Psyllid ID: psy17120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEccccccccccccccEEEEEEEcccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcEEEcccccccccccccccccccHHHHHHccccHHHHHHHHHHccccccccccccccccccccEEEEEEccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEccccccc
Coil and Loop (DISEMBL)
ycggalglengvipdkdisassahdsssvgpqfgssyifQISCIKRHNLIESLFLIHSRlrhdknggawcpkhmvgndgheyievNLHDLHIVTGvqlqgrfgnglgqEYAEEIVVDFwrpgftkwrrwkgrngkev
Flexible Loop (DISEMBL)
ycggalglengviPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVvdfwrpgftkwrrwkgrngkev
Low Complexity Region (SEG)
YCGGALGLENGVIPDKDIsassahdsssVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV
Disordered region (IsUnstruct)
********************************FGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK*******
Disordered Region (DISOPRED)
YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR*****
Disordered Region (DISEMBL)
YCGGALGLENGVIPDKDIS***********PQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV
Disordered Region (DISPRO)
*****LGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q16832	855	Discoidin domain-containi	yes	N/A	0.802	0.128	0.343	2e-14
Q62371	854	Discoidin domain-containi	yes	N/A	0.802	0.128	0.328	5e-13
Q08345	913	Epithelial discoidin doma	no	N/A	0.583	0.087	0.419	2e-11
Q03146	911	Epithelial discoidin doma	no	N/A	0.583	0.087	0.419	2e-11
Q63474	910	Epithelial discoidin doma	no	N/A	0.583	0.087	0.419	2e-11
Q7YR43	909	Epithelial discoidin doma	no	N/A	0.766	0.115	0.343	1e-07

>sp|Q16832|DDR2_HUMAN Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 27/137 (19%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+  G IPD+DI+ASS   S S   ++G                        RL 
Sbjct: 30  CRYPLGMSGGQIPDEDITASSQW-SESTAAKYG------------------------RLD 64

Query: 62  HDKNGGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            ++  GAWCP+  V  +D  E+++++LH LH +T V  QGR   G G E+A    +++ R
Sbjct: 65  SEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 124

Query: 121 PGFTKWRRWKGRNGKEV 137
            G T+W  W+ R+GK+V
Sbjct: 125 DG-TRWISWRNRHGKQV 140

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell differentiation, remodeling of the extracellular matrix, cell migration and cell proliferation. Required for normal bone development. Regulates osteoblast differentiation and chondrocyte maturation via a signaling pathway that involves MAP kinases and leads to the activation of the transcription factor RUNX2. Regulates remodeling of the extracellular matrix by up-regulation of the collagenases MMP1, MMP2 and MMP13, and thereby facilitates cell migration and tumor cell invasion. Promotes fibroblast migration and proliferation, and thereby contributes to cutaneous wound healing.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 1

>sp|Q62371|DDR2_MOUSE Discoidin domain-containing receptor 2 OS=Mus musculus GN=Ddr2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 27/137 (19%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+  G IPD+DI+ASS   S S   ++G                        RL 
Sbjct: 30  CRYPLGMSGGHIPDEDITASSQW-SESTAAKYG------------------------RLD 64

Query: 62  HDKNGGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            ++  GAWCP+  V  +D  E+++++L  LH +T V  QGR   G G E+A    +++ R
Sbjct: 65  SEEGDGAWCPEIPVQPDDLKEFLQIDLRTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 124

Query: 121 PGFTKWRRWKGRNGKEV 137
            G ++W  W+ R+GK+V
Sbjct: 125 DG-SRWISWRNRHGKQV 140

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell differentiation, remodeling of the extracellular matrix, cell migration and cell proliferation. Required for normal bone development. Regulates osteoblast differentiation and chondrocyte maturation via a signaling pathway that involves MAP kinases and leads to the activation of the transcription factor RUNX2. Regulates remodeling of the extracellular matrix by up-regulation of the collagenases MMP1, MMP2 and MMP13, and thereby facilitates cell migration and tumor cell invasion. Promotes fibroblast migration and proliferation, and thereby contributes to cutaneous wound healing.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens GN=DDR1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
           HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct: 61  HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
            + R G  +W  WK R G+EV
Sbjct: 121 RYSRDG-RRWMGWKDRWGQEV 140

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell attachment to the extracellular matrix, remodeling of the extracellular matrix, cell migration, differentiation, survival and cell proliferation. Collagen binding triggers a signaling pathway that involves SRC and leads to the activation of MAP kinases. Regulates remodeling of the extracellular matrix by up-regulation of the matrix metalloproteinases MMP2, MMP7 and MMP9, and thereby facilitates cell migration and wound healing. Required for normal blastocyst implantation during pregnancy, for normal mammary gland differentiation and normal lactation. Required for normal ear morphology and normal hearing (By similarity). Promotes smooth muscle cell migration, and thereby contributes to arterial wound healing. Also plays a role in tumor cell invasion. Phosphorylates PTPN11.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q03146|DDR1_MOUSE Epithelial discoidin domain-containing receptor 1 OS=Mus musculus GN=Ddr1 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
           HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct: 62  HSRLESSDGDGAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRL 121

Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
            + R G  +W  WK R G+EV
Sbjct: 122 RYSRDG-RRWMDWKDRWGQEV 141

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell attachment to the extracellular matrix, remodeling of the extracellular matrix, cell migration, differentiation, survival and cell proliferation. Collagen binding triggers a signaling pathway that involves SRC and leads to the activation of MAP kinases. Regulates remodeling of the extracellular matrix by up-regulation of the matrix metalloproteinases MMP2, MMP7 and MMP9, and thereby facilitates cell migration and wound healing, but also tumor cell invasion. Promotes smooth muscle cell migration, and thereby contributes to arterial wound healing. Phosphorylates PTPN11 (By similarity). Required for normal blastocyst implantation during pregnancy, for normal mammary gland differentiation and normal lactation. Required for normal ear morphology and normal hearing.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q63474|DDR1_RAT Epithelial discoidin domain-containing receptor 1 OS=Rattus norvegicus GN=Ddr1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
           HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct: 62  HSRLESSDGDGAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRL 121

Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
            + R G  +W  WK R G+EV
Sbjct: 122 RYSRDG-RRWMDWKDRWGQEV 141

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell attachment to the extracellular matrix, remodeling of the extracellular matrix, cell migration, differentiation, survival and cell proliferation. Collagen binding triggers a signaling pathway that involves SRC and leads to the activation of MAP kinases. Regulates remodeling of the extracellular matrix by up-regulation of the matrix metalloproteinases MMP2, MMP7 and MMP9, and thereby facilitates cell migration and wound healing. Promotes smooth muscle cell migration, and thereby contributes to arterial wound healing. Also plays a role in tumor cell invasion. Phosphorylates PTPN11. Required for normal blastocyst implantation during pregnancy, for normal mammary gland differentiation and normal lactation. Required for normal ear morphology and normal hearing.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q7YR43|DDR1_PANTR Epithelial discoidin domain-containing receptor 1 OS=Pan troglodytes GN=DDR1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 32/137 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+++  IPD DISASS+   S                              +  R
Sbjct: 31  CRYALGMQDRTIPDSDISASSSWSDS------------------------------TAAR 60

Query: 62  HDKNG-GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
           H  +G GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    + + R
Sbjct: 61  HSSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSR 120

Query: 121 PGFTKWRRWKGRNGKEV 137
            G  +W  WK R G+EV
Sbjct: 121 DG-RRWMGWKDRWGQEV 136

Tyrosine kinase that functions as cell surface receptor for fibrillar collagen and regulates cell attachment to the extracellular matrix, remodeling of the extracellular matrix, cell migration, differentiation, survival and cell proliferation. Collagen binding triggers a signaling pathway that involves SRC and leads to the activation of MAP kinases. Regulates remodeling of the extracellular matrix by up-regulation of the matrix metalloproteinases MMP2, MMP7 and MMP9, and thereby facilitates cell migration and wound healing. Promotes smooth muscle cell migration, and thereby contributes to arterial wound healing. Also plays a role in tumor cell invasion. Phosphorylates PTPN11. Required for normal blastocyst implantation during pregnancy, for normal mammary gland differentiation and normal lactation. Required for normal ear morphology and normal hearing.

Pan troglodytes (taxid: 9598)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
270003120	932	hypothetical protein TcasGA2_TC001551 [T	0.817	0.120	0.551	5e-38
242022568	953	Discoidin domain-containing receptor 2 p	0.817	0.117	0.507	3e-36
383853780	950	PREDICTED: discoidin domain-containing r	0.810	0.116	0.514	2e-34
350406216	950	PREDICTED: discoidin domain-containing r	0.810	0.116	0.514	4e-34
328785806	949	PREDICTED: discoidin domain-containing r	0.810	0.116	0.514	5e-34
340716324	950	PREDICTED: discoidin domain-containing r	0.810	0.116	0.514	5e-34
380018423	492	PREDICTED: discoidin domain-containing r	0.810	0.225	0.507	4e-33
198472223	807	GA16357 [Drosophila pseudoobscura pseudo	0.817	0.138	0.485	7e-33
195471844	763	GE13703 [Drosophila yakuba] gi|194174313	0.817	0.146	0.470	1e-30
195156789	645	GL25507 [Drosophila persimilis] gi|19411	0.773	0.164	0.484	1e-30

>gi|270003120|gb|EEZ99567.1| hypothetical protein TcasGA2_TC001551 [Tribolium castaneum]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 93/136 (68%), Gaps = 24/136 (17%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           CG ALG+E+G I D  I+ASSA+DSSSVGPQ                        H RLR
Sbjct: 71  CGSALGMESGAIKDSAITASSAYDSSSVGPQ------------------------HGRLR 106

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
           +DKNGGAWCP+ MV  D  EY+E+NL +LH++TG + QGRFGNG GQEYAEE ++++WRP
Sbjct: 107 NDKNGGAWCPRQMVSRDAKEYLEINLEELHVITGCRTQGRFGNGQGQEYAEEYMIEYWRP 166

Query: 122 GFTKWRRWKGRNGKEV 137
            FTKW RWK R+GKE+
Sbjct: 167 NFTKWVRWKNRSGKEL 182

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022568|ref|XP_002431712.1| Discoidin domain-containing receptor 2 precursor, putative [Pediculus humanus corporis] gi|212517020|gb|EEB18974.1| Discoidin domain-containing receptor 2 precursor, putative [Pediculus humanus corporis]

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 92/136 (67%), Gaps = 24/136 (17%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+E+ +IPDKDI+ASS +DS+SVGPQ                        H RL+
Sbjct: 10  CNKPLGMESRLIPDKDITASSFYDSASVGPQ------------------------HGRLK 45

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
           +DKNGGAWCPK M+  + HEY+E+NLHDL+++TG + QGRFGNG G EYAE+ ++D+W+P
Sbjct: 46  NDKNGGAWCPKKMIDKEAHEYLEINLHDLYVITGTKTQGRFGNGKGLEYAEKFMLDYWKP 105

Query: 122 GFTKWRRWKGRNGKEV 137
           G +KW RWK RN  E+
Sbjct: 106 GTSKWSRWKSRNKSEI 121

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853780|ref|XP_003702400.1| PREDICTED: discoidin domain-containing receptor 2-like [Megachile rotundata]

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 25/136 (18%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+ENG IPD+DISASS +D S +GP+                        H+RLR
Sbjct: 63  CSAALGMENGEIPDEDISASSMYDPS-LGPK------------------------HARLR 97

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            DK GGAWCPK+MV  +G EY+EVNLH+  I++ V+ QGRFGNG G EY EE  V++WRP
Sbjct: 98  QDKGGGAWCPKNMVTKEGKEYLEVNLHNPRILSSVRTQGRFGNGHGVEYTEEYFVEYWRP 157

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW RW+ R G E+
Sbjct: 158 GFNKWVRWRNRRGMEL 173

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406216|ref|XP_003487695.1| PREDICTED: discoidin domain-containing receptor 2-like [Bombus impatiens]

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 85/136 (62%), Gaps = 25/136 (18%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+ENG IPD+DISASS +D S +GP+                        H+RLR
Sbjct: 63  CTAALGMENGEIPDEDISASSMYDPS-LGPK------------------------HARLR 97

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            DK GGAWCPK+MV  +G EY+EVNLH   I+T  + QGRFGNG G EY EE  V++WRP
Sbjct: 98  QDKGGGAWCPKNMVTKEGKEYLEVNLHSPRILTSTRTQGRFGNGQGVEYTEEYFVEYWRP 157

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW RW+ R G E+
Sbjct: 158 GFNKWVRWRNRRGMEL 173

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785806|ref|XP_394687.3| PREDICTED: discoidin domain-containing receptor 2-like [Apis mellifera]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 85/136 (62%), Gaps = 25/136 (18%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+ENG IPD+DISASS +D S +GP+                        H+RLR
Sbjct: 62  CTAALGMENGEIPDEDISASSMYDPS-LGPK------------------------HARLR 96

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            DK GGAWCPK+MV  +G EY+EVNLH   I+T  + QGRFGNG G EY EE  V++WRP
Sbjct: 97  QDKGGGAWCPKNMVTKEGKEYLEVNLHSPRILTSTRTQGRFGNGHGVEYTEEYFVEYWRP 156

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW RW+ R G E+
Sbjct: 157 GFNKWVRWRNRRGMEL 172

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716324|ref|XP_003396649.1| PREDICTED: discoidin domain-containing receptor 2-like [Bombus terrestris]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 85/136 (62%), Gaps = 25/136 (18%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+ENG IPD+DISASS +D S +GP+                        H+RLR
Sbjct: 63  CTAALGMENGEIPDEDISASSMYDPS-LGPK------------------------HARLR 97

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            DK GGAWCPK+MV  +G EY+EVNLH   I+T  + QGRFGNG G EY EE  V++WRP
Sbjct: 98  QDKGGGAWCPKNMVTKEGKEYLEVNLHSPRILTSTRTQGRFGNGHGVEYTEEYFVEYWRP 157

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW RW+ R G E+
Sbjct: 158 GFNKWVRWRNRRGMEL 173

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018423|ref|XP_003693128.1| PREDICTED: discoidin domain-containing receptor 2-like [Apis florea]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 84/136 (61%), Gaps = 25/136 (18%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+ENG IPD+DISASS +D S +GP+                        H+RLR
Sbjct: 63  CTAALGMENGEIPDEDISASSMYDPS-LGPK------------------------HARLR 97

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            DK GGAWCPK+MV  +G EY+EVNLH    +T  + QGRFGNG G EY EE  V++WRP
Sbjct: 98  QDKGGGAWCPKNMVTKEGKEYLEVNLHSPRALTSTRTQGRFGNGHGVEYTEEYFVEYWRP 157

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW RW+ R G E+
Sbjct: 158 GFNKWVRWRNRRGMEL 173

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472223|ref|XP_001355875.2| GA16357 [Drosophila pseudoobscura pseudoobscura] gi|198139662|gb|EAL32934.2| GA16357 [Drosophila pseudoobscura pseudoobscura]

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/136 (48%), Positives = 83/136 (61%), Gaps = 24/136 (17%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+E+G I D  I+ASSAHD+  VGPQ                        H+RL+
Sbjct: 103 CNVPLGMESGAITDAQITASSAHDTGFVGPQ------------------------HARLK 138

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            D NGGAWCPKHMV N   EY++V+L   H++T V+ QGRFG G GQEY E  V+++WRP
Sbjct: 139 TDNNGGAWCPKHMVSNALKEYLQVDLLQTHVITAVRTQGRFGKGQGQEYTEAYVLEYWRP 198

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW+RWK   GKE+
Sbjct: 199 GFDKWQRWKNSQGKEI 214

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471844|ref|XP_002088212.1| GE13703 [Drosophila yakuba] gi|194174313|gb|EDW87924.1| GE13703 [Drosophila yakuba]

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/136 (47%), Positives = 82/136 (60%), Gaps = 24/136 (17%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+E+ +I D  I+ASSAHD   VGPQ                        H+RL+
Sbjct: 81  CNVPLGMESLLITDAQITASSAHDMGFVGPQ------------------------HARLK 116

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            D NGGAWCPKHMV N   EY++V+L   H++T ++ QGRFG G GQEY E  V+++WRP
Sbjct: 117 TDTNGGAWCPKHMVSNALKEYLQVDLLQTHVITAIRTQGRFGKGQGQEYTEAYVLEYWRP 176

Query: 122 GFTKWRRWKGRNGKEV 137
           GF KW+RWK   GKE+
Sbjct: 177 GFDKWQRWKNIQGKEI 192

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195156789|ref|XP_002019279.1| GL25507 [Drosophila persimilis] gi|194115432|gb|EDW37475.1| GL25507 [Drosophila persimilis]

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 24/130 (18%)

Query: 8   LENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGG 67
           +E+G I D  I+ASSAHD+  VGPQ                        H+RL+ D NGG
Sbjct: 1   MESGAITDAQITASSAHDTGFVGPQ------------------------HARLKTDNNGG 36

Query: 68  AWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWR 127
           AWCPKHMV N   EY++V+L   H++T V+ QGRFG G GQEY E  V+++WRPGF KW+
Sbjct: 37  AWCPKHMVSNALKEYLQVDLLQTHVITAVRTQGRFGKGQGQEYTEAYVLEYWRPGFDKWQ 96

Query: 128 RWKGRNGKEV 137
           RWK   GKE+
Sbjct: 97  RWKNSQGKEI 106

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0085409	772	CG34380 [Drosophila melanogast	0.591	0.104	0.555	1.2e-26
FB|FBgn0053531	1064	Ddr "Discoidin domain receptor	0.788	0.101	0.449	8.6e-23
WB|WBGene00016104	766	ddr-1 [Caenorhabditis elegans	0.562	0.100	0.410	5.1e-19
UNIPROTKB|Q5T244	148	DDR2 "Discoidin domain-contain	0.627	0.581	0.386	5.2e-16
UNIPROTKB|A2ABL0	147	DDR1 "Epithelial discoidin dom	0.583	0.544	0.419	8.4e-16
UNIPROTKB|A2ABL1	166	DDR1 "Epithelial discoidin dom	0.583	0.481	0.419	8.4e-16
UNIPROTKB|A2ABL2	209	DDR1 "Epithelial discoidin dom	0.583	0.382	0.419	8.4e-16
UNIPROTKB|B7Z3A2	251	DDR1 "cDNA FLJ54797, highly si	0.583	0.318	0.419	8.4e-16
UNIPROTKB|B8JJ50	251	DDR1 "Epithelial discoidin dom	0.583	0.318	0.419	8.4e-16
UNIPROTKB|E7EPN2	170	DDR1 "Epithelial discoidin dom	0.583	0.470	0.419	8.4e-16

FB|FBgn0085409 CG34380 [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             H+RL+ D +GGAWCPKHMV N   EY++V+L   H++T ++ QGR+G G GQEY E  V+
Sbjct:   109 HARLKTDNDGGAWCPKHMVSNALKEYLQVDLLQTHVITAIRTQGRYGKGQGQEYTEAYVL 168

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
             ++WRPGF KW+RWK   GKE+
Sbjct:   169 EYWRPGFDKWQRWKNIQGKEI 189

GO:0007165 "signal transduction" evidence=ISS

GO:0004716 "receptor signaling protein tyrosine kinase activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IEA

FB|FBgn0053531 Ddr "Discoidin domain receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 8.6e-23, P = 8.6e-23
 Identities = 49/109 (44%), Positives = 72/109 (66%)

Query:    29 VGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLH 88
             +G + G+   FQI+    H++  ++   H+R  ++ NGGAWCPKHMV     EY++V+L 
Sbjct:   110 LGMESGAIADFQITASSAHDM-GNVGPQHARAANNNNGGAWCPKHMVSRGLTEYLQVDLL 168

Query:    89 DLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
              +H+V+ ++ QGRFG G GQEY E  V+++WRPG  KW RW+   GKEV
Sbjct:   169 GVHLVSAIRTQGRFGKGQGQEYTEAYVIEYWRPGLKKWIRWRSLQGKEV 217

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

WB|WBGene00016104 ddr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
 Identities = 32/78 (41%), Positives = 54/78 (69%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             ++RL  +   GAWCPK  + +  +E+++V L+D  ++T V+ QGR+GNG G+E+A   ++
Sbjct:    56 NARLHSELASGAWCPKPQINSKSYEFLQVTLNDTFLITSVETQGRYGNGTGREFASHYMI 115

Query:   117 DFWRPGFTKWRRWKGRNG 134
             D+ RPG ++W R+K R G
Sbjct:   116 DYLRPG-SQWIRYKNRTG 132

GO:0007155 "cell adhesion" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5T244 DDR2 "Discoidin domain-containing receptor 2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 34/88 (38%), Positives = 52/88 (59%)

Query:    51 ESLFLIHSRLRHDKNGGAWCPKHMVGNDG-HEYIEVNLHDLHIVTGVQLQGRFGNGLGQE 109
             ES    + RL  ++  GAWCP+  V  D   E+++++LH LH +T V  QGR   G G E
Sbjct:    54 ESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIE 113

Query:   110 YAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
             +A    +++ R G T+W  W+ R+GK+V
Sbjct:   114 FAPMYKINYSRDG-TRWISWRNRHGKQV 140

GO:0007155 "cell adhesion" evidence=IEA

GO:0003416 "endochondral bone growth" evidence=IEA

GO:0010763 "positive regulation of fibroblast migration" evidence=IEA

GO:0030199 "collagen fibril organization" evidence=IEA

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0035988 "chondrocyte proliferation" evidence=IEA

GO:0038062 "protein tyrosine kinase collagen receptor activity" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0090091 "positive regulation of extracellular matrix disassembly" evidence=IEA

UNIPROTKB|A2ABL0 DDR1 "Epithelial discoidin domain-containing receptor 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   121 RYSRDG-RRWMGWKDRWGQEV 140

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001952 "regulation of cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0038063 "collagen-activated tyrosine kinase receptor signaling pathway" evidence=IEA

GO:0043583 "ear development" evidence=IEA

GO:0044319 "wound healing, spreading of cells" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0061302 "smooth muscle cell-matrix adhesion" evidence=IEA

UNIPROTKB|A2ABL1 DDR1 "Epithelial discoidin domain-containing receptor 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   121 RYSRDG-RRWMGWKDRWGQEV 140

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001952 "regulation of cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0038063 "collagen-activated tyrosine kinase receptor signaling pathway" evidence=IEA

GO:0043583 "ear development" evidence=IEA

GO:0044319 "wound healing, spreading of cells" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0061302 "smooth muscle cell-matrix adhesion" evidence=IEA

UNIPROTKB|A2ABL2 DDR1 "Epithelial discoidin domain-containing receptor 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   121 RYSRDG-RRWMGWKDRWGQEV 140

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001952 "regulation of cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0038063 "collagen-activated tyrosine kinase receptor signaling pathway" evidence=IEA

GO:0043583 "ear development" evidence=IEA

GO:0044319 "wound healing, spreading of cells" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0061302 "smooth muscle cell-matrix adhesion" evidence=IEA

UNIPROTKB|B7Z3A2 DDR1 "cDNA FLJ54797, highly similar to Epithelial discoidin domain-containing receptor 1 (EC 2.7.10.1)" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    87 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 146

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   147 RYSRDG-RRWMGWKDRWGQEV 166

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|B8JJ50 DDR1 "Epithelial discoidin domain-containing receptor 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   121 RYSRDG-RRWMGWKDRWGQEV 140

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001952 "regulation of cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0038063 "collagen-activated tyrosine kinase receptor signaling pathway" evidence=IEA

GO:0043583 "ear development" evidence=IEA

GO:0044319 "wound healing, spreading of cells" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0061302 "smooth muscle cell-matrix adhesion" evidence=IEA

UNIPROTKB|E7EPN2 DDR1 "Epithelial discoidin domain-containing receptor 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
             HSRL      GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    +
Sbjct:    61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120

Query:   117 DFWRPGFTKWRRWKGRNGKEV 137
              + R G  +W  WK R G+EV
Sbjct:   121 RYSRDG-RRWMGWKDRWGQEV 140

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0001952 "regulation of cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0038063 "collagen-activated tyrosine kinase receptor signaling pathway" evidence=IEA

GO:0043583 "ear development" evidence=IEA

GO:0044319 "wound healing, spreading of cells" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0061302 "smooth muscle cell-matrix adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
cd00057	143	cd00057, FA58C, Coagulation factor 5/8 C-terminal	3e-06
smart00231	139	smart00231, FA58C, Coagulation factor 5/8 C-termin	5e-05
pfam00754	128	pfam00754, F5_F8_type_C, F5/8 type C domain	8e-04

>gnl|CDD|238014 cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 34/134 (25%)

Query: 4   GALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHD 63
             LG+E+G + D  I+ASS+  SS                              +RL   
Sbjct: 1   EPLGMESG-LADDQITASSS-YSSGWEAS------------------------RARL--- 31

Query: 64  KNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGF 123
            +  AW P     ND  ++++V+L     VTG+Q QGR   G   E+     V +   G 
Sbjct: 32  NSDNAWTPA---VNDPPQWLQVDLGKTRRVTGIQTQGRK-GGGSSEWVTSYKVQYSLDG- 86

Query: 124 TKWRRWKGRNGKEV 137
             W  +K +  ++V
Sbjct: 87  ETWTTYKDKGEEKV 100

Length = 143

>gnl|CDD|214572 smart00231, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin domain

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
            +RL +  + G WCP     ND   +I+V+L  L  VTGV    R GNG    Y  E   
Sbjct: 25  IARL-NGGSDGGWCPA---KNDLPPWIQVDLGRLRTVTGVITGRRHGNGDWVTYKLE-YS 79

Query: 117 DFWRPGFTKWRRWKGRNGKE 136
           D        W  +K  N K 
Sbjct: 80  DDGVN----WTTYKDGNSKV 95

Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes. Length = 139

>gnl|CDD|216100 pfam00754, F5_F8_type_C, F5/8 type C domain

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 58  SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGR--FGNGLGQEY 110
           +         AW  K     D  ++++V+L     +TGV  QGR   GNG  + Y
Sbjct: 17  AAAIDGNGSTAWSSKW---GDAPQWLQVDLGKPKKITGVVTQGRQDGGNGYVKSY 68

This domain is also known as the discoidin (DS) domain family. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG1094|consensus	807		99.94
smart00231	139	FA58C Coagulation factor 5/8 C-terminal domain, di	99.86
cd00057	143	FA58C Substituted updates: Jan 31, 2002	99.79
KOG3516|consensus	1306		99.29
PF00754	129	F5_F8_type_C: F5/8 type C domain; InterPro: IPR000	99.14
KOG4276|consensus	113		91.42
smart00607	151	FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domai	83.12

>KOG1094|consensus

Probab=99.94  E-value=4.9e-27  Score=202.46  Aligned_cols=111  Identities=49%  Similarity=0.934  Sum_probs=106.0

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..+|||++|.|||+||||||+|+ ...+|+                        +|||+.+.+++||||+.++.....
T Consensus        24 ~C~~~LGMqn~~I~D~qIsASSs~d-qSt~~~------------------------~~rl~se~g~GAWCPk~~v~~~~~   78 (807)
T KOG1094|consen   24 KCRYALGMQNRTIPDSQISASSSFD-QSTGPQ------------------------HARLHSEDGSGAWCPKGQVNSKSK   78 (807)
T ss_pred             HhhhhhcCCCCCCChhhcccccccc-cccccc------------------------cccccccCCCcccCCCcccCccch
Confidence            4999999999999999999999998 788888                        999999999999999999888889


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCeeC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV  137 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~~  137 (137)
                      |||||||...+.||.|.||||.+.|.|.+|.+.|+|.|+.+| ..|..|++..|++|
T Consensus        79 E~LQvdl~~~hlit~V~TQGR~~~G~G~Efa~~y~I~Y~Rpg-~~Wi~wk~r~g~ev  134 (807)
T KOG1094|consen   79 EYLQVDLQRLHLITSVETQGRHAGGLGKEFARAYKIRYSRPG-LRWISWKDRWGQEV  134 (807)
T ss_pred             hheEEeeeceEEEEEeeeccccCCCccceehhheeeeeccCc-chheeeccccCcee
Confidence            999999999999999999999999999999999999999999 89999999999886

>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain

Probab=99.86  E-value=3.5e-21  Score=139.20  Aligned_cols=90  Identities=34%  Similarity=0.620  Sum_probs=77.6

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++    |++|+|||.    .+.|+                        +|||+.. ..++|||+.   ++..
T Consensus         1 ~c~~~lG~~~----d~~itasS~----~~~~~------------------------~~rL~~~-~~~~W~~~~---~~~~   44 (139)
T smart00231        1 PCNEPLGLES----DSQITASSS----YWAAK------------------------IARLNGG-SDGAWCPAK---NSLP   44 (139)
T ss_pred             CCCccccCCc----cccEEEcCC----CCCCC------------------------ccCcCcC-CCCcccCCC---CCCC
Confidence            5999999998    999999996    35677                        9999964 347999985   6778


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      +||||||++++.|++|++||+.+.   ..||+.|.+ ||.|+ ..|..|.+
T Consensus        45 ~wlqvDLg~~~~v~~i~~qg~~~~---~~~~~~~~~-~s~dg-~~W~~~~~   90 (139)
T smart00231       45 PWIQVDLGRTRTVTGVITGGRHGD---GDGVTYKLL-YSDDG-NNWTTYKD   90 (139)
T ss_pred             ceeEeeccCcEEEEEEEecccCCC---CcEEEEEEE-EEeCC-CCEeEEeC
Confidence            999999999999999999997443   589999988 99999 99999975

Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

>cd00057 FA58C Substituted updates: Jan 31, 2002

Probab=99.79  E-value=1.4e-18  Score=124.27  Aligned_cols=94  Identities=35%  Similarity=0.625  Sum_probs=80.7

Q ss_pred             CcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceE
Q psy17120          4 GALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYI   83 (137)
Q Consensus         4 ~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wL   83 (137)
                      .||||++|. +|.+|+|||.+. ..+.|.                        +++++.   ...||+..   .+..+||
T Consensus         1 ~~~g~~~~~-~~~~vtaSS~~~-~~~~~~------------------------~~dg~~---~t~W~~~~---~~~~~wi   48 (143)
T cd00057           1 EPLGMESGL-ADDQITASSSYS-SGWEAS------------------------RARLNS---DNAWTPAV---NDPPQWL   48 (143)
T ss_pred             CCCcccCCC-CCCCEEEEecCC-CCCCcC------------------------eeecCC---CCcccCCC---CCCCceE
Confidence            489999999 999999999876 356777                        787776   37899985   4678999


Q ss_pred             EeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         84 EVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        84 QVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ||||++++.|++|.+|++.+.. ...+++.|+|+||.|| ..|..+.+
T Consensus        49 ~vDL~~~~~i~~v~i~~~~~~~-~~~~~~~~~i~~s~dg-~~W~~~~~   94 (143)
T cd00057          49 QVDLGKTRRVTGIQTQGRKGGG-SSEWVTSYKVQYSLDG-ETWTTYKD   94 (143)
T ss_pred             EEECCCCEEEEEEEEccCCCCC-ccCeeEEEEEEEECCC-CCEeEEEc
Confidence            9999999999999999987521 2589999999999999 99999886

>KOG3516|consensus

Probab=99.29  E-value=6.1e-13  Score=121.59  Aligned_cols=95  Identities=26%  Similarity=0.560  Sum_probs=79.7

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..||   +..|+.-.+.|||... ..++|.                        .+|+..   .++|.|..   ++..+
T Consensus        30 cde~l---~s~L~~v~f~ssS~is-~s~gp~------------------------~~~~~G---~~gwsp~~---~~~~~   75 (1306)
T KOG3516|consen   30 CDEPL---NSGLPAVAFLSSSAIS-QSHGPK------------------------LNRRVG---ISGWSPKI---SNYNQ   75 (1306)
T ss_pred             CCchh---hhhhhHHHhhhhhhhh-hcccch------------------------hhhhcC---cccccccc---Ccccc
Confidence            66666   4456667788888765 567776                        677665   48999996   78899


Q ss_pred             eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      |||+||++++.|++|+|||+.+.   +.||+.|.++|++.+ ..|++|....+
T Consensus        76 wlq~dLg~~~ev~aVatqg~~~S---ddwvt~y~l~~sD~g-~~w~~y~~~~~  124 (1306)
T KOG3516|consen   76 WLQLDLGKRMEVTAVATQGRYGS---DDWVTSYILQYSDPG-RNWKTYSQEGS  124 (1306)
T ss_pred             eeeeccCCceeeEEEeeccccCc---chHHHHHHHhccCCc-cceEEEEeCCC
Confidence            99999999999999999999876   789999999999999 99999998643

>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain

Probab=99.14  E-value=3.7e-10  Score=78.07  Aligned_cols=67  Identities=18%  Similarity=0.483  Sum_probs=55.5

Q ss_pred             eeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         58 SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        58 aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ..+..+ ...+||+..   ....+||+|||++++.|.+|.++++....  ..++++|+|.+|.|| ..|+.+.+
T Consensus        19 ~~~Dg~-~~t~W~~~~---~~~~~~i~idl~~~~~i~~i~i~~~~~~~--~~~~~~~~i~~s~dg-~~w~~~~~   85 (129)
T PF00754_consen   19 NAFDGD-PSTAWCSNW---DDSPQWIQIDLGKPYTISGISIQFRNDGN--NGRPKSFKIEYSNDG-SNWTTVAS   85 (129)
T ss_dssp             GGGSSS-TTSSEEESS---SSSTEEEEEEEEEEEEEEEEEEEEESSTT--TEEEEEEEEEEESSS-SSEEEEEE
T ss_pred             heEeCC-CCCEEECCC---CCCCceEEEEeeeeEecceeeeccccccc--ceeeeeeeeeeeccc-cccccccc
Confidence            334433 458999974   57899999999999999999999987642  149999999999999 99999986

In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....

>KOG4276|consensus

Probab=91.42  E-value=0.5  Score=32.98  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=39.3

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK  130 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~  130 (137)
                      ++...|.-|||+.....+.--..-+.+.  +....+..+++-|.|| ++|..+.
T Consensus         4 d~k~awf~iDLG~~vip~~y~lrh~rgy--gRsalRnW~fQgS~Dg-ktWt~l~   54 (113)
T KOG4276|consen    4 DDKNAWFAIDLGLEVIPTAYTLRHARGY--GRSALRNWKFQGSKDG-KTWTDLR   54 (113)
T ss_pred             CCcceeEEEecCceEeeeeeeeeecccc--cHHHhhheeeeccccC-CcceeEE
Confidence            5678999999998877776655543332  2567788899999999 9999874

>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain

Probab=83.12  E-value=2  Score=31.81  Aligned_cols=42  Identities=12%  Similarity=0.076  Sum_probs=30.8

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR  120 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~  120 (137)
                      .+..+|.+|||++.+.|..|.+-.|.+--  .+-+..|.|.-+.
T Consensus        48 ~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc--~~rl~~~eI~IG~   89 (151)
T smart00607       48 KRSNPWWRVDLLQYMTIHSVTITNRGDCC--GERITGARILIGN   89 (151)
T ss_pred             CCCCCeEEEeCCCeEEeeEEEEecCCCCC--CccccceEEEECC
Confidence            46689999999999999999988775421  2345566666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
2wuh_A	178	Crystal Structure Of The Ddr2 Discoidin Domain Boun		9e-12
2z4f_A	173	Solution Structure Of The Discoidin Domain Of Ddr2		1e-11
4ag4_A	351	Crystal Structure Of A Ddr1-Fab Complex Length = 35		7e-09

>pdb|2WUH|A Chain A, Crystal Structure Of The Ddr2 Discoidin Domain Bound To A Triple-Helical Collagen Peptide Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 2   CGGALGLENGVIPDKDIXXXXXXXXXXVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+  G IPD+DI                                ES    + RL 
Sbjct: 18  CRYPLGMSGGQIPDEDI-------------------------TASSQWSESTAAKYGRLD 52
Query: 62  HDKNGGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            ++  GAWCP+  V  +D  E+++++LH LH +T V  QGR   G G E+A    +++ R
Sbjct: 53  SEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 112
Query: 121 PGFTKWRRWKGRNGKEV 137
            G T+W  W+ R+GK+V
Sbjct: 113 DG-TRWISWRNRHGKQV 128

>pdb|2Z4F|A Chain A, Solution Structure Of The Discoidin Domain Of Ddr2 Length = 173

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 2   CGGALGLENGVIPDKDIXXXXXXXXXXVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+  G IPD+DI                                ES    + RL 
Sbjct: 9   CRYPLGMSGGQIPDEDI-------------------------TASSQWSESTAAKYGRLD 43
Query: 62  HDKNGGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            ++  GAWCP+  V  +D  E+++++LH LH +T V  QGR   G G E+A    +++ R
Sbjct: 44  SEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 103
Query: 121 PGFTKWRRWKGRNGKEV 137
            G T+W  W+ R+GK+V
Sbjct: 104 DG-TRWISWRNRHGKQV 119

>pdb|4AG4|A Chain A, Crystal Structure Of A Ddr1-Fab Complex Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 2   CGGALGLENGVIPDKDIXXXXXXXXXXVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+++  IP                                 +  +S    HSRL 
Sbjct: 6   CRYALGMQDRTIP-------------------------DSDISASSSWSDSTAARHSRLE 40
Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
                GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    + + R 
Sbjct: 41  SSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRD 100
Query: 122 GFTKWRRWKGRNGKEV 137
           G  +W  WK R G+EV
Sbjct: 101 G-RRWMGWKDRWGQEV 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
4ag4_A	351	Epithelial discoidin domain-containing receptor 1;	1e-24
2wuh_A	178	Discoidin domain receptor 2; receptor-peptide comp	8e-23
3bn6_A	158	Lactadherin; anticoagulation, anti-coagulation, an	2e-22
1czt_A	160	Protein (coagulation factor V); membrane-binding,	1e-21
4deq_A	218	Neuropilin-1, vascular endothelial growth factor;	2e-21
3hny_M	159	Coagulation factor VIII; blood clotting, acute pha	4e-21
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-19
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-08
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	1e-19
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	8e-08
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	4e-17
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-09
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	4e-16
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	5e-09
2vm9_A	257	Discoidin-2, discoidin II; DDR, lectin, aggregatio	1e-14
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	2e-14
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	2e-07
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	7e-14
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	1e-07
2wn3_A	254	Discoidin-1 subunit A; type-H lectin, cell adhesio	2e-13
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	4e-10
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens} Length = 351

 Score = 95.2 bits (236), Expect = 1e-24
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 26/136 (19%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+++  IPD DISASS+   S    +                          RL 
Sbjct: 6   CRYALGMQDRTIPDSDISASSSWSDS-TAARHS------------------------RLE 40

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
                GAWCP   V     EY++V+L  LH+V  V  QGR   GLG+E++    + + R 
Sbjct: 41  SSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRD 100

Query: 122 GFTKWRRWKGRNGKEV 137
           G  +W  WK R G+EV
Sbjct: 101 G-RRWMGWKDRWGQEV 115

>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A Length = 178

 Score = 87.4 bits (216), Expect = 8e-23
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 27/137 (19%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+  G IPD+DI+ASS    S+   ++G                        RL 
Sbjct: 18  CRYPLGMSGGQIPDEDITASSQWSEST-AAKYG------------------------RLD 52

Query: 62  HDKNGGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            ++  GAWCP+  V  +D  E+++++LH LH +T V  QGR   G G E+A    +++ R
Sbjct: 53  SEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 112

Query: 121 PGFTKWRRWKGRNGKEV 137
            G T+W  W+ R+GK+V
Sbjct: 113 DG-TRWISWRNRHGKQV 128

>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A Length = 158

 Score = 85.8 bits (212), Expect = 2e-22
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 24/135 (17%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LGL++  IP+K I+ASS + +  +       Y                   ++RL 
Sbjct: 1   CTEPLGLKDNTIPNKQITASSYYKTWGLSAFSWFPY-------------------YARLD 41

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
           +     AW  +    N   E+++++L     VTG+  QG    G  Q Y     V +   
Sbjct: 42  NQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFGHIQ-YVAAYRVAYGDD 97

Query: 122 GFTKWRRWKGRNGKE 136
           G   W  +K     E
Sbjct: 98  G-VTWTEYKDPGASE 111

>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A Length = 160

 Score = 83.4 bits (206), Expect = 1e-21
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 32/138 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDS---SSVGPQFGSSYIFQISCIKRHNLIESLFLIHS 58
           C   LG+ENG I +K I+ASS   S       P                           
Sbjct: 2   CSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRA------------------------ 37

Query: 59  RLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDF 118
           RL       AW  K    N+  +++E++L  +  +T +  QG   +   + Y +   + +
Sbjct: 38  RLNAQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGC-KSLSSEMYVKSYTIHY 93

Query: 119 WRPGFTKWRRWKGRNGKE 136
              G   W+ ++ ++   
Sbjct: 94  SEQGVE-WKPYRLKSSMV 110

>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A Length = 218

 Score = 84.7 bits (209), Expect = 2e-21
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+E+G I    I+ASS +  ++   +                            R
Sbjct: 6   CMEALGMESGEIHSDQITASSQYS-TNWSAERS--------------------------R 38

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQE-YAEEIVVDFWR 120
            +     W P     +   E+I+V+L  L  VT V  QG       ++ Y +   +D   
Sbjct: 39  LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 95

Query: 121 PGFTKWRRWKGRNGKEV 137
            G   W   K  N   +
Sbjct: 96  NG-EDWITIKEGNKPVL 111

>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A Length = 159

 Score = 82.2 bits (203), Expect = 4e-21
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 31/138 (22%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSS--SVGPQFGSSYIFQISCIKRHNLIESLFLIHSR 59
           C   LG+E+  I D  I+ASS   +   +  P                           R
Sbjct: 5   CSMPLGMESKAISDAQITASSYFTNMFATWSPSKA------------------------R 40

Query: 60  LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW 119
           L       AW P+    N+  E+++V+      VTGV  QG   + L   Y +E ++   
Sbjct: 41  LHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLISSS 96

Query: 120 RPGFTKWRRWKGRNGKEV 137
           + G  +W  +      +V
Sbjct: 97  QDG-HQWTLFFQNGKVKV 113

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Length = 325

 Score = 81.8 bits (201), Expect = 1e-19
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+E+G I ++ ISASS +      PQ                            R
Sbjct: 7   CNVPLGMESGRIANEQISASSTYSDGRWTPQQS--------------------------R 40

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFG-NGLGQEYAEEIVVDFWR 120
              +   W P     +   EY++V+L  L ++T +  QG          Y +   ++   
Sbjct: 41  LHGDDNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVST 97

Query: 121 PGFTKWRRWKGRNGKEV 137
            G   W  ++     +V
Sbjct: 98  NG-EDWMVYRHGKNHKV 113

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Length = 325

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYA 111
            S  R   +   W P+      G E+++V+L     V GV +QG  G         + + 
Sbjct: 192 PSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFV 251

Query: 112 EEIVVDFWRPGFTKWRRWKGRNGKE 136
            +  V +   G   W   +    ++
Sbjct: 252 RKFKVSYSLNGKD-WEYIQDPRTQQ 275

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Length = 318

 Score = 81.3 bits (200), Expect = 1e-19
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+E+G I    I+ASS +  ++   +                            R
Sbjct: 7   CMEALGMESGEIHSDQITASSQYS-TNWSAERS--------------------------R 39

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQE-YAEEIVVDFWR 120
            +     W P     +   E+I+V+L  L  VT V  QG       ++ Y +   +D   
Sbjct: 40  LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 96

Query: 121 PGFTKWRRWKGRNGKEV 137
            G   W   K  N   +
Sbjct: 97  NG-EDWITIKEGNKPVL 112

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Length = 318

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 58  SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVD 117
             +R   +   W       +  +E+++++L +  IV G+ +QG       + +  +  + 
Sbjct: 192 ENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIG 250

Query: 118 FWRPGFTKWRRWKGRNGKEV 137
           +   G   W+     + ++ 
Sbjct: 251 YSNNGSD-WKMIMDDSKRKA 269

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 75.5 bits (185), Expect = 4e-17
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 33/142 (23%)

Query: 1   YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
            C   LG+ +G+I D  ISASS  +     P                           RL
Sbjct: 292 PCSNMLGMLSGLIADSQISASSTQEYLW-SPSAA------------------------RL 326

Query: 61  RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIV 115
               +   W P+      G E+++V+L     V GV +QG  G         + +  +  
Sbjct: 327 VS--SRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFK 384

Query: 116 VDFWRPGFTKWRRWKGRNGKEV 137
           V +   G   W   +    ++ 
Sbjct: 385 VSYSLNG-KDWEYIQDPRTQQP 405

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 30  GPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHD 89
            P    S       I   +          + R   +   W P     +   EY++V+L  
Sbjct: 138 VPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNL---DSNKEYLQVDLRF 194

Query: 90  LHIVTGVQLQGRFG-NGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
           L ++T +  QG          Y +   ++    G   W  ++     +V
Sbjct: 195 LTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 242

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 72.7 bits (178), Expect = 4e-16
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 33/141 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+ +G+I D  ISASS  +     P                           RL 
Sbjct: 412 CSNMLGMLSGLIADSQISASSTQEYLW-SPSAA------------------------RL- 445

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVV 116
              +   W P+      G E+++V+L     V GV +QG  G         + +  +  V
Sbjct: 446 -VSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKV 504

Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
            +   G   W   +    ++ 
Sbjct: 505 SYSLNG-KDWEYIQDPRTQQP 524

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 36  SYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTG 95
           S       I   +          + R   +   W P     +   EY++V+L  L ++T 
Sbjct: 263 SGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNL---DSNKEYLQVDLRFLTMLTA 319

Query: 96  VQLQGRFGNGLGQ-EYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
           +  QG          Y +   ++    G   W  ++     +V
Sbjct: 320 IATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 361

>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A* Length = 257

 Score = 67.0 bits (163), Expect = 1e-14
 Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 25/126 (19%)

Query: 6   LGLENGV-IPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK 64
            G  + +     ++ +S+ +++   G +               N   S        R D 
Sbjct: 5   AGSVSCLANALLNLRSSTDYNADH-GVKNS-----------ILNFSNS----KDASRFD- 47

Query: 65  NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFT 124
              +W        D +++I      +     +  QGR       ++     + +      
Sbjct: 48  GSESWSSSV---LDKNQFIVAGSDSVKHFVAISTQGRGD---HDQWVTSYKLRYTLDN-V 100

Query: 125 KWRRWK 130
            W  + 
Sbjct: 101 NWVEYN 106

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Length = 647

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 39  FQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQL 98
              S  K+           +RL       AW  K    N+ +++++++L  +  +T +  
Sbjct: 505 ITASSFKKSWWGNYWEPFLARLNAQGRVNAWQAKA---NNNNQWLQIDLLKIKKITAIVT 561

Query: 99  QGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKE 136
           QG   +   + Y +   + +   G T W+ ++ ++   
Sbjct: 562 QGC-KSLSSEMYVKSYTIHYSDQG-TDWKPYREKSSMV 597

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Length = 647

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
                          K     +   +I+V++    ++TG+Q QG   + L   Y  E  V
Sbjct: 360 ARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGA-KHYLKPYYTTEFCV 418

Query: 117 DFWRPGFTKWRRWKGRNGKE 136
            +       WR +KG + + 
Sbjct: 419 AYSLDR-KNWRIFKGNSTRN 437

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Length = 770

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
            +RL       AW P+    N+  E+++V+      VTGV  QG   + L   Y +E ++
Sbjct: 645 KARLHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLI 700

Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
              + G  +W  +      +V
Sbjct: 701 SSSQDG-HQWTLFFQNGKVKV 720

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Length = 770

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 33/137 (24%)

Query: 1   YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
            C   LG+ +G I D  I+AS  +   +                             +RL
Sbjct: 458 KCQTPLGMASGHIRDFQITASGQYGQWAP--------------------------KLARL 491

Query: 61  RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
            +  +  AW        +   +I+V+L    I+ G++ QG         Y  + ++ +  
Sbjct: 492 HYSGSINAWST-----KEPFSWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSL 545

Query: 121 PGFTKWRRWKGRNGKEV 137
            G  KW+ ++G +   +
Sbjct: 546 DG-KKWQTYRGNSTGTL 561

>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A* Length = 254

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 25/122 (20%)

Query: 13  IPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPK 72
                +  S+ ++         +                 L   ++         AWC  
Sbjct: 13  NAQCHLRTSTNYNGVH-TQFNSA-----------------LNYKNNGTNTIDGSEAWCSS 54

Query: 73  HMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132
                D ++YI            V LQGR       ++     + +       W  ++  
Sbjct: 55  I---VDTNQYIVAGCEVPRTFMCVALQGRGDAD---QWVTSYKIRYSLDN-VSWFEYRNG 107

Query: 133 NG 134
             
Sbjct: 108 AA 109

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 29/137 (21%)

Query: 1   YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
            C G LG+ +G+I D  I++S+  D + +                              +
Sbjct: 294 PCSGMLGMVSGLISDSQITSSNQGDRNWMP---------------------------ENI 326

Query: 61  RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
           R   +   W       +  +E+++++L +  IV G+ +QG   +   + +  +  + +  
Sbjct: 327 RLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSN 385

Query: 121 PGFTKWRRWKGRNGKEV 137
            G + W+     + ++ 
Sbjct: 386 NG-SDWKMIMDDSKRKA 401

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 57  HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIV 115
             R R +     W P     +   E+I+V+L  L  VT V  QG        + Y +   
Sbjct: 167 AERSRLNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYK 223

Query: 116 VDFWRPGFTKWRRWKGRNGKEV 137
           +D    G   W   K  N   +
Sbjct: 224 IDVSSNGED-WITIKEGNKPVL 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 31/90 (34%)

Query: 23  AHDSSSVGPQFGSSYIFQISCIKRH----------NLIESLFL----IHSRLRHDKNGGA 68
             DS  + P +   Y +    I  H           L   +FL    +  ++RHD    A
Sbjct: 458 TFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD--STA 513

Query: 69  WCPKHMVGNDGHEYIEVNLHDL-----HIV 93
           W     + N         L  L     +I 
Sbjct: 514 WNASGSILNT--------LQQLKFYKPYIC 535

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2wuh_A	178	Discoidin domain receptor 2; receptor-peptide comp	99.98
3hny_M	159	Coagulation factor VIII; blood clotting, acute pha	99.97
1czt_A	160	Protein (coagulation factor V); membrane-binding,	99.97
4ag4_A	351	Epithelial discoidin domain-containing receptor 1;	99.97
4deq_A	218	Neuropilin-1, vascular endothelial growth factor;	99.97
3bn6_A	158	Lactadherin; anticoagulation, anti-coagulation, an	99.97
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.95
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.94
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.94
2vm9_A	257	Discoidin-2, discoidin II; DDR, lectin, aggregatio	99.92
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.91
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.91
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.91
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.9
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.89
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	99.89
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.89
2wn3_A	254	Discoidin-1 subunit A; type-H lectin, cell adhesio	99.88
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.88
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.87
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.87
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	99.87
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.87
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.83
2w1s_A	192	Hyaluronoglucosaminidase; hexosaminidase, family 3	99.78
2v72_A	143	CBM32, EXO-alpha-sialidase; galactose, bacterial p	99.56
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	99.15
2j1a_A	150	Hyaluronidase, CBM32; protein-carbohydrate interac	98.93
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	98.89
4a4a_A	914	Alpha-N-acetylglucosaminidase family protein; hydr	98.82
3eyp_A	469	Putative alpha-L-fucosidase; structural genomics,	98.74
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	98.61
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	98.6
4a42_A	149	GH89_CBM32-4, alpha-N-acetylglucosaminidase family	98.54
4a3z_A	161	GH89_CBM32, alpha-N-acetylglucosaminidase family p	98.5
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	98.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.37
3ues_A	478	Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr	98.22
3lei_A	153	Platelet aggregation factor SM-HPAF; lectin domain	98.03
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	97.88
2zxq_A	1376	Endo-alpha-N-acetylgalactosaminidase; broken TIM b	97.69
4gwi_A	153	Lectinolysin, platelet aggregation factor SM-HPAF;	97.62
3hnm_A	172	Putative chitobiase; PSI-2, protein structure init	97.45
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	97.38
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	97.33
1k12_A	158	Lectin; beta barrel, protein carbohydrate complex,	97.05
2j1v_A	151	Fucolectin-related protein; carbohydrate-binding p	97.01
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	96.99
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	96.89
2j22_A	148	Fucolectin-related protein; carbohydrate-binding p	96.68
2cho_A	716	Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro	96.32
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	94.5
2yfu_A	155	Carbohydrate binding family 6; sugar binding prote	93.26
3gza_A	443	Putative alpha-L-fucosidase; NP_812709.1, structur	88.11
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	84.42

>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A

Probab=99.98  E-value=1e-32  Score=207.58  Aligned_cols=109  Identities=40%  Similarity=0.796  Sum_probs=92.7

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCC-
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDG-   79 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~-   79 (137)
                      .|..|||||+|.|||++|||||.+. ..+.|.                        +||||....+++|||+.....+. 
T Consensus        17 ~c~~pLGmesg~I~d~~itASS~~~-~~~~p~------------------------~aRL~~~~~~~aW~a~~~~~~d~~   71 (178)
T 2wuh_A           17 ICRYPLGMSGGQIPDEDITASSQWS-ESTAAK------------------------YGRLDSEEGDGAWCPEIPVEPDDL   71 (178)
T ss_dssp             TSCEECSTTTSSSCGGGEEESCCSS-GGGSGG------------------------GCBTTCCSTTSSBCCSSCBBTTBC
T ss_pred             CCCcCcccccCccCCcCEEEcCccC-cccChh------------------------hheecCCCCCCeecCCcCCCCCCC
Confidence            4999999999999999999999885 556676                        99999876678999986211255 


Q ss_pred             CceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120         80 HEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGK  135 (137)
Q Consensus        80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~  135 (137)
                      .|||||||++++.|++|+|||+.+.+...+||++|+|+||.|| ..|+.|++.++.
T Consensus        72 ~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~Dg-~~W~~y~~~~~~  126 (178)
T 2wuh_A           72 KEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG-TRWISWRNRHGK  126 (178)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESSS-SSCEECCCTTSC
T ss_pred             CCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcCC-CcEEEEecCCcc
Confidence            8999999999999999999998753223589999999999999 999999987654

>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A

Probab=99.97  E-value=2e-32  Score=202.21  Aligned_cols=103  Identities=28%  Similarity=0.477  Sum_probs=88.9

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCC--CCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDS--SSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGND   78 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~   78 (137)
                      .|..|||||+|.|||+||||||.++.  ..+.|+                        +||||.....++|||..   ++
T Consensus         4 ~C~~pLGmesg~I~d~~itASS~~~~~~~~~~p~------------------------~aRL~~~~~~~aW~a~~---~d   56 (159)
T 3hny_M            4 SCSMPLGMESKAISDAQITASSYFTNMFATWSPS------------------------KARLHLQGRSNAWRPQV---NN   56 (159)
T ss_dssp             CCCEECSTTTSSSCGGGEEESCCCBCSSCBCCGG------------------------GCBTTCCSSSCSBCCSS---CS
T ss_pred             cCcccccccCCccChHHEEEecccCCCccccChh------------------------hhhhhcCCCCCccCCCC---CC
Confidence            49999999999999999999998751  134454                        99999766678999996   67


Q ss_pred             CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      ..|||||||++++.|++|+|||+..... .+||++|+|+||.|| ..|+.|++.
T Consensus        57 ~~qwLqVDLg~~~~VtgV~tqG~~~~~~-~~~v~~y~l~yS~Dg-~~W~~~~~~  108 (159)
T 3hny_M           57 PKEWLQVDFQKTMKVTGVTTQGVKSLLT-SMYVKEFLISSSQDG-HQWTLFFQN  108 (159)
T ss_dssp             TTCCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECEET
T ss_pred             CCCeEEcccCCcEEEEEEEeecCCCCCc-cceEEEEEEEEEECC-CcEEEEecC
Confidence            8999999999999999999999864322 689999999999999 999999874

>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A

Probab=99.97  E-value=2.2e-31  Score=196.50  Aligned_cols=107  Identities=26%  Similarity=0.467  Sum_probs=89.0

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..|||||+|.|||++|||||.++ ..+.+                    .|.|.+||||..+..++|||..   ++..
T Consensus         1 ~C~~pLGme~g~I~d~~itASS~~~-~~~~~--------------------~~~p~~aRL~~~~~~~~W~a~~---~~~~   56 (160)
T 1czt_A            1 GCSTPLGMENGKIENKQITASSFKK-SWWGD--------------------YWEPFRARLNAQGRVNAWQAKA---NNNK   56 (160)
T ss_dssp             CCCEECSTTTSCSCGGGEEESCCCB-CTTSC--------------------BCCGGGCBTTCCSSSCSEECSS---CSTT
T ss_pred             CCCCCcccccCccccccEEEeeecc-cCCCc--------------------ccCcccceecCCCCCCcccCCC---CCCC
Confidence            4999999999999999999999864 11111                    1344499999865568999996   6779


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+...+. ++||++|+|+||.|| .+|+.|++..
T Consensus        57 qwLqVDLg~~~~Vt~v~tqG~~~~~~-~~~v~~y~l~yS~Dg-~~W~~~~~~~  107 (160)
T 1czt_A           57 QWLEIDLLKIKKITAIITQGCKSLSS-EMYVKSYTIHYSEQG-VEWKPYRLKS  107 (160)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECCCTT
T ss_pred             cEEEEeCCCcEEEEEEEEeCcCCCCc-ccEEEEEEEEEECCC-CcEEEEEcCC
Confidence            99999999999999999999864222 589999999999999 9999998764

>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.97  E-value=4.4e-31  Score=216.92  Aligned_cols=110  Identities=43%  Similarity=0.780  Sum_probs=94.9

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..|||||+|.|||+||||||.+. ..+.|+                        +||||.....++|||+....++..
T Consensus         5 ~C~~pLGMesG~IpDsqITASS~~~-~~~~p~------------------------~ARLn~~~~~gaW~a~~~~~~d~~   59 (351)
T 4ag4_A            5 KCRYALGMQDRTIPDSDISASSSWS-DSTAAR------------------------HSRLESSDGDGAWCPAGSVFPKEE   59 (351)
T ss_dssp             CCCEECSTTTSCSCGGGEEESCCSS-GGGCGG------------------------GCBTTCCTTTSSBCCSSCCCSSCC
T ss_pred             cCcccccccCCCcChHheEEeCcCC-CccChh------------------------hhhcccCCCCccccccccccCCCC
Confidence            5999999999999999999999886 556666                        999998766799999862223789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCee
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKE  136 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~  136 (137)
                      |||||||++++.|++|+|||+...+...+||++|+|+||.|| ..|+.|++..+.+
T Consensus        60 qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~DG-~~W~~y~d~~~~k  114 (351)
T 4ag4_A           60 EYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDG-RRWMGWKDRWGQE  114 (351)
T ss_dssp             CCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESSS-SCEEECCCTTSCC
T ss_pred             CEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeCC-CcEEEEECCCccc
Confidence            999999999999999999998754323689999999999999 9999999876654

>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A

Probab=99.97  E-value=1.6e-30  Score=201.59  Aligned_cols=102  Identities=31%  Similarity=0.477  Sum_probs=89.3

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..|||||+|.|||++|||||.++ ..+.|+                        +||||..  .++|+|..   ++..
T Consensus         5 ~C~~pLGmesg~I~D~qITASS~~~-~~~~P~------------------------~ARLn~~--~~aW~a~~---~d~~   54 (218)
T 4deq_A            5 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR   54 (218)
T ss_dssp             CSCEECSTTTTCSCGGGEEESCCSC-GGGCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred             cCCCCcccCCCCcCcccEEEeccCC-CCCChh------------------------HeEEcCC--CCeECCCC---CCCC
Confidence            4999999999999999999999886 456666                        9999975  47999996   6789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+...+. ..+||++|+|+||.|| ..|..|++..
T Consensus        55 qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~DG-~~W~~y~~~~  107 (218)
T 4deq_A           55 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEGN  107 (218)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred             CeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeCC-CceEEeecce
Confidence            99999999999999999999865321 1589999999999999 9999999853

>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A

Probab=99.97  E-value=1.3e-30  Score=191.71  Aligned_cols=101  Identities=31%  Similarity=0.514  Sum_probs=88.4

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCC------CCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccC
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSS------SVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMV   75 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~   75 (137)
                      |..|||||+|.|||++|+|||.++ .      .+.|+                        +|||+.....++|||..  
T Consensus         1 C~~pLGme~g~I~d~~itASS~~~-~~~~~~~~~~p~------------------------~arL~~~~~~~~W~~~~--   53 (158)
T 3bn6_A            1 CTEPLGLKDNTIPNKQITASSYYK-TWGLSAFSWFPY------------------------YARLDNQGKFNAWTAQT--   53 (158)
T ss_dssp             CCEECSSTTSCSCGGGEEESCCCB-GGGCGGGBCCGG------------------------GCBTTCCSSSCSEECSS--
T ss_pred             CCCCcccccCccChHhEEEecccc-cccccccccChh------------------------heEEcCCCCCCcccCCC--
Confidence            999999999999999999999875 3      45555                        99999764568999996  


Q ss_pred             CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         76 GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        76 ~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                       ++..|||||||++++.|++|+|||+...+. ..||++|+|+||.|| .+|+.|.+.
T Consensus        54 -~~~~qwlqVDLg~~~~vt~v~tqg~~~~~~-~~~v~~y~i~~S~Dg-~~W~~~~~~  107 (158)
T 3bn6_A           54 -NSASEWLQIDLGSQKRVTGIITQGARDFGH-IQYVAAYRVAYGDDG-VTWTEYKDP  107 (158)
T ss_dssp             -CCTTCCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECCCT
T ss_pred             -CCCCCEEEEeCCCceEEEEEEeeCCCCCCC-CceEEEEEEEEECCC-CceEEEEcC
Confidence             677999999999999999999999875322 479999999999999 999999985

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.95  E-value=4.4e-28  Score=209.06  Aligned_cols=104  Identities=32%  Similarity=0.460  Sum_probs=90.8

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..|||||+|.|||+||||||.++ ..+.|+                        +||||..  ++||||+.   ++..|
T Consensus       257 c~~~lgmesg~I~d~~itASS~~~-~~~~p~------------------------~aRLn~~--~~aW~~~~---~~~~q  306 (577)
T 4gz9_A          257 CMEALGMESGEIHSDQITASSQYG-TNWSVE------------------------RSRLNYP--ENGWTPGE---DSYKE  306 (577)
T ss_dssp             SCEECSTTTSSSCGGGEEESCCSC-GGGCGG------------------------GCBTTCS--SCCBCCSS---CCTTC
T ss_pred             ccccccccCCeecCcccccCCcCc-CCCCcc------------------------cccccCC--CCcccCCC---CCCCe
Confidence            889999999999999999999987 566676                        9999965  47999996   78899


Q ss_pred             eEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCCCee
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRNGKE  136 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~  136 (137)
                      ||||||++++.|++|+|||+..... ..+||++|+|+||.|| ..|..|++.++.+
T Consensus       307 wlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~dg-~~w~~y~~~~~~~  361 (577)
T 4gz9_A          307 WIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWISLKEGNKAI  361 (577)
T ss_dssp             CEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECBSSSSBC
T ss_pred             EEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEcCC-CcEEEEecCCCce
Confidence            9999999999999999999854321 2469999999999999 9999999876654

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}

Probab=99.94  E-value=1.4e-27  Score=192.74  Aligned_cols=102  Identities=29%  Similarity=0.546  Sum_probs=88.5

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCC-CCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSS-SVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDG   79 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~   79 (137)
                      .|..|||||+|.|||++|+|||.+. . .+.|.                        +||||..  .++|||+.   ++.
T Consensus         6 ~C~~pLGme~g~I~d~~itASS~~~-~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~   55 (325)
T 2qqj_A            6 QCNVPLGMESGRIANEQISASSTYS-DGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSN   55 (325)
T ss_dssp             CCCEECSTTTSCSCGGGEEESCCCT-TSSSCGG------------------------GCBTTCS--SCCBCCSS---CST
T ss_pred             cccCCcccccCccCccCEEeccccC-CCccCcc------------------------ceeecCC--CCccccCc---CCc
Confidence            4999999999999999999999886 3 46676                        9999975  47999996   678


Q ss_pred             CceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         80 HEYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      .|||||||++++.|++|+|||+.+.+. ..+||++|+|+||.|| ..|..|++..
T Consensus        56 ~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~  109 (325)
T 2qqj_A           56 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK  109 (325)
T ss_dssp             TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred             CccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcCC-cEeEEeeCCC
Confidence            999999999999999999999864211 1579999999999999 9999998753

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A

Probab=99.94  E-value=3.7e-27  Score=189.95  Aligned_cols=101  Identities=31%  Similarity=0.467  Sum_probs=88.1

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..|||||+|.|||++|||||.+. ..+.|.                        +||||..  .++|||+.   ++..
T Consensus         6 ~C~~pLGme~g~I~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~   55 (318)
T 2qqi_A            6 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR   55 (318)
T ss_dssp             SSCEECSTTTSCSCGGGEEESCCSC-GGGCGG------------------------GGBTTCS--SCCBCCSS---CCTT
T ss_pred             cCCCCcCccCCCcchHHEEEeecCC-CcCChh------------------------hhhhcCC--CCeEcCCC---CCCC
Confidence            4999999999999999999999886 456666                        9999975  47999996   6789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      |||||||++++.|++|+|||+.... ...+||++|+|+||.|| ..|..|++.
T Consensus        56 qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~Dg-~~W~~~~~~  107 (318)
T 2qqi_A           56 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEG  107 (318)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEET
T ss_pred             ceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecCC-CeEEEEeCC
Confidence            9999999999999999999986421 11589999999999999 999999875

>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*

Probab=99.92  E-value=4.2e-25  Score=174.35  Aligned_cols=96  Identities=13%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             CcccccCC-CcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC--------CCCcCCCCcc
Q psy17120          4 GALGLENG-VIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK--------NGGAWCPKHM   74 (137)
Q Consensus         4 ~~LGm~~g-~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~--------~~~aW~~~~~   74 (137)
                      .|+||.++ .|||++|+|||.++ ..+.|+                        +||||...        ..++|||+. 
T Consensus         3 ~~~~~~~~~~I~d~~itASS~~~-~~~~p~------------------------~aRLn~~~~~~~~~~~~~~~W~a~~-   56 (257)
T 2vm9_A            3 VPAGSVSCLANALLNLRSSTDYN-ADHGVK------------------------NSILNFSNSKDASRFDGSESWSSSV-   56 (257)
T ss_dssp             ---CCEETTTTTCSEEEESCCSS-GGGSGG------------------------GCBTTCCCCCCTTSCCCCSSEECSS-
T ss_pred             CcccceecccccccCEEEcccCC-CCCCcC------------------------eEEeCCcccccccccCCCCeeeCCC-
Confidence            47899999 69999999999986 567777                        99999852        358999996 


Q ss_pred             CCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         75 VGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        75 ~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                        ++..|||||||++++.|++|+|||+.+.   ++||++|+|+||.|| ..|..|++
T Consensus        57 --~d~~qwLqVDLg~~~~Vt~V~tQG~~~~---~~~vt~Y~l~yS~Dg-~~W~~y~~  107 (257)
T 2vm9_A           57 --LDKNQFIVAGSDSVKHFVAISTQGRGDH---DQWVTSYKLRYTLDN-VNWVEYNN  107 (257)
T ss_dssp             --CSTTCCEEEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS-SCEEEGGG
T ss_pred             --CCCCcEEeecCCCcEEEEEEEEeCCccC---CceEEEEEEEEEcCC-CcEEEEcC
Confidence              6789999999999999999999999753   689999999999999 99999987

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}

Probab=99.91  E-value=9.1e-25  Score=176.32  Aligned_cols=106  Identities=27%  Similarity=0.507  Sum_probs=88.5

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||.++ ..+.|.                        +|||+..  ..+|||.....++..
T Consensus       163 ~c~~plGm~sg~I~d~~itASS~~~-~~~~p~------------------------~arL~~~--~~~W~~~~~~~~~~~  215 (325)
T 2qqj_A          163 PCSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGE  215 (325)
T ss_dssp             TTCEECSTTTSCSCGGGEEESCCCC--CCCGG------------------------GGBTTTC--SSCBCCSSSSCCTTT
T ss_pred             eeccccccccccCCCcccccccccC-cccCcc------------------------hhhhccC--CCccccccccCCCcc
Confidence            3889999999999999999999876 456676                        9999875  478999732235789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      |||||||+.++.|++|+|||+.+.+     ....||++|+|+||.|| ..|+.|++.++
T Consensus       216 qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~dg-~~W~~~~~~~~  273 (325)
T 2qqj_A          216 EWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT  273 (325)
T ss_dssp             CCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESSS-SSCEECEETTT
T ss_pred             ceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeCC-CCeEEEecCCC
Confidence            9999999999999999999987310     12689999999999999 99999998654

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.91  E-value=4.9e-25  Score=190.04  Aligned_cols=104  Identities=26%  Similarity=0.481  Sum_probs=88.3

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..||||++|.|||++|+|||.++ ..+.|.                        +|||+...  .+|++.....++..|
T Consensus       413 c~~plGm~~g~I~d~~itASS~~~-~~~~p~------------------------~aRL~~~~--~~w~~~~~~~~~~~q  465 (577)
T 4gz9_A          413 CSGMLGMVSGLISDSQITASNQAD-RNWMPE------------------------NIRLVTSR--TGWALPPSPHPYTNE  465 (577)
T ss_dssp             SCEECSTTTSSSCGGGEEETTTTS-TTCCGG------------------------GGBTTTCS--SCEEECCCSSCCCSC
T ss_pred             CcccccccccccCCCccccccccC-CCcChh------------------------heeecCCC--CCcccccCCCCCCCc
Confidence            889999999999999999999987 567777                        99998763  566655322356789


Q ss_pred             eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      ||||||++++.|++|+|||+..... .+||++|+|+||.|| ..|+.|++..+
T Consensus       466 wLqVDLg~~~~VtgV~tQG~~~~~~-~~~vtsY~l~yS~Dg-~~W~~~~~~~~  516 (577)
T 4gz9_A          466 WLQVDLGDEKIVRGVIIQGGKHREN-KVFMRKFKIAYSNNG-SDWKTIMDDSK  516 (577)
T ss_dssp             CEEEEEEEEEEEEEEEEECEESSSC-EECEEEEEEEEESSS-SSCEECBCTTS
T ss_pred             eEEEECCCcEEEEEEEEeCCCCCCc-ceeEEEEEEEEECCC-CCeEEEEcCCC
Confidence            9999999999999999999875432 579999999999999 99999998655

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=180.04  Aligned_cols=105  Identities=28%  Similarity=0.521  Sum_probs=88.4

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..||||++|.|+|++|+|||.++ ..+.|.                        +|||+..  ..+|||+....++..|
T Consensus       293 c~~~lGm~sg~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~q  345 (460)
T 2qqo_A          293 CSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGEE  345 (460)
T ss_dssp             TCEECSTTTSCSCGGGEEESCCCS-SSCCGG------------------------GGBTTTC--SSCBCCSSSSCCTTTC
T ss_pred             ccceeccccCCCCccccccccCCC-cccCcc------------------------hhhhccC--CCCcccccccCCCccc
Confidence            889999999999999999999876 456666                        9999875  4789997322357799


Q ss_pred             eEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      ||||||++++.|++|+|||+.+.+     ....||++|+|+||.|| ..|+.|++..+
T Consensus       346 wLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~dg-~~W~~~~~~~~  402 (460)
T 2qqo_A          346 WLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT  402 (460)
T ss_dssp             CEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESSS-SSCEECEETTT
T ss_pred             eEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeCC-CceEEEECCCC
Confidence            999999999999999999987310     12589999999999999 99999998655

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A

Probab=99.90  E-value=3e-24  Score=172.99  Aligned_cols=104  Identities=22%  Similarity=0.458  Sum_probs=87.0

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||.++ ..+.|.                        +|||+..  ..+||+.....++..
T Consensus       162 ~c~~plGmesg~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~a~~~~~~  214 (318)
T 2qqi_A          162 PCSGMLGMVSGLISDSQITSSNQGD-RNWMPE------------------------NIRLVTS--RSGWALPPAPHSYIN  214 (318)
T ss_dssp             TTCEECSTTTSCSCGGGEEETTTTS-TTCCGG------------------------GGBTTCC--CCSCSBCCCTTCCSC
T ss_pred             cccccccccCCcccccccccccccc-cccCch------------------------hhhhccc--CCceeCcccccCCcC
Confidence            3889999999999999999999876 566677                        9999875  478996411125678


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|++..
T Consensus       215 qwLqVDLg~~~~Vt~V~tqg~~~~~-~~~~v~~Y~l~~S~dg-~~W~~~~~~~  265 (318)
T 2qqi_A          215 EWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDDS  265 (318)
T ss_dssp             CCEEEEEEEEEEEEEEEEEECCCTT-CCCCCCCEEEEEESSS-SSCEECBCTT
T ss_pred             cEEEEeCCCceEEEEEEEcCccCCC-CCeEEEEEEEEEECCC-CCEEEEEcCC
Confidence            9999999999999999999986532 2589999999999999 9999998753

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.89  E-value=1.5e-23  Score=175.27  Aligned_cols=104  Identities=22%  Similarity=0.458  Sum_probs=87.0

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||.++ ..+.|.                        +|||+..  ..+||+.....++..
T Consensus       294 ~c~~plgme~g~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~  346 (450)
T 2qqm_A          294 PCSGMLGMVSGLISDSQITSSNQGD-RNWMPE------------------------NIRLVTS--RSGWALPPAPHSYIN  346 (450)
T ss_dssp             TTCEECSTTTSCSCGGGEEETTTTS-TTCCGG------------------------GGBTTTC--SSCEEECCCSSCCCS
T ss_pred             ccccccccCCCCccccccccccccc-cccCch------------------------hhhcccc--CCcccccccccCCcC
Confidence            3889999999999999999999876 566676                        9999875  478995311125678


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|++..
T Consensus       347 qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~Y~i~~S~dg-~~W~~~~~~~  397 (450)
T 2qqm_A          347 EWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDDS  397 (450)
T ss_dssp             CCEEEEEEEEEEEEEEEEECCSCTT-TCCCEEEEEEEEESSS-SSCEECBCTT
T ss_pred             ceEEEeCCCcEEEEEEEecCccCCC-CcEEEEEEEEEEECCC-CcEEEEEcCC
Confidence            9999999999999999999986532 1589999999999999 9999998753

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=99.89  E-value=8.3e-24  Score=184.00  Aligned_cols=108  Identities=25%  Similarity=0.458  Sum_probs=89.6

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||... ..++.                    .|.|.+|||+.++..++|||..   ++..
T Consensus       488 ~c~~plGmesg~I~d~~itASS~~~-~~~~~--------------------~~~p~~arL~~~g~~~~W~a~~---~~~~  543 (647)
T 1sdd_B          488 GCSTPLGMESGKIENKQITASSFKK-SWWGN--------------------YWEPFLARLNAQGRVNAWQAKA---NNNN  543 (647)
T ss_dssp             SCCSBCSTTTSSSCSTTEEESCCCE-ETTTE--------------------ECCGGGCBSSCCSSSCSEECSS---CSSC
T ss_pred             ccccccCccCCccCCCceeeccccc-ccccc--------------------ccCccccccccCCCcccccCCC---CCCC
Confidence            3899999999999999999999753 11111                    2445599999866668999985   6779


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      |||||||++++.|++|+|||+...+. ..||++|+|+||.|| .+|+.|++..+
T Consensus       544 qwLqVDLg~~~~vt~v~tqg~~~~~~-~~~v~~y~l~~S~dg-~~W~~~~~~~~  595 (647)
T 1sdd_B          544 QWLQIDLLKIKKITAIVTQGCKSLSS-EMYVKSYTIHYSDQG-TDWKPYREKSS  595 (647)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEECEEEESSS-SCCEECCCSSC
T ss_pred             cEEEEeCCCceEEEEEEeecCCCCCC-CcceEEEEEEEECCC-CcEEEEEcCCC
Confidence            99999999999999999999864322 589999999999999 99999998654

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.89  E-value=1.7e-23  Score=179.85  Aligned_cols=106  Identities=27%  Similarity=0.507  Sum_probs=87.1

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||.++ ..+.|.                        +|||+..  ..+|+|+....++..
T Consensus       411 ~c~~~lGm~~g~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~  463 (579)
T 2qqk_A          411 PCSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGE  463 (579)
T ss_dssp             SSCEECSTTTSSSCGGGEEESCCCC---CCGG------------------------GGBTTTC--SSCBCCSSTTCCTTT
T ss_pred             cceeccccccCcccccceecccCCC-cccCch------------------------hheeccc--CcCCcccccccCCcc
Confidence            3889999999999999999999876 456666                        9999875  468999732235779


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      |||||||++++.|++|+|||+.+.+     ....||++|+|+||.|| ..|+.|++..+
T Consensus       464 qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S~dg-~~W~~~~~~~~  521 (579)
T 2qqk_A          464 EWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT  521 (579)
T ss_dssp             CCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEESSS-SCCEECBCTTT
T ss_pred             ceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEEcCC-CceeEEEcCCC
Confidence            9999999999999999999987310     12589999999999999 99999998654

>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*

Probab=99.88  E-value=6.4e-23  Score=161.78  Aligned_cols=95  Identities=18%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             CcccccCC-CcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC-------CCCcCCCCccC
Q psy17120          4 GALGLENG-VIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK-------NGGAWCPKHMV   75 (137)
Q Consensus         4 ~~LGm~~g-~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~-------~~~aW~~~~~~   75 (137)
                      .|.||..+ .|||++|+|||.++ ..+.|+                        +||||...       ..++|||+.  
T Consensus         3 ~~~g~v~~~~i~d~~itASS~~~-~~~~p~------------------------~aRLn~~~~~~~~~~~~~aW~a~~--   55 (254)
T 2wn3_A            3 STQGLVQLLANAQCHLRTSTNYN-GVHTQF------------------------NSALNYKNNGTNTIDGSEAWCSSI--   55 (254)
T ss_dssp             GGTTSEETTTTTCSEEEESCCSS-TTSSGG------------------------GCBTTCCCCTTCGGGCCSSEECSS--
T ss_pred             CcccceeccccCCCCEEEcccCC-CCCCcc------------------------eEEeCCcccccccCCCCCeeeCCC--
Confidence            36799998 59999999999986 677787                        99999753       368999996  


Q ss_pred             CCCCCceEEeecCe--eEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         76 GNDGHEYIEVNLHD--LHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        76 ~~~~~~wLQVDL~~--~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                       ++..|||  ||++  ++.|++|+|||+...   ++||++|+|+||.|| ..|..|++.
T Consensus        56 -~d~~qwL--DLg~~~~~~VtgV~tQG~~~~---~~~VtsY~l~yS~dg-~~W~~y~~~  107 (254)
T 2wn3_A           56 -VDTNQYI--VAGCEVPRTFMCVALQGRGDA---DQWVTSYKIRYSLDN-VSWFEYRNG  107 (254)
T ss_dssp             -CSTTCCE--EEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS-SSCEEGGGG
T ss_pred             -CCchheE--EcCCCeEEEEEEEEEeCCCCC---CCceEEEEEEEECCC-CcEEEecCC
Confidence             6889999  9999  999999999999753   689999999999999 999999873

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.88  E-value=7.7e-23  Score=175.68  Aligned_cols=103  Identities=29%  Similarity=0.542  Sum_probs=87.9

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|.+|+|||.+....+.|.                        +||||..  ..+|||..   ++..
T Consensus       254 ~C~~~lg~~~g~I~d~qitaSS~~~~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~  304 (579)
T 2qqk_A          254 QCNVPLGMESGRIANEQISASSTYSDGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSNK  304 (579)
T ss_dssp             CSCEECSTTTSSSCGGGEEESCCCTTSCSCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred             eEeccccccccccccccceeeeeecccccCcc------------------------hhhccCC--CceecCCC---CCCC
Confidence            49999999999999999999998751145555                        9999975  47999996   6789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+...+. ...||++|+|+||.|| ..|..|++..
T Consensus       305 qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~  357 (579)
T 2qqk_A          305 EYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK  357 (579)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred             ceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECCC-CceeeeecCC
Confidence            99999999999999999999864211 1579999999999999 9999999754

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.6e-22  Score=169.75  Aligned_cols=103  Identities=29%  Similarity=0.542  Sum_probs=87.2

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..+|||++|.|+|++|+|||.+....+.|.                        +||||..  ..+|||..   ++..
T Consensus       135 ~C~~~lg~~~G~I~d~~itaSS~~~~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~  185 (460)
T 2qqo_A          135 QCNVPLGMESGRIANEQISASSTYSDGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSNK  185 (460)
T ss_dssp             -CCEECSTTTSCSCGGGEEESCCCTTSSSCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred             ecccccccccccccccceeeeeeccCcccChh------------------------hhhhcCC--CceeeCCC---CCcc
Confidence            39999999999999999999998751135555                        9999975  47999996   6789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||+.++.|++|+|||+...+ ....||++|+|+||.|| ..|..|++..
T Consensus       186 ~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~  238 (460)
T 2qqo_A          186 EYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK  238 (460)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred             eeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcCC-CCeeEecCCC
Confidence            9999999999999999999986431 11579999999999999 9999998753

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=99.87  E-value=3.8e-23  Score=183.78  Aligned_cols=105  Identities=27%  Similarity=0.419  Sum_probs=89.0

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|+|++|+|||.++ ...                     ..|.|.+|||+..+..++|||..   ++..
T Consensus       611 ~c~~PLGmesg~I~d~qitASS~~~-~~~---------------------~~~~P~~ARL~~~~~~~aW~a~~---~d~~  665 (770)
T 2r7e_B          611 SCSMPLGMESKAISDAQITASSYFT-NMF---------------------ATWSPSKARLHLQGRSNAWRPQV---NNPK  665 (770)
T ss_dssp             TCCCCCSTTSSCSCTTSCCBSCCCB-CSS---------------------CBCCGGGCBTTCCSTTCSBCCSS---CCSS
T ss_pred             ccccCcccccccccccceEEccccC-CCc---------------------ccccccceeecCCCCCceEECCC---CCCC
Confidence            3889999999999999999999875 211                     12445599999876678999996   6789


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      |||||||++++.|++|+|||+.+... ..||++|+|.||.|| .+|..|++.
T Consensus       666 qwLQVDLg~~~~VtgV~tQG~~~~~~-~~~VtsY~l~yS~DG-~~W~~y~~~  715 (770)
T 2r7e_B          666 EWLQVDFQKTMKVTGVTTQGVKSLLT-SMYVKEFLISSSQDG-HQWTLFFQN  715 (770)
T ss_dssp             CCEEECCSSCCCBCCEEECCCCCTTC-CCCCCEEEECCBSST-TCBCCCBCS
T ss_pred             ceEEEccccceEEEEEEEeCCcCcCc-ccceEEEEEEEEcCC-CcEEEEecC
Confidence            99999999999999999999875322 689999999999999 999999864

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=99.87  E-value=2e-22  Score=175.35  Aligned_cols=105  Identities=27%  Similarity=0.451  Sum_probs=88.2

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCC-CCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVG-NDG   79 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~-~~~   79 (137)
                      .|..||||++|.|+|++|+|||...  .+.|+                        +||||.....++|||+.... .+.
T Consensus       329 ~c~~Plg~~~g~I~~~~i~asS~~~--~~~p~------------------------~arl~~~~~~~~W~~~~~~~~~~~  382 (647)
T 1sdd_B          329 ECKMPMGLSTGLIADSQIQASEFWG--YWEPK------------------------LARLNNGGSYNAWIAEKLSTEFNP  382 (647)
T ss_dssp             TCCEECSTTTSCSCGGGEEESCCST--TCCGG------------------------GCBTTCCSSSCSEECSCCCCSSCC
T ss_pred             cccccccccCCcccccccccccccc--ccccc------------------------eeeecCCCCcccccCCCCcccccc
Confidence            4999999999999999999999864  56777                        99999865567999986210 023


Q ss_pred             CceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         80 HEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      .|||||||++++.|++|+|||+.... ..+||++|+|+||.|| ..|..|++..
T Consensus       383 ~qwlqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~i~yS~Dg-~~W~~~~~~~  434 (647)
T 1sdd_B          383 EPWIQVDMQKEVLLTGIQTQGAKHYL-KPYYTTEFCVAYSLDR-KNWRIFKGNS  434 (647)
T ss_dssp             CSCEEEEEEEEEEEEEEEEECEESSS-SEEEEEEEEEEEESSS-SSCEECCSSC
T ss_pred             cceEEeccCCeEEEEEEEEcCCCCCC-CccEEEEEEEEEEcCC-CceEEecccC
Confidence            79999999999999999999986421 2689999999999999 9999998754

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.87  E-value=2.3e-22  Score=168.17  Aligned_cols=102  Identities=31%  Similarity=0.474  Sum_probs=87.8

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..+|||++|.|+|.+|+|||.+. ..+.|.                        +||||..  .++|||+.   ++..
T Consensus       138 ~C~~~lg~~~g~I~~~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~  187 (450)
T 2qqm_A          138 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR  187 (450)
T ss_dssp             CSCEECSTTTSCSCGGGEEESCCSC-GGGCGG------------------------GGBTTCS--SCCBCCSS---CSTT
T ss_pred             ccCcccccccccccccccccccccc-ccchhh------------------------ccccccC--CCCccCCC---CCCC
Confidence            4999999999999999999999876 456666                        9999975  47899985   6779


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+.... ...+||++|+|+||.|| ..|..|++..
T Consensus       188 qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~  240 (450)
T 2qqm_A          188 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEGN  240 (450)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSEEECBSSS
T ss_pred             ceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCCC-CceeEEeCCC
Confidence            9999999999999999999986521 11479999999999999 9999998753

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=99.83  E-value=3.8e-21  Score=170.92  Aligned_cols=99  Identities=27%  Similarity=0.505  Sum_probs=86.8

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..||||++|.|||.+|+|||.+.  .+.|.                        +||||..+..++||+.     +..
T Consensus       458 ~C~~plgm~~g~I~d~~ItASS~~~--~~~p~------------------------~arL~~~~~~~aW~~~-----~~~  506 (770)
T 2r7e_B          458 KCQTPLGMASGHIRDFQITASGQYG--QWAPK------------------------LARLHYSGSINAWSTK-----EPF  506 (770)
T ss_dssp             SCCCBCCSSSSSSCTTSCCCSCCSS--SCCTT------------------------CCSSCCSTTCSSEECC-----SSC
T ss_pred             ccccccccccccccceEEeeccccC--ccchh------------------------eEEECCCCCccccccC-----CCC
Confidence            4999999999999999999999885  46777                        9999987556899984     468


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      |||||||++++.|++|+|||+.... ..+||++|+|+||.|| ..|..|++.
T Consensus       507 qwLQVDLg~~~~Vt~V~tQG~~~~~-~~~~v~sY~I~yS~DG-~~W~~y~~~  556 (770)
T 2r7e_B          507 SWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSLDG-KKWQTYRGN  556 (770)
T ss_dssp             CCEEEEEEEEEEECBCCCCCEECSS-SEECCSEEEEEEESSS-SSCBCCCCS
T ss_pred             ceEEecCCceEEEEEEEEcccCcCC-cccceEEEEEEEecCC-CccEEeecc
Confidence            9999999999999999999986421 2589999999999999 999999864

>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*

Probab=99.78  E-value=1.7e-19  Score=136.70  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             CCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC-CCCcCCCCcc-CCCCCCceEEeecC
Q psy17120         11 GVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK-NGGAWCPKHM-VGNDGHEYIEVNLH   88 (137)
Q Consensus        11 g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~-~~~aW~~~~~-~~~~~~~wLQVDL~   88 (137)
                      +.|+|+||+||+... ..+.                     .|.|..|||+... ..++|||..+ ..++..|||||||+
T Consensus        16 ~~~~~~~~~assi~s-s~w~---------------------~~~p~~arL~dg~~~t~aW~a~~~~~~~~~~qwLQVDLg   73 (192)
T 2w1s_A           16 PRGSHMASNPSLIRS-ESWQ---------------------VYEGNEANLLDGDDNTGVWYKTLNGDTSLAGEFIGLDLG   73 (192)
T ss_dssp             --------CCEEEEC-TTCE---------------------EEEECGGGGSSSCTTCCEEEECHHHHCBCTTCEEEEEEE
T ss_pred             ccCccccccceEEec-cccc---------------------ccCChHHheeCCCCCcCEEeCCcccccCCCCceEEEECC
Confidence            478999999999865 3221                     2455599999743 2359999310 01577999999999


Q ss_pred             eeEEEEEE-EeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         89 DLHIVTGV-QLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        89 ~~~~ItgI-~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      +++.|++| +|||+...+. ..||++|+|+||.|| ..|..|.+.
T Consensus        74 ~~~~VtgV~~tQG~~~~~~-~~~vt~Y~l~yS~DG-~~W~~~~~~  116 (192)
T 2w1s_A           74 KEIKLDGIRFVIGKNGGGS-SDKWNKFKLEYSLDN-ESWTTIKEY  116 (192)
T ss_dssp             EEEEEEEEEEEECCSSTTT-TCCCSEEEEEEESSS-SSCEEEEEE
T ss_pred             CeEEEEEEEEEcCCCCCCC-CCeEEEEEEEEEcCC-CCeEEEecC
Confidence            99999999 9999875322 479999999999999 999999875

>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}

Probab=99.56  E-value=9.6e-15  Score=102.86  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCC---CCcCCCCccCCCC
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKN---GGAWCPKHMVGND   78 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~---~~aW~~~~~~~~~   78 (137)
                      |..||  +++.|||++|+||+... ....|.                        .++|+.+..   ..+||+..    .
T Consensus         2 ~~~P~--~~~~i~~~~~tasss~~-~~~~~~------------------------~~~~Dg~~~t~w~~~w~~~~----~   50 (143)
T 2v72_A            2 MASAI--IETAIPQSEMTASATSE-EGQDPA------------------------SSAIDGNINTMWHTKWNGSD----A   50 (143)
T ss_dssp             -------CCCBCCGGGCEEEESSC-BTTBCG------------------------GGGSSSCTTCCEECCTTSCS----C
T ss_pred             ccccc--cccccChhhcEEEEecc-cCCChH------------------------HhccCCCCCCceecCCCCCC----C
Confidence            66777  68999999999999764 333444                        677876532   35788763    3


Q ss_pred             CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEe
Q psy17120         79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRW  129 (137)
Q Consensus        79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y  129 (137)
                      ..+||||||++++.|++|.+|++...  ...|++.|+|.||.|| .. +.+
T Consensus        51 ~~~~l~vDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~-~~v   97 (143)
T 2v72_A           51 LPQSLSVNLGKARKVSSIAITPRTSG--NNGFITKYEIHAINNG-VE-TLV   97 (143)
T ss_dssp             SCEEEEEEEEEEEEEEEEEEECCSSC--CTTCEEEEEEEEEETT-EE-EEE
T ss_pred             CCEEEEEECCCCeEEeEEEEEecccC--CCCCEEEEEEEEEcCC-Cc-cEE
Confidence            68999999999999999999998642  1579999999999999 66 654

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=99.15  E-value=8.7e-11  Score=82.81  Aligned_cols=79  Identities=10%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             CCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEE
Q psy17120         16 KDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTG   95 (137)
Q Consensus        16 ~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~Itg   95 (137)
                      ..++|||......+.|.                        +++....  ...|++..    +  +||||||++++.|++
T Consensus        11 ~~vtASs~~~~~~~~~~------------------------~a~Dg~~--~t~W~~~~----~--~~l~vDLg~~~~v~~   58 (145)
T 2jda_A           11 VAVTASGYDSEKGHVPA------------------------NIADGDV--KTRWAASG----E--SWVQLELDKEQSIEN   58 (145)
T ss_dssp             EEEEESCCBTTTTBCGG------------------------GGGSSCT--TCCEEEES----S--EEEEEEEEEEEEEEE
T ss_pred             EEEEEeecccCCCCCch------------------------hcccCCC--CCeECCCC----C--eeEEEECCCceEEEE
Confidence            56899997621345555                        6654432  47899973    3  999999999999999


Q ss_pred             EEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         96 VQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        96 I~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      |.+|++..    ..+++.|+|.+|.|| ..|..+.+
T Consensus        59 v~i~~~~~----~~~~~~~~i~~S~Dg-~~w~~~~~   89 (145)
T 2jda_A           59 ILIVPFKP----TERKLKFSIFYSNDG-KNWQPLAE   89 (145)
T ss_dssp             EEEEESST----TTCCEEEEEEEESSS-SSCEEEEE
T ss_pred             EEEEeccC----CCceEEEEEEEeCCC-CceEEeee
Confidence            99998743    469999999999999 99999865

>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*

Probab=98.93  E-value=1.2e-08  Score=71.56  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      .+||+..   .+..+||+|||++++.|++|.+|++.+.  ...+++.|+|.+|.|| ..|..+..
T Consensus        42 s~~~~~~---~~~~~~l~iDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~w~~v~~  100 (150)
T 2j1a_A           42 SKWSSPA---HEGPHHLTLELDNVYEINKVKYAPRQDS--KNGRITGYKVSVSLDG-ENFTEVKT  100 (150)
T ss_dssp             CCCSSSC---CCSCCEEEEEEEEEEEEEEEEEECCSSC--CTTEEEEEEEEEESSS-SSEEEEEE
T ss_pred             ccccCCC---CCCCeEEEEECCCCeEEeEEEEeecCCC--CCCCEEEEEEEEEcCC-CceEEEEE
Confidence            3677642   4568999999999999999999998542  1479999999999999 99998753

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=98.89  E-value=1.4e-08  Score=73.87  Aligned_cols=63  Identities=13%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             CCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         66 GGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        66 ~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ...|.+.........+||+|||++++.|++|.++++.+..  ..+++.|+|.+|.|| .+|..+.+
T Consensus        56 ~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~--~~~~~~y~I~~S~DG-~~W~~v~~  118 (161)
T 4a41_A           56 NTIWHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAK--NGNITKYELHVSEDG-NNFRKISE  118 (161)
T ss_dssp             TCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEECCSSCC--TTCEEEEEEEEESSS-SCEEEEEE
T ss_pred             CCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEEecCCCC--CCcEEEEEEEEECCC-CceEEeee
Confidence            4567765311123578999999999999999999876432  478999999999999 99998864

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A

Probab=98.82  E-value=8.1e-09  Score=93.26  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=63.7

Q ss_pred             CCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEE
Q psy17120         15 DKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVT   94 (137)
Q Consensus        15 d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~It   94 (137)
                      ...++|||...  .+.|.                        +|+-..  ..+.|++.     +..+||||||++++.|+
T Consensus        30 gk~vTASS~~~--g~~p~------------------------nAvDGn--~~T~WsS~-----~~~qWLqVDLG~~~~V~   76 (914)
T 4a4a_A           30 GVTVTAKGNTE--GNTAD------------------------LAIDGD--LSTYWESS-----NDYKWIEVDLGGIYELS   76 (914)
T ss_dssp             SCEEEESCCCT--TCCGG------------------------GGSSSC--TTCCEECC-----SSCCEEEEEEEEEEEEE
T ss_pred             CCceEEeccCC--CCcHH------------------------HeECCC--CCCeEecC-----CCCceEEEECCCeEEEE
Confidence            46799999864  46676                        666433  35889997     34699999999999999


Q ss_pred             EEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         95 GVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        95 gI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      +|++|+.      ..++++|+|++|.|| .+|+.+.+..
T Consensus        77 ~V~l~~~------~~~v~~Y~Ie~S~DG-~~Wt~v~~~t  108 (914)
T 4a4a_A           77 KIEIFNK------DEAVYKYNIYASEDG-ENFNKIAYKN  108 (914)
T ss_dssp             EEEEECS------SSSCEEEEEEEESSS-SCCEEEEEEC
T ss_pred             EEEEEec------CCceEEEEEEEEcCC-CCeEEEEEcc
Confidence            9999972      256899999999999 9999997643

>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=2.1e-08  Score=84.90  Aligned_cols=86  Identities=9%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             CCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEE
Q psy17120         14 PDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIV   93 (137)
Q Consensus        14 ~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~I   93 (137)
                      ....++|||... ..+.|.                        ++  ......+.|++..   ++..+||||||+++..|
T Consensus       329 ~~~~vtASS~~~-~~~~~~------------------------~a--~Dgd~~TyW~a~~---~~~~~wl~vDLg~~~~v  378 (469)
T 3eyp_A          329 RGAKVKATNVRG-AKYSPE------------------------KM--LDNEKNTYFAGKD---GEVKADIIFTLPKTIEF  378 (469)
T ss_dssp             TTCEEEESSCCC-GGGCGG------------------------GG--GSCCSSCCEECCT---TCCCEEEEEEEEEEEEE
T ss_pred             cCCceEEeeccC-CCCChh------------------------hc--ccCCCCceEeCCC---CCCCcEEEEECCCCcEE
Confidence            346789999765 345554                        43  3334468999985   66789999999999999


Q ss_pred             EEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         94 TGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        94 tgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      ..|++|.....   .++|++|+|.+|.|| ..|+.+.+.+
T Consensus       379 n~V~lqe~i~~---gqrv~~y~Ve~s~DG-~~W~~v~~gt  414 (469)
T 3eyp_A          379 DCLMIEEVIEL---GHRTTKWSVEYTVDG-KNWITIPEAT  414 (469)
T ss_dssp             EEEEEEECGGG---CSCEEEEEEEEESSS-SCCEECGGGS
T ss_pred             eEEEEeecccC---CCCeEEEEEEEEcCC-CceEEEEecc
Confidence            99999987543   479999999999999 9999987543

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=2.2e-07  Score=67.77  Aligned_cols=63  Identities=11%  Similarity=0.071  Sum_probs=49.4

Q ss_pred             CCcCCCCccC-CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         66 GGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        66 ~~aW~~~~~~-~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ...|.+.-.. .....+||+|||++++.|++|.++++.+..  ..+++.|+|.+|.|| ..|..+.+
T Consensus        49 ~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~I~~S~Dg-~~W~~v~~  112 (169)
T 3ggl_A           49 ETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGS--NNPIKVVEFAASEDN-VNWTPIGR  112 (169)
T ss_dssp             SCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SCCEEEEE
T ss_pred             CCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEEecCCCC--CCCeeEEEEEEeCCC-CCcEEeEE
Confidence            4567664210 023578999999999999999999986432  478999999999999 99998864

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=98.60  E-value=2.4e-07  Score=66.68  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             CCcCCCCccCC-CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         66 GGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        66 ~~aW~~~~~~~-~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ...|.+..... ....+||+|||++++.|++|.++++....  ..+++.|+|.+|.|| ..|..+.+
T Consensus        39 ~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~--~~~~~~~~I~~S~Dg-~~W~~v~~  102 (159)
T 3f2z_A           39 ETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGS--NNPIKVVRFEASEDG-TNWESIGQ  102 (159)
T ss_dssp             TCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SSCEEEEE
T ss_pred             CCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEEEecCCCC--CCCeeEEEEEEEcCC-CCeEEeEE
Confidence            46687653100 23578999999999999999999886432  468999999999999 99998864

>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}

Probab=98.54  E-value=1.2e-07  Score=68.41  Aligned_cols=55  Identities=11%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120         65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK  130 (137)
Q Consensus        65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~  130 (137)
                      ....|++..   + ..+|+||||++++.|++|.+|..      .++++.|+|.+|.|| ..|+.+.
T Consensus        51 ~~T~W~s~~---~-~~p~~~VDLg~~~~V~~v~i~~~------r~~v~~y~I~~S~DG-~~W~~~~  105 (149)
T 4a42_A           51 ENTLWVPGQ---E-EEKSVTFDLSKEKDISAIDIVSK------GNSPLKYSIEISNDG-TEWTKIV  105 (149)
T ss_dssp             TTSCBCCCS---C-SSEEEEEEEEEEEECCEEEEEEC------SSSCCCEEEEEESSS-SSCEEEE
T ss_pred             CCCEEEcCC---C-CCCeEEEECCCcEEEEEEEEEcC------CCCcEEEEEEEEcCC-CeEeEeE
Confidence            457899974   3 67788999999999999999521      134899999999999 9999864

>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*

Probab=98.50  E-value=6.5e-07  Score=65.61  Aligned_cols=61  Identities=8%  Similarity=0.055  Sum_probs=49.2

Q ss_pred             CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      ....|++..   .+..+||||||+.++.|.+|.++=..     ....+.|+|+.|.|| .+|..+.+..+
T Consensus        54 ~~T~W~s~~---~~~~~Wi~VDLg~~~~v~~v~i~~~~-----~~~~~~y~IevS~Dg-~~W~~v~~~t~  114 (161)
T 4a3z_A           54 LSSLWISDN---GAMPANATIDLEGNNFVDFLELHFEK-----EGFRFQFKVEVEDES-GNRETVLDMTS  114 (161)
T ss_dssp             TTCCEEBGG---GCSSEEEEEEEEEEEEEEEEEEECSS-----TTCCEEEEEEEECTT-CCEEEEEECTT
T ss_pred             CCCeEEcCC---CCCCeEEEEECCCcEEEeEEEEEECC-----CCceEEEEEEEEcCC-CCEEEEEEecC
Confidence            457899874   45789999999999999999987432     234579999999999 99999876543

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=98.43  E-value=7e-07  Score=79.12  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      .+..+||||||++++.|++|.+|++.+..  ..+|+.|+|.+|.|| .+|+.+.+
T Consensus       636 ~~~p~wl~VDLg~~~~V~~V~i~~r~~~~--~g~v~~y~I~~S~DG-~~W~~v~~  687 (737)
T 2v5d_A          636 HEGPHHLTLELDNVYEINKVKYAPRQDSK--NGRITGYKVSVSLDG-ENFTEVKT  687 (737)
T ss_dssp             CCCCCEEEEEEEEEEEEEEEEEECCSSCC--TTEEEEEEEEEESSS-SCCCCSEE
T ss_pred             CCCCeEEEEECCCcEEEEEEEEEeccCCC--CCceEEEEEEEEcCC-CceEEEEe
Confidence            35689999999999999999999986421  469999999999999 99988753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.37  E-value=8.2e-07  Score=76.22  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCcCCCCccC--CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCc-EEe
Q psy17120         66 GGAWCPKHMV--GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKW-RRW  129 (137)
Q Consensus        66 ~~aW~~~~~~--~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W-~~y  129 (137)
                      ...|++....  .....+||||||++++.|++|.++.+...+. ..+++.|+|.+|.|| .+| +.+
T Consensus        53 ~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~-~~~~~~y~i~~S~Dg-~~w~~~v  117 (656)
T 1k3i_A           53 DTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQ-NGWIGRHEVYLSSDG-TNWGSPV  117 (656)
T ss_dssp             TCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEECCCSSCC-TTCBCEEEEEEESSS-SCCCSCS
T ss_pred             CCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEecccCCC-CCCeeEEEEEEECCC-CCcceee
Confidence            4679887420  0125799999999999999999999854321 468999999999999 999 544

>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*

Probab=98.22  E-value=3.9e-06  Score=71.18  Aligned_cols=61  Identities=15%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         64 KNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        64 ~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      .....|+|..   ++..+||+|||+++..|..|.+|-....   .+.|++|+|.++.|| ..|+.+.+
T Consensus       377 n~~TyW~a~~---~~~~~~l~idLg~~~~~n~v~IqE~i~~---gqRV~~y~Ve~~~dg-g~W~~va~  437 (478)
T 3ues_A          377 NRDTFWRPDA---DDAAPAITLTLPQPTTINAIVIEEAIEH---GQRIEHLRVTGALPD-GTERVLGQ  437 (478)
T ss_dssp             CTTCCBCCCT---TCSSCEEEEEEEEEEEEEEEEEEECGGG---CCCEEEEEEEEECTT-SCEEEEEE
T ss_pred             CCCceEeCCC---CCCCeeEEEECCCCcEEEEEEEeecccC---CCceEEEEEEEEeCC-CCEEEEEe
Confidence            3468999985   5678999999999999999999976543   368999999999998 89999875

>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*

Probab=98.03  E-value=1.4e-05  Score=57.38  Aligned_cols=62  Identities=13%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             CCcCCCCc--cCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC-CCCcCcEEe
Q psy17120         66 GGAWCPKH--MVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR-PGFTKWRRW  129 (137)
Q Consensus        66 ~~aW~~~~--~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~-dg~~~W~~y  129 (137)
                      ...|.+..  ....+..+||+|||+.++.|..|.+..+.+... ...++.|+|..+. || ..|...
T Consensus        38 ~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~~-~~r~~~~~I~vs~~dg-~~w~~~  102 (153)
T 3lei_A           38 DSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV-ANRLSNFDVVLLNEAK-QEVARQ  102 (153)
T ss_dssp             CCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTC-GGGSCSEEEEEECTTC-CEEEEE
T ss_pred             CCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCcc-cccceeEEEEEECCCC-Cccccc
Confidence            46687621  002467899999999999999999987653111 3577899999885 67 899874

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=97.88  E-value=5.4e-05  Score=64.22  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=47.2

Q ss_pred             CCcCCCCccCC--CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEE-ee
Q psy17120         66 GGAWCPKHMVG--NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRR-WK  130 (137)
Q Consensus        66 ~~aW~~~~~~~--~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~-y~  130 (137)
                      ...|.......  ....+||+|||++++.|.+|.++.+....  ..+++.|+|.+|.|| .+|+. +.
T Consensus       489 ~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~i~~S~Dg-~~w~~~v~  553 (601)
T 1w8o_A          489 STFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSA--NEQVADYEIYTSLNG-TTWDGPVA  553 (601)
T ss_dssp             TCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEEECSSCS--TTCBCEEEEEEESSS-SSCEEEEE
T ss_pred             CCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEecCCCCC--CCceEEEEEEEECCC-Cccceeee
Confidence            35676653100  12379999999999999999999875421  468999999999999 99995 64

>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}

Probab=97.69  E-value=5.5e-06  Score=77.09  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             CcCCCCccCCCCCC-ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC-CCCcCcEEeec
Q psy17120         67 GAWCPKHMVGNDGH-EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR-PGFTKWRRWKG  131 (137)
Q Consensus        67 ~aW~~~~~~~~~~~-~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~-dg~~~W~~y~~  131 (137)
                      .+|++..   .... +||||||++++.|++|.+|+|.+.+....||++|+|.+|. || ..|+.+.+
T Consensus      1260 SaWs~ss---~~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~dDG-~nWttVa~ 1322 (1376)
T 2zxq_A         1260 TSWSENA---VGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADG-TTKDVVTD 1322 (1376)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ecccccC---CCCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECCCC-CeEEEEEe
Confidence            4666542   2333 9999999999999999999986410115799999999999 89 99998764

>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*

Probab=97.62  E-value=0.00015  Score=52.37  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEE-ECCCCcCcEEe
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDF-WRPGFTKWRRW  129 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~y-S~dg~~~W~~y  129 (137)
                      .+..+|++|||+..+.|..|.+.-|.+-.. ...++.|.|.. +.|| ..|...
T Consensus        51 ~~~~~W~~VDLg~~~~v~~V~i~nr~d~~~-~~r~~~~~I~v~s~dg-~~w~~~  102 (153)
T 4gwi_A           51 FEDNAWWQVDLGKTENVGKVKLYNRGDGNV-ANRLSNFDVVLLNEAK-QEVARQ  102 (153)
T ss_dssp             SBTTCEEEEEEEEEEEEEEEEEEECCSTTC-GGGSCSEEEEEECTTS-CEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEEEEEcccCCch-hhcccceEEEEECCCC-Ceeeee
Confidence            467899999999999999999987653210 25688999965 5688 899864

>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.00069  Score=49.93  Aligned_cols=64  Identities=9%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             CCcCCC--CccCCCCCCceEEeecCeeEEEEEEEeecccCCC--CCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120         66 GGAWCP--KHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG--LGQEYAEEIVVDFWRPGFTKWRRWKGR  132 (137)
Q Consensus        66 ~~aW~~--~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~--~~~~wVtsy~v~yS~dg~~~W~~y~~~  132 (137)
                      ...|..  ..  .....+||+|||+++..|++|....|....  .....++.|.|..|.|+ ..|+.+.+.
T Consensus        50 ~T~Wht~w~~--~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~Dg-~~W~~v~~~  117 (172)
T 3hnm_A           50 GTQWLCRWDV--KEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASIDN-ENWVKLKDW  117 (172)
T ss_dssp             TSCEECCCSS--CCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESSS-SCEEEEECC
T ss_pred             CCeEEecCCC--CCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeCC-CCeEEeEEE
Confidence            466765  21  134679999999999999999999886531  01357999999999999 999988654

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=97.38  E-value=0.00034  Score=54.83  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             CCcCCCC----ccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC----CcCcEEe
Q psy17120         66 GGAWCPK----HMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG----FTKWRRW  129 (137)
Q Consensus        66 ~~aW~~~----~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg----~~~W~~y  129 (137)
                      ...|.+.    .  ..+..+||+|||+..+.|.+|.++-+ +. . ..+++.|+|..|.+.    ..+|...
T Consensus       180 ~t~W~~~~c~~t--~~~~~~W~~VDLg~~~~v~~V~i~~~-d~-~-~~~~~~~~i~vs~s~~~~~~~n~~~~  246 (293)
T 3cqo_A          180 ANNWEMASCTHT--KNTMDPWWRMDLSQTHRVFSVKVTNR-DS-F-EKRINGAEIRIGDSLDNNGNHNPRCA  246 (293)
T ss_dssp             CCSGGGTCCCCC--CSEESCEEEEEEEEEEEEEEEEEECC-SS-S-GGGGTTEEEEEESCCGGGGTTSCEEE
T ss_pred             CCccccCccccC--CCCCCCEEEEECCCeEEEeEEEEEcc-Cc-c-ccccCCeEEEEeccCccccccCceee
Confidence            4567652    2  13458999999999999999999988 42 1 468899999997543    1577653

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=97.33  E-value=0.0012  Score=47.88  Aligned_cols=52  Identities=8%  Similarity=0.216  Sum_probs=44.2

Q ss_pred             CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCc--CcEEe
Q psy17120         65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFT--KWRRW  129 (137)
Q Consensus        65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~--~W~~y  129 (137)
                      ....|+..    ....+||.|||++++.|.+|.+|-.        -++.|.|..+.|+ .  .|..+
T Consensus        45 ~~T~W~t~----g~~Pq~i~Idf~k~~~is~~~i~~~--------~vk~~~ie~s~d~-~p~~w~~i   98 (153)
T 1tvg_A           45 PETFWTTT----GMFPQEFIICFHKHVRIERLVIQSY--------FVQTLKIEKSTSK-EPVDFEQW   98 (153)
T ss_dssp             TTCCEECC----SCSSEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSS-SSCCCEEE
T ss_pred             CCceEECC----CCCCcEEEEECCCceEEEEEEEEec--------CCEEEEEEEECCC-CCcceEEe
Confidence            45899986    3458999999999999999999943        2899999999998 7  99886

>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15

Probab=97.05  E-value=0.0011  Score=47.62  Aligned_cols=44  Identities=14%  Similarity=0.125  Sum_probs=34.4

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG  122 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg  122 (137)
                      .+..+|++|||+..+.|..|.+.-+.+-.  ...+..|.|..+.+.
T Consensus        55 ~~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~i~v~~s~   98 (158)
T 1k12_A           55 GQANPWWRVDLLQVYTITSVTITNRGDCC--GERISGAEINIGQHL   98 (158)
T ss_dssp             SCSSCEEEEEEEEEEEEEEEEEEECSSSC--TTTTTTCEEEEESSC
T ss_pred             CCCCCEEEEECCCceEEeEEEEEeCCCcC--ccccCCEEEEEEcCC
Confidence            46789999999999999999998654321  245678888888765

>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*

Probab=97.01  E-value=0.0024  Score=45.73  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG  122 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg  122 (137)
                      .+..+|++|||+..+.|..|.+.-+.+-.  .+.+..|.|..+.++
T Consensus        57 ~~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~v~~~~  100 (151)
T 2j1v_A           57 ADNPSWWEVDLKKMDKVGLVKIYNRTDAE--TQRLSNFDVILYDNN  100 (151)
T ss_dssp             SCTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSCSEEEEEECTT
T ss_pred             CCCCCEEEEECCCCeEcCEEEEEcCCCcc--ccccCCEEEEEECCC
Confidence            46789999999999999999998654321  367789999999887

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=96.99  E-value=0.0016  Score=50.93  Aligned_cols=43  Identities=16%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECC
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP  121 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~d  121 (137)
                      .+..+|+||||+.++.|.+|.++.+.+..  .+.+..|.|..+.+
T Consensus        47 ~~~~~W~~VDLg~~~~v~~V~i~~r~d~~--~~~~~~~~i~v~~s   89 (293)
T 3cqo_A           47 EQTNPWWRVDLLEPYIVTSITITNRGDCC--PERLNGVEIHIGNS   89 (293)
T ss_dssp             SBSSCEEEEEEEEEEEEEEEEEECCSSSC--GGGGTTEEEEEESC
T ss_pred             CCCCCEEEEECCCceEEEEEEEEeCCCCc--cccccCeEEEEecC
Confidence            35689999999999999999999875421  24566677766554

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=96.89  E-value=0.0045  Score=43.71  Aligned_cols=54  Identities=7%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC-CcCcEEee
Q psy17120         65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG-FTKWRRWK  130 (137)
Q Consensus        65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg-~~~W~~y~  130 (137)
                      ....|+..    ....+||.|||+++..|++|.+|-.        -++.|.|.-+.|+ -..|..+.
T Consensus        37 ~~T~W~s~----g~~pq~i~I~~~~~~~is~~~i~~~--------~~k~~~ie~s~~~~p~~w~~i~   91 (139)
T 2yc2_A           37 DNTFWVTT----GMFPQEFVLRLESCIRVSKITTLSL--------NVRKLAVEKCDQDKPDQFEKVF   91 (139)
T ss_dssp             TTCCEECC----SSSCEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSSSCCCCEEEE
T ss_pred             CCCEEeCC----CCCCeEEEEECCCceEEEEEEEEec--------CCcEEEEEEecCCCCCceEEEE
Confidence            46899986    3447999999999999999999942        2899999999886 14898873

>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}

Probab=96.68  E-value=0.0052  Score=43.91  Aligned_cols=49  Identities=8%  Similarity=0.134  Sum_probs=36.7

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEE--CCCCcCcEE
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW--RPGFTKWRR  128 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS--~dg~~~W~~  128 (137)
                      .+..+|+||||+..+.|..|.+.-+.+-.  .+....|.|..+  .|+ ..|..
T Consensus        54 ~~~~~Ww~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~vg~s~d~-~~~~~  104 (148)
T 2j22_A           54 EDSPSWWEIDLAQTEELEKLIIYNRTDAE--IQRLSNFDIIIYDSNDY-EVFTQ  104 (148)
T ss_dssp             SCTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSEEEEEEEECTTSC-EEEEE
T ss_pred             CCCCCEEEEECCCCEEeeEEEEEecCCCc--ccccCCEEEEEEeCCCC-Ccccc
Confidence            46789999999999999999997654321  256788888874  455 66753

>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*

Probab=96.32  E-value=0.0017  Score=57.56  Aligned_cols=57  Identities=9%  Similarity=0.056  Sum_probs=19.4

Q ss_pred             CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEe
Q psy17120         67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRW  129 (137)
Q Consensus        67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y  129 (137)
                      .-|+.........++|++|||++++.|.+|.+.-+.+... . |   |+|+||.|| .+|+.+
T Consensus       615 T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~~~~~~~~-~-~---~~ve~S~DG-k~W~~v  671 (716)
T 2cho_A          615 LISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDAPC-T-W---GRLEISTDA-KEWKTV  671 (716)
T ss_dssp             EECC------------CEEEEEEEEEEEEEEECC-----------------------------
T ss_pred             eEEECCCCccCCCCCEEEEEcCCcEEEEEEEEecCCCCCC-c-e---EEEEEECCC-CCccCC
Confidence            5687764111156899999999999999997764433221 2 3   999999999 999887

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A

Probab=94.50  E-value=0.0065  Score=55.12  Aligned_cols=63  Identities=11%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCC----cceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120         67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLG----QEYAEEIVVDFWRPGFTKWRRWKGRNGK  135 (137)
Q Consensus        67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~----~~wVtsy~v~yS~dg~~~W~~y~~~~g~  135 (137)
                      ..||...     ...||+|||+.++.|.+..+.-....+..    ..-.+.|+|+||.|+ ..|+....-.|+
T Consensus       835 tKWcs~~-----~~~wl~vDLg~~~tI~~~vv~hagaggE~~~~~~~NT~dF~Lq~s~d~-~~W~~vd~VtgN  901 (937)
T 3gdb_A          835 DKWSSAQ-----LSGSVDIRLTKSRTVVRWVMDHAGAGGESVNDGLMNTKDFDLYYKDAD-GEWKLAKEVRGN  901 (937)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CccccCC-----CCceEEEECCCcEEEeEEEEEecccCccccccccccccceEEEEecCC-CCeEEeeEeeCC
Confidence            5899762     46899999999999999988732111110    123578999999998 999998766665

>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*

Probab=93.26  E-value=0.22  Score=35.94  Aligned_cols=68  Identities=4%  Similarity=-0.081  Sum_probs=45.5

Q ss_pred             eeecCCCCCCcCCCCccCCCCCCceEEeecCeeE--EEEEEEeecccCCCCCcceEeEEEEEEEC--CCCcCcEEeecCC
Q psy17120         58 SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLH--IVTGVQLQGRFGNGLGQEYAEEIVVDFWR--PGFTKWRRWKGRN  133 (137)
Q Consensus        58 aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~--~ItgI~tQG~~~~~~~~~wVtsy~v~yS~--dg~~~W~~y~~~~  133 (137)
                      .+|-.......|....    ....||+|||++..  .|.+|.-..|.+.   ..-+..++++.|+  |+ ..|..+-...
T Consensus        26 ~~~~DGn~~T~f~~~~----~~~~~i~iDLG~~~~~~l~~f~Y~Pr~~~---~~~miGg~fegSnd~Df-~~~~tL~~I~   97 (155)
T 2yfu_A           26 HKAFDGDLNTFFDGPT----ANGCWLGLDFGEGVRNVITQIKFCPRSGY---EQRMIGGIFQGANKEDF-SDAVTLFTIT   97 (155)
T ss_dssp             GGGGSSCTTCCBCCSS----SSSCEEEEECCTTCCEEEEEEEEECCTTC---GGGGTTCEEEEESSTTC-TTCEEEEECC
T ss_pred             hheecCCCCcEeEcCC----CCCceEEEECCCCcceEEeeEEEecCccc---ccCCcEEEEEEECCCCC-CCeEEEEEec
Confidence            3444333445664321    23689999999976  8999988887653   2344578888888  55 8898765433

>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}

Probab=88.11  E-value=0.92  Score=37.93  Aligned_cols=48  Identities=19%  Similarity=0.238  Sum_probs=41.0

Q ss_pred             CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ...+|++||+++..|..|.+|-....+   +-|++|.|.+-.+|  .|+.+.+
T Consensus       354 ~~~~~~i~l~~~~~fn~v~l~E~I~~G---QRV~~f~ve~~~~g--~W~~v~~  401 (443)
T 3gza_A          354 QKKSLTLKLGKEQSVNYCIIQENIKNG---ERIRQYQIEAKVNG--KWQTVCK  401 (443)
T ss_dssp             SSSEEEEEEEEEEEEEEEEEEECGGGC---CCEEEEEEEEEETT--EEEEEEE
T ss_pred             CCceEEEEcCCCceEeEEEEEecCCCC---CcccEEEEEEEeCC--eEEEEEe
Confidence            468999999999999999999876542   67999999999876  8998864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=84.42  E-value=4.3  Score=33.87  Aligned_cols=54  Identities=11%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120         67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP-GFTKWRRWK  130 (137)
Q Consensus        67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~  130 (137)
                      .-|....   ....--|++||++...|+-|++|-....      -.+..|+=|.| | .+|.+|+
T Consensus        93 ~wwqs~~---~~~~v~itl~l~~~~~~~~v~~~f~s~r------P~~~~ieks~d~g-~tw~p~q  147 (525)
T 4aqs_A           93 IWWQSEN---GVENVTIQLDLEAEFHFTHLIMTFKTFR------PAAMLIERSSDFG-KAWGVYR  147 (525)
T ss_dssp             CCEECCT---TCCCCEEEEEEEEEEEEEEEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred             ccccCCC---CCcCeEEEEcCCCeEEEEEEEEEEECCC------CCeEEEEEecCCC-CCCccee
Confidence            4576653   3446789999999999999999864322      24555666888 7 9999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1czsa_	160	b.18.1.2 (A:) C2 domain of factor V {Human (Homo s	4e-11
d1d7pm_	159	b.18.1.2 (M:) C2 domain of factor VIII {Human (Hom	5e-11
d2qqia2	155	b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Hu	2e-10
d1sddb3	162	b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow	4e-10
d2qqia1	156	b.18.1.2 (A:431-586) C2 domain of factor VIII {Hum	9e-08

>d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 4e-11
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 25/125 (20%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   LG+ENG I +K I+ASS   S   G  +                        +RL 
Sbjct: 2   CSTPLGMENGKIENKQITASSFKKSWW-GDYWEPF--------------------RARLN 40

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
                 AW  K    N+  +++E++L  +  +T +  QG       + Y +   + +   
Sbjct: 41  AQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHYSEQ 96

Query: 122 GFTKW 126
           G    
Sbjct: 97  GVEWK 101

>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 5e-11
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 31/138 (22%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSS--SVGPQFGSSYIFQISCIKRHNLIESLFLIHSR 59
           C   LG+E+  I D  I+ASS   +   +  P                           R
Sbjct: 4   CSMPLGMESKAISDAQITASSYFTNMFATWSPSKA------------------------R 39

Query: 60  LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW 119
           L       AW P+    N+  E+++V+      VTGV  QG   + L   Y +E ++   
Sbjct: 40  LHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLISSS 95

Query: 120 RPGFTKWRRWKGRNGKEV 137
           + G  +W  +      +V
Sbjct: 96  QDG-HQWTLFFQNGKVKV 112

>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: B1 domain of neuropilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-10
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 30/129 (23%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C  ALG+E+G I    I+ASS + ++                               R R
Sbjct: 3   CMEALGMESGEIHSDQITASSQYSTNWS---------------------------AERSR 35

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
            +     W P     +   E+I+V+L  L  VT V  QG       ++Y  +        
Sbjct: 36  LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 92

Query: 122 GFTKWRRWK 130
               W   K
Sbjct: 93  NGEDWITIK 101

>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 162

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.5 bits (125), Expect = 4e-10
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 29/133 (21%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C   +GL  G+I D  I AS         P+                          RL 
Sbjct: 4   CKMPMGLSTGLIADSQIQASEFWGYW--EPKLA------------------------RLN 37

Query: 62  HDKNGGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
           +  +  AW  + +    +   +I+V++    ++TG+Q QG   + L   Y  E  V +  
Sbjct: 38  NGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGA-KHYLKPYYTTEFCVAYSL 96

Query: 121 PGFTKWRRWKGRN 133
                WR +KG +
Sbjct: 97  DR-KNWRIFKGNS 108

>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 9e-08
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 28/125 (22%)

Query: 2   CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
           C G LG+ +G+I D  I++S+  D + +                              +R
Sbjct: 1   CSGMLGMVSGLISDSQITSSNQGDRNWMP---------------------------ENIR 33

Query: 62  HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
              +   W       +  +E+++++L +  IV G+ +QG   +   + +  +  + +   
Sbjct: 34  LVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSNN 92

Query: 122 GFTKW 126
           G    
Sbjct: 93  GSDWK 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1czsa_	160	C2 domain of factor V {Human (Homo sapiens) [TaxId	99.97
d1sddb3	162	C2 domain of factor V {Cow (Bos taurus) [TaxId: 99	99.97
d1d7pm_	159	C2 domain of factor VIII {Human (Homo sapiens) [Ta	99.97
d2qqia2	155	B1 domain of neuropilin-1 {Human (Homo sapiens) [T	99.96
d2qqia1	156	C2 domain of factor VIII {Human (Homo sapiens) [Ta	99.96
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	98.18
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	98.08
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	97.99
d1k12a_	158	Fucose binding lectin {European eel (Anguilla angu	97.81
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	97.78
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	97.34

>d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-32  Score=201.27  Aligned_cols=107  Identities=26%  Similarity=0.489  Sum_probs=90.6

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..|||||+|.|||++|+|||.++ ...++.                    +.|.+||||.....++|||+.   ++..|
T Consensus         2 C~~pLGme~g~I~d~~itASS~~~-~~~~~~--------------------~~p~~aRLn~~~~~~aW~~~~---~~~~~   57 (160)
T d1czsa_           2 CSTPLGMENGKIENKQITASSFKK-SWWGDY--------------------WEPFRARLNAQGRVNAWQAKA---NNNKQ   57 (160)
T ss_dssp             CCEECSTTTSCSCGGGEEESCCCB-CTTSCB--------------------CCGGGCBTTCCSSSCSEECSS---CSTTC
T ss_pred             CCccccccCCccchHhEEEeeECC-CCCCCC--------------------cCcceeEECCCCCCCccCCcc---CCccc
Confidence            999999999999999999999876 332222                    345599999876678999986   78899


Q ss_pred             eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG  134 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g  134 (137)
                      ||||||++++.|++|+|||+.... .+.||++|+|+||.|+ ..|..|.+.++
T Consensus        58 wlqvDlg~~~~Vtgv~tqG~~~~~-~~~~vt~y~l~yS~dg-~~w~~~~~~~~  108 (160)
T d1czsa_          58 WLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHYSEQG-VEWKPYRLKSS  108 (160)
T ss_dssp             CEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECCCTTC
T ss_pred             eEeccCCceEEEEEEEecCcccCC-CceeEEEEEEEEEcCC-CCceEEEecee
Confidence            999999999999999999975432 2579999999999999 99999987644

>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.1e-32  Score=199.38  Aligned_cols=107  Identities=26%  Similarity=0.451  Sum_probs=92.3

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCcc-CCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHM-VGNDG   79 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~-~~~~~   79 (137)
                      +|..|||||+|.|||+||||||.+.  .+.|+                        +||||.....++|||+.. ..++.
T Consensus         3 ~C~~pLGme~g~I~d~~itASS~~~--~~~p~------------------------~aRL~~~~~~~aW~~~~~~~~~d~   56 (162)
T d1sddb3           3 ECKMPMGLSTGLIADSQIQASEFWG--YWEPK------------------------LARLNNGGSYNAWIAEKLSTEFNP   56 (162)
T ss_dssp             TCCEECSTTTSCSCGGGEEESCCST--TCCGG------------------------GCBTTCCSSSCSEECSCCCCSSCC
T ss_pred             CCCcCcCccCCCcChhcEEEeeecC--CCChh------------------------hheecCCCCCCceecccccccCCc
Confidence            6999999999999999999999875  46777                        999998766789999642 22567


Q ss_pred             CceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120         80 HEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGK  135 (137)
Q Consensus        80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~  135 (137)
                      .|||||||++++.|++|+|||+.... ...||++|+|+||.|+ ..|..|++.+++
T Consensus        57 ~qwlqVDlg~~~~Vtgv~tqG~~~~~-~~~~vt~y~l~yS~dg-~~w~~~~~~~~~  110 (162)
T d1sddb3          57 EPWIQVDMQKEVLLTGIQTQGAKHYL-KPYYTTEFCVAYSLDR-KNWRIFKGNSTR  110 (162)
T ss_dssp             CSCEEEEEEEEEEEEEEEEECEESSS-SEEEEEEEEEEEESSS-SSCEECCSSCSS
T ss_pred             cceEEecCCcEEEEEEEEeECccCCC-CceeEEEEEEEEeeCC-CeeEEeccCccc
Confidence            99999999999999999999976532 2689999999999999 999999987664

>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-32  Score=198.75  Aligned_cols=108  Identities=26%  Similarity=0.401  Sum_probs=91.2

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      .|..|||||+|.|||++|+|||.++ ...                     ..|.|.+||||.....+||||+.   ++..
T Consensus         3 ~C~~pLGme~g~I~d~~itASS~~~-~~~---------------------~~~~p~~aRLn~~~~~~aW~p~~---~d~~   57 (159)
T d1d7pm_           3 SCSMPLGMESKAISDAQITASSYFT-NMF---------------------ATWSPSKARLHLQGRSNAWRPQV---NNPK   57 (159)
T ss_dssp             SCCEECSTTTSCSCGGGEEESCCEE-ETT---------------------EEECGGGCBTTCCSTTCSBCCSS---CCTT
T ss_pred             CCCccccccCCCcCcccEEEeeECC-CCC---------------------CCcChhheEeCCCCCCCcccCCc---CCcc
Confidence            5999999999999999999999875 221                     12455599999876778999996   7889


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGK  135 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~  135 (137)
                      |||||||++++.|++|+|||+.... ..+||++|+|+||.|| ..|+.|++..+.
T Consensus        58 ~wlqvDl~~~~~vtgi~tqG~~~~~-~~~~v~~y~l~yS~dg-~~w~~y~~~~~~  110 (159)
T d1d7pm_          58 EWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISSSQDG-HQWTLFFQNGKV  110 (159)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECEETTEE
T ss_pred             eeEEccCCcceEEEEEEecccCCCC-cceeEEEEEEEEecCC-CeEEEEecCCce
Confidence            9999999999999999999975432 2589999999999999 999999975543

>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: B1 domain of neuropilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-30  Score=187.88  Aligned_cols=102  Identities=31%  Similarity=0.477  Sum_probs=89.5

Q ss_pred             CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120          1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH   80 (137)
Q Consensus         1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~   80 (137)
                      +|..|||||+|.|||++|+|||.++ ..++|+                        +||||..  .++|||+.   ++..
T Consensus         2 ~C~~pLGme~g~I~d~~itASS~~~-~~~~~~------------------------~aRLn~~--~~~W~~~~---~~~~   51 (155)
T d2qqia2           2 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR   51 (155)
T ss_dssp             SSCEECSTTTSCSCGGGEEESCCSC-GGGCGG------------------------GGBTTCS--SCCBCCSS---CCTT
T ss_pred             CCCCcccccCCccccccEEEeccCC-CCCChh------------------------heeecCC--CccEecCC---CCcc
Confidence            6999999999999999999999886 567777                        9999864  47999996   7889


Q ss_pred             ceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120         81 EYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN  133 (137)
Q Consensus        81 ~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~  133 (137)
                      |||||||++++.|++|+|||+...+. ...||++|+|.||.|| ..|..|++.+
T Consensus        52 ~wlqvDlg~~~~itgi~~qg~~~~~~~~~~~v~~y~~~ys~dg-~~w~~~~~~~  104 (155)
T d2qqia2          52 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEGN  104 (155)
T ss_dssp             CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred             eEEEecCCceeEeeeeeeccccCCcCCceeeeEEEEEEeccCC-CceEEEeecc
Confidence            99999999999999999999865421 2469999999999999 9999999764

>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-30  Score=187.67  Aligned_cols=105  Identities=22%  Similarity=0.458  Sum_probs=89.4

Q ss_pred             CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120          2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE   81 (137)
Q Consensus         2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~   81 (137)
                      |..|||||+|.|||+||+|||.++ ..+.|+                        +|||+..  ..+||+.....++..|
T Consensus         1 C~~~LGm~~g~I~D~~itASS~~~-~~~~p~------------------------~aRL~~~--~~~w~~~~a~~~~~~~   53 (156)
T d2qqia1           1 CSGMLGMVSGLISDSQITSSNQGD-RNWMPE------------------------NIRLVTS--RSGWALPPAPHSYINE   53 (156)
T ss_dssp             TCEECSTTTSCSCGGGEEETTTTS-TTCCGG------------------------GGBTTCC--CCSCSBCCCTTCCSCC
T ss_pred             CCCccccccCccChhhEEEcccCC-CCCCHh------------------------HeeeccC--CCcccccccccCCCcc
Confidence            999999999999999999999886 567777                        9999875  3567744322478899


Q ss_pred             eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120         82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGK  135 (137)
Q Consensus        82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~  135 (137)
                      ||||||++++.|++|+|||+..... ..||++|+|+||.|| ..|+.|.+.++.
T Consensus        54 wlqvDlg~~~~I~gv~~qG~~~~~~-~~~v~~y~l~yS~dg-~~W~~~~~~~~~  105 (156)
T d2qqia1          54 WLQIDLGEEKIVRGIIIQGGKHREN-KVFMRKFKIGYSNNG-SDWKMIMDDSKR  105 (156)
T ss_dssp             CEEEEEEEEEEEEEEEEEECCCTTC-CCCCCCEEEEEESSS-SSCEECBCTTSS
T ss_pred             eEEecCCcEEEEEEEEEEecCCCCC-ceEEEEEEEEEeeCC-CeeEEEEEcccc
Confidence            9999999999999999999865432 579999999999999 999999987653

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=98.18  E-value=3.4e-06  Score=57.00  Aligned_cols=51  Identities=20%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK  130 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~  130 (137)
                      ....+||+|||++++.|..|.++.+....  ..+++.|.|.+|.|+ ..|....
T Consensus        43 ~~~~~wi~idl~~~~~v~~i~i~~~~~~~--~~~~~~~~i~~S~dg-~~w~~~~   93 (142)
T d1w8oa2          43 PGYPHRISLDLGGTHTISGLQYTRRQNSA--NEQVADYEIYTSLNG-TTWDGPV   93 (142)
T ss_dssp             CCSCEEEEEEEEEEEEEEEEEEEECSSCS--TTCBCEEEEEEESSS-SSCEEEE
T ss_pred             CCccEEEEEECCCeEEeeEEEEECccccC--cCCceeEEEEEecCC-CceEEEE
Confidence            45678999999999999999999875432  468999999999999 9997753

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.5e-06  Score=55.32  Aligned_cols=55  Identities=11%  Similarity=0.135  Sum_probs=43.8

Q ss_pred             CCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         66 GGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        66 ~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ...|++..    ...+||+|||+.++.|..|.++.+.      .....|.+.-|.|| .+|.++.+
T Consensus        33 ~T~W~s~~----~~p~~i~idl~~~~~i~~i~i~~~~------~~~~~~~i~~s~Dg-~~w~~v~~   87 (136)
T d1tvga_          33 ETFWTTTG----MFPQEFIICFHKHVRIERLVIQSYF------VQTLKIEKSTSKEP-VDFEQWIE   87 (136)
T ss_dssp             TCCEECCS----CSSEEEEEEEEEEEEEEEEEEEEES------EEEEEEEEECSSSS-CCCEEEEE
T ss_pred             CceeecCC----CCcEEEEEECCCeEEEeeEEEEecc------cceeEEEEEEccCC-ceeEEEEE
Confidence            57898863    4578999999999999999998642      33457777788899 99998754

>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Fucose binding lectin
domain: Fucose binding lectin
species: European eel (Anguilla anguilla) [TaxId: 7936]

Probab=97.81  E-value=2.1e-05  Score=54.25  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcE
Q psy17120         77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWR  127 (137)
Q Consensus        77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~  127 (137)
                      .+..+|++|||+..+.|..|.++-+.+..  ..+...|.|..+.++ ..|.
T Consensus        55 ~~~~~W~~VDLg~~~~i~~v~i~~r~d~~--~~~~~~~~i~vs~d~-~~~~  102 (158)
T d1k12a_          55 GQANPWWRVDLLQVYTITSVTITNRGDCC--GERISGAEINIGQHL-ASNG  102 (158)
T ss_dssp             SCSSCEEEEEEEEEEEEEEEEEEECSSSC--TTTTTTCEEEEESSC-TTTT
T ss_pred             CCCCcEEEEEcCCceEeeEEEEEcccccc--cccccceeEEeccCc-cccc
Confidence            45689999999999999999998775532  467788999999998 7774

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=56.32  Aligned_cols=66  Identities=11%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             ecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         60 LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        60 Ln~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      |-.......|+..    ....+||+|||++++.|.+|.+.=....+. ...++.|.|..|.|+ ..|..+..
T Consensus        44 l~Dgd~~T~W~S~----~~~ph~I~idl~~~~~i~~i~i~~~~~~d~-s~~p~~~~i~~s~d~-~~w~~v~~  109 (161)
T d1jhja_          44 LRDDNLETYWQSD----GSQPHLVNIQFRRKTTVKTLCIYADYKSDE-SYTPSKISVRVGNNF-HNLQEIRQ  109 (161)
T ss_dssp             HHSSCTTCCEECC----SSSSEEEEEEEEEEEEECEEEEEEEHHHHG-GGSEEEEEEEEESST-TSCEEEEE
T ss_pred             ccCCCCCceeecC----CCCCEEEEEEcCCCeEEEEEEEEecCCCCc-CCCcEEEEEEEcCCc-CCceeEEE
Confidence            3333345789876    345799999999999999998852211111 357899999999999 99999864

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00019  Score=52.31  Aligned_cols=61  Identities=7%  Similarity=-0.073  Sum_probs=46.5

Q ss_pred             CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120         65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG  131 (137)
Q Consensus        65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~  131 (137)
                      ....|....    ...+||+|||++++.|.+|.+.=....+. ..-++.|.|..|.|+ ..|+.++.
T Consensus        80 ~~T~W~S~~----~~ph~i~idl~~~~~i~~i~i~~~~~~d~-sy~p~~~~i~~s~d~-~~w~~v~t  140 (194)
T d1gqpa_          80 YDTFWQSDG----GQPHQLDIMFSKRMDICVMAIFFSMIADE-SYAPSLVKVYAGHSP-SDARFYKM  140 (194)
T ss_dssp             TTCCEECCS----SSSEEEEEEEEEEEEECEEEEEEEHHHHG-GGSEEEEEEEEESST-TTCEEEEE
T ss_pred             CcceeccCC----CCCEEEEEECCCCcEEEEEEEEecccccc-cCCceEEEEEEeCCc-CCceEEEE
Confidence            458898863    45799999999999999998753211110 234799999999999 99998764