  +D+GKE+LV  +
Sbjct: 136 AALATQIKEQFDSGKEVLVVVV 157

>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 19  TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
           T  +   +L+   +VM+   PC+IVD+S SK GKHG AK  +VG+ IF   K E + P++
Sbjct: 7   TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 66
Query: 79  HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELRE-------DLKLPEG 120
             ++VP + R   Q+        L++MGD  ++ +       +L +PEG
Sbjct: 67  SKVEVPIIDRRKGQV--------LAIMGDMVQIMDLQTYETLELPIPEG 107

>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 19  TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
           T  +   +L+   +VM+   PC+IVD+S SK GKHG AK  +VG+ IF   K E + P++
Sbjct: 8   TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67
Query: 79  HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELRE-------DLKLPEG 120
             ++VP + R   Q+        L++MGD  ++ +       +L +PEG
Sbjct: 68  SKVEVPIIDRRKGQV--------LAIMGDMVQIMDLQTYETLELPIPEG 108

>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 17 STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
          ST Y ++   L++  +V++   PC++V++  SKTGKHG AK  +V + +F G K     P
Sbjct: 5  STKY-VEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLP 63
Query: 77 STHNMDVPFVKREDYQLTDISDD 99
              ++VP +++   Q+  +S D
Sbjct: 64 VDAQVEVPIIEKFTAQILSVSGD 86

>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 22 MQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNM 81
          +Q S L+   ++++   PC+IV+++ S  GKHG AK  +  + IF GK    + P++  +
Sbjct: 7  VQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEV 66
Query: 82 DVPFVKREDYQLTDISDD 99
          DVP + ++  Q+  I+ D
Sbjct: 67 DVPIIDKKTAQVIAITPD 84

>pdb|1KHI|A Chain A, Crystal Structure Of Hex1 Length = 176

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 11  TGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGK 69
           TG   AS T  + C  +R    ++L+ RPC+++ +STS  TG+H +     +G+D+F+ +
Sbjct: 24  TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQ 78
Query: 70  KYE------DICPS--THNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLK-LPEG 120
            +E      +  PS     M  P  K+  Y++ D+  DG +  M + G+++++L  + + 
Sbjct: 79  LHEESSFVSNPAPSVVVQTMLGPVFKQ--YRVLDM-QDGSIVAMTETGDVKQNLPVIDQS 135
Query: 121 ELGAQLRSDYDAGK 134
            L  +L+  +++G+
Sbjct: 136 SLWNRLQKAFESGR 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	1e-57
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	5e-55
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	1e-53
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	2e-51
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	3e-50
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	1e-46
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	3e-45
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	1e-43

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167

 Score =  176 bits (447), Expect = 1e-57
 Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M D ++ HFE  +SGAS TYP     +RK G +++K RPCK+V++STSKTGKHGHAK H 
Sbjct: 9   MSD-DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 67

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           V +DIF+ KK EDI PS+HN DVP V R DYQL DI++DG++SL+ D+G  ++DLKLP  
Sbjct: 68  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 127

Query: 121 E-LGAQLRSDYDAGKELLVSFI 141
           + L AQ+R  +D GK+++VS +
Sbjct: 128 DGLTAQMRLGFDEGKDIVVSVM 149

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174

 Score =  169 bits (429), Expect = 5e-55
 Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 8/149 (5%)

Query: 1   MGDIE-DAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVH 59
           M D + D   + G   AS TYP+   AL+K G+V +  RPCK++D+S SKTGKHGHAKV 
Sbjct: 9   MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68

Query: 60  MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISD------DGYLSLMGDNGELRE 113
           +V  DIF+G + ED  PSTHN++VPFVK   Y + DI          +LSLM D GE RE
Sbjct: 69  IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE 128

Query: 114 DLKL-PEGELGAQLRSDYDAGKELLVSFI 141
           DL + P+  L  Q++  +D+GK++LV  +
Sbjct: 129 DLDMPPDPALATQIKEQFDSGKDVLVVVV 157

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167

 Score =  166 bits (420), Expect = 1e-53
 Identities = 95/141 (67%), Positives = 119/141 (84%), Gaps = 2/141 (1%)

Query: 1   MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
           M D E+  FET D+G+S TYPMQCSALRKNGFV++K+RPCKIVDMSTSKTGKHGHAKVH+
Sbjct: 11  MSD-EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69

Query: 61  VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
           V +DIF+GKK ED+ PSTHNM+VP VKR +YQL DI DDG+LSLM  +G+ ++D+K PEG
Sbjct: 70  VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEG 128

Query: 121 ELGAQLRSDYDAGKELLVSFI 141
           ELG  L++ +D GK+L+V+ I
Sbjct: 129 ELGDSLQTAFDEGKDLMVTII 149

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138

 Score =  159 bits (403), Expect = 2e-51
 Identities = 90/126 (71%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 16  ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC 75
            S T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+GKKYEDIC
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60

Query: 76  PSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE 135
           PSTHNMDVP +KR D+QL  I  DGYLSL+ D+GE+REDL+LPEG+LG ++   YD G+E
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE 119

Query: 136 LLVSFI 141
           +L++ +
Sbjct: 120 ILITVL 125

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176

 Score =  157 bits (399), Expect = 3e-50
 Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 3   DIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMV 61
               A   TG   AS T  + C  +R    ++L+ RPC+++ +STS  TG+H +  V   
Sbjct: 16  AAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLGV--- 72

Query: 62  GLDIFSGKKYEDI------CPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDL 115
             D+F+ + +E+        PS     +     + Y++ D+  DG +  M + G+++++L
Sbjct: 73  --DLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDM-QDGSIVAMTETGDVKQNL 129

Query: 116 KL-PEGELGAQLRSDYDAGKELLV 138
            +  +  L  +L+  +++G+  + 
Sbjct: 130 PVIDQSSLWNRLQKAFESGRGSVR 153

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score =  146 bits (371), Expect = 1e-46
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 19  TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
           T  ++   L++  +V++   PC++V++  SKTGKHG AK  +V + +F G K     P  
Sbjct: 6   TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79  HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLV 138
             ++VP +++   Q+  +     + LM  +    + +++P   +  + +     G E+ V
Sbjct: 66  AQVEVPIIEKFTAQILSV-SGDVIQLM--DMRDYKTIEVPMKYVEEEAKGRLAPGAEVEV 122

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score =  143 bits (363), Expect = 3e-45
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 17  STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
                +Q S L+   ++++   PC+IV+++ S  GKHG AK  +  + IF GK    + P
Sbjct: 2   GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61

Query: 77  STHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGKE 135
           ++  +DVP + ++  Q+  I+ D    +M  + E  E  ++P +  +  ++R     G  
Sbjct: 62  TSAEVDVPIIDKKTAQVIAITPDTV-QIM--DMETYETFEVPIDTGVADEIRDQLKEGIN 118

Query: 136 LLV 138
           +  
Sbjct: 119 VEY 121

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score =  139 bits (353), Expect = 1e-43
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 17  STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
             T  +   +L+   +VM+   PC+IVD+S SK GKHG AK  +VG+ IF   K E + P
Sbjct: 6   PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65

Query: 77  STHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYD----A 132
           ++  ++VP + R   Q+  I     + +M        +L +PEG  G +   + +     
Sbjct: 66  TSSKVEVPIIDRRKGQVLAI-MGDMVQIMDLQTYETLELPIPEGIEGLEPGGEVEYIEAV 124

Query: 133 GKELLVS 139
           G+  +  
Sbjct: 125 GQYKITR 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	100.0
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	100.0
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	100.0
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	100.0
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	100.0
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	100.0
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	100.0
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	100.0
1yby_A	215	Translation elongation factor P; conserved hypothe	100.0
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	100.0
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	100.0

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=100.00  E-value=6.5e-53  Score=327.53  Aligned_cols=148  Identities=53%  Similarity=0.868  Sum_probs=128.1

Q ss_pred             CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065          1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN   80 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~   80 (150)
                      |||+| |+|++++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++
T Consensus         9 ~~~~~-~~~~~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k   87 (167)
T 3hks_A            9 MSDDE-HHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN   87 (167)
T ss_dssp             ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred             cCccc-ccccccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence            66654 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecceEEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChh-hHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         81 MDVPFVKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEG-ELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~-~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +++|+|++++|||||+|++++|+||| +||||+ ++.||++ .|+++++.||++|++|.|+++++||+|.+|
T Consensus        88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~-~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~~mg~e~i~  158 (167)
T 3hks_A           88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKD-DLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQIC  158 (167)
T ss_dssp             EEEECCEEEEEEEEEECTTSBEEEECTTSCEEC-CCBCCSCHHHHHHHHHHHHTTEEEEEEEEEETTEEEEE
T ss_pred             EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEE-EEecCchHHHHHHHHHHhhCCCEEEEEEEeeCCeEEEE
Confidence            99999999999999998677899999 998876 7899998 999998899999999999999999999874

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-53  Score=327.85  Aligned_cols=148  Identities=64%  Similarity=1.075  Sum_probs=132.7

Q ss_pred             CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065          1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN   80 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~   80 (150)
                      ||| |.|+|++++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++
T Consensus        11 ~~~-~~~~~~~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k   89 (167)
T 3er0_A           11 MSD-EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN   89 (167)
T ss_dssp             ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred             ccc-ccccccccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence            554 7789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +++|+|++++|||||+| |++|+|||++.++|||+.||++.||++++.||++|++|.|+++++||+|.+|
T Consensus        90 ve~~~ver~~~QyLY~d-g~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~~mg~e~i~  158 (167)
T 3er0_A           90 MEVPVVKRNEYQLLDID-DGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAI  158 (167)
T ss_dssp             EEECCCCEEEEECCCCT-TTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEE
T ss_pred             cccceEEEeeEEEEEEc-CCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEhhCCcEEEE
Confidence            99999999999999998 7789999977778999999999999998899999999999999999999874

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=100.00  E-value=1.4e-50  Score=316.17  Aligned_cols=149  Identities=44%  Similarity=0.769  Sum_probs=120.8

Q ss_pred             CCC-ccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCC
Q psy17065          1 MGD-IEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTH   79 (150)
Q Consensus         1 ~~~-~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~   79 (150)
                      ||| +++++|++++|++|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||++
T Consensus         9 ~~~~~~~~~~~~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~   88 (174)
T 1x6o_A            9 MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH   88 (174)
T ss_dssp             ------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred             ccccccccceecCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCC
Confidence            444 3455899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecceEEEEeeEEEEeeCC------CcEEEec-CCCceeeeeecChh-hHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         80 NMDVPFVKREDYQLTDISDD------GYLSLMG-DNGELREDLKLPEG-ELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        80 ~ve~~~v~~~~~qyly~d~~------~~~~fMd-et~e~~Eqi~l~~~-~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      ++++|+|++++|||||+|++      ++|+||| ++|+|+ ++.+|++ .||++|++||++|++|.|+++++||+|.+|
T Consensus        89 kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~-~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~~mG~e~i~  166 (174)
T 1x6o_A           89 NVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE-DLDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTEQVL  166 (174)
T ss_dssp             EEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEEC-CCBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             EEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEE-EeeCCchhhHHHHHHHHhhCCCEEEEEEEeeCCeEEEE
Confidence            99999999999999999955      4999999 888765 5555888 899988899999999999999999999874

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-49  Score=298.93  Aligned_cols=133  Identities=64%  Similarity=1.109  Sum_probs=121.4

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD   95 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly   95 (150)
                      +|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||
T Consensus         1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly   80 (138)
T 3cpf_A            1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG   80 (138)
T ss_dssp             -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred             CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence            57899999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      +| |++|+||| +||||+ ++.||++.||+++++||+||++|.|+++++||+|.+|
T Consensus        81 ~d-g~~~~fMD~etyeq~-~l~l~~~~lgd~~~~~l~eg~~v~V~~~~~~g~e~~~  134 (138)
T 3cpf_A           81 IQ-DGYLSLLQDSGEVRE-DLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAV  134 (138)
T ss_dssp             EE-TTEEEEECTTSCEEC-CSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEE
T ss_pred             ec-CCEEEEEcCCCCeEe-eecCCHHHHHHHHHHHhhCCCEEEEEEEhhCCcEEEE
Confidence            99 88899999 887755 5558999999996699999999999999999999864

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=2.6e-45  Score=277.08  Aligned_cols=130  Identities=24%  Similarity=0.436  Sum_probs=119.6

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD   95 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly   95 (150)
                      +|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||
T Consensus         1 ~~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY   80 (138)
T 1iz6_A            1 MGDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIA   80 (138)
T ss_dssp             -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred             CCceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      .| |++|+||| +||||+ ++.+|++.||+. ..||++|+.  |.++++||+|.+|
T Consensus        81 ~d-g~~~~fMD~etyeq~-~l~~~~~~lgd~-~~~l~e~~~--V~v~~~~G~~~i~  131 (138)
T 1iz6_A           81 IT-PDTVQIMDMETYETF-EVPIDTGVADEI-RDQLKEGIN--VEYWETLGRIKIM  131 (138)
T ss_dssp             EC-SSEEEEECTTTCCEE-EEEHHHHBCGGG-TTTCCTTCE--EEEEEETTEEEEE
T ss_pred             eC-CCEEEEEeCCCCceE-EeeCCHHHHHHH-HHhCCCCCE--EEEEEECCcEEEE
Confidence            99 77899999 998866 555599999985 899999876  5667899998764

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=1.9e-43  Score=266.05  Aligned_cols=125  Identities=25%  Similarity=0.452  Sum_probs=116.1

Q ss_pred             eeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeC
Q psy17065         19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISD   98 (150)
Q Consensus        19 t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~   98 (150)
                      |+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||.| 
T Consensus         6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~d-   84 (136)
T 1bkb_A            6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVS-   84 (136)
T ss_dssp             CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEEC-
T ss_pred             EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEec-
Confidence            9999999999999999999999999999999999989999999999999999999999999999999999999999999 


Q ss_pred             CCcEEEec-CCCceeeeeecChhh-HHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         99 DGYLSLMG-DNGELREDLKLPEGE-LGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        99 ~~~~~fMd-et~e~~Eqi~l~~~~-lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      |++|+||| +|||   |+.||.+. +|+. .+||+||+.|  .++.++|++.+|
T Consensus        85 g~~~~fMD~etye---q~~l~~~~~~gd~-~~~l~e~~~v--~v~~~~g~~~~~  132 (136)
T 1bkb_A           85 GDVIQLMDMRDYK---TIEVPMKYVEEEA-KGRLAPGAEV--EVWQILDRYKII  132 (136)
T ss_dssp             SSEEEEEETTTCC---EEEEEGGGBCHHH-HTTCCTTCEE--EEEEETTEEEEE
T ss_pred             CCEEEEEeCCCCe---EEEeccccchhHH-HhhCCCCCEE--EEEEECCEEEEE
Confidence            77899999 8876   66999888 9986 8899998865  456678988764

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=100.00  E-value=2.2e-41  Score=254.96  Aligned_cols=125  Identities=30%  Similarity=0.479  Sum_probs=113.1

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD   95 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly   95 (150)
                      +|.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++++.|+++++++||||
T Consensus         5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly   84 (136)
T 2eif_A            5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA   84 (136)
T ss_dssp             CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred             EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence            46699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      .| +++|+||| |||||+   .||.+  ++. .+ |++|+.  |.++.+||+|.++
T Consensus        85 ~d-g~~~~fMD~etyeq~---~l~~~--gd~-~~-l~e~~~--v~v~~~~G~~~i~  130 (136)
T 2eif_A           85 IM-GDMVQIMDLQTYETL---ELPIP--EGI-EG-LEPGGE--VEYIEAVGQYKIT  130 (136)
T ss_dssp             EE-TTEEEEEETTTCCEE---EEECC--SCC-TT-CSTTCE--EEEEEETTEEEEE
T ss_pred             ec-CCEEEEEeCCCceEE---EecCC--Cch-hh-CCCCCE--EEEEEECCEEEEE
Confidence            99 77899999 887754   66655  665 67 999876  5567789998764

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=100.00  E-value=7.7e-40  Score=258.83  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             eeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC
Q psy17065         20 YPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD   99 (150)
Q Consensus        20 ~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~   99 (150)
                      +++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|++++|||||.| |
T Consensus         5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d-g   82 (191)
T 3a5z_B            5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND-G   82 (191)
T ss_dssp             -CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEEC-S
T ss_pred             ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeC-C
Confidence            678999999999999999999999999999999 99999999999999999999999999999999999999999999 5


Q ss_pred             CcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065        100 GYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI  141 (150)
Q Consensus       100 ~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~  141 (150)
                      +.|+||| ||||   |+.||++.||++ .+||+||++|.|++.
T Consensus        83 d~~~FMD~etye---Q~~l~~~~lgd~-~~~l~e~~~v~v~~~  121 (191)
T 3a5z_B           83 EFWHFMNNETFE---QLSADAKAIGDN-AKWLLDQAECIVTLW  121 (191)
T ss_dssp             SCEEEECTTTCC---EEEECHHHHCTT-TTTCCSSEECEEEEE
T ss_pred             CEEEEeeCCCCe---EEEccHHHhhhH-HhhcCCCCEEEEEEE
Confidence            6689999 7866   779999999997 889999999999887

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=100.00  E-value=2.3e-39  Score=254.73  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=106.8

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG  100 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~  100 (150)
                      |+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|++++|||||.| |+
T Consensus         1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d-gd   78 (184)
T 1ueb_A            1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPE-GE   78 (184)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEE-TT
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeC-CC
Confidence            58999999999999999999999999999999 99999999999999999999999999999999999999999999 66


Q ss_pred             cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065        101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI  141 (150)
Q Consensus       101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~  141 (150)
                      .|+||| ||||   |+.||++.||++  +||+||++|.|+++
T Consensus        79 ~~~FMD~etye---q~~l~~~~lgd~--~~L~eg~~v~v~~~  115 (184)
T 1ueb_A           79 EMVFMDLETYE---QFAVPRSRVVGA--EFFKEGMTALGDMY  115 (184)
T ss_dssp             EEEEEETTTCC---EEEEEGGGBTTG--GGCCTTCEEEEEEE
T ss_pred             EEEEeeCCCce---eEEcCHHHcChh--hhcCCCCEEEEEEE
Confidence            789999 7766   779999999986  89999999766655

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=100.00  E-value=7.3e-39  Score=253.21  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=110.6

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG  100 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~  100 (150)
                      |+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+++++++||||.| ++
T Consensus         6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd   83 (191)
T 3tre_A            6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYND-GE   83 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEEC-SS
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEc-CC
Confidence            79999999999999999999999999999999 99999999999999999999999999999999999999999999 66


Q ss_pred             cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065        101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus       101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      .|+||| ||||   |+.||++.||++ .+||+||+.|.|++..
T Consensus        84 ~~~FMD~etyE---q~~l~~~~lgd~-~~~L~eg~~v~v~~~~  122 (191)
T 3tre_A           84 FWHFMTSENYE---QHAASKEAVAEA-KQWLKEEALCMVTMWN  122 (191)
T ss_dssp             CEEEEESSSCC---EEEECHHHHGGG-GGGCCTTCEEEEEEET
T ss_pred             cEEEccCCchH---heecchhHhhhH-HhhCCCCCEEEEEEEC
Confidence            799999 8765   779999999997 8899999999999874

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=100.00  E-value=6.9e-39  Score=257.33  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=107.7

Q ss_pred             eeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEee
Q psy17065         18 TTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDIS   97 (150)
Q Consensus        18 ~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d   97 (150)
                      -..|+++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+|++++|||||.|
T Consensus        28 rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~D  106 (215)
T 1yby_A           28 AGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND  106 (215)
T ss_dssp             ---CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEE
T ss_pred             CCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeC
Confidence            34679999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065         98 DDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI  141 (150)
Q Consensus        98 ~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~  141 (150)
                       ++.|+||| ||||   |+.||++.||++ .+||+||++|.|++.
T Consensus       107 -gd~y~FMD~ETyE---Qi~l~~~~lgd~-~~fLkEg~~v~v~~~  146 (215)
T 1yby_A          107 -GDLYYFMDTETFE---QLPLGKDKIGDA-LKFVKENEIVKVLSH  146 (215)
T ss_dssp             -TTEEEEECTTTCC---EEEEEHHHHTTT-TTTCCTTCEEEEEEE
T ss_pred             -CCEEEEccCCCCe---eEEecHHHhhhH-HhhCCCCCEEEEEEE
Confidence             66799999 8866   779999999997 889999999888877

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.5e-38  Score=247.80  Aligned_cols=116  Identities=14%  Similarity=0.216  Sum_probs=109.5

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG  100 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~  100 (150)
                      |+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+++++++||||.| ++
T Consensus         4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd   81 (191)
T 3oyy_A            4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFA-DP   81 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEEC-SS
T ss_pred             cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEec-CC
Confidence            78999999999999999999999999999999 56999999999999999999999999999999999999999999 66


Q ss_pred             cEEEecCCCceeeeeecChhhHHHHHHhhccCCCe--EEEEEec
Q psy17065        101 YLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE--LLVSFIF  142 (150)
Q Consensus       101 ~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~--v~v~~~~  142 (150)
                      .|+|||||   |||+.||++.+|++ .+||+||++  |.|++..
T Consensus        82 ~~~FMDet---yEq~~l~~~~lgd~-~~~L~eg~~~~v~v~~~~  121 (191)
T 3oyy_A           82 LYVFMDSE---FNQYEIEKDDLEGV-LTFIEDGMTDICEAVFYN  121 (191)
T ss_dssp             SEEEEETT---CCEEEECGGGCTTT-GGGCCTTCCCCEEEEEET
T ss_pred             EEEEEecC---hhheeCChHHhhhH-HhhCcCCCEeEEEEEEEC
Confidence            79999955   55889999999997 889999999  9999874

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=1.7e-33  Score=219.20  Aligned_cols=133  Identities=26%  Similarity=0.525  Sum_probs=122.2

Q ss_pred             ccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEcccCcEEEEeecCC--------Ce
Q psy17065         10 ETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGKKYEDICPST--------HN   80 (150)
Q Consensus        10 ~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~-kpGKhG~A~v~~k~knl~TG~~~e~t~~s~--------~~   80 (150)
                      ..++|++|.|+|++++.||+|.+|+|+|+||+|++++++ |||||     |+.+.|||||+++|...+++        ++
T Consensus        23 ~~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hn   97 (176)
T 1khi_A           23 GTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQT   97 (176)
T ss_dssp             ----CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEE
T ss_pred             CCCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCcccccce
Confidence            368999999999999999999999999999999999999 89999     89999999999999999998        89


Q ss_pred             EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecCh-hhHHHHHHhhccCCCe-EEEEEecccceeeeC
Q psy17065         81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPE-GELGAQLRSDYDAGKE-LLVSFIFLLLFRYCI  150 (150)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~-~~lgd~~~~~l~eg~~-v~v~~~~~~g~~~~~  150 (150)
                      +++|+|+  +||+|.++ ++++.+||+++++.+++.||+ ..|+++++..|.+|.+ +.|+++++||+|.+|
T Consensus        98 m~VPvVk--~yQlldI~-dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~iv  166 (176)
T 1khi_A           98 MLGPVFK--QYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAV  166 (176)
T ss_dssp             EEEECCE--EEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEE
T ss_pred             eccceeE--EEEEEEEc-CCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEEEE
Confidence            9999996  99999998 899999997788899999997 7899999999999988 559999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1x6oa1	68	b.34.5.2 (A:19-86) Eukaryotic initiation translati	4e-41
d1khia1	76	b.34.5.2 (A:27-102) Woronin body major protein (He	2e-33
d2eifa1	73	b.34.5.2 (A:1-73) Eukaryotic initiation translatio	8e-27
d1iz6a1	69	b.34.5.2 (A:2-70) Eukaryotic initiation translatio	4e-25
d1bkba1	71	b.34.5.2 (A:4-74) Eukaryotic initiation translatio	2e-24
d1x6oa2	79	b.40.4.5 (A:87-165) C-terminal domain of eukaryoti	1e-20
d1khia2	71	b.40.4.5 (A:103-173) C-terminal domain of eIF5a ho	1e-14

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score =  129 bits (327), Expect = 4e-41
 Identities = 40/67 (59%), Positives = 52/67 (77%)

Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
          TYP+   AL+K G+V +  RPCK++D+S SKTGKHGHAKV +V  DIF+G + ED  PST
Sbjct: 2  TYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 61

Query: 79 HNMDVPF 85
          HN++VPF
Sbjct: 62 HNVEVPF 68

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

 Score =  110 bits (277), Expect = 2e-33
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 15 GASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGKKYED 73
           AS T  + C  +R    ++L+ RPC+++ +STS  TG+H +     +G+D+F+ + +E+
Sbjct: 2  SASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQLHEE 56

Query: 74 ICPSTHNMDVPFVKR 88
              ++      V+ 
Sbjct: 57 SSFVSNPAPSVVVQT 71

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 93.7 bits (233), Expect = 8e-27
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 18 TTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPS 77
           T  +   +L+   +VM+   PC+IVD+S SK GKHG AK  +VG+ IF   K E + P+
Sbjct: 6  GTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPT 65

Query: 78 THNMDVP 84
          +  ++VP
Sbjct: 66 SSKVEVP 72

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 89.0 bits (221), Expect = 4e-25
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
             +Q S L+   ++++   PC+IV+++ S  GKHG AK  +  + IF GK    + P++
Sbjct: 3  KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 62

Query: 79 HNMDVP 84
            +DVP
Sbjct: 63 AEVDVP 68

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 87.2 bits (216), Expect = 2e-24
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
          T  ++   L++  +V++   PC++V++  SKTGKHG AK  +V + +F G K     P  
Sbjct: 6  TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79 HNMDVP 84
            ++VP
Sbjct: 66 AQVEVP 71

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 79

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score = 77.8 bits (192), Expect = 1e-20
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 86  VKREDYQLTDISDD------GYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGKELLV 138
           VK   Y + DI  +       +LSLM D GE REDL +P +  L  Q++  +D+GK++LV
Sbjct: 1   VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLV 60

Query: 139 S 139
            
Sbjct: 61  V 61

>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 10/50 (20%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 89  EDYQLTDISDDGYLSLMGDNGELREDLKL-PEGELGAQLRSDYDAGKELL 137
           + Y++ D+  DG +  M + G+++++L +  +  L  +L+  +++G+  +
Sbjct: 2   KQYRVLDM-QDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSV 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2eifa1	73	Eukaryotic initiation translation factor 5a (eIF5a	99.94
d1bkba1	71	Eukaryotic initiation translation factor 5a (eIF5a	99.93
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	99.93
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	99.91
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	99.89
d1khia1	76	Woronin body major protein (Hex1) {Filamentous fun	99.78
d1khia2	71	C-terminal domain of eIF5a homologue (Hex1) {Filam	99.52
d1ueba2	63	Elongation factor P middle and C-terminal domains	99.5
d1x6oa2	79	C-terminal domain of eukaryotic initiation transla	99.49
d2eifa2	59	C-terminal domain of eukaryotic initiation transla	98.08
d1iz6a2	67	C-terminal domain of eukaryotic initiation transla	98.02
d1bkba2	65	C-terminal domain of eukaryotic initiation transla	97.89

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=5.6e-27  Score=158.01  Aligned_cols=70  Identities=39%  Similarity=0.694  Sum_probs=67.9

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecce
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPF   85 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~   85 (150)
                      ++.|.++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+|++|+|.
T Consensus         4 m~~~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevPi   73 (73)
T d2eifa1           4 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPI   73 (73)
T ss_dssp             CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEEC
T ss_pred             eccceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEeccC
Confidence            5679999999999999999999999999999999999999999999999999999999999999999984

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.93  E-value=1.7e-26  Score=154.82  Aligned_cols=69  Identities=32%  Similarity=0.653  Sum_probs=66.4

Q ss_pred             cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecc
Q psy17065         16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVP   84 (150)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~   84 (150)
                      .+.|.+|++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+|+||+|
T Consensus         3 ~m~~~~i~a~~lKkG~~i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP   71 (71)
T d1bkba1           3 VMSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             CCCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             cceeeEEEHHHccCCCEEEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence            345788999999999999999999999999999999999999999999999999999999999999987

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=6.8e-26  Score=151.06  Aligned_cols=67  Identities=33%  Similarity=0.677  Sum_probs=65.2

Q ss_pred             eeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecce
Q psy17065         19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPF   85 (150)
Q Consensus        19 t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~   85 (150)
                      +.+|++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+|++|+|.
T Consensus         3 ~~~i~~~~lkkG~~i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP~   69 (69)
T d1iz6a1           3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPI   69 (69)
T ss_dssp             EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             cEEEEHhHccCCCEEEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEeccC
Confidence            6789999999999999999999999999999999999999999999999999999999999999984

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.91  E-value=2.5e-24  Score=142.91  Aligned_cols=68  Identities=59%  Similarity=1.098  Sum_probs=62.2

Q ss_pred             eeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecce
Q psy17065         18 TTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPF   85 (150)
Q Consensus        18 ~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~   85 (150)
                      .|+|+++++||+|.|++++|+||+|++++++||||||+|++|+.+.+||||++++...|+++++++|.
T Consensus         1 ~T~p~~~~~lkkG~yv~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP~   68 (68)
T d1x6oa1           1 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF   68 (68)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             CceeeEcceeeECCEEEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999984

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.89  E-value=1.3e-23  Score=137.63  Aligned_cols=63  Identities=21%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecc
Q psy17065         21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVP   84 (150)
Q Consensus        21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~   84 (150)
                      |+++++||+|++|+++|+||.|++++|+|||| |+|++++|+|||.||+++|.+|+|+|++|.+
T Consensus         1 Mi~a~elkkG~~i~~~g~~~~V~~~~~~kpgk-g~a~v~~Klknl~tG~~~e~tf~~~dkve~V   63 (63)
T d1ueba1           1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             CCcHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence            68999999999999999999999999999999 7899999999999999999999999999864

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=99.78  E-value=3.2e-19  Score=119.62  Aligned_cols=73  Identities=27%  Similarity=0.497  Sum_probs=68.1

Q ss_pred             CCcceeeeeeccccccccEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEee
Q psy17065         14 SGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDY   91 (150)
Q Consensus        14 ~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~-kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~   91 (150)
                      |++|.|+|+++++||+|.+++|+|+||+|++++++ |||||     ++.+.|||||+++|...+.++....|.+++.--
T Consensus         1 a~as~T~p~~~~~lkkg~yv~i~g~PCkIv~istS~ktGKH-----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g   74 (76)
T d1khia1           1 GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLG   74 (76)
T ss_dssp             CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEE
T ss_pred             CCCCcceeEEccceeeCCEEEECCcccEEEEEeeccCCCce-----eEEEEeeccCcEeeecccccCCCCceeeeeeec
Confidence            68999999999999999999999999999999998 99999     489999999999999999999999999887643

>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=99.52  E-value=1.6e-14  Score=95.82  Aligned_cols=61  Identities=18%  Similarity=0.415  Sum_probs=57.2

Q ss_pred             EeeEEEEeeCCCcEEEecCCCceeeeeec-ChhhHHHHHHhhccCCCe-EEEEEecccceeeeC
Q psy17065         89 EDYQLTDISDDGYLSLMGDNGELREDLKL-PEGELGAQLRSDYDAGKE-LLVSFIFLLLFRYCI  150 (150)
Q Consensus        89 ~~~qyly~d~~~~~~fMdet~e~~Eqi~l-~~~~lgd~~~~~l~eg~~-v~v~~~~~~g~~~~~  150 (150)
                      |+||+++++ ++++++||++|+++|++.| |++.|+.+|+..|.+|.. |.|+|++|||+|.+|
T Consensus         2 keYqlidId-DG~lsLM~e~G~~keDlkv~~~~el~~~I~~~F~~gkd~v~VtV~samGeE~~v   64 (71)
T d1khia2           2 KQYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAV   64 (71)
T ss_dssp             EEEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEE
T ss_pred             ceEEEEEee-CCeEEEEcCCCCccccccCCChhHHHHHHHHHHHcCCCcEEEEEEccCCEEeEE
Confidence            799999998 8999999999999999997 678999999999999986 889999999999885

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.50  E-value=1.3e-14  Score=94.26  Aligned_cols=52  Identities=13%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             eEEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065         85 FVKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF  142 (150)
Q Consensus        85 ~v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~  142 (150)
                      +|++|++||||.| ++.|+||| +|||   |+.|+++.+|+.  +||++|+.|.|.+..
T Consensus         1 ~ve~~~~qyLY~d-gd~~~FMd~etyE---Qi~v~~~~i~~~--~~L~eg~~~~v~~~~   53 (63)
T d1ueba2           1 YVETRELQYLYPE-GEEMVFMDLETYE---QFAVPRSRVVGA--EFFKEGMTALGDMYE   53 (63)
T ss_dssp             CEEEEEEEEEEEE-TTEEEEEETTTCC---EEEEEGGGBTTG--GGCCTTCEEEEEEET
T ss_pred             CccceeEEEEEeC-CCeEEEEeCCCcc---EEEcCHHHcChh--ccccCCCEEEEEEEC
Confidence            4899999999999 66799999 8866   779999999963  599999999998763

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.49  E-value=3.7e-14  Score=95.70  Aligned_cols=65  Identities=37%  Similarity=0.623  Sum_probs=59.6

Q ss_pred             EEEEeeEEEEeeCC------CcEEEecCCCceeeeeecC-hhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065         86 VKREDYQLTDISDD------GYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGKELLVSFIFLLLFRYCI  150 (150)
Q Consensus        86 v~~~~~qyly~d~~------~~~~fMdet~e~~Eqi~l~-~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~  150 (150)
                      |.|.+||++.++++      +|+.+|+++|+++|++.|| ...|+.+|+..|.+|..+.|+|+||||+|.+|
T Consensus         1 Vkr~eYqlidI~~d~d~s~dGflsLm~d~G~treDlkLP~d~elg~~I~~~f~~gkdl~VtVlsAmGEE~ii   72 (79)
T d1x6oa2           1 VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTEQVL   72 (79)
T ss_dssp             CEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CccceeEEEeeccCCccCCCcEEEEEcCCCCcccccCCCCchHHHHHHHHHHhCCCcEEEEEehhCCcccee
Confidence            46889999999854      6999999999999999997 56899999999999999999999999999875

>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.08  E-value=5.4e-06  Score=52.20  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             EEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceee
Q psy17065         86 VKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRY  148 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~  148 (150)
                      ++|+..|.+.+. |+..++|| +||++| ++++|++ +    .+ |.+|.+|.-  ..+||+.-
T Consensus         1 IeKk~aQVlsi~-G~~vq~MD~etyetf-~l~ipe~-~----~~-l~~G~eVeY--~e~mGr~k   54 (59)
T d2eifa2           1 IDRRKGQVLAIM-GDMVQIMDLQTYETL-ELPIPEG-I----EG-LEPGGEVEY--IEAVGQYK   54 (59)
T ss_dssp             EEEEEEEEEEEE-TTEEEEEETTTCCEE-EEECCSC-C----TT-CSTTCEEEE--EEETTEEE
T ss_pred             CccceeEEEEEc-CCeEEEeeCCcceeE-EEeCcch-h----cc-CCCCCEEEE--eeccCcEE
Confidence            689999999999 77799999 999999 8888844 2    22 789887765  67798864

>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.02  E-value=4.3e-06  Score=53.90  Aligned_cols=58  Identities=14%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             EEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceee
Q psy17065         86 VKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRY  148 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~  148 (150)
                      ++|+..|.|.+. ++.+++|| +|||+| ++++|.+ +.+.++.-|.+|.+|.  ...+||+.-
T Consensus         1 IeKk~aQVlsi~-Gd~vQ~MD~etyeTf-elpi~~~-v~ee~~~~l~~G~eVe--Ywe~mGr~K   59 (67)
T d1iz6a2           1 IDKKTAQVIAIT-PDTVQIMDMETYETF-EVPIDTG-VADEIRDQLKEGINVE--YWETLGRIK   59 (67)
T ss_dssp             CEEEEEEEEEEC-SSEEEEECTTTCCEE-EEEHHHH-BCGGGTTTCCTTCEEE--EEEETTEEE
T ss_pred             CccceeEEEEEc-CCeEEEeecCCceeE-EEecCCC-ccHHHHhccCCCCEEE--EEeecCcEE
Confidence            589999999999 77799999 999998 6666532 2223455688988765  457888764

>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.89  E-value=1.4e-05  Score=51.13  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             EEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceee
Q psy17065         86 VKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRY  148 (150)
Q Consensus        86 v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~  148 (150)
                      ++|+..|.|.+. ++.+++|| |||++| ++++|.  ..+.++.-|.+|.+|.  ...+||+.-
T Consensus         2 IeK~~aQVlsi~-Gd~vq~MD~etyetf-elpm~~--~~ee~~~~l~~G~eVe--ywe~mGr~K   59 (65)
T d1bkba2           2 IEKFTAQILSVS-GDVIQLMDMRDYKTI-EVPMKY--VEEEAKGRLAPGAEVE--VWQILDRYK   59 (65)
T ss_dssp             CEEEEEEEEEEC-SSEEEEEETTTCCEE-EEEGGG--BCHHHHTTCCTTCEEE--EEEETTEEE
T ss_pred             ccccceeEEEEc-CCeEEEeecCcceeE-EecCCC--CChHHHhccCCCCEEE--EEeecCcEE
Confidence            689999999999 77799999 999988 565542  2223344588988765  567788753