Psyllid ID: psy17146
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | 2.2.26 [Sep-21-2011] | |||||||
| Q08180 | 764 | Irregular chiasm C-roughe | yes | N/A | 0.317 | 0.420 | 0.575 | 1e-110 | |
| Q6X936 | 789 | Kin of IRRE-like protein | yes | N/A | 0.418 | 0.536 | 0.306 | 5e-44 | |
| Q80W68 | 789 | Kin of IRRE-like protein | yes | N/A | 0.418 | 0.536 | 0.306 | 7e-44 | |
| Q96J84 | 757 | Kin of IRRE-like protein | yes | N/A | 0.419 | 0.560 | 0.310 | 1e-43 | |
| Q7TSU7 | 700 | Kin of IRRE-like protein | no | N/A | 0.438 | 0.632 | 0.263 | 1e-38 | |
| Q8IZU9 | 778 | Kin of IRRE-like protein | no | N/A | 0.394 | 0.512 | 0.294 | 5e-38 | |
| Q8BR86 | 778 | Kin of IRRE-like protein | no | N/A | 0.394 | 0.512 | 0.294 | 2e-37 | |
| Q9R044 | 1252 | Nephrin OS=Rattus norvegi | no | N/A | 0.656 | 0.530 | 0.238 | 6e-34 | |
| Q9QZS7 | 1256 | Nephrin OS=Mus musculus G | no | N/A | 0.654 | 0.527 | 0.242 | 1e-33 | |
| O60500 | 1241 | Nephrin OS=Homo sapiens G | no | N/A | 0.657 | 0.535 | 0.238 | 1e-33 |
| >sp|Q08180|ICCR_DROME Irregular chiasm C-roughest protein OS=Drosophila melanogaster GN=rst PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/351 (57%), Positives = 250/351 (71%), Gaps = 30/351 (8%)
Query: 13 VLLALSMGSL-----AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFAL 67
+LLA +G + Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF L
Sbjct: 8 LLLATIVGMVRSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGL 67
Query: 68 GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLT 127
G R+LSGF+RYAM+GSDEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LT
Sbjct: 68 GTSRDLSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLT 127
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEAS 186
VLVPP+ P+I QGD +Y TEDR++E+EC+S GKP AEITWIDG G V++ N+ T
Sbjct: 128 VLVPPEAPKITQGDVIYATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPL 187
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS- 245
D RR T KS L LTPKKEHHNT F+CQAQNTADRTY+ A++++ VKYAPKV+V+V+GS
Sbjct: 188 PDQRRFTAKSVLRLTPKKEHHNTNFSCQAQNTADRTYRSAKIRVEVKYAPKVKVNVMGSL 247
Query: 246 ---------------------NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA 284
+R+VE + VRL C+A+ANPS ++YRW+IND+P+
Sbjct: 248 PGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPSDVRYRWFINDEPI-IGGQK 306
Query: 285 TELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 335
TE+ + N+TR HD+IVKCEVQ SV G + E D+ P M+
Sbjct: 307 TEMVIRNVTRKFHDAIVKCEVQNSV-GKSEDSETLDISYAPSFRQRPQSME 356
|
Required for correct axonal pathway formation in the optic lobe and for programmed cell death in the developing retina. Drosophila melanogaster (taxid: 7227) |
| >sp|Q6X936|KIRR1_RAT Kin of IRRE-like protein 1 OS=Rattus norvegicus GN=Kirrel PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 209/460 (45%), Gaps = 37/460 (8%)
Query: 7 VQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA 66
V ++V LAL++ + +F+ EP DQT V G R LPC +++ +G++QWTKD A
Sbjct: 36 VAYLIFVTLALALPGT----QTRFSQEPADQTVVAGHRAVLPCVLLNYSGIVQWTKDGLA 91
Query: 67 LGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATL 126
LG + L + RY ++GS + G Y+LEI L DDA Y+CQ + E A+RSR A L
Sbjct: 92 LGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQAT-----EAALRSRRAKL 146
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
TVL+PP+ RI G + L C + N KP A I W GT + E
Sbjct: 147 TVLIPPEDTRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRD-GTQQEGAVTSTELL 205
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN 246
DG+R T S L++ P FTC++ N A K ++L V + P V +S I
Sbjct: 206 KDGKRETTISQLLIQPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLS-IEPQ 264
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
++EG V C+A ANP + YRW + A + Y TN+ V CEV
Sbjct: 265 TVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESR--YETNVDYSFFTEPVSCEVD 322
Query: 307 VSVIGSN-----------RLVE---------GTDVRLYCKAEANPSHMKYRWYINDQPVP 346
V +N R+V G+DV L C NP + W D +
Sbjct: 323 SKVGSTNVSTVVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPP-LTLTWTKKDSNM- 380
Query: 347 AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA 406
+++ +L L ++T+ + + +G +E L V P + V RG
Sbjct: 381 VLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAV-RGD 439
Query: 407 GVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
G + C + P P+ I W +++ VG T+ T+
Sbjct: 440 GGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTN 479
|
Plays a significant role in the normal development and function of the glomerular permeability. Is a signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Rattus norvegicus (taxid: 10116) |
| >sp|Q80W68|KIRR1_MOUSE Kin of IRRE-like protein 1 OS=Mus musculus GN=Kirrel PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 209/460 (45%), Gaps = 37/460 (8%)
Query: 7 VQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA 66
V ++V LAL++ + +F+ EP DQT V G R LPC +++ +G++QWTKD A
Sbjct: 36 VAYLIFVTLALALPGT----QTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLA 91
Query: 67 LGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATL 126
LG + L + RY ++GS + G Y+LEI L DDA Y+CQ + E A+RSR A L
Sbjct: 92 LGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQAT-----EAALRSRRAKL 146
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
TVL+PP+ RI G + L C + N KP A I W GT + E
Sbjct: 147 TVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRD-GTQQEGAVTSTELL 205
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN 246
DG+R T S L++ P FTC++ N A K ++L V + P V +S I
Sbjct: 206 KDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLS-IEPQ 264
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
++EG V C+A ANP + YRW + A + Y TN+ V CEV
Sbjct: 265 TVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESR--YETNVDYSFFTEPVSCEVY 322
Query: 307 VSVIGSN-----------RLVE---------GTDVRLYCKAEANPSHMKYRWYINDQPVP 346
V +N R+V G+DV L C NP + W D +
Sbjct: 323 NKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPP-LTLTWTKKDSNM- 380
Query: 347 AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA 406
+++ +L L ++T+ + + +G +E L V P + V RG
Sbjct: 381 VLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAV-RGD 439
Query: 407 GVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
G + C + P P+ I W +++ VG T+ T+
Sbjct: 440 GGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTN 479
|
Plays a significant role in the normal development and function of the glomerular permeability. Is a signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Mus musculus (taxid: 10090) |
| >sp|Q96J84|KIRR1_HUMAN Kin of IRRE-like protein 1 OS=Homo sapiens GN=KIRREL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 142/458 (31%), Positives = 209/458 (45%), Gaps = 34/458 (7%)
Query: 9 SALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALG 68
S L +L LS + +Q + +F+ EP DQT V G R LPC +++ +G++QWTKD ALG
Sbjct: 3 SLLVWILTLS-DTFSQGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALG 61
Query: 69 PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ L + RY ++GS + G Y+LEI L DDA Y+CQ + E A+RSR A LTV
Sbjct: 62 MGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQAT-----EAALRSRRAKLTV 116
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
L+PP+ RI G + L C + N KP A I W GT + E D
Sbjct: 117 LIPPEDTRIDGGPVILLQAGTPHNLTCRAFNAKPAATIIWFRD-GTQQEGAVASTELLKD 175
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL 248
G+R T S L++ P FTC++ N A + K ++L V + P V +S I +
Sbjct: 176 GKRETTVSQLLINPTDLDIGRVFTCRSMNEAIPSGKETSIELDVHHPPTVTLS-IEPQTV 234
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVS 308
EG V C+A ANP + YRW + A + Y TN+ V CEV
Sbjct: 235 QEGERVVFTCQATANPEILGYRWAKGGFLIEDAHESR--YETNVDYSFFTEPVSCEVHNK 292
Query: 309 VIGSN-----------RLVE---------GTDVRLYCKAEANPSHMKYRWYINDQPVPAA 348
V +N R+V G+DV L C NP + W D +
Sbjct: 293 VGSTNVSTLVNVHFAPRIVVDPKPTTTDIGSDVTLTCVWVGNPP-LTLTWTKKDSNM-VL 350
Query: 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 408
+++ +L L ++T+ + + +G +E L V P + V RG G
Sbjct: 351 SNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQYAV-RGDGG 409
Query: 409 NLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
+ C + P P+ I W +++ VG T+ T+
Sbjct: 410 KVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTN 447
|
Plays a significant role in the normal development and function of the glomerular permeability. Signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Homo sapiens (taxid: 9606) |
| >sp|Q7TSU7|KIRR2_MOUSE Kin of IRRE-like protein 2 OS=Mus musculus GN=Kirrel2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 211/524 (40%), Gaps = 81/524 (15%)
Query: 7 VQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA 66
+ SAL V L G F +P+D ++G LPC + G++QWTKD A
Sbjct: 2 LASALLVFLCCFKGHAGS--SPHFLQQPEDMVVLLGEEARLPCALGAYRGLVQWTKDGLA 59
Query: 67 LGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATL 126
LG R+L G+ RY + G+ G + L I PV L+D+A Y+CQ S + +RSR A L
Sbjct: 60 LGGERDLPGWSRYWISGNSASGQHDLHIKPVELEDEASYECQAS-----QAGLRSRPAQL 114
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECIS-ANGKPPAEITWIDGTGTVMSNVRVTEEA 185
V+VPP+ P+++ G ++ L C S + +P E+ W G + +
Sbjct: 115 HVMVPPEAPQVLGGPSVSLVAGVPGNLTCRSRGDSRPAPELLWFR-DGIRLDGSSFHQTT 173
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
D TV++TL LTP T C+A++ A T + + L ++Y P V +S
Sbjct: 174 LKDKATGTVENTLFLTPSSHDDGATLICRARSQALPTGRDTAVTLSLQYPPMVTLSA-EP 232
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 305
+ EG V C+A A P YRW PV A + + T V CEV
Sbjct: 233 QTVQEGEKVTFLCQATAQPPVTGYRWAKGGSPVLGARGPRLEVVADATFLTEP--VSCEV 290
Query: 306 QVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365
+V +NR ++A E+ I + +
Sbjct: 291 SNAVGSANR----------------------------------STALEVLYGPILQAKPK 316
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 425
S V DVGK D ++ +R P P ITW
Sbjct: 317 S-----VSVDVGK-------DASFSCVWRGNPL---------------------PRITWT 343
Query: 426 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEVGAEATVYLKGRPTIISHRT 483
+V+ + P L L + + AG Y C+A G A+A + + P + + +
Sbjct: 344 RMGGSQVLSSGPTLRLPSVALEDAGDYVCRAEPRRTGLGGGKAQARLTVNAPPVVTALQP 403
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH 527
AR++C F+ P P+ V WS+ + GS + V
Sbjct: 404 APAFLRGPARLQCVVFASPAPDSVVWSWDEGFLEAGSLGRFLVE 447
|
Mus musculus (taxid: 10090) |
| >sp|Q8IZU9|KIRR3_HUMAN Kin of IRRE-like protein 3 OS=Homo sapiens GN=KIRREL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 194/434 (44%), Gaps = 35/434 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F+ +PQDQ V G VTL C + + G + W KD ALG R+LS + +Y ++G+ G+
Sbjct: 50 FSQQPQDQVVVSGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGE 109
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ L+I L DDA Y+CQ + AIRSR A LTVLVPPD P I+ G +
Sbjct: 110 HHLKILRAELQDDAVYECQAI-----QAAIRSRPARLTVLVPPDDPVILGGPVISLRAGD 164
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ L C + N KP A I W+ G V++ ++ DG+R ++ STL ++P +
Sbjct: 165 PLNLTCHADNAKPAASIIWLR-KGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQ 223
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 269
+ C+A N A K + + +++ P V +SV ++E V +C A+ANP+ +Y
Sbjct: 224 SIVCRATNKAIPGGKETSVTIDIQHPPLVNLSV-EPQPVLEDNVVTFHCSAKANPAVTQY 282
Query: 270 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVE------------ 317
RW Q + A+ E+Y T + V CEV + +GS L
Sbjct: 283 RWAKRGQIIKEASG--EVYRTTVDYTYFSEPVSCEV-TNALGSTNLSRTVDVYFGPRMTT 339
Query: 318 ---------GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 368
G+D C NPS + W V + T L L ++ + V
Sbjct: 340 EPQSLLVDLGSDAIFSCAWTGNPS-LTIVWMKRGSGVVLSNEKT-LTLKSVRQEDAGKYV 397
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHE 427
V VG E TL V GP + + G + C + P P+ I W +
Sbjct: 398 CRAVVPRVGAGEREVTLTVN-GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK 456
Query: 428 DSDKVVGNSPNLTL 441
++ G S T+
Sbjct: 457 ENVLESGTSGRYTV 470
|
Could be involved in the hematopoietic supportive capacity of stroma cells. Homo sapiens (taxid: 9606) |
| >sp|Q8BR86|KIRR3_MOUSE Kin of IRRE-like protein 3 OS=Mus musculus GN=Kirrel3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 193/434 (44%), Gaps = 35/434 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F+ +PQDQ V G VTL C + + G + W KD ALG R+LS + +Y ++G+ G+
Sbjct: 50 FSQQPQDQVVVSGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGE 109
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ L+I L DDA Y+CQ + AIRSR A LTVLVPPD P I+ G +
Sbjct: 110 HHLKILRAELQDDAVYECQAI-----QAAIRSRPARLTVLVPPDDPIILGGPVISLRAGD 164
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ L C + N KP A I W+ G V++ ++ DG+R ++ STL ++P +
Sbjct: 165 PLNLTCHADNAKPAASIIWLR-KGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQ 223
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 269
+ C+A N A K + + +++ P V +SV ++E V +C A+ANP+ +Y
Sbjct: 224 SIVCRATNKAIPGGKETSVTIDIQHPPLVNLSV-EPQPVLEDNIVTFHCSAKANPAVTQY 282
Query: 270 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVE------------ 317
RW + A+ ELY T + V CEV + +GS L
Sbjct: 283 RWAKRGHIIKEASG--ELYRTTVDYTYFSEPVSCEV-TNALGSTNLSRTVDVYFGPRMTS 339
Query: 318 ---------GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 368
G+D C NPS + W V + T L L ++ + V
Sbjct: 340 EPQSLLVDLGSDAVFSCAWIGNPS-LTIVWMKRGSGVVLSNEKT-LTLKSVRQEDAGKYV 397
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHE 427
V VG E TL V GP + + G + C + P P+ I W +
Sbjct: 398 CRAVVPRVGAGEREVTLTVN-GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK 456
Query: 428 DSDKVVGNSPNLTL 441
++ G S T+
Sbjct: 457 ENVLESGTSGRYTV 470
|
Could be involved in the hematopoietic supportive capacity of stroma cells. The secreted extracellular domain is directly responsible for supporting hematopoietic stem cells. Mus musculus (taxid: 10090) |
| >sp|Q9R044|NPHN_RAT Nephrin OS=Rattus norvegicus GN=Nphs1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 192/806 (23%), Positives = 311/806 (38%), Gaps = 142/806 (17%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F ++ TAV G+ V L C V V+QW KD LGP+ + GF RY++ G +G+
Sbjct: 48 FWALSENLTAVEGTTVKLWCGVRAPGSVVQWAKDGLLLGPNPKMPGFPRYSLEGDRAKGE 107
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV--QGDTLYTTE 147
+ L I L DDA Y+CQV LG P + S L++LV P + G T+
Sbjct: 108 FHLLIEACDLSDDAEYECQVGRSELG-PELVSPKVILSILVSPKVLLLTPEAGSTVTWVA 166
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+E + C+S + KP +IT+I T++ E S + T V+ P+ +
Sbjct: 167 GQEYVVTCVSGDAKPAPDITFIQSGRTILDVSSNVNEGSEEKLCITEAEARVI-PQSSDN 225
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPK---VQVSVIGSNRLVEGTDVRLYCKAEANP 264
C+ N A T A + + + P + + + G ++ L C A
Sbjct: 226 GQLLVCEGSNPALDTPIKASFTMNILFPPGPPVIDWPGLNEGHVRAGENLELPCTARGGN 285
Query: 265 SHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDSIVKCE------------- 304
+W N +PV A A A + + + H + + C+
Sbjct: 286 PPATLQWLKNGKPVSTAWGTEHAQAVAHSVLVMTVRPEDHGARLSCQSYNSVSAGTQERS 345
Query: 305 ---------VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN-------DQPVPAA 348
++++GS E +V L C +++ + RW++ D+ V
Sbjct: 346 ITLQVTFPPSAITILGSVSQSENKNVTLCCLTKSSRPRVLLRWWLGGRQLLPTDETVMDG 405
Query: 349 ASATELYLTNIT----RHQHDSIVKCEVHNDVGKSE---DSETLDVTYGPR---FRARPY 398
+ ++N+T R + + CE +D E S TL+V Y + P
Sbjct: 406 LHGGHISMSNLTFLVRREDNGLPLTCEAFSDAFSKETFKKSLTLNVKYPAQKLWIEGPPE 465
Query: 399 SVQVDRGAGVNLLC-DVDGNPAPEITWIHEDSDKV-------------VGN--------S 436
+ G V L+C + GNP P + W +DS V +G+ S
Sbjct: 466 GQYIRTGTRVRLVCLAIGGNPDPSLIWF-KDSRPVSEPRQPQEPRRVQLGSVEKSGSTFS 524
Query: 437 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---TIISHRTQFGIPGDTAR 493
L L++ D ++ CKA ++ A + ++ P TI+++ + PGD
Sbjct: 525 RELVLIIGPPDNRAKFSCKAG-----QLSASTQLVVQFPPTNLTILANSSALR-PGDALN 578
Query: 494 VECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDDYSVHNDVGKSE-------- 534
+ C + S PP ++W GE + GS+ SV V +
Sbjct: 579 LTCVSISSNPPVNLSWDKEGERLEDVAAKPQSAPFKGSAASRSVFLRVSSRDHGQRVTCR 638
Query: 535 -DSETL----------DVTYGPRFRARPY-SVQVDRGAGVNLLCDVDGNPAPE-ITWIHE 581
SE L +V Y P F +V V V L V NPAPE W
Sbjct: 639 AHSEALRETVSSFYRFNVLYPPEFLGEQVRAVTVVEQGQVLLPVSVSANPAPEAFNWTFR 698
Query: 582 D----------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR-- 629
+ G + L + +DD + +C+ S E AEA + L
Sbjct: 699 GYRLSPAGGPRHRILSGGALQLWNVTRADDGFYQLHCQNS-----EGTAEALLKLDVHYA 753
Query: 630 PTIISHR--TQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
PTI + R T+ + G + + C+ + P PE +W GEE + DD + +
Sbjct: 754 PTIRALRDPTEVNV-GGSVDIVCTVDANPILPEMFSWERLGEEEEDLNLDDM----EKVS 808
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSN 712
+G L IR+++ G Y C V N
Sbjct: 809 KGSTGRLRIRQAKLSQAGAYQCIVDN 834
|
Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion. Rattus norvegicus (taxid: 10116) |
| >sp|Q9QZS7|NPHN_MOUSE Nephrin OS=Mus musculus GN=Nphs1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 196/808 (24%), Positives = 317/808 (39%), Gaps = 146/808 (18%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F ++ T V GS V L C V V+QW KD LGP+ + GF RY++ G +G+
Sbjct: 48 FWALSENLTVVEGSTVKLWCGVRAPGSVVQWAKDGLLLGPNPKIPGFPRYSLEGDSAKGE 107
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV--QGDTLYTTE 147
+ L I L DDA Y+CQV LG P + S L++LV P ++ G T+
Sbjct: 108 FHLLIEACDLSDDAEYECQVGRSELG-PELVSPSVILSILVSPKVLQLTPEAGSTVTWVA 166
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+E + C+S + KP +I +I G TV E S + T V TP+ +
Sbjct: 167 GQEYVVTCVSGDAKPAPDIIFIQGGRTVEDVSSSVNEGSEEKLFFTEAEARV-TPQSSDN 225
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPK---VQVSVIGSNRLVEGTDVRLYCKAEANP 264
C+ N A T A + + + P + + + G ++ L C A
Sbjct: 226 GQLLVCEGSNPALATPIKASFTMNILFPPGPPVIDWPGLNEGHVRAGENLELPCIARGGN 285
Query: 265 SHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVKC--------EVQ--- 306
+W N +PV A A A + + + H + + C E Q
Sbjct: 286 PPATLQWLKNGKPVSIAWGTEHAQAVAHSVLVMTVRPEDHGARLSCQSYNSVSAETQERS 345
Query: 307 -----------VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN-------DQPVPAA 348
V+++GS E +V L C +++ + RW++ D+ V
Sbjct: 346 ITLQVTFPPSAVTILGSTSQSENKNVTLCCLTKSSRPRVLLRWWLGGRQLLPTDETVMDG 405
Query: 349 ASATELYLTNIT----RHQHDSIVKCEVHNDVGKSE---DSETLDVTYGPR---FRARPY 398
+ ++N+T R + + CE +D E S TL+V Y + P
Sbjct: 406 LHGGHISMSNLTLLVKREDNGLSLTCEAFSDAFSKETFKKSLTLNVKYPAQKLWIEGPPE 465
Query: 399 SVQVDRGAGVNLLC-DVDGNPAPEITWIHEDSDKV-------------VGN--------S 436
+ G V L+C + GNP P +TW+ +DS V +G+ S
Sbjct: 466 GQSIRTGTRVRLVCLAIGGNPEPSLTWL-KDSRPVNDPRQSQEPRRVQLGSVEKSGSTFS 524
Query: 437 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---TIISHRTQFGIPGDTAR 493
L L++ D ++ CKA ++ A + ++ P TI+++ + PGD
Sbjct: 525 RELVLIIGPPDNLAKFSCKAG-----QLSASTQLVVQFPPTNLTILANSSALR-PGDALN 578
Query: 494 VECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDDYSVHNDVGKSEDS------ 536
+ C + S PP ++ GE + GS+ SV V +
Sbjct: 579 LTCVSISSNPPVNLSLDKEGERLDDVAAKPQSAPFKGSAASRSVFLRVSSRDHGHRVTCR 638
Query: 537 -------ET------LDVTYGPRF---RARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWI 579
ET L+V Y P F + R +V V++G + L V NPAPE W
Sbjct: 639 AHSEALRETVSSFYRLNVLYPPEFLGEQVRAVTV-VEQGQAL-LPVSVSANPAPEAFNWT 696
Query: 580 HED----------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629
+ G + L + +DD + +C+ S E AEA + L
Sbjct: 697 FRGYRLSPAGGPRHRILSGGALQLWNVTRADDGFYQLHCQNS-----EGTAEALLKLDVH 751
Query: 630 --PTIISHR--TQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
PTI + + T+ + G + + C+ + P PE +W GE+ + DD +
Sbjct: 752 YAPTIRALKDPTEVNV-GGSVDIVCTVDANPILPEMFSWERLGEDEEELNLDDM----EK 806
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSN 712
+ +G L IR+++ G Y C V N
Sbjct: 807 MSKGSTGRLRIRQAKLSQAGAYQCIVDN 834
|
Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion. Mus musculus (taxid: 10090) |
| >sp|O60500|NPHN_HUMAN Nephrin OS=Homo sapiens GN=NPHS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 192/805 (23%), Positives = 306/805 (38%), Gaps = 140/805 (17%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F P++ T V G+ V L C V +QW KD LGP + GF RY + G G+
Sbjct: 34 FWALPENLTVVEGASVELRCGVSTPGSAVQWAKDGLLLGPDPRIPGFPRYRLEGDPARGE 93
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV--QGDTLYTTE 147
+ L I L DDA Y+CQV +G P + S L++LVPP + G +
Sbjct: 94 FHLHIEACDLSDDAEYECQVGRSEMG-PELVSPRVILSILVPPKLLLLTPEAGTMVTWVA 152
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+E + C+S + KP +IT I +G +S++ + TV++T +TP+ +
Sbjct: 153 GQEYVVNCVSGDAKPAPDIT-ILLSGQTISDISANVNEGSQQKLFTVEATARVTPRSSDN 211
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPK---VQVSVIGSNRLVEGTDVRLYCKAEANP 264
C+A + A A + V + P ++ + + G + L C A
Sbjct: 212 RQLLVCEASSPALEAPIKASFTVNVLFPPGPPVIEWPGLDEGHVRAGQSLELPCVARGGN 271
Query: 265 SHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDSIVKCEVQVSV-------- 309
+W N QPV A A A + + + H + + CE SV
Sbjct: 272 PLATLQWLKNGQPVSTAWGTEHTQAVARSVLVMTVRPEDHGAQLSCEAHNSVSAGTQEHG 331
Query: 310 --------------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN-------DQPVPAA 348
+GS E +V L C ++++ + RW++ ++ V
Sbjct: 332 ITLQVTFPPSAIIILGSASQTENKNVTLSCVSKSSRPRVLLRWWLGWRQLLPMEETVMDG 391
Query: 349 ASATELYLTNIT----RHQHDSIVKCEVHNDVGKSE---DSETLDVTYGPR---FRARPY 398
+ ++N+T R + + CE ++ E S L+V Y + P
Sbjct: 392 LHGGHISMSNLTFLARREDNGLTLTCEAFSEAFTKETFKKSLILNVKYPAQKLWIEGPPE 451
Query: 399 SVQVDRGAGVNLLC-DVDGNPAPEITW------------------IHEDSDKVVGN--SP 437
++ G V L+C + GNP P + W +H S + G+ S
Sbjct: 452 GQKLRAGTRVRLVCLAIGGNPEPSLMWYKDSRTVTESRLPQESRRVHLGSVEKSGSTFSR 511
Query: 438 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---TIISHRTQFGIPGDTARV 494
L L+ D ++ CKA ++ A + ++ P TI+++ + PGD +
Sbjct: 512 ELVLVTGPSDNQAKFTCKAG-----QLSASTQLAVQFPPTNVTILANASALR-PGDALNL 565
Query: 495 ECSAFSIPPPEKVTWSYRGEEI-GV----------GSSDDYSV-----HNDVGK------ 532
C + S PP ++W GE + GV GS+ SV D G+
Sbjct: 566 TCVSVSSNPPVNLSWDKEGERLEGVAAPPRRAPFKGSAAARSVLLQVSSRDHGQRVTCRA 625
Query: 533 --SEDSET------LDVTYGPRFRARPYSVQVDRGAGVNLL-CDVDGNPAPE-ITWIHED 582
+E ET L+V Y P F V G LL V NPAPE W
Sbjct: 626 HSAELRETVSSFYRLNVLYRPEFLGEQVLVVTAVEQGEALLPVSVSANPAPEAFNWTFRG 685
Query: 583 SDKVVGNSPNLTLLMT----------SDDLAGRYYCKASVMGFPEVGAEATVYLKGR--P 630
P +L + +DD + +C+ S E AEA + L P
Sbjct: 686 YRLSPAGGPRHRILSSGALHLWNVTRADDGLYQLHCQNS-----EGTAEARLRLDVHYAP 740
Query: 631 TI--ISHRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
TI + T+ + G + + C+ + P P W GE+ S DD + +
Sbjct: 741 TIRALQDPTEVNV-GGSVDIVCTVDANPILPGMFNWERLGEDEEDQSLDDM----EKISR 795
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSN 712
G L I ++ G Y C V N
Sbjct: 796 GPTGRLRIHHAKLAQAGAYQCIVDN 820
|
Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | ||||||
| 195040544 | 771 | GH12264 [Drosophila grimshawi] gi|193900 | 0.465 | 0.610 | 0.541 | 1e-155 | |
| 194766586 | 778 | GF22469 [Drosophila ananassae] gi|190619 | 0.459 | 0.597 | 0.550 | 1e-155 | |
| 198468273 | 763 | GA27134 [Drosophila pseudoobscura pseudo | 0.445 | 0.589 | 0.544 | 1e-150 | |
| 195134518 | 774 | GI10959 [Drosophila mojavensis] gi|19390 | 0.523 | 0.683 | 0.488 | 1e-149 | |
| 4455392 | 975 | EG:163A10.1 [Drosophila melanogaster] | 0.428 | 0.444 | 0.524 | 1e-141 | |
| 194887652 | 766 | GG18598 [Drosophila erecta] gi|190648422 | 0.464 | 0.613 | 0.489 | 1e-134 | |
| 157131569 | 854 | nephrin [Aedes aegypti] gi|108881808|gb| | 0.446 | 0.528 | 0.488 | 1e-132 | |
| 195477420 | 763 | GE16910 [Drosophila yakuba] gi|194187722 | 0.453 | 0.600 | 0.502 | 1e-132 | |
| 198468285 | 1024 | GA17590 [Drosophila pseudoobscura pseudo | 0.425 | 0.419 | 0.479 | 1e-127 | |
| 195040579 | 988 | GH12487 [Drosophila grimshawi] gi|193900 | 0.420 | 0.430 | 0.492 | 1e-127 |
| >gi|195040544|ref|XP_001991089.1| GH12264 [Drosophila grimshawi] gi|193900847|gb|EDV99713.1| GH12264 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 284/524 (54%), Positives = 355/524 (67%), Gaps = 53/524 (10%)
Query: 7 VQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA 66
V A+W +L Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF
Sbjct: 5 VVEAVWATPSL----YTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFG 60
Query: 67 LGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATL 126
LG R+LSGF+RYAM+GS+EEGDYSL+IYPVMLDDDARYQCQVS G +PAIRS FA L
Sbjct: 61 LGTSRDLSGFERYAMVGSNEEGDYSLDIYPVMLDDDARYQCQVSPGPDAQPAIRSTFAGL 120
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEA 185
TVLVPP+ P+I QGD +Y TEDR++E+EC+S GKP AEITWIDG G V++ N+ T
Sbjct: 121 TVLVPPEAPKITQGDVIYATEDRKVEIECVSIGGKPAAEITWIDGLGNVLTDNIEYTVIP 180
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
D RR T KS L LTPKKEHHNT FTCQAQNTADRTY+ A++++ VKYAPKV+V+VIG
Sbjct: 181 LPDLRRYTAKSLLRLTPKKEHHNTNFTCQAQNTADRTYRSAKIRVEVKYAPKVKVNVIG- 239
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 305
P + SA T+ + ++
Sbjct: 240 ---------------------------------PGSGSAIGSPSTSTSVSGSVAV----- 261
Query: 306 QVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365
R+VE VRL C+A+ANPS ++YRWYIND+P+ TE+ + N+TR HD
Sbjct: 262 -------QRIVEHAQVRLECRADANPSDVRYRWYINDEPI-IGGQKTEMVIRNVTRKFHD 313
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 425
+IVKCEV N VGKSEDSETLD++Y P F+ RP S++ D G+ V+L C+VD NP PEI WI
Sbjct: 314 AIVKCEVQNSVGKSEDSETLDISYAPSFKQRPQSMEADVGSIVSLNCEVDSNPQPEIVWI 373
Query: 426 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQF 485
SD+VVG S NLT + S++ AGRYYCKA+V G+ E+ A+A VYLKG P+I S R+Q
Sbjct: 374 QHPSDRVVGTSTNLTFSV-SNETAGRYYCKANVPGYAEISADAYVYLKGSPSISSLRSQC 432
Query: 486 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G+ GDTAR+EC A S+P V+W++ G+EI S DYS+ D
Sbjct: 433 GLVGDTARIECFASSVPRARHVSWTFNGQEISSESGHDYSILVD 476
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194766586|ref|XP_001965405.1| GF22469 [Drosophila ananassae] gi|190619396|gb|EDV34920.1| GF22469 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/510 (55%), Positives = 356/510 (69%), Gaps = 45/510 (8%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y+ Q+FAM+PQDQTAVVG+RVTLPCRVI+K G LQWTKDDF LG R+LSGF+RYAM+GS
Sbjct: 22 YQNQRFAMQPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSRDLSGFERYAMVGS 81
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEGDYSL+IYPVMLDDDARYQCQVS G G+P IRS FA LTVLVPP+ P+I QGD +Y
Sbjct: 82 DEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPPIRSTFAGLTVLVPPESPKITQGDVIY 141
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPK 203
TEDR++E+EC+S GKP AEITWIDG G V++ N+ T D RR T KS L LTPK
Sbjct: 142 ATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDLRRYTAKSVLRLTPK 201
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG---SNRLVEGTDVRLYCKA 260
KEHHNT FTCQAQNTADRTY+ A++++ VKYAPKV+V+VIG V G+ ++ +
Sbjct: 202 KEHHNTNFTCQAQNTADRTYRSAKIRVEVKYAPKVKVNVIGLHPGGAPVSGSGLQATTTS 261
Query: 261 EANP-SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGT 319
++ SH PAA + +R+VE +
Sbjct: 262 TSSSGSH------------PAATGTSH--------------------------SRIVEHS 283
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS 379
VRL C+A+ANP ++YRW+IND+P+ TE+ + N+TR+ HD+IVKCEV N VGKS
Sbjct: 284 QVRLECRADANPGDVRYRWFINDEPI-NGGQKTEMVIRNVTRNFHDAIVKCEVQNSVGKS 342
Query: 380 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNL 439
EDSETLD++Y P FR RP S++ D G+ V+L C+VD NP EI WI SD+VVG S NL
Sbjct: 343 EDSETLDISYAPSFRQRPQSLEADVGSVVSLNCEVDSNPQAEIVWIQHPSDRVVGTSTNL 402
Query: 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAF 499
T + S++ AGRYYCKA+V G+ E+ A+A VYLKG P+I S R+Q+G+ GDTAR+EC A
Sbjct: 403 TFSV-SNETAGRYYCKANVAGYAEISADAYVYLKGSPSISSPRSQYGLVGDTARIECFAS 461
Query: 500 SIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
S+P V+W++ G+EI S DYS+ D
Sbjct: 462 SVPRARHVSWTFNGQEISSESGHDYSILVD 491
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198468273|ref|XP_002133983.1| GA27134 [Drosophila pseudoobscura pseudoobscura] gi|198146335|gb|EDY72610.1| GA27134 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 277/509 (54%), Positives = 341/509 (66%), Gaps = 59/509 (11%)
Query: 22 LAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAM 81
Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF LG R+LSGF+RYAM
Sbjct: 23 FTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSRDLSGFERYAM 82
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
+GSDEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LTVLVPP+ P+I QGD
Sbjct: 83 VGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGD 142
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVL 200
+Y TEDR++E+ECIS GKP AEITWIDG G V++ N+ T D RR T KS L L
Sbjct: 143 VIYATEDRKVEIECISVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDLRRYTAKSVLRL 202
Query: 201 TPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260
TPKKEHHNT FTCQAQNTADRTY+ A K++V +V+ K
Sbjct: 203 TPKKEHHNTNFTCQAQNTADRTYRSA----------KIRV------------EVKYAPKV 240
Query: 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTD 320
+ N + P ++ T HQ R+VE
Sbjct: 241 KVN--------VLGGGPTGGSSMGT---------HQ-----------------RIVEHAQ 266
Query: 321 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSE 380
VRL C+A+ANPS ++YRWYIND+P+ TE+ + N+TR HD+IVKCEV N VGKSE
Sbjct: 267 VRLECRADANPSDVRYRWYINDEPI-IGGQKTEMIIRNVTRKFHDAIVKCEVQNSVGKSE 325
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
DSETLD++Y P FR RP S++ D G+ V+L C+VD NP P+I WI SD+VVG S NLT
Sbjct: 326 DSETLDISYAPSFRQRPQSLEADIGSVVSLSCEVDSNPQPDIVWIQHPSDRVVGTSTNLT 385
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500
+ S++ AGRYYCK +V G+ E+ A+A VYLKG P+I S RTQ+G+ GDTAR+EC A S
Sbjct: 386 FSV-SNETAGRYYCKVNVPGYAEISADAYVYLKGSPSIGSQRTQYGLVGDTARIECFASS 444
Query: 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
+P V+W++ G+EI S DYS+ D
Sbjct: 445 VPRARHVSWTFNGQEISSESGHDYSILVD 473
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195134518|ref|XP_002011684.1| GI10959 [Drosophila mojavensis] gi|193906807|gb|EDW05674.1| GI10959 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/586 (48%), Positives = 365/586 (62%), Gaps = 57/586 (9%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y+ Q+FAMEPQDQTAVVG+RVTLPCRV++K G LQWTKDDF LG R+LSGF+RY+M+GS
Sbjct: 31 YQNQRFAMEPQDQTAVVGARVTLPCRVVNKQGTLQWTKDDFGLGTSRDLSGFERYSMVGS 90
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LTVLVPP+ P+I QGD +Y
Sbjct: 91 DEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVIY 150
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPK 203
TEDR +E+EC+S GKP AEITWIDG G V++ N+ T D RR T KS L LTPK
Sbjct: 151 ATEDRRVEIECVSIGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDLRRYTAKSLLRLTPK 210
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
KEHHNT FTCQAQNTADRTY+ A K++V V
Sbjct: 211 KEHHNTNFTCQAQNTADRTYRSA----------KIRVEV--------------------- 239
Query: 264 PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRL 323
KY + N+ S + + R+VE VRL
Sbjct: 240 ----KYAPKVK---------------VNVIGSGSGSAINAVAGSAAGAVQRIVEHAQVRL 280
Query: 324 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSE 383
C+A+ANPS ++YRWYIND+P+ TE+ + N+TR HD+IVKCEV N VGKSEDSE
Sbjct: 281 ECRADANPSDVRYRWYINDEPI-IGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSE 339
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLM 443
TLD++Y P F+ RP S++ D G+ V+L C+VD NP PEI WI SD+VVG S NLT +
Sbjct: 340 TLDISYAPSFKQRPQSMEADVGSIVSLNCEVDSNPPPEIVWIQHPSDRVVGTSSNLTFSV 399
Query: 444 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPP 503
S++ AGRYYCKA+V G+ E+ A+A VYLKG P+I S R+Q+G+ GDTAR+EC A S+P
Sbjct: 400 -SNETAGRYYCKANVPGYAEISADAYVYLKGSPSISSPRSQYGLIGDTARIECFASSVPR 458
Query: 504 PEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVN 563
V+W++ G+EI S DYS+ D TL + Y+ V G N
Sbjct: 459 ARHVSWTFNGQEISSESGHDYSILVDAMPGGVKSTLIIRDSQTHHYGKYNCTVVNDYG-N 517
Query: 564 LLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCK 609
+ ++ P ++ + + VVG S L++ + + + CK
Sbjct: 518 DVAEIQLQPKKSVSLL---TTIVVGISSVAALMLLTFIMIIYFKCK 560
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|4455392|emb|CAB36503.1| EG:163A10.1 [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/500 (52%), Positives = 327/500 (65%), Gaps = 67/500 (13%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q FAMEPQDQTAVVGSRVTLPCRV++K G LQWTKDDF LG HRNLSGF+RY+M+GSDEE
Sbjct: 82 QHFAMEPQDQTAVVGSRVTLPCRVMEKVGALQWTKDDFGLGQHRNLSGFERYSMVGSDEE 141
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
GD+SL+IYP+MLDDDA+YQCQV G GE IRSRFA LTVLVPP+ P+I QGD L TTE
Sbjct: 142 GDFSLDIYPLMLDDDAKYQCQVGPGPQGEQGIRSRFAKLTVLVPPEAPKITQGDYLVTTE 201
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPKKEH 206
DREIELEC+S GKP AEITWIDG G V++ + +E D RR T +S L L PKKEH
Sbjct: 202 DREIELECVSQGGKPAAEITWIDGLGNVLTKGIEYVKEPLADSRRITARSILKLAPKKEH 261
Query: 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG----SNRLVEGTDVRLYCKAEA 262
HNTTFTCQAQNTADRTY+ A+L L VKYAPKV VSV+G ++ EG +V L C+A+A
Sbjct: 262 HNTTFTCQAQNTADRTYRSAKLLLEVKYAPKVIVSVVGGALAGGKIPEGAEVILSCQADA 321
Query: 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVR 322
NP + YRW+IND+ + + T++ + N++R HD+IVKCEV V+ +G + + D+
Sbjct: 322 NPHELSYRWFINDELMTGDFT-TKMIIHNVSRQYHDAIVKCEV-VNAVGKSEQSKKLDIS 379
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382
KY I+D +I R
Sbjct: 380 C-----------KYSMAISD---------------DIFRQ-------------------- 393
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 442
RP SV+ D GA V++ CDV GNP PEI WI E+SD+VVG + L L
Sbjct: 394 -------------RPVSVEADLGATVSMRCDVAGNPEPEIEWISENSDQVVGVAAELKLK 440
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502
++S + AGRY+CKA V GFPE+GAEAT+Y+K P I SH+ QFG G +++C AFSIP
Sbjct: 441 VSS-ETAGRYFCKAVVNGFPEIGAEATLYVKRAPIITSHKVQFGGVGGRVKIDCLAFSIP 499
Query: 503 PPEKVTWSYRGEEIGVGSSD 522
E + WS+ G+ I + S+D
Sbjct: 500 KAEHILWSFEGKIINMSSAD 519
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194887652|ref|XP_001976773.1| GG18598 [Drosophila erecta] gi|190648422|gb|EDV45700.1| GG18598 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/517 (48%), Positives = 330/517 (63%), Gaps = 47/517 (9%)
Query: 13 VLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN 72
++ +S Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF LG R+
Sbjct: 13 IVAMVSSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSRD 72
Query: 73 LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
LSGF+RYAM+GSDEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LTVLVPP
Sbjct: 73 LSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPP 132
Query: 133 DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
+ P+I QG+ +Y TEDR++E+EC+S GKP AEITWIDG GTV+++
Sbjct: 133 EAPKITQGEVIYATEDRKVEIECVSVGGKPAAEITWIDGLGTVLTD-------------- 178
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT 252
++ T++ P + FT K +++ PK E
Sbjct: 179 NIEYTVIPLPDQRR----FTA---------------KSVLRLTPKK-----------EHH 208
Query: 253 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGS 312
+ C+A+ N + YR V A + ++ S+ V
Sbjct: 209 NTNFSCQAQ-NTADRTYRSAKIRVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGSAHVSTG 267
Query: 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 372
+R+VE + VRL C+A+ANPS ++YRW+IND+P+ TE+ + N+TR HD+IVKCEV
Sbjct: 268 SRIVEHSQVRLECRADANPSDVRYRWFINDEPI-IGGQKTEMVIRNVTRKFHDAIVKCEV 326
Query: 373 HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV 432
N VGKSEDSETLD++Y P FR RP S++ D G+ V+L C+VD NP PEI WI SD+V
Sbjct: 327 QNSVGKSEDSETLDISYAPSFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRV 386
Query: 433 VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA 492
VG S NLT + S++ AGRYYCKA+V G+ E+ A+A VYLKG P I S RTQ+G+ GDTA
Sbjct: 387 VGTSTNLTFSV-SNETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTA 445
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
R+EC A S+P V+W++ G+EI S DYS+ D
Sbjct: 446 RIECFASSVPRARHVSWTFNGQEISSESGHDYSILVD 482
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157131569|ref|XP_001655884.1| nephrin [Aedes aegypti] gi|108881808|gb|EAT46033.1| AAEL002754-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/528 (48%), Positives = 334/528 (63%), Gaps = 77/528 (14%)
Query: 6 RVQSALWVLLALSMGSLAQYRE---QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK 62
+V + LW++L +S+GS A Q+FAMEPQDQTA+VGS+VTLPCRV K G LQWTK
Sbjct: 9 KVVNYLWLILLISVGSTANVVSSGTQRFAMEPQDQTAIVGSKVTLPCRVESKVGQLQWTK 68
Query: 63 DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSR 122
DDF LG HRNLSGFDRY+MIGSDEEGDYSLEIYPVMLDD+ARYQCQVS G G P +RSR
Sbjct: 69 DDFGLGWHRNLSGFDRYSMIGSDEEGDYSLEIYPVMLDDEARYQCQVSPGKDGTPGMRSR 128
Query: 123 FATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182
FAT+TVLVPP+PP+I+QGD L TTEDREIELEC+S GKP AEITWIDG G
Sbjct: 129 FATITVLVPPEPPKIIQGDFLVTTEDREIELECVSVGGKPAAEITWIDGLGN-------- 180
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV 242
V+T E+ T + TA K ++K PK
Sbjct: 181 ----------------VITSGIEYVKEPLTDTGRYTA---------KSILKLTPKK---- 211
Query: 243 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK 302
E + C+A+ N + YR + +L L +
Sbjct: 212 -------EHHNTSFTCQAQ-NTADRTYR-------------SVKLKL--------EVKYA 242
Query: 303 CEVQVSVIGS----NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 358
+V VSVIG R+ EG ++RL C A+ANP+ + YRW+IND+PV TE+ + N
Sbjct: 243 PKVSVSVIGGALAGGRIPEGAEIRLSCHADANPNDVSYRWFINDEPV-TGDYTTEMIIHN 301
Query: 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP 418
+++ HD++VKCEVHN VGKSE+SE LD++YGP FR+RP SV+ D V L CDVDGNP
Sbjct: 302 VSKKFHDAVVKCEVHNAVGKSEESEILDISYGPTFRSRPKSVEADADRPVTLACDVDGNP 361
Query: 419 APEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
PEI WIHE+S++++ +S N+T++ S + AG YYCKASV GFPE+ A A++YLKG P I
Sbjct: 362 PPEIIWIHEESNRMITSSANITII-ASRETAGNYYCKASVSGFPEIEAMASLYLKGPPRI 420
Query: 479 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526
S R Q+G+ D ++++C A S+P + V W+Y G EI + +DY++
Sbjct: 421 RSQRHQYGVVNDNSQIQCEAISVPKAKHVIWTYNGLEI--NNENDYTI 466
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195477420|ref|XP_002100198.1| GE16910 [Drosophila yakuba] gi|194187722|gb|EDX01306.1| GE16910 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/505 (50%), Positives = 322/505 (63%), Gaps = 47/505 (9%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF LG R+LSGF+RYAM+GS
Sbjct: 25 YQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSRDLSGFERYAMVGS 84
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LTVLVPP+ P+I QGD +Y
Sbjct: 85 DEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVMY 144
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
TEDR++E+EC+S GKP AEITWIDG G VLT
Sbjct: 145 ATEDRKVEIECVSVGGKPAAEITWIDGLGN------------------------VLTDNI 180
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
E+ Q + TA K +++ PK E + C+A+ N
Sbjct: 181 EYTVIPLPDQRRFTA---------KSVLRLTPKK-----------EHHNTNFSCQAQ-NT 219
Query: 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLY 324
+ YR V A + ++ S+ V + +R+VE + VRL
Sbjct: 220 ADRTYRSAKIRVEVKYAPKVKVYVMGSLPAGAGGSVGGAAGSVHMGTGSRIVEHSQVRLE 279
Query: 325 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
C+A+ANPS ++YRW+IND+P+ TE+ + N+TR HD+IVKCEV N VGKSEDSET
Sbjct: 280 CRADANPSDVRYRWFINDEPI-IGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSET 338
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 444
LD++Y P FR RP S++ D G+ V+L C+VD NP PEI WI SD+VVG S NLT +
Sbjct: 339 LDISYAPSFRQRPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTFSV- 397
Query: 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP 504
S++ AGRYYCKA+V G+ E+ A+A VYLKG P I S RTQ+G+ GDTAR+EC A S+P
Sbjct: 398 SNETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTARIECFASSVPRA 457
Query: 505 EKVTWSYRGEEIGVGSSDDYSVHND 529
V+W++ G+EI S DYS+ D
Sbjct: 458 RHVSWTFNGQEISSESGHDYSILVD 482
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198468285|ref|XP_001354661.2| GA17590 [Drosophila pseudoobscura pseudoobscura] gi|198146341|gb|EAL31716.2| GA17590 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/496 (47%), Positives = 314/496 (63%), Gaps = 66/496 (13%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q+FAMEPQDQTAVVGSRVTLPCRV++K G LQWTKDDF LG HRNLSGF+RY+M+GSDEE
Sbjct: 150 QQFAMEPQDQTAVVGSRVTLPCRVMEKVGALQWTKDDFGLGQHRNLSGFERYSMVGSDEE 209
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
GD+SL+IYP+MLDDDA+YQCQV G GE IRSRFA LTVLVPP+ P+I+QGD + TTE
Sbjct: 210 GDFSLDIYPLMLDDDAKYQCQVGPGPQGEQGIRSRFAKLTVLVPPEAPKILQGDYMVTTE 269
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEH 206
DREIELEC+S GKP AEITWIDG G V++ + +E D RR T KS
Sbjct: 270 DREIELECVSVGGKPAAEITWIDGLGNVLTKGIEYVKEPLSDSRRITAKS---------- 319
Query: 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH 266
++K APK E + C+A+ N +
Sbjct: 320 ------------------------ILKLAPKK-----------EHHNTTFTCQAQ-NTAD 343
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326
YR + +L L ++ V V + ++ EG +V L C+
Sbjct: 344 RTYR-------------SAKLLL----EVKYAPKVSVSVVEGALAGGKIPEGAEVVLSCQ 386
Query: 327 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
A+ANP + YRW+IND+ + + T++ + N+TR HDSIVKCEV N VGKSE+SETLD
Sbjct: 387 ADANPPEVTYRWFINDELMTGDFT-TKMIIHNVTRSYHDSIVKCEVVNAVGKSEESETLD 445
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
+++GP FR RP +V+ D GA V++ C+V GNP PEI W++E+S ++VG L + ++S
Sbjct: 446 ISFGPVFRKRPQTVEADLGATVSMRCEVAGNPTPEIEWVNENSAQIVGRGTELKIKVSS- 504
Query: 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506
+ AGRY C+A V GFPE+GAEA V++K P I SH+ QFG G+ ++EC AFSIP E+
Sbjct: 505 ETAGRYICRAEVTGFPEIGAEALVHVKRAPIITSHKVQFGAVGNKVKIECLAFSIPKAEQ 564
Query: 507 VTWSYRGEEIGVGSSD 522
+ WS+ + I + S+D
Sbjct: 565 ILWSFENKVINMSSAD 580
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195040579|ref|XP_001991095.1| GH12487 [Drosophila grimshawi] gi|193900853|gb|EDV99719.1| GH12487 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/500 (49%), Positives = 313/500 (62%), Gaps = 75/500 (15%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q FAMEPQDQTAVVGSRVTLPCRV+ K G LQWTKDDF LG HRNLSGF+RY+M+GSDEE
Sbjct: 76 QHFAMEPQDQTAVVGSRVTLPCRVMQKKGALQWTKDDFGLGQHRNLSGFERYSMVGSDEE 135
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
GD+SL+IYP+MLDDDA+YQCQV G GEP IRSRFA LTVLVPP+ P+I+QGD L TTE
Sbjct: 136 GDFSLDIYPLMLDDDAKYQCQVGPGPQGEPGIRSRFAILTVLVPPESPKILQGDFLVTTE 195
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
DREIELEC+SA GKP AEITW +DG + + P +
Sbjct: 196 DREIELECVSAGGKPAAEITW------------------IDGLGNVLTAESFFEPLSDSR 237
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
TT K ++K APK + + + C+A+ N +
Sbjct: 238 RTT-----------------TKSVLKLAPKKRYH-----------NTTITCQAQ-NTADR 268
Query: 268 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIG-----SNRLVEGTDVR 322
YR SA L +V VSV+G + R+ EG +V
Sbjct: 269 TYR------------SAKVLLEVKYAP---------KVSVSVVGGASTATGRIPEGAEVI 307
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382
L C+A+ANP + YRW+IND+ + + T+L + N+TR HD+IVKCEV N VGKSE+S
Sbjct: 308 LSCQADANPPELNYRWFINDELMQGDFT-TKLIIHNVTRKYHDAIVKCEVGNAVGKSEES 366
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 442
ETLD+++GP FR RP S + D GA V + C+V GNPAP+I WI+E+SD+VVG P L L
Sbjct: 367 ETLDISFGPVFRQRPASKEADIGATVTMRCEVGGNPAPDIEWINENSDQVVGRGPELKLK 426
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502
+ S + AGRY+CKA+V GFPE+GAEATVY+K P I SH+ Q+G G +++C AFSIP
Sbjct: 427 V-STETAGRYFCKATVSGFPEIGAEATVYVKRAPIITSHKVQYGDVGRRTKIDCLAFSIP 485
Query: 503 PPEKVTWSYRGEEIGVGSSD 522
E + WS+ G+ I + S+D
Sbjct: 486 KAELILWSFAGKVINMSSAD 505
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | ||||||
| FB|FBgn0028369 | 975 | kirre "kin of irre" [Drosophil | 0.291 | 0.302 | 0.625 | 3.8e-173 | |
| FB|FBgn0003285 | 764 | rst "roughest" [Drosophila mel | 0.218 | 0.289 | 0.711 | 1.7e-166 | |
| UNIPROTKB|E1BPL4 | 707 | KIRREL2 "Uncharacterized prote | 0.288 | 0.413 | 0.320 | 2.5e-53 | |
| MGI|MGI:2442334 | 700 | Kirrel2 "kin of IRRE like 2 (D | 0.290 | 0.42 | 0.324 | 3.1e-53 | |
| UNIPROTKB|Q6UWL6 | 708 | KIRREL2 "Kin of IRRE-like prot | 0.296 | 0.423 | 0.316 | 5.2e-53 | |
| WB|WBGene00006365 | 730 | syg-1 [Caenorhabditis elegans | 0.160 | 0.221 | 0.410 | 3.9e-51 | |
| UNIPROTKB|K7EJS8 | 673 | KIRREL2 "Kin of IRRE-like prot | 0.296 | 0.445 | 0.316 | 1.4e-49 | |
| UNIPROTKB|F1RLG9 | 711 | KIRREL2 "Uncharacterized prote | 0.272 | 0.386 | 0.320 | 1.8e-49 | |
| UNIPROTKB|F1Q051 | 756 | KIRREL "Uncharacterized protei | 0.416 | 0.556 | 0.313 | 2.3e-42 | |
| UNIPROTKB|Q96J84 | 757 | KIRREL "Kin of IRRE-like prote | 0.416 | 0.556 | 0.309 | 8.4e-42 |
| FB|FBgn0028369 kirre "kin of irre" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 190/304 (62%), Positives = 230/304 (75%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q FAMEPQDQTAVVGSRVTLPCRV++K G LQWTKDDF LG HRNLSGF+RY+M+GSDEE
Sbjct: 82 QHFAMEPQDQTAVVGSRVTLPCRVMEKVGALQWTKDDFGLGQHRNLSGFERYSMVGSDEE 141
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
GD+SL+IYP+MLDDDA+YQCQV G GE IRSRFA LTVLVPP+ P+I QGD L TTE
Sbjct: 142 GDFSLDIYPLMLDDDAKYQCQVGPGPQGEQGIRSRFAKLTVLVPPEAPKITQGDYLVTTE 201
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEH 206
DREIELEC+S GKP AEITWIDG G V++ + +E D RR T +S L L PKKEH
Sbjct: 202 DREIELECVSQGGKPAAEITWIDGLGNVLTKGIEYVKEPLADSRRITARSILKLAPKKEH 261
Query: 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS----NRLVEGTDVRLYCKAEA 262
HNTTFTCQAQNTADRTY+ A+L L VKYAPKV VSV+G ++ EG +V L C+A+A
Sbjct: 262 HNTTFTCQAQNTADRTYRSAKLLLEVKYAPKVIVSVVGGALAGGKIPEGAEVILSCQADA 321
Query: 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVR 322
NP + YRW+IND+ + T++ + N++R HD+IVKCEV V+ +G + + D+
Sbjct: 322 NPHELSYRWFINDE-LMTGDFTTKMIIHNVSRQYHDAIVKCEV-VNAVGKSEQSKKLDIS 379
Query: 323 LYCK 326
CK
Sbjct: 380 --CK 381
|
|
| FB|FBgn0003285 rst "roughest" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.7e-166, Sum P(3) = 1.7e-166
Identities = 158/222 (71%), Positives = 186/222 (83%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y+ Q+FAMEPQDQTAVVG+RVTLPCRVI+K G LQWTKDDF LG R+LSGF+RYAM+GS
Sbjct: 25 YQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKDDFGLGTSRDLSGFERYAMVGS 84
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEGDYSL+IYPVMLDDDARYQCQVS G G+PAIRS FA LTVLVPP+ P+I QGD +Y
Sbjct: 85 DEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVIY 144
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPK 203
TEDR++E+EC+S GKP AEITWIDG G V++ N+ T D RR T KS L LTPK
Sbjct: 145 ATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLTPK 204
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
KEHHNT F+CQAQNTADRTY+ A++++ VKYAPKV+V+V+GS
Sbjct: 205 KEHHNTNFSCQAQNTADRTYRSAKIRVEVKYAPKVKVNVMGS 246
|
|
| UNIPROTKB|E1BPL4 KIRREL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 97/303 (32%), Positives = 143/303 (47%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F +P+DQ ++G LPC + D G++QWTKD ALG R+L G+ RY + G+ G
Sbjct: 26 FLQQPEDQVVLLGDEARLPCALGDYRGLVQWTKDGLALGGERDLPGWSRYWISGNAASGQ 85
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ L I PV L+D A Y+CQ + + +RSR A L VLVPPDPP+++ G ++
Sbjct: 86 HDLHIRPVELEDQASYECQAT-----QAGLRSRPAQLHVLVPPDPPQVLGGPSVSLVAGV 140
Query: 150 EIELECIS-ANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
L C S + P E+ W G + + +G +V+S L LTP
Sbjct: 141 PANLTCRSRGDAHPTPELLWFRD-GIRLDGAIFRQTPLKEGTIGSVESILSLTPSSHDDG 199
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268
T C+A++ A K + L ++Y P V +S + EG V C+A A P
Sbjct: 200 ATLVCRARSQALPAGKDTAVTLSLQYPPVVTLSA-EPQTVQEGEKVTFLCQATAQPPVTG 258
Query: 269 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAE 328
YRW PV A + + + + V CEV +V +NR DV+ +
Sbjct: 259 YRWAKGGSPVLGARGPMLEIVADASFLT--APVSCEVSNAVGSANRST-ALDVQFGPILQ 315
Query: 329 ANP 331
A P
Sbjct: 316 AKP 318
|
|
| MGI|MGI:2442334 Kirrel2 "kin of IRRE like 2 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 3.1e-53, Sum P(2) = 3.1e-53
Identities = 100/308 (32%), Positives = 144/308 (46%)
Query: 9 SALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALG 68
SAL V L G F +P+D ++G LPC + G++QWTKD ALG
Sbjct: 4 SALLVFLCCFKGHAGS--SPHFLQQPEDMVVLLGEEARLPCALGAYRGLVQWTKDGLALG 61
Query: 69 PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
R+L G+ RY + G+ G + L I PV L+D+A Y+CQ S + +RSR A L V
Sbjct: 62 GERDLPGWSRYWISGNSASGQHDLHIKPVELEDEASYECQAS-----QAGLRSRPAQLHV 116
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECIS-ANGKPPAEITWI-DGTGTVMSNVRVTEEAS 186
+VPP+ P+++ G ++ L C S + +P E+ W DG S+ T
Sbjct: 117 MVPPEAPQVLGGPSVSLVAGVPGNLTCRSRGDSRPAPELLWFRDGIRLDGSSFHQT--TL 174
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN 246
D TV++TL LTP T C+A++ A T + + L ++Y P V +S
Sbjct: 175 KDKATGTVENTLFLTPSSHDDGATLICRARSQALPTGRDTAVTLSLQYPPMVTLSA-EPQ 233
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
+ EG V C+A A P YRW PV A + + T V CEV
Sbjct: 234 TVQEGEKVTFLCQATAQPPVTGYRWAKGGSPVLGARGPRLEVVADATFLTEP--VSCEVS 291
Query: 307 VSVIGSNR 314
+V +NR
Sbjct: 292 NAVGSANR 299
|
|
| UNIPROTKB|Q6UWL6 KIRREL2 "Kin of IRRE-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 5.2e-53, Sum P(2) = 5.2e-53
Identities = 99/313 (31%), Positives = 150/313 (47%)
Query: 4 MTRVQ-SALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK 62
M R++ AL VLL G F +P+D ++G LPC + G++QWTK
Sbjct: 1 MLRMRVPALLVLLFCFRGRAGP--SPHFLQQPEDLVVLLGEEARLPCALGAYWGLVQWTK 58
Query: 63 DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSR 122
ALG R+L G+ RY + G+ G + L I PV L+D+A Y+CQ + + +RSR
Sbjct: 59 SGLALGGQRDLPGWSRYWISGNAANGQHDLHIRPVELEDEASYECQAT-----QAGLRSR 113
Query: 123 FATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS-ANGKPPAEITWIDGTGTVMSNVRV 181
A L VLVPP+ P+++ G ++ L C S + +P E+ W G ++
Sbjct: 114 PAQLHVLVPPEAPQVLGGPSVSLVAGVPANLTCRSRGDARPTPELLWFRD-GVLLDGATF 172
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
+ +G +V+STL LTP TF C+A++ A T + + L ++Y P+V +S
Sbjct: 173 HQTLLKEGTPGSVESTLTLTPFSHDDGATFVCRARSQALPTGRDTAITLSLQYPPEVTLS 232
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 301
+ + EG V C+A A P YRW PV A L + + V
Sbjct: 233 A-SPHTVQEGEKVIFLCQATAQPPVTGYRWAKGGSPV-LGARGPRLEVVADASFLTEP-V 289
Query: 302 KCEVQVSVIGSNR 314
CEV +V +NR
Sbjct: 290 SCEVSNAVGSANR 302
|
|
| WB|WBGene00006365 syg-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 69/168 (41%), Positives = 88/168 (52%)
Query: 4 MTRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKD 63
M R Q+ W LL L Q +Q+ P+D A VG L CRV + G +QW KD
Sbjct: 1 MVRWQT--WPLLLLFQLVTCQQLQQRIVEAPKDTLAAVGETAILTCRVEHQQGPVQWMKD 58
Query: 64 DFALGPHRN--LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRS 121
DF LG R+ L G RY M+GS G+Y+LEI V L DD + CQ+S + + S
Sbjct: 59 DFGLGTDRDKPLPGNKRYRMVGSAANGEYNLEISNVTLFDDDDFACQISESDHAKAVVSS 118
Query: 122 RFATLTVLVPPDPPRIVQGD-TLYTTEDREIELECISANGKPPAEITW 168
+ A LTVLV P PP+IV+ +L I C+S GKPP I W
Sbjct: 119 K-AKLTVLVRPTPPKIVKSHHSLKAIAGDPITQSCLSRKGKPPPTIGW 165
|
|
| UNIPROTKB|K7EJS8 KIRREL2 "Kin of IRRE-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 99/313 (31%), Positives = 150/313 (47%)
Query: 4 MTRVQ-SALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK 62
M R++ AL VLL G F +P+D ++G LPC + G++QWTK
Sbjct: 1 MLRMRVPALLVLLFCFRGRAGP--SPHFLQQPEDLVVLLGEEARLPCALGAYWGLVQWTK 58
Query: 63 DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSR 122
ALG R+L G+ RY + G+ G + L I PV L+D+A Y+CQ + + +RSR
Sbjct: 59 SGLALGGQRDLPGWSRYWISGNAANGQHDLHIRPVELEDEASYECQAT-----QAGLRSR 113
Query: 123 FATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS-ANGKPPAEITWIDGTGTVMSNVRV 181
A L VLVPP+ P+++ G ++ L C S + +P E+ W G ++
Sbjct: 114 PAQLHVLVPPEAPQVLGGPSVSLVAGVPANLTCRSRGDARPTPELLWFRD-GVLLDGATF 172
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
+ +G +V+STL LTP TF C+A++ A T + + L ++Y P+V +S
Sbjct: 173 HQTLLKEGTPGSVESTLTLTPFSHDDGATFVCRARSQALPTGRDTAITLSLQYPPEVTLS 232
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 301
+ + EG V C+A A P YRW PV A L + + V
Sbjct: 233 A-SPHTVQEGEKVIFLCQATAQPPVTGYRWAKGGSPV-LGARGPRLEVVADASFLTEP-V 289
Query: 302 KCEVQVSVIGSNR 314
CEV +V +NR
Sbjct: 290 SCEVSNAVGSANR 302
|
|
| UNIPROTKB|F1RLG9 KIRREL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 93/290 (32%), Positives = 136/290 (46%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F +P+D ++G LPC + G++QWTKD ALG R+L G+ RY + G+ G
Sbjct: 27 FLQQPEDLVVLLGDEARLPCALGAYWGLVQWTKDGLALGGERDLPGWSRYWISGNAAGGQ 86
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ L I PV L+D A Y+CQ + + +RSR A L VLVPP+ P+++ G ++
Sbjct: 87 HDLHIRPVELEDQASYECQAT-----QAGLRSRPAQLHVLVPPEAPQVLGGPSVSLVAGI 141
Query: 150 EIELECIS-ANGKPPAEITWI-DGT---GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
L C S + P E+ W DG G + E + G +V+S L LTP
Sbjct: 142 PANLTCRSRGDAHPTPELLWFRDGVQLDGATFHQTLLKEGTT--GSTGSVESILSLTPSS 199
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
T C+A++ A K + L ++Y P V +S R+ EG V C+A A P
Sbjct: 200 HDDGATLVCRARSQALPVGKDTAITLSLQYPPVVTLSA-EPQRVQEGEKVTFLCQATAQP 258
Query: 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR 314
YRW PV A + + + V CEV +V +NR
Sbjct: 259 PVTGYRWAKGGSPVLGARGPMLEVVADASFLTEP--VSCEVSNAVGSANR 306
|
|
| UNIPROTKB|F1Q051 KIRREL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 143/456 (31%), Positives = 209/456 (45%)
Query: 11 LWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH 70
+W+L LS + +Q + +F+ EP DQT V G R LPC +++ +G++QWTKD ALG
Sbjct: 6 VWIL-TLS-DTFSQGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMG 63
Query: 71 RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+ L + RY ++GS + G Y+LEI L DDA Y+CQ + E A+RSR A LTVL+
Sbjct: 64 QGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQAT-----EAALRSRRAKLTVLI 118
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
PP+ RI G L L C + N KP A I W GT + E DG+
Sbjct: 119 PPEDTRIDGGPVLLLQAGTPHNLTCRAFNAKPAATIIWFRD-GTQQEGAVASTELLKDGK 177
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
R T S L++ P FTC++ N A T K ++L V + P V +S I + E
Sbjct: 178 RETTVSQLLINPTDLDIGRVFTCRSVNEAVPTGKETSIELDVHHPPTVTLS-IEPQTVQE 236
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
G V C+A ANP + YRW + A + Y TN+ V CEV V
Sbjct: 237 GERVVFTCQATANPEILGYRWAKGGFVIEDAHESR--YETNVDYSFFTEPVSCEVHNKVG 294
Query: 311 GSN-----------RLVE---------GTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 350
+N R+V G+DV L C NP + W D + ++
Sbjct: 295 STNVSTLVNVHFAPRIVVDPKPTTTDIGSDVTLTCVWVGNPP-LTLTWTKKDSNM-VLSN 352
Query: 351 ATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410
+ +L L ++T+ + + +G +E L V P + V RG G +
Sbjct: 353 SNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQYAV-RGDGGKV 411
Query: 411 LCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
C + P P+ I W +++ VG T+ T+
Sbjct: 412 ECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTN 447
|
|
| UNIPROTKB|Q96J84 KIRREL "Kin of IRRE-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 141/456 (30%), Positives = 209/456 (45%)
Query: 11 LWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH 70
+W+L LS + +Q + +F+ EP DQT V G R LPC +++ +G++QWTKD ALG
Sbjct: 6 VWIL-TLS-DTFSQGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMG 63
Query: 71 RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+ L + RY ++GS + G Y+LEI L DDA Y+CQ + E A+RSR A LTVL+
Sbjct: 64 QGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQAT-----EAALRSRRAKLTVLI 118
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
PP+ RI G + L C + N KP A I W GT + E DG+
Sbjct: 119 PPEDTRIDGGPVILLQAGTPHNLTCRAFNAKPAATIIWFRD-GTQQEGAVASTELLKDGK 177
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
R T S L++ P FTC++ N A + K ++L V + P V +S I + E
Sbjct: 178 RETTVSQLLINPTDLDIGRVFTCRSMNEAIPSGKETSIELDVHHPPTVTLS-IEPQTVQE 236
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
G V C+A ANP + YRW + A + Y TN+ V CEV V
Sbjct: 237 GERVVFTCQATANPEILGYRWAKGGFLIEDAHESR--YETNVDYSFFTEPVSCEVHNKVG 294
Query: 311 GSN-----------RLVE---------GTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 350
+N R+V G+DV L C NP + W D + ++
Sbjct: 295 STNVSTLVNVHFAPRIVVDPKPTTTDIGSDVTLTCVWVGNPP-LTLTWTKKDSNM-VLSN 352
Query: 351 ATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410
+ +L L ++T+ + + +G +E L V P + V RG G +
Sbjct: 353 SNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQYAV-RGDGGKV 411
Query: 411 LCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
C + P P+ I W +++ VG T+ T+
Sbjct: 412 ECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTN 447
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q08180 | ICCR_DROME | No assigned EC number | 0.5754 | 0.3175 | 0.4201 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1011 | |||
| cd05758 | 98 | cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I | 1e-34 | |
| pfam08205 | 89 | pfam08205, C2-set_2, CD80-like C2-set immunoglobul | 2e-17 | |
| cd05758 | 98 | cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I | 1e-15 | |
| cd05898 | 98 | cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-li | 1e-13 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-09 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-09 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 4e-09 | |
| cd05759 | 82 | cd05759, Ig2_KIRREL3-like, Second immunoglobulin ( | 7e-09 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 9e-09 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-08 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-08 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-07 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-07 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 5e-07 | |
| cd05898 | 98 | cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-li | 2e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 2e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 2e-06 | |
| cd07703 | 95 | cd07703, Ig2_Nectin-2_like, Second immunoglobulin | 4e-06 | |
| cd05719 | 95 | cd05719, Ig2_PVR_like, Second immunoglobulin (Ig) | 9e-06 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 1e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-05 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 1e-05 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-05 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-05 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-05 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-05 | |
| cd05877 | 106 | cd05877, Ig_LP_like, Immunoglobulin (Ig)-like doma | 4e-05 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 4e-05 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 4e-05 | |
| cd05761 | 82 | cd05761, Ig2_Necl-1-4_like, Second immunoglobulin | 6e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 9e-05 | |
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 2e-04 | |
| cd05890 | 98 | cd05890, Ig2_Nectin-1_like, Second immunoglobulin | 2e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-04 | |
| cd05714 | 106 | cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like dom | 4e-04 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 5e-04 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 5e-04 | |
| cd05722 | 95 | cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l | 5e-04 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 0.001 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 0.001 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 0.001 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 0.002 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 0.002 |
| >gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-34
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
G P I S TQ+ I GD RVEC FS PPP+++ W+++ E+ GSS Y+V DP
Sbjct: 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPG 60
Query: 688 GIKSTLIIRES-RHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ STL I + D YNC+ N +GS + I L+
Sbjct: 61 GVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISLE 98
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98 |
| >gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-17
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
P I +L E+ E+ C SA GKP ITW DG ++ + T
Sbjct: 1 PTIEPPVSLLEGENLEVVATCSSAGGKPAPRITWYLDGRELEAITTSSEQDP--ESGLYT 58
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224
V STL L P +E H + TCQ A R K
Sbjct: 59 VTSTLKLVPSREDHGRSLTCQVSYGALRGQK 89
|
These domains belong to the immunoglobulin superfamily. Length = 89 |
| >gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-15
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530
G P I S TQ+ I GD RVEC FS PPP+++ W+++ E+ GSS Y+V D
Sbjct: 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP 57
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98 |
| >gnl|CDD|143306 cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 1e-13
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
G P I S + Q+ + G+ +V+C S PPP+++ W+++ + G+S+ Y+V
Sbjct: 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGS 60
Query: 688 GIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ STL I D YNC+ N +GS + I L+
Sbjct: 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE 98
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. Length = 98 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G++ + C A PPPE VTW Y+ + S +SV STL I +
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGST----STLTISNVTPE 61
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G Y C+ +N GS S L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G++ + C A PPPE VTW Y+ + S +SV STL I +
Sbjct: 8 EGESVTLSCEASGSPPPE-VTW-YKQGGKLLAESGRFSVSRSGST----STLTISNVTPE 61
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G Y C+ +N GS S L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G++AR C+ P P V+W G+ + SSD + V + G TL I + D
Sbjct: 15 GESARFTCTVTGDPDPT-VSWFKDGQPLR--SSDRFKVTYE----GGTYTLTISNVQPDD 67
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C +N G L
Sbjct: 68 EGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-09
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
L C + KP AEI W G V+ ++E DG+R T STL +TP TFT
Sbjct: 4 LTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFT 62
Query: 213 CQAQNTA 219
C+A+N A
Sbjct: 63 CRARNEA 69
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 82 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
KF +P+D G C V D + W KD + L DR+ + + E
Sbjct: 2 KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDG------QPLRSSDRFKV--TYEG 53
Query: 88 GDYSLEIYPVMLDDDARYQCQVS 110
G Y+L I V DD+ +Y C +
Sbjct: 54 GTYTLTISNVQPDDEGKYTCVAT 76
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-08
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+F +P V+V G C V G+P P ++W + V L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 444 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
DD G+Y C A+ G AEA+ L
Sbjct: 61 SNVQPDD-EGKYTCVATN----SAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-08
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+F +P V+V G C V G+P P ++W + V L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 598 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
DD G+Y C A+ G AEA+ L
Sbjct: 61 SNVQPDD-EGKYTCVATN----SAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P T G VTL C + W K L L+ R+ S +L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-----LAESGRF--SVSRSGSTSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
I V +D Y C + S TLTV
Sbjct: 54 TISNVTPEDSGTYTCAATNSS----GSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P T G VTL C + W K L L+ R+ S +L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-----LAESGRF--SVSRSGSTSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
I V +D Y C + S TLTV
Sbjct: 54 TISNVTPEDSGTYTCAATNSS----GSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 2e-07
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
+ C A PPP +TW G+ + STL I + G
Sbjct: 1 VTLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGS--STLTISNVTLEDSGT 57
Query: 706 YNCSVSNPYGSDSVEI 721
Y C SN G+ S +
Sbjct: 58 YTCVASNSAGTVSASV 73
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 5e-07
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P I + T + L C + G PP I+W + G +
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGS----------GGLGS 50
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQN 217
STL L+ + T+TC A N
Sbjct: 51 SGSTLTLSSVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143306 cd05898, Ig5_KIRREL3, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526
G P I S + Q+ + G+ +V+C S PPP+++ W+++ + G+S+ Y+V
Sbjct: 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTV 53
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. Length = 98 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS 457
G V L C +GNP P ITW+ + +S++ V + LT+ ++ +D +G Y C A
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLED-SGLYTCVAE 59
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS 611
G V L C +GNP P ITW+ + +S++ V + LT+ ++ +D +G Y C A
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLED-SGLYTCVAE 59
|
Length = 63 |
| >gnl|CDD|143327 cd07703, Ig2_Nectin-2_like, Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213
C+SANG+PPA I+W T+ N T + + DG TV S L P E + TC
Sbjct: 22 CVSANGRPPARISWS---STLGGNANTTSKENGDG-TVTVTSEYSLVPTPEANGKEVTC 76
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Length = 95 |
| >gnl|CDD|143196 cd05719, Ig2_PVR_like, Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213
C+SANGKPPA I+W + T + + E +G TV S L P +E + TC
Sbjct: 22 CVSANGKPPATISW-ETTLGGEAETQSKENP--NG-TVTVTSEYRLVPSREANGKELTC 76
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "canyon", it has a footprint similar to that of the intercellular adhesion molecule-1 receptor on human rhinoviruses. This group also includes the second Ig-like domain of nectin-1 (also known as poliovirus receptor related protein(PVRL)1; CD111). Length = 95 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+P I + G + CSA PPP ++W G G S
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSG-------- 52
Query: 689 IKSTLIIRESRHDHFGVYNCSVSN 712
STL + + G Y C SN
Sbjct: 53 --STLTLSSVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + + C A P P +TW G+ + + + STL I+ +
Sbjct: 1 EGQSVTLTCPAEGNPVPN-ITWLKDGKPL----PESNRFVAS------GSTLTIKSVSLE 49
Query: 702 HFGVYNCSVSNPYG 715
G+Y C N G
Sbjct: 50 DSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+T R++C A IP P +TW G I DP + TLI+ + +
Sbjct: 1 GETGRLDCEAEGIPQPT-ITWRLNGVPIEELP-------PDPRRRVDGGTLILSNVQPND 52
Query: 703 FGVYNCSVSNPYG 715
VY C+ SN +G
Sbjct: 53 TAVYQCNASNVHG 65
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 445
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 446 DDLAGRYYCKAS 457
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 599
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 600 DDLAGRYYCKAS 611
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 445
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 446 DDLAGRYYCKAS 457
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
|
Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLLM---TS 599
P SV V G V L C+ G+P PE+TW + V + TL + T
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 600 DDLAGRYYCKAS 611
+D +G Y C A+
Sbjct: 61 ED-SGTYTCAAT 71
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 2e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+ L C A+G PP ITW+ + S+V ++ STL ++ + T
Sbjct: 1 VTLTC-LASGPPPPTITWLKNGKPLPSSVLTRV--RSSRGTSSGSSTLTISNVTLEDSGT 57
Query: 211 FTCQAQNTADRTYKVAR 227
+TC A N+A
Sbjct: 58 YTCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143285 cd05877, Ig_LP_like, Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 42 GSRVTLPCR------VIDKTGV-LQWTK---DDF-------ALGPH-RNLSGFDRYAMIG 83
G VTLPCR + + ++WTK D A+G ++ + +
Sbjct: 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR 61
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113
+ D SL I + L+D RY+C+V G+
Sbjct: 62 RAHDLDASLVITDLRLEDYGRYRCEVIDGL 91
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 396 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN--LTLLMTSDDLAGRYY 453
P V G V L C GNP P TW + + +S N T ++++D +G Y
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGV--PLSSSQNGFFTPNVSAED-SGTYT 61
Query: 454 CKAS 457
C AS
Sbjct: 62 CVAS 65
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN--LTLLMTSDDLAGRYY 607
P V G V L C GNP P TW + + +S N T ++++D +G Y
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGV--PLSSSQNGFFTPNVSAED-SGTYT 61
Query: 608 CKAS 611
C AS
Sbjct: 62 CVAS 65
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143238 cd05761, Ig2_Necl-1-4_like, Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
E+EL C S+ KP A I W G + E+ + G+ TV S+L +E
Sbjct: 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDEN--GKTFTVTSSLRFQVDREDDGA 58
Query: 210 TFTCQAQNTA 219
C+ + A
Sbjct: 59 PIICRVDHPA 68
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. Length = 82 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 9e-05
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 45 VTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103
VTL C + W K+ L G +L I V L+D
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSS----RGTSSGSSTLTISNVTLEDSG 56
Query: 104 RYQCQVSTG 112
Y C S
Sbjct: 57 TYTCVASNS 65
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 38 TAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGF-------------DRYAMI 82
T G VTLPC + + W K GP + R +
Sbjct: 12 TVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLS 71
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
G+ + D+SL I + L D Y C VS
Sbjct: 72 GNGSKNDFSLTISNLRLSDSGTYTCAVSNP 101
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|143298 cd05890, Ig2_Nectin-1_like, Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 155 CISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT-----TVKSTLVLTPKKEHHNT 209
C+SANGKPP+ + W + R+ EA R TV S L P +E H
Sbjct: 27 CVSANGKPPSVVRW---------DTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQ 77
Query: 210 TFTCQAQNTADR 221
TC DR
Sbjct: 78 KLTCIVNYRNDR 89
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associated with cleft lip/palate ectodermal dysplasia syndrome (CLPED1). Nectin-1 is a major receptor for herpes simplex virus through interaction with the viral envelope glycoprotein D. Length = 98 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 21/105 (20%), Positives = 28/105 (26%), Gaps = 2/105 (1%)
Query: 877 QTLPKLAPSPHLPPSLSNSVIVTDKTPPPSHLTISSNSVDPRYSATYGNPYLRQS--PNL 934
+ + + + PS SS V S S P
Sbjct: 156 EEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA 215
Query: 935 PPPHTGQPPPPPYSSVRNGALPQATRLPSSPTSQFIVPNNTNHST 979
P PPP S N + P P P Q + P +T T
Sbjct: 216 PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT 260
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 42 GSRVTLPCRVIDKTGV-------LQWTK---DDF-------ALGPHRNLSGFDRYAMIG- 83
G VTLPCR + + ++WTK D A+G + G R +
Sbjct: 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY 61
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113
+ GD SL I + L+D RY+C+V GI
Sbjct: 62 PADPGDASLVITDLRLEDSGRYRCEVIDGI 91
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. There is considerable evidence that HA-binding CSPGs are involved in developmental processes in the central nervous system. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 427
T +P S+ V G CDVDG PAP +TW+ E
Sbjct: 1 TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE 40
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 581
T +P S+ V G CDVDG PAP +TW+ E
Sbjct: 1 TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE 40
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV-IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
F EP D AV G V L C + ++W KD G NL +R +
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD----GVLLNLVSDERRQQL-----P 52
Query: 89 DYSLEIYPVM-----LDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ SL I V+ D+ YQC LG +I SR A LTV
Sbjct: 53 NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG--SIVSRTARLTV 95
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 408 VNLLCDVDGNPAPEITWIHED-------------SDKVVGNSPNLTLLMTSDDLAGRYYC 454
V L C G P P ITW+ S S LT+ + + +G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 455 KAS 457
AS
Sbjct: 61 VAS 63
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 562 VNLLCDVDGNPAPEITWIHED-------------SDKVVGNSPNLTLLMTSDDLAGRYYC 608
V L C G P P ITW+ S S LT+ + + +G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 609 KAS 611
AS
Sbjct: 61 VAS 63
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 13/70 (18%)
Query: 42 GSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100
G VTL C + W KD L +L I V L+
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV------------ASGSTLTIKSVSLE 49
Query: 101 DDARYQCQVS 110
D Y C
Sbjct: 50 DSGLYTCVAE 59
|
Length = 63 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS------PNLTL--LMTSDDLAGRYYCKA 456
G L C G+P P I WI D K++ NS N TL L+T+ G + C A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPD-GKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 457 S 457
S
Sbjct: 60 S 60
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS------PNLTL--LMTSDDLAGRYYCKA 610
G L C G+P P I WI D K++ NS N TL L+T+ G + C A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPD-GKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 611 S 611
S
Sbjct: 60 S 60
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1011 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4194|consensus | 873 | 99.96 | ||
| KOG3515|consensus | 741 | 99.96 | ||
| KOG4194|consensus | 873 | 99.96 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.95 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.93 | |
| KOG3515|consensus | 741 | 99.87 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.79 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.78 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.59 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.55 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.52 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.51 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.51 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.5 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.49 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.48 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.47 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.47 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.46 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.45 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.45 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.45 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.44 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.44 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.44 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.44 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.43 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.43 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.41 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.41 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.41 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.4 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.4 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.39 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.39 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.39 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.39 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.39 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.38 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.38 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.37 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.37 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.34 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.33 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.33 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.32 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.31 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.31 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.31 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.3 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.3 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.3 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.3 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.29 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.29 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.29 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.29 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.29 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.29 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.28 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.28 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.28 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.28 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.28 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.28 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.27 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.27 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.26 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.26 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.26 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.25 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.25 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.25 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.24 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.24 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.24 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.24 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.24 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.23 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.23 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.23 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.22 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.22 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.22 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.22 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.22 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.21 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.21 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.21 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.21 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.21 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.2 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.19 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.19 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.18 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.18 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.18 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.18 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.17 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.16 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.15 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.15 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.14 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.14 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.14 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.14 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.14 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.13 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.13 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.13 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.13 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.13 | |
| PHA03376 | 221 | BARF1; Provisional | 99.12 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.12 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.12 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.12 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.12 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.12 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.12 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.11 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.11 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.11 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.1 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.09 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.09 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.09 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.09 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.09 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.09 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.08 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.08 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.08 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.08 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.08 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.08 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.07 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.07 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.06 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.06 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.05 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.04 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.04 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.04 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.04 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.03 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.03 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.02 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.02 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.02 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.01 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.0 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.99 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 98.99 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.99 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 98.99 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 98.98 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 98.98 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 98.97 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.97 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 98.97 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 98.96 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 98.96 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.96 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.95 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.94 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 98.94 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.93 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.91 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.91 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 98.9 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.88 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.88 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 98.88 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 98.87 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.86 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 98.86 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 98.86 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.85 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.84 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.84 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 98.84 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.83 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.83 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.83 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.82 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.8 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.8 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.79 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.77 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.77 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.75 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.75 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.73 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.73 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.73 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.73 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.72 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.71 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.71 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.7 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.7 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.68 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.67 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.66 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.64 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.61 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.61 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.6 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.58 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.58 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.58 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.57 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.56 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.55 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 98.54 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.54 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.54 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.53 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.53 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.5 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.5 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.5 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 98.47 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.47 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.46 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.46 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.45 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.44 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.44 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 98.44 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.44 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 98.43 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.43 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.42 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.42 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.41 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 98.4 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.4 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.4 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.39 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.39 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.37 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.37 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.37 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.37 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.36 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.35 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.35 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.35 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.34 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.34 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.34 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.34 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 98.32 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.32 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.31 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.3 | |
| PHA03376 | 221 | BARF1; Provisional | 98.3 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.29 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.27 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.27 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.26 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 98.25 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.25 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.23 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.22 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.22 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.22 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.21 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.2 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.18 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 98.17 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.16 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.16 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.15 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.14 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.14 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.12 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.11 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.11 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.1 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.09 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.09 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.07 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 98.06 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.04 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.03 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.03 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.02 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.01 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.01 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.0 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 97.98 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.98 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.96 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.94 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.93 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 97.91 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.89 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.88 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.88 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.85 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.85 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.84 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.83 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 97.83 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.82 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.81 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 97.74 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.72 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.7 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.7 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.69 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 97.68 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.67 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.66 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.66 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.65 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.65 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.59 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.58 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.58 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.56 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.53 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.53 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.52 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.52 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.48 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.47 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.47 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.46 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.41 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.4 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.39 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.39 | |
| KOG0613|consensus | 1205 | 97.39 | ||
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.38 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.35 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.34 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.32 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.32 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.32 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.32 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.31 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.3 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.28 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.26 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.26 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.23 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.2 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.19 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.12 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.03 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.92 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.89 | |
| KOG0196|consensus | 996 | 96.82 | ||
| KOG1480|consensus | 909 | 96.78 | ||
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 96.74 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 96.66 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.65 | |
| KOG1480|consensus | 909 | 96.64 | ||
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.57 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.56 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 96.53 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.52 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.44 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 96.38 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 96.35 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.3 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.17 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 95.82 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 95.73 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 95.67 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 95.46 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 95.46 | |
| KOG0613|consensus | 1205 | 95.16 | ||
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 95.08 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 94.92 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 94.85 | |
| PRK14081 | 667 | triple tyrosine motif-containing protein; Provisio | 94.7 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 94.67 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 94.61 | |
| KOG0196|consensus | 996 | 94.4 | ||
| PHA02633 | 63 | hypothetical protein; Provisional | 94.14 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 93.85 | |
| KOG1026|consensus | 774 | 93.57 | ||
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 93.28 | |
| cd05890 | 98 | Ig2_Nectin-1_like Second immunoglobulin (Ig) domai | 93.21 | |
| KOG4258|consensus | 1025 | 93.14 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 92.23 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 92.12 | |
| KOG4597|consensus | 560 | 92.11 | ||
| PRK14081 | 667 | triple tyrosine motif-containing protein; Provisio | 91.74 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 91.69 | |
| KOG3632|consensus | 1335 | 91.66 | ||
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 90.4 | |
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 89.37 | |
| KOG4597|consensus | 560 | 88.77 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 88.09 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 87.58 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 87.39 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 86.34 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 85.23 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 84.94 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 84.72 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 84.3 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 82.8 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 81.95 | |
| KOG4258|consensus | 1025 | 80.18 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=713.22 Aligned_cols=658 Identities=21% Similarity=0.313 Sum_probs=529.3
Q ss_pred cceeecCCceeEE-ecCc--EEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecc-cCCC
Q psy17146 28 QKFAMEPQDQTAV-VGSR--VTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVM-LDDD 102 (1011)
Q Consensus 28 p~~~~~p~~~~v~-~G~~--v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~-~~D~ 102 (1011)
|.|...|.+..+. .-+. ++|.|.+.+ |.+.+.|+|||..+.. ....++.+. ..+|.|.+.. ..|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~----~~~~~~~~~------~G~lvI~~p~~~~d~ 109 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDP----TEYPRVSVL------GGTLVITNPDAALDQ 109 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccc----ccccceeee------cCceEecCCcchhhc
Confidence 8888888765444 3344 999999998 7889999999987643 333455554 2268888888 8899
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.|+|..+ ...|..+.|.....+..+ -...+.+++.+|+.+.|.|..-.+.|.+.+.|..+...-..
T Consensus 110 G~YqC~AsN~~G---ta~S~~~~l~~~~i~~F~-~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~----- 180 (1051)
T KOG3513|consen 110 GIYQCFASNKLG---TAVSREARLQFGFIPKFK-KEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFV----- 180 (1051)
T ss_pred ceeEEEeecccc---eeeccceeecccccccCc-cccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCccc-----
Confidence 999999999754 346777777766544322 12345788999999999998778889999999986544321
Q ss_pred EeeecCCc-eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcc
Q psy17146 183 EEASVDGR-RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 183 ~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
.....| .....+.|.|.++..+|.+.|.|.|.+....... ..+.+.+....... .
T Consensus 181 --~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v---------~~~~~~L~~~~~~~-------------~ 236 (1051)
T KOG3513|consen 181 --QIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIV---------QGPPFPLIVRSNNV-------------M 236 (1051)
T ss_pred --ccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccc---------cCCceeEEEccccc-------------c
Confidence 111111 2233468999999999999999999984333211 11212222110000 0
Q ss_pred cCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEEC
Q psy17146 262 ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341 (1011)
Q Consensus 262 ~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~ 341 (1011)
+.. .-...+.+.+......|+.+.|+|.+.|+|.| +|.|.|.
T Consensus 237 ~~~-------------------------------------~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P-~i~W~k~ 278 (1051)
T KOG3513|consen 237 REY-------------------------------------APKILVPFPETETALKGQSVKLECFALGNPTP-QIKWRKV 278 (1051)
T ss_pred ccc-------------------------------------CCccccCCCCcccccCCCeEEEEEEecCCCCC-cEEEEeC
Confidence 000 00000111234567889999999999999998 9999998
Q ss_pred Ce-ecCC----CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCC
Q psy17146 342 DQ-PVPA----AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 416 (1011)
Q Consensus 342 g~-~l~~----~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g 416 (1011)
+. +++. ......|.|.+++.+ |+|.|+|.|+|..|.......|.|..+|.+...+++..+..|++++|.|.+.|
T Consensus 279 ~g~~~~~r~~~~~~~~vL~I~nv~~~-D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g 357 (1051)
T KOG3513|consen 279 DGKPPPRRATYSNYGKVLKIPNVQYE-DAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASG 357 (1051)
T ss_pred CCCCCCcceeeeccccEEEecccCcC-CCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecC
Confidence 77 4332 256789999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCce--------eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccC
Q psy17146 417 NPAPEITWIHEDSDK--------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP 488 (1011)
Q Consensus 417 ~p~p~v~W~k~~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~ 488 (1011)
.|.|+|+|++|+..+ ..-..+.|+|.+++.+|+|+|+|.|+
T Consensus 358 ~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~------------------------------- 406 (1051)
T KOG3513|consen 358 KPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAE------------------------------- 406 (1051)
T ss_pred CCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeee-------------------------------
Confidence 999999999998543 34457889999999999999999999
Q ss_pred CCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEec-ceeecCCce--EEEcCCCcEEEE
Q psy17146 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG-PRFRARPYS--VQVDRGAGVNLL 565 (1011)
Q Consensus 489 g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~-P~~~~~p~~--~~v~~G~~~~l~ 565 (1011)
|..|..-+++.|.|... |.|...|.. +.+..|..+.|.
T Consensus 407 ---------------------------------------Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 407 ---------------------------------------NKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred ---------------------------------------cccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEe
Confidence 55666777778888754 888877754 478899999999
Q ss_pred EEEecCCCCeEEEEecCC------ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCce
Q psy17146 566 CDVDGNPAPEITWIHEDS------DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQ 638 (1011)
Q Consensus 566 C~~~g~p~p~v~W~k~~~------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~ 638 (1011)
|.+.+.|.|.+.|.|+++ ++.+..+++|.|.+++.+|+|.|+|.|+| ..|.+...++|.|+++++|+. +...
T Consensus 448 C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N-~~G~a~~~~~L~Vkd~tri~~~P~~~ 526 (1051)
T KOG3513|consen 448 CKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAEN-KLGKAESTGNLIVKDATRITLAPSNT 526 (1051)
T ss_pred eccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEc-ccCccceEEEEEEecCceEEeccchh
Confidence 999999999999999875 34566789999999999999999999999 799999999999999999994 5677
Q ss_pred eeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCC-CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 639 FGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSD-DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.+..|+.++|+|++..++.. +.+.|++||..++..... ++.+... ...+.|+|.+++..|+|.|.|+|...+.+
T Consensus 527 ~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~----~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds 602 (1051)
T KOG3513|consen 527 DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDG----SDSGRLTIANVSLEDSGKYTCVAQTALDS 602 (1051)
T ss_pred hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCC----cCccceEEEeeccccCceEEEEEEEeecc
Confidence 79999999999999988773 378999999999874444 4444332 22268999999999999999999998888
Q ss_pred eEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc-cCCCCCCCCcCcc
Q psy17146 717 DSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIK 794 (1011)
Q Consensus 717 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ 794 (1011)
.++.+.|.| + .+| ||.++.+.+++++++.|+| ++.||+|||..|.
T Consensus 603 ~s~~A~l~V--------------------------------~-gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~ 649 (1051)
T KOG3513|consen 603 ASARADLLV--------------------------------R-GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYT 649 (1051)
T ss_pred hhcccceEE--------------------------------e-cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEe
Confidence 888888887 3 455 8889999999999999999 9999999999999
Q ss_pred eeeecCcc------------------------cccccccc---c---CCCCCCC--cccccccccccccccccCCccccc
Q psy17146 795 LEFRTGSS------------------------VSNVHLDY---A---GHDSETG--SESVHTRIGVPLAGPVPMDQRYHR 842 (1011)
Q Consensus 795 ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s--s~~~~t~~~~P~~~P~~~~~~~~~ 842 (1011)
||+|+... .||++|+| | +|.|+|| |..++|.+++|..+|.+|.+++++
T Consensus 650 iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~ 729 (1051)
T KOG3513|consen 650 IQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGS 729 (1051)
T ss_pred EEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCC
Confidence 99998755 89999999 6 9999999 999999999999999999999844
Q ss_pred ccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 843 YSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 843 ~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
..++ +|+|+|++++.+||+++||+|.||+++..
T Consensus 730 ~~eL---vItW~Pl~~~~qNG~gfgY~Vswr~~g~~ 762 (1051)
T KOG3513|consen 730 PTEL---VITWEPLPEEEQNGPGFGYRVSWRPQGAD 762 (1051)
T ss_pred CceE---EEEeccCCHHHccCCCceEEEEEEeCCCC
Confidence 4333 66999999999999999999999999999
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=513.88 Aligned_cols=650 Identities=18% Similarity=0.225 Sum_probs=486.1
Q ss_pred ccee-ecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 28 QKFA-MEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 28 p~~~-~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
+.|. .+.+.+.+.+|+.+.|.|.... +...+.|..+..+.. ......|+.+.. ...|.|.+|..+|.+.
T Consensus 136 ~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~---~~~~~~r~~~~~-----~G~Lyfs~V~~~D~~~ 207 (1051)
T KOG3513|consen 136 PKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHF---VQIDNRRVFSQE-----NGNLYFSNVETSDFGN 207 (1051)
T ss_pred ccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcc---cccCcceeEecc-----cceEEEeecchhhcCc
Confidence 4555 4677899999999999999875 556899999886531 111223554432 3379999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEc----CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLV----PPDPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN 178 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~----~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~ 178 (1011)
|.|.+.+.. .........+.|++.. ...+|.+. .++......|+.+.|+|- +.|+|.|+|.|.|.++.....
T Consensus 208 Y~C~a~~~~-~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf-A~G~P~P~i~W~k~~g~~~~~ 285 (1051)
T KOG3513|consen 208 YICSATFPS-TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECF-ALGNPTPQIKWRKVDGKPPPR 285 (1051)
T ss_pred eEEEEEchh-hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEE-ecCCCCCcEEEEeCCCCCCCc
Confidence 999998832 2334556667777731 12233333 233567788999999999 899999999999998864332
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEE
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYC 258 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C 258 (1011)
... ......+|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...|..... +
T Consensus 286 r~~---------~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~--~~~~~v~v~a~P~w~~~-~--------------- 338 (1051)
T KOG3513|consen 286 RAT---------YSNYGKVLKIPNVQYEDAGEYECIAENSRGSA--THSGHVTVYAPPYWLQK-P--------------- 338 (1051)
T ss_pred cee---------eeccccEEEecccCcCCCeEEEEEEecccccc--eeeEEEEEecCchhhcc-c---------------
Confidence 211 11223589999999999999999999999965 77788888888876432 1
Q ss_pred EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEE
Q psy17146 259 KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 338 (1011)
Q Consensus 259 ~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W 338 (1011)
.+..+..|++++|.|.+.|.|.| +|+|
T Consensus 339 ----------------------------------------------------~d~~~~~gs~v~~eC~a~g~P~p-~v~W 365 (1051)
T KOG3513|consen 339 ----------------------------------------------------QDTEADTGSNVTLECKASGKPNP-TVKW 365 (1051)
T ss_pred ----------------------------------------------------ceeEecCCCCeEEEEEecCCCCC-ceEE
Confidence 34566778888888888888887 8999
Q ss_pred EECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEec-ceEeeCCCce--EecCCCcE
Q psy17146 339 YINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYG-PRFRARPYSV--QVDRGAGV 408 (1011)
Q Consensus 339 ~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~-P~~~~~p~~~--~v~~G~~v 408 (1011)
+|||.++.... ....|.|.+++.. |+|.|+|.|+|..|....++.|.|... |.|...|... .+..|..+
T Consensus 366 lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~-dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v 444 (1051)
T KOG3513|consen 366 LKNGEPLEPAERDPRYKIDDGTLIISNVQES-DSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTV 444 (1051)
T ss_pred eeCCeecCccCCCcceEEeCCEEEEEecccc-cCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeE
Confidence 99998887543 3578999999998 999999999999999999999999985 8888877554 68889999
Q ss_pred EEEeecCCCCCCceEEEeCCCc------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccC
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~ 482 (1011)
.|.|...+.|.|.+.|.|.+.. +....+++|.|.+++.+|+|.|+|.|+
T Consensus 445 ~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~------------------------- 499 (1051)
T KOG3513|consen 445 TIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAE------------------------- 499 (1051)
T ss_pred EEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEE-------------------------
Confidence 9999999999999999998762 235578999999999999999999998
Q ss_pred cccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcE
Q psy17146 483 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562 (1011)
Q Consensus 483 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~ 562 (1011)
|..|..+..+.|.|+.+++|...|.+..+..|+.+
T Consensus 500 ---------------------------------------------N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v 534 (1051)
T KOG3513|consen 500 ---------------------------------------------NKLGKAESTGNLIVKDATRITLAPSNTDVKVGESV 534 (1051)
T ss_pred ---------------------------------------------cccCccceEEEEEEecCceEEeccchhhhccCceE
Confidence 67788888999999999999999999999999999
Q ss_pred EEEEEEecCCCC--eEEEEecCCceee--------c----CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 563 NLLCDVDGNPAP--EITWIHEDSDKVV--------G----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 563 ~l~C~~~g~p~p--~v~W~k~~~~~~~--------~----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
+|.|.+.-.+.. .+.|.+||..+.. . +.+.|+|.++...|+|.|.|+|.. ...+.++.+.|.|..
T Consensus 535 ~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT-~~Ds~s~~A~l~V~g 613 (1051)
T KOG3513|consen 535 TLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQT-ALDSASARADLLVRG 613 (1051)
T ss_pred EEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEE-eecchhcccceEEec
Confidence 999999766654 7889999854321 1 125699999999999999999998 678899999999998
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
||--...-...-....++.|+...-.+- .|+ .......+.-. ........... ...+. .+-.+.++.+--.++|
T Consensus 614 pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI-~~Y~iq~rt~~--~~~W~~v~~vp~~~~~~-~sa~vv~L~Pwv~YeF 689 (1051)
T KOG3513|consen 614 PPGPPPDVHVDDISDTTARLSWSPGSDNNSPI-EKYTIQFRTPF--PGKWKAVTTVPGNITGD-ESATVVNLSPWVEYEF 689 (1051)
T ss_pred CCCCCCceeEeeeccceEEEEeecCCCCCCCc-eEEeEEecCCC--CCcceEeeECCCcccCc-cceeEEccCCCcceEE
Confidence 8763321111123345566666544332 231 11111000000 11111111110 01111 2456778888889999
Q ss_pred EEEEEcCCCCeEEEE---EEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc-
Q psy17146 707 NCSVSNPYGSDSVEI---MLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC- 781 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W- 781 (1011)
+.+|.|..|....+. .+... ...|. .|.++....-....+.++|
T Consensus 690 RV~AvN~iG~gePS~pS~~~rT~-------------------------------ea~P~~~P~nv~g~g~~~~eLvItW~ 738 (1051)
T KOG3513|consen 690 RVVAVNSIGIGEPSPPSEKVRTP-------------------------------EAAPSVNPSNVKGGGGSPTELVITWE 738 (1051)
T ss_pred EEEEEcccccCCCCCCccceecC-------------------------------CCCCccCCccccccCCCCceEEEEec
Confidence 999999999654332 22221 11333 8899999999999999999
Q ss_pred --cCCCCCCCCcCcceeeecCcc------------------------cccccccc---c---CCCCCCC-cccccccccc
Q psy17146 782 --KESDNSSNISDIKLEFRTGSS------------------------VSNVHLDY---A---GHDSETG-SESVHTRIGV 828 (1011)
Q Consensus 782 --~~~d~~s~I~~Y~ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~ 828 (1011)
++.+.+++=.+|+|.+|.... .|++.|+. | .|+|..| ...+...|+.
T Consensus 739 Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~ 818 (1051)
T KOG3513|consen 739 PLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE 818 (1051)
T ss_pred cCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence 666778899999999987544 56777777 4 7888777 6678899999
Q ss_pred cccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 829 PLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 829 P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
|..+|..+.....+. +...++|+||.. .||...||.|+|.+.+..+
T Consensus 819 P~~ap~~~~~~~~s~---s~~~v~W~~~~~--~nG~l~gY~v~Y~~~~~~~ 864 (1051)
T KOG3513|consen 819 PPVAPTKLSAKPLSS---SEVNLSWKPPLW--DNGKLTGYEVKYWKINEKE 864 (1051)
T ss_pred CCCCCccceeecccC---ceEEEEecCcCc--cCCccceeEEEEEEcCCCc
Confidence 999999998877222 223559999654 4599999999999999886
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=464.20 Aligned_cols=648 Identities=17% Similarity=0.197 Sum_probs=461.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc--
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-- 99 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-- 99 (1011)
..+-.|.++|+|. .+|..+.|.|..... ...|.|.|||..+.... .+|...+.++ +|.|.++..
T Consensus 39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~----d~~~~~LsNg-----Sl~i~~v~~~k 107 (1381)
T KOG4221|consen 39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVY----DDRRQLLSNG-----SLYISSVLASK 107 (1381)
T ss_pred cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhh----hhHHhhccCC-----ceeEeeecccc
Confidence 3466788999965 999999999998753 45899999997764332 2455555443 799999888
Q ss_pred ---CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 100 ---DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 100 ---~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
-|+|.|+|.+.-.+. ..+.+..+.|.+...+. +........+..|+.+.|.|. +.+.|.+.+.|.|++..+.
T Consensus 108 h~~~~eg~Yqc~atv~~~--gsi~Sr~a~v~~a~~~~--f~~~~~~~t~~~g~ta~f~c~-vn~e~~p~i~w~kn~~pl~ 182 (1381)
T KOG4221|consen 108 HNKVDEGVYQCLATVEDV--GSILSRTAKVALAGLAD--FALQPESTTLLYGQTALFSCE-VNAEPVPTIMWLKNDQPLP 182 (1381)
T ss_pred cccccCceEEEEEEcccc--ceeecceEEEEecccCc--cccCccceeEecCCcEEEEEE-EcCccCceeEEeccccccc
Confidence 689999999986533 35678888888876654 333444667789999999999 7789999999999998776
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
.+.++. ...+ +.|.|..+...|.|.|+|.+.+..... .+....|+|...|.......
T Consensus 183 ~~~r~i--~lps-------G~L~I~~~qp~d~g~yrc~vt~g~~~r-~S~~a~ltv~s~~~~~~~~~------------- 239 (1381)
T KOG4221|consen 183 LDSRVI--VLPS-------GALEISGLQPSDTGEYRCVVTGGASQR-TSNEAELTVLSDPGALNKLV------------- 239 (1381)
T ss_pred CCCcEE--EcCC-------CcEEecccccCCCceEEEEEecCCcCC-ccceeEEEecCCccccccee-------------
Confidence 655432 3333 489999999999999999999875543 35556666653333211100
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEE
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i 336 (1011)
.+.-.....+.+|+++.|+|.+.+.|.| .+
T Consensus 240 -------------------------------------------------fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v 269 (1381)
T KOG4221|consen 240 -------------------------------------------------FLDEPSNAVVVEGDDVVLECVVSGVPKP-SV 269 (1381)
T ss_pred -------------------------------------------------eecCCCccccccCCcEEEEEEecCCCCC-ce
Confidence 0011245678899999999999999987 99
Q ss_pred EEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEE
Q psy17146 337 RWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 337 ~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l 410 (1011)
.|.|||..+..+. ....|.|.+++.. |+|.|+|+|.|......+++.|+|..+|.|...|.+..+.++.++.|
T Consensus 270 ~Wlrng~~i~~ds~rivl~g~~slliS~a~~~-dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ 348 (1381)
T KOG4221|consen 270 KWLRNGEKISVDSYRIVLVGGSSLLISNATDD-DSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEF 348 (1381)
T ss_pred EEeeCCeeeeecceEEEEecccceEEeccccc-cCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeE
Confidence 9999999987753 2567889999987 99999999999777778999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEeCCCcee------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcc
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~ 484 (1011)
+|.+.|.|.|.+.|+|++...+ ....+.|.|..+-..|.|.|+|.++|..+. ..+.+.+.+...|....
T Consensus 349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~-a~a~a~l~vv~~p~~~~---- 423 (1381)
T KOG4221|consen 349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGS-AQAAAQLEVVPQPASAS---- 423 (1381)
T ss_pred eCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCccc-ccchhhheeccCCcccc----
Confidence 9999999999999999986533 333445999999999999999999974322 11222221111111000
Q ss_pred cccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEE
Q psy17146 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564 (1011)
Q Consensus 485 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l 564 (1011)
.+.+...|.++.+..-+...+
T Consensus 424 -----------------------------------------------------------s~~~~sap~~lv~~~~~srfi 444 (1381)
T KOG4221|consen 424 -----------------------------------------------------------SDLLPSAPRDLVANLVSSRFI 444 (1381)
T ss_pred -----------------------------------------------------------cCccccCCcceecccccceeE
Confidence 011112222333333333333
Q ss_pred EEE-----EecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEE--ecCCCceeeEEEEEEcCCCe
Q psy17146 565 LCD-----VDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 565 ~C~-----~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~--n~~~~~~s~~~~l~V~~~P~ 631 (1011)
.|. ..+.+.+.++|++..+.. .....+ +.+...+...++.|.|++. | ..|+...+..|.|..+|.
T Consensus 445 ~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n-~~g~g~sS~pLkV~t~pE 522 (1381)
T KOG4221|consen 445 QLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKN-EAGSGESSAPLKVTTQPE 522 (1381)
T ss_pred EEeecCccccCCCcceEEEEEecCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccC-cccCCccCCceEEecCCC
Confidence 333 455566788998764332 122223 6666667777777766665 5 567777777888877776
Q ss_pred eecCCceeeecCCcEEEEEEEEecCCCC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIPPPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
.+.. ...+..-.++|.+...|++. .|+|||...... +....+.+..+ ..+++|.++.+.+.+.|+|
T Consensus 523 ---gp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n------~~e~ti~gL~k~TeY~~~v 591 (1381)
T KOG4221|consen 523 ---GPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELRVENN------ATEYTINGLEKYTEYSIRV 591 (1381)
T ss_pred ---CCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEEEecC------ccEEEeecCCCccceEEEE
Confidence 2223 55666778899999887752 699999876655 23344444443 5799999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc---cCC
Q psy17146 709 SVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC---KES 784 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W---~~~ 784 (1011)
+|.|.+|....+..+.|... ...|. ||.|+++...+++++.++| +..
T Consensus 592 vA~N~~G~g~sS~~i~V~Tl-----------------------------sd~PsaPP~Nl~lev~sStsVrVsW~pP~~~ 642 (1381)
T KOG4221|consen 592 VAYNSAGSGVSSADITVRTL-----------------------------SDVPSAPPQNLSLEVVSSTSVRVSWLPPPSE 642 (1381)
T ss_pred EEecCCCCCCCCCceEEEec-----------------------------cCCCCCCCcceEEEecCCCeEEEEccCCCcc
Confidence 99999998766666665321 22344 7888999999999999999 455
Q ss_pred CCCCCCcCcceeeecCcc---------------------cccccccc---c---CCCCCCC-ccccccccccccc----c
Q psy17146 785 DNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GHDSETG-SESVHTRIGVPLA----G 832 (1011)
Q Consensus 785 d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~P~~----~ 832 (1011)
+.+..|++|+|.|+.... .|.++|.| | .|.|.+| -....|++..+.. +
T Consensus 643 t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ 722 (1381)
T KOG4221|consen 643 TQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGK 722 (1381)
T ss_pred cccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCC
Confidence 567899999999996433 89999999 4 8999999 4446677664443 2
Q ss_pred cccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeec
Q psy17146 833 PVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRD 874 (1011)
Q Consensus 833 P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~ 874 (1011)
|..+.... -.++..+.|+||+ ..|-.+.||+|.||+
T Consensus 723 ps~l~~~~----g~~si~vsW~Pp~--~~~~~vrgY~ig~r~ 758 (1381)
T KOG4221|consen 723 PSELHVHP----GSNSIVVSWTPPP--HPNIVVRGYKIGYRP 758 (1381)
T ss_pred Cceeeecc----CceeEEEEeCCCC--ChhhhhcceEEeeec
Confidence 22222222 1223355999954 455577889999984
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=454.88 Aligned_cols=577 Identities=22% Similarity=0.331 Sum_probs=434.6
Q ss_pred CCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe-eecCCceEEEEEEEEEeec-----cC
Q psy17146 133 DPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE-ASVDGRRTTVKSTLVLTPK-----KE 205 (1011)
Q Consensus 133 ~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~-----~~ 205 (1011)
.+|.|. .+..+.+..|+.++|.|. +.|.|+|+|+|||+|+....+..-... ...++ +|.+..+ ..
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~-asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g-------sLf~l~~ahg~~a~ 101 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCK-ASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG-------SLFLLRLAHGKKAG 101 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecC-CCCCCCCceecccCCcccCCCCCCCcceecCCc-------cEEEEecccCCccc
Confidence 344444 344666788999999999 899999999999999755442111000 12222 3333221 23
Q ss_pred cCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccc
Q psy17146 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 285 (1011)
Q Consensus 206 ~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~ 285 (1011)
.|.|.|+|.|+|..|.+ .+....|.+...+...-..+....+..|+.+.|+|......+.+.++|.|+|+++....
T Consensus 102 ~d~G~y~cvasn~~g~a-vSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~--- 177 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEA-VSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD--- 177 (1281)
T ss_pred CCCceeEeeecCcccee-eecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc---
Confidence 49999999999999987 23333343333332221222235566788888888877777777777777776553110
Q ss_pred eEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCC
Q psy17146 286 ELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365 (1011)
Q Consensus 286 ~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~ 365 (1011)
.++.....++.|.|.++.+. |+
T Consensus 178 ---------------------------------------------------------~~~~~lisgG~LlIsnvrks-D~ 199 (1281)
T KOG4222|consen 178 ---------------------------------------------------------VPIIALISGGNLLISNVRKS-DE 199 (1281)
T ss_pred ---------------------------------------------------------ceeEEEecCCcEEEeccccC-CC
Confidence 00001135678999999998 99
Q ss_pred cEEEEEEEcCCccc-eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce------eeccCCc
Q psy17146 366 SIVKCEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPN 438 (1011)
Q Consensus 366 G~Y~C~a~n~~g~~-~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~ 438 (1011)
|.|.|++.|..|.. +..++|.|.++|.|...|.+..+..|..+.+.|.+.|+|.|.+.|.|++... +..++.+
T Consensus 200 GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qt 279 (1281)
T KOG4222|consen 200 GTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQT 279 (1281)
T ss_pred ceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeecccc
Confidence 99999999999986 5789999999999999999999999999999999999999999999987543 3455688
Q ss_pred EEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeec
Q psy17146 439 LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518 (1011)
Q Consensus 439 L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~ 518 (1011)
|.|..++..|.|.|.|.|+
T Consensus 280 l~i~r~tp~deg~y~C~a~------------------------------------------------------------- 298 (1281)
T KOG4222|consen 280 LRIDRVTPTDEGTYVCPAE------------------------------------------------------------- 298 (1281)
T ss_pred ccccccCCCcccceeeecc-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred cCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------
Q psy17146 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------- 587 (1011)
Q Consensus 519 ~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------- 587 (1011)
|.+|..+..+.++|+.+|.|...|.+..+..|..++|.|.+.|+|.|.+.|.|.|.....
T Consensus 299 ---------n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r 369 (1281)
T KOG4222|consen 299 ---------NLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGR 369 (1281)
T ss_pred ---------ccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcc
Confidence 677888999999999999999999999999999999999999999999999999855332
Q ss_pred ---cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE----c-CC-Ceee-cCCceeeecCCcEEEEEEEEecCC
Q psy17146 588 ---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL----K-GR-PTII-SHRTQFGIPGDTARVECSAFSIPP 657 (1011)
Q Consensus 588 ---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V----~-~~-P~i~-~~~~~~v~~G~~v~L~C~~~g~p~ 657 (1011)
...++|+|.+++..|.|.|.|...+............++ . .| |.|. .+.+++..+|..+.|.|.+.|.|.
T Consensus 370 ~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~ 449 (1281)
T KOG4222|consen 370 GSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPT 449 (1281)
T ss_pred ceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCC
Confidence 234699999999999999999987632222222222221 2 34 4454 456788888999999999999999
Q ss_pred CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEe
Q psy17146 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTG 737 (1011)
Q Consensus 658 p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~ 737 (1011)
| .+.|+++|-.+...+ .+..+.. .++|+|.++...|.|.|+|+|.+..|+.+-+++|.|.+......
T Consensus 450 p-~i~wl~dg~~v~~~d-~~~s~~~-------~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q---- 516 (1281)
T KOG4222|consen 450 P-NISWLKDGCNVMNPD-SRISQQE-------IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQ---- 516 (1281)
T ss_pred C-CchhhhcccccccCC-cccceee-------eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccc----
Confidence 9 999999998887533 3333332 47999999999999999999999999999999999976522100
Q ss_pred eehHHHHHHHhhhheeeeeeccC-CCCCCCCcccccccccccccccCCC--CCCCCcCcceeeecCcc------------
Q psy17146 738 VIGCVVILVALTMVVILCQRKVK-KPPPGNGIEHHVTADGEKNQCKESD--NSSNISDIKLEFRTGSS------------ 802 (1011)
Q Consensus 738 ~~~~~~~~~~l~~~~~~~~~~~~-~~~p~~~~~~~~~~~s~~~~W~~~d--~~s~I~~Y~ve~~~~~~------------ 802 (1011)
++.+..-.. +.+|....+.+++..++.++|.+.+ +.-|+++|++++-....
T Consensus 517 --------------~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~ 582 (1281)
T KOG4222|consen 517 --------------FCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVK 582 (1281)
T ss_pred --------------cccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccc
Confidence 011111112 2277888999999999999993333 56799999999654321
Q ss_pred --------------------------------------------------------------------------------
Q psy17146 803 -------------------------------------------------------------------------------- 802 (1011)
Q Consensus 803 -------------------------------------------------------------------------------- 802 (1011)
T Consensus 583 ~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w 662 (1281)
T KOG4222|consen 583 TTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGW 662 (1281)
T ss_pred cceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeee
Confidence
Q ss_pred ----------------------------------------------cccccccc-c--------CCCCCCC-cccccccc
Q psy17146 803 ----------------------------------------------VSNVHLDY-A--------GHDSETG-SESVHTRI 826 (1011)
Q Consensus 803 ----------------------------------------------~p~~~Y~f-A--------~G~g~~s-s~~~~t~~ 826 (1011)
.|++.|+| . .-.|.++ +..+.|.+
T Consensus 663 ~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e 742 (1281)
T KOG4222|consen 663 TKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLE 742 (1281)
T ss_pred eeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccc
Confidence 78889999 2 3457777 88899999
Q ss_pred cccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccC
Q psy17146 827 GVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYN 876 (1011)
Q Consensus 827 ~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~ 876 (1011)
++|+++|.++..-......++...++|.|++.+.+||+.+||.|+.---.
T Consensus 743 ~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e 792 (1281)
T KOG4222|consen 743 EPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGE 792 (1281)
T ss_pred cCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCc
Confidence 99999999975544333356666779999999999999999998765544
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=443.01 Aligned_cols=537 Identities=17% Similarity=0.251 Sum_probs=403.0
Q ss_pred cCCCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC-----cCCcEEEEEEEeC
Q psy17146 146 TEDREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE-----HHNTTFTCQAQNT 218 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-----~d~G~Y~C~a~n~ 218 (1011)
.+|..+.|.|.. ... +.+.|+|.||+..+............++ .|-|.++.. -|+|.|+|.|.-.
T Consensus 52 ~~~~svlLecs~-~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~v~~~kh~~~~eg~Yqc~atv~ 123 (1381)
T KOG4221|consen 52 MEGSSVLLECSA-YAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISSVLASKHNKVDEGVYQCLATVE 123 (1381)
T ss_pred ccccceEEeccc-cccCCCCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEeeecccccccccCceEEEEEEcc
Confidence 679999999973 222 4789999999887755322222233343 566666554 8899999999977
Q ss_pred CCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCC
Q psy17146 219 ADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 298 (1011)
Q Consensus 219 ~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~ 298 (1011)
.-..-.+....|.+...+.+....
T Consensus 124 ~~gsi~Sr~a~v~~a~~~~f~~~~-------------------------------------------------------- 147 (1381)
T KOG4221|consen 124 DVGSILSRTAKVALAGLADFALQP-------------------------------------------------------- 147 (1381)
T ss_pred ccceeecceEEEEecccCccccCc--------------------------------------------------------
Confidence 433334555566555555443221
Q ss_pred cEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc-----CccEEEEeecccccCCcEEEEEEE
Q psy17146 299 SIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDSIVKCEVH 373 (1011)
Q Consensus 299 ~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~-----~~~~L~I~~~~~~~d~G~Y~C~a~ 373 (1011)
.+..+..|+++.|.|.+.+.+.+ .+.|.||+.++.... ..+.|.|.+++.. |.|.|+|.|+
T Consensus 148 ------------~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~-d~g~yrc~vt 213 (1381)
T KOG4221|consen 148 ------------ESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQPLPLDSRVIVLPSGALEISGLQPS-DTGEYRCVVT 213 (1381)
T ss_pred ------------cceeEecCCcEEEEEEEcCccCc-eeEEecccccccCCCcEEEcCCCcEEecccccC-CCceEEEEEe
Confidence 23456677777777777776665 788888888766643 3578999999998 9999999999
Q ss_pred cCCcc-ceeeEEEEEEecc------eEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------eccCCcE
Q psy17146 374 NDVGK-SEDSETLDVTYGP------RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNL 439 (1011)
Q Consensus 374 n~~g~-~~~s~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L 439 (1011)
+..-. .+..+.|+|...| .|...|....+.+|+++.|+|.+.|.|.|.|.|.|++..+. ....++|
T Consensus 214 ~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~sl 293 (1381)
T KOG4221|consen 214 GGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSL 293 (1381)
T ss_pred cCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccce
Confidence 86543 3677888887433 46778999999999999999999999999999999886543 3346789
Q ss_pred EEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeecc
Q psy17146 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519 (1011)
Q Consensus 440 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~ 519 (1011)
.|.+++.+|+|+|+|.|.|.
T Consensus 294 liS~a~~~dSg~YtC~Atn~------------------------------------------------------------ 313 (1381)
T KOG4221|consen 294 LISNATDDDSGKYTCRATNT------------------------------------------------------------ 313 (1381)
T ss_pred EEeccccccCceEEEEecCC------------------------------------------------------------
Confidence 99999999999999999852
Q ss_pred CCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee------cCCCcE
Q psy17146 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV------GNSPNL 593 (1011)
Q Consensus 520 ~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~------~~~~~L 593 (1011)
....++.+.|.|..+|.|...|.+..+.++.++.|.|.+.|.|.|.+.|+|+|..+.. ..++.|
T Consensus 314 ----------~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~l 383 (1381)
T KOG4221|consen 314 ----------NDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNL 383 (1381)
T ss_pred ----------CcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCc
Confidence 2234567788899999999999999999999999999999999999999999976543 334569
Q ss_pred EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-------cCCceeeecCCcEEEEEEEE-----ecCCCCeE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-------SHRTQFGIPGDTARVECSAF-----SIPPPEKV 661 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-------~~~~~~v~~G~~v~L~C~~~-----g~p~p~~v 661 (1011)
+|..+-..|.|.|+|.++| +.|.+.+.+.|.|...|.+. .+.+..+..-+..-+.|... +.+.+ .+
T Consensus 384 rIlgi~~sdeg~yQcvaen-~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~-~~ 461 (1381)
T KOG4221|consen 384 RILGIVKSDEGFYQCVAEN-DAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNIS-TY 461 (1381)
T ss_pred EEEEEecccchhhhhhhcc-CcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcc-eE
Confidence 9999999999999999999 67888888888664444332 12333333333434444432 33445 78
Q ss_pred EEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeeh
Q psy17146 662 TWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIG 740 (1011)
Q Consensus 662 ~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~ 740 (1011)
+|++. +..+. .+..... ..| -.+++.++.......+.|.|.|..|+...+..|.|..
T Consensus 462 ~v~~~~~~~~r----er~~~ts---s~g--~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t------------- 519 (1381)
T KOG4221|consen 462 TVFYKVEGDVR----ERLQNTS---SPG--IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTT------------- 519 (1381)
T ss_pred EEEEecCCchh----hhheecc---CCc--eEEEeeecccceeEEEEEeccCcccCCccCCceEEec-------------
Confidence 88863 32222 1111111 012 5677888888877788888999999999988888852
Q ss_pred HHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------
Q psy17146 741 CVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------- 802 (1011)
Q Consensus 741 ~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------- 802 (1011)
.+.+|..++....+..++.+.| ++.-++++|++|++.|.....
T Consensus 520 -------------------~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~g 580 (1381)
T KOG4221|consen 520 -------------------QPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTING 580 (1381)
T ss_pred -------------------CCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeec
Confidence 2223434888888899999999 777799999999999998733
Q ss_pred -cccccccc---c---CCCCCCC-cccccccccccccccccCCcccccccccCcCCC--CCCCCCCCCCCCccEEEEEee
Q psy17146 803 -VSNVHLDY---A---GHDSETG-SESVHTRIGVPLAGPVPMDQRYHRYSSADFADA--VFPSLKPDGHNNNGFVFSDFI 872 (1011)
Q Consensus 803 -~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i--~W~p~~~~~~ng~~~gY~v~~ 872 (1011)
.|+++|.| | .|.|..| ...++|.+++|++||.|+.... .++++| +|.||+++.+||.+.||+|.|
T Consensus 581 L~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev-----~sStsVrVsW~pP~~~t~ng~itgYkIRy 655 (1381)
T KOG4221|consen 581 LEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEV-----VSSTSVRVSWLPPPSETQNGQITGYKIRY 655 (1381)
T ss_pred CCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEe-----cCCCeEEEEccCCCcccccceEEEEEEEe
Confidence 89999999 5 8999888 6779999999999999999887 223333 999999999999999999999
Q ss_pred eccCCC
Q psy17146 873 RDYNQT 878 (1011)
Q Consensus 873 r~~~~~ 878 (1011)
|.....
T Consensus 656 ~~~~~~ 661 (1381)
T KOG4221|consen 656 RKLSRE 661 (1381)
T ss_pred cccCcc
Confidence 955443
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=377.92 Aligned_cols=535 Identities=21% Similarity=0.317 Sum_probs=379.4
Q ss_pred HhcccceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEe-
Q psy17146 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIY- 95 (1011)
Q Consensus 18 ~~~~~~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~- 95 (1011)
+.+.-...++|++..+|.++.+.-|+.++|.|.+.+ +.++++|+|+|.... .......|+.+- +...+-|++.
T Consensus 22 ~~~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~--~~e~~shR~~lp---~gsLf~l~~ah 96 (1281)
T KOG4222|consen 22 CPSLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVF--KGEPGSHRFLLP---DGSLFLLRLAH 96 (1281)
T ss_pred ccccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccC--CCCCCCcceecC---CccEEEEeccc
Confidence 344556677999999999999999999999999999 488999999996332 222233344331 1122222222
Q ss_pred --ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 96 --PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 96 --~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
+.. .|.|.|.|+++|..+ .-.|..+.|.|....+...+.... +.+..|+.+.|+|.-..|.|.+.+.|.|++.
T Consensus 97 g~~a~-~d~G~y~cvasn~~g---~avSr~a~L~vavlrddfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~ 171 (1281)
T KOG4222|consen 97 GKKAG-HDHGVYSCVASNRLG---EAVSRGASLIVAVLRDDFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGK 171 (1281)
T ss_pred CCccc-CCCceeEeeecCccc---eeeecCceEEEEEechhcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCC
Confidence 122 399999999998643 235677888888777776666554 6777899999999778899999999999999
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
.+... ....+....++.|.|.+++..|+|+|.|++.|..|.. .+...+|.|.+.|.+... +
T Consensus 172 pl~~~-------~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R-eS~~A~lsv~e~P~f~~r-p---------- 232 (1281)
T KOG4222|consen 172 PLDHY-------DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER-ESIPARLSVQEKPWFWKR-P---------- 232 (1281)
T ss_pred ccccc-------cceeEEEecCCcEEEeccccCCCceeeeeeccccccc-ccccceeeeccCCccccc-c----------
Confidence 88621 1122334455689999999999999999999999976 355566777777765432 2
Q ss_pred EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 254 v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
.+..+.+|..+.+.|.+.|.|.|
T Consensus 233 ---------------------------------------------------------~~~~v~~g~~~~f~c~v~GdP~P 255 (1281)
T KOG4222|consen 233 ---------------------------------------------------------KDLAVLVGAAAEFDCRVGGDPQP 255 (1281)
T ss_pred ---------------------------------------------------------ccceeecccccccccccCCCCCC
Confidence 23445566667777777777766
Q ss_pred cEEEEEECCeecCCC-----cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcE
Q psy17146 334 MKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 408 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~-----~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v 408 (1011)
+++|.|++..++.. .+..+|.|.+++.. |.|.|.|.++|..|..+.++.++|..+|.|...|.+..+..|..+
T Consensus 256 -~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~-deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 256 -TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPT-DEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTV 333 (1281)
T ss_pred -ceeeeccCCCCCccceeeeeccccccccccCCC-cccceeeeccccccccccccceEEecCcccccccCccccccCceE
Confidence 78888877666554 34478899999987 999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEeCCCcee--------------eccCCcEEEEeeccCCCeEEEEEEEEcCCccee-eEEEEEEc
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDKV--------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~~--------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s-~~~~v~v~ 473 (1011)
+|.|.+.|+|.|.+.|.|.+.... +...+.|+|.++...|.|.|.|...+..+.... +.+.+.-
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~- 412 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTD- 412 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEe-
Confidence 999999999999999999875322 334568999999999999999997653222211 1111100
Q ss_pred CCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEE-EecceeecCCc
Q psy17146 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDV-TYGPRFRARPY 552 (1011)
Q Consensus 474 ~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V-~~~P~~~~~p~ 552 (1011)
.+.- .-+|.+...+.
T Consensus 413 ----------------------------------------------------------------~~~~~rPpp~i~~g~~ 428 (1281)
T KOG4222|consen 413 ----------------------------------------------------------------VLTDSRPPPIIEQGPA 428 (1281)
T ss_pred ----------------------------------------------------------------eeccCCCCceeeeccc
Confidence 0000 12356667788
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
++.+.++..+.|.|.+.+.|.+.+.|++++-.+. ....++|+|.++...|.|.|+|.|.+ ..++.+.++.|.
T Consensus 429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~-~~ges~wSatl~ 507 (1281)
T KOG4222|consen 429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASD-ESGESTWSATLT 507 (1281)
T ss_pred ccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccC-cccccccceeeE
Confidence 8899999999999999999999999999985543 33347999999999999999999998 567777788888
Q ss_pred EcCCCe---ee---cCCce---------eeecCCcEEEEEEEEec--CCCC---eEEEEECCeEecccCCCCeEEecCCc
Q psy17146 626 LKGRPT---II---SHRTQ---------FGIPGDTARVECSAFSI--PPPE---KVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 626 V~~~P~---i~---~~~~~---------~v~~G~~v~L~C~~~g~--p~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
|.+.-. +. .+... .-..+..++|....... --|+ .+..|-. .+. ...+.+-.
T Consensus 508 v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~--~~~---etw~~ta~--- 579 (1281)
T KOG4222|consen 508 VEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSP--DLG---ETWQTTAG--- 579 (1281)
T ss_pred hhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhh--hhc---cccccccc---
Confidence 754311 11 01111 11123334443332111 0010 0110000 000 00000000
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.-...+..|+.+.+..+..+.|.|.|..|
T Consensus 580 -~v~~t~~~I~gL~P~~sylf~vRa~n~~G 608 (1281)
T KOG4222|consen 580 -RVKTTTYAIRGLKPNLSYLFLVRAENEQG 608 (1281)
T ss_pred -ccccceeeecCcCccceeeeeeecccccc
Confidence 11246889999999999999999999999
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=261.00 Aligned_cols=287 Identities=21% Similarity=0.358 Sum_probs=228.4
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCC--CCCCceEEEeCCCcee----------------------eccCCcEEEEeec
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSDKV----------------------VGNSPNLTLLMTS 445 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g--~p~p~v~W~k~~~~~~----------------------~~~~~~L~I~~v~ 445 (1011)
.|++...|.++....|+.++|+|.+.+ ..+.++.|.+++.-.. ....+.|.+.+|.
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 577888899999999999999999965 4556999999874211 1113458999999
Q ss_pred cCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceE
Q psy17146 446 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 525 (1011)
Q Consensus 446 ~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~ 525 (1011)
-.|+|.|+|++.|.-+...+.
T Consensus 583 ~td~grYQCVvtN~FGStysq----------------------------------------------------------- 603 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQ----------------------------------------------------------- 603 (873)
T ss_pred cccCceEEEEEecccCcchhh-----------------------------------------------------------
Confidence 999999999999765444433
Q ss_pred EEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----------eeecCCCcEEE
Q psy17146 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTL 595 (1011)
Q Consensus 526 ~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----------~~~~~~~~L~I 595 (1011)
.+.|.|...|.|...|.+.++..|+.+.|.|.++|.|.|.|.|.|+|.. .+..++..+-|
T Consensus 604 ----------k~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~I 673 (873)
T KOG4194|consen 604 ----------KAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFI 673 (873)
T ss_pred ----------eeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEE
Confidence 3455677889999999999999999999999999999999999999854 23455678999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.| ..|+.++.++|.|.+.|.+..| .+..|..|+++.|.|.+.|.|. | ...|+|++++|...
T Consensus 674 tnvk~eD~GiYtC~A~n-~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~p-r~~W~k~d~pil~t 751 (873)
T KOG4194|consen 674 TNVKIEDQGIYTCTAQN-VAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADP-RLEWFKEDKPILIT 751 (873)
T ss_pred ecccccccceeEEeeec-cccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCc-cccccCCCCceEEe
Confidence 99999999999999999 6899999999999999988855 6788999999999999999998 8 99999999998753
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC----------CCeEEEEEeeehHHH
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS----------FPLLLILTGVIGCVV 743 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~----------~~~~~~~~~~~~~~~ 743 (1011)
. +.... .....|.+.+...+|+|.|+|...|..|.....+.+.+... ....+.+++++++++
T Consensus 752 ~--rh~f~------d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~v 823 (873)
T KOG4194|consen 752 E--RHTFP------DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSV 823 (873)
T ss_pred e--cccCC------CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeee
Confidence 2 22221 22468999999999999999999999998877776665322 223455555666555
Q ss_pred HHHHhhhheeee
Q psy17146 744 ILVALTMVVILC 755 (1011)
Q Consensus 744 ~~~~l~~~~~~~ 755 (1011)
.-.....+.++.
T Consensus 824 d~~~~~~~~Iy~ 835 (873)
T KOG4194|consen 824 DTANHRRLTIYS 835 (873)
T ss_pred ccceeeeEEEEe
Confidence 554444444433
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=268.70 Aligned_cols=642 Identities=17% Similarity=0.198 Sum_probs=415.8
Q ss_pred ecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
..+-+.-+..|++|.|+|++.+. ...+.|++.+..+. +|+..+.+. +|.......+.-+.|.|++
T Consensus 12 ~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~c~a 78 (741)
T KOG3515|consen 12 SSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--------GRYATIADP-----TLVTTGDVRDTVAELNCRA 78 (741)
T ss_pred CCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--------cccccccCC-----ceeeecchhhhhhhhhhhh
Confidence 33444588999999999999974 44899999987653 455444332 6777777777789999999
Q ss_pred EeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEE-EccCCCCCcEEEEEeCCceeeece--eEEEeee
Q psy17146 110 STGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTVMSNV--RVTEEAS 186 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C-~~~~g~P~~~i~W~k~~~~l~~~~--~~~~~~~ 186 (1011)
.|... ........+.|..++..... .......++..+.+.| ....+.|.+.++|..++....... .......
T Consensus 79 ~ns~~---~~~~~~~~l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~ 153 (741)
T KOG3515|consen 79 FNSVG---MPSRCPMILDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAG 153 (741)
T ss_pred ccccc---CceecceeeccccCcccccc--ccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccc
Confidence 88632 33455667777776653222 2233456788899999 557788999999999876654422 1211111
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEEEEEeCCc-eEEEecCc-ceeecCceEEEEEEcccC
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKLLVKYAPK-VQVSVIGS-NRLVEGTDVRLYCKAEAN 263 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v~v~~~P~-~~~~~~~~-~~v~~g~~v~L~C~~~~~ 263 (1011)
.-+......+.|++...+.++.|.|+|.|.+..... ..-..+.+.+..... +.+..... ..+.+|+.+.|.|.+.+.
T Consensus 154 a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg 233 (741)
T KOG3515|consen 154 ALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGG 233 (741)
T ss_pred ccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcC
Confidence 222222445678999999999999999999842222 112223333333222 22222222 467899999999999999
Q ss_pred CCccEEEEEeCCcccCCcc-----c----cceEEEEeeecccCCcEEEEEEEE--------Ee----------eCCcccc
Q psy17146 264 PSHMKYRWYINDQPVPAAA-----S----ATELYLTNITRHQHDSIVKCEVQV--------SV----------IGSNRLV 316 (1011)
Q Consensus 264 ~~~~~i~W~~~~~~l~~~~-----~----~~~l~i~~~~~~~~~~~~~c~~~~--------~~----------~~~~~v~ 316 (1011)
.+...++|+++..++...+ . ..........+.+.....+|.+.. .+ .....+.
T Consensus 234 ~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls 313 (741)
T KOG3515|consen 234 NPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLS 313 (741)
T ss_pred CcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccc
Confidence 9999999999988776641 0 111222333445555567777653 11 1234478
Q ss_pred cCCcEEEEEEeecCCCccEEEEEECCeecCCCc------------CccEEEEeecccccCCcEEEEEEEcCCccc--eee
Q psy17146 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------SATELYLTNITRHQHDSIVKCEVHNDVGKS--EDS 382 (1011)
Q Consensus 317 ~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~--~~s 382 (1011)
.|....+.|...+..++..+.|+|+........ ....+......+ .|.|.|+|.+.|..... +..
T Consensus 314 ~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~-~~~g~v~c~a~~~~~~~~sss~ 392 (741)
T KOG3515|consen 314 SGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQ-QDGGQVTCPADNLELAHSSSSS 392 (741)
T ss_pred cccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccch-hcCceEEccccccccccccccc
Confidence 899999999888776667999999665543321 012233344444 49999999998877544 355
Q ss_pred EEEEEEecceEee-CCCceEecCCCcEEEEeecCCCC-CCceEEEeCCCcee---------eccCCcEEEEeeccCCCeE
Q psy17146 383 ETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 383 ~~l~V~~~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~ 451 (1011)
..|.+..+|.+.. ....+...+++.....-.+.++| .+.+.|.+++.+.. ........+.++...|.|.
T Consensus 393 ~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 393 FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGS 472 (741)
T ss_pred eeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCc
Confidence 6677777777654 34444555666655554444555 46899998864332 3334445577899999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCC
Q psy17146 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G 531 (1011)
|.|.+.|..++
T Consensus 473 y~~tatns~gg--------------------------------------------------------------------- 483 (741)
T KOG3515|consen 473 YGLTATNSPGG--------------------------------------------------------------------- 483 (741)
T ss_pred ceeeeccCCCc---------------------------------------------------------------------
Confidence 99999974332
Q ss_pred CCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC--eEEEEecCCce-----------eecCCCcEEEeec
Q psy17146 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDK-----------VVGNSPNLTLLMT 598 (1011)
Q Consensus 532 ~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~-----------~~~~~~~L~I~~v 598 (1011)
......+.+...|.+...-..+....|+++.+.|.....+.- .+.|.+.+... .....+.+++...
T Consensus 484 -~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~ 562 (741)
T KOG3515|consen 484 -AQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGN 562 (741)
T ss_pred -eeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeeccc
Confidence 222222334444444444445556677889999998777654 68899987543 1233467888887
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCC-c-eeeecC-CcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR-T-QFGIPG-DTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~-~-~~v~~G-~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
....++.|.|.+.+ ..........|.+..++...... . ....+| ..++.+|.+.|.|.+ .++|-|+...... ..
T Consensus 563 ~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~-~~~~~k~p~~~~~-~~ 639 (741)
T KOG3515|consen 563 SSLQASETACVVDG-SSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVASGVPST-SFTTAKTPLQTTE-GP 639 (741)
T ss_pred ccccccceEEeecC-CCCccccceEEEecccccccccCCceeeeccCcccccccceecccccc-eeecccCCCcccC-Cc
Confidence 77888999999998 44455556667776666655332 1 112222 278999999999999 8999999877432 22
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeee
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1011)
..+.+.......+..++..+..+...|.+ ..|.+.|.+|++..++.+.-
T Consensus 640 ~~~~~~~~~~~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~~------------------------------ 688 (741)
T KOG3515|consen 640 HIREKATQQGQTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIHS------------------------------ 688 (741)
T ss_pred eEEEeeeeccccccccccccCCcchhhhc-ceeeecccCCCccccceecC------------------------------
Confidence 22222222222233345555555555555 99999999999987776643
Q ss_pred eeccCCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeec
Q psy17146 756 QRKVKKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRT 799 (1011)
Q Consensus 756 ~~~~~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~ 799 (1011)
-..+-.|.++....++..++.+.| |..|++.+ +.|.++|..
T Consensus 689 --~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~-q~f~~~~~~ 730 (741)
T KOG3515|consen 689 --GTASVGPINLTYDNLTYSTISLEWMPGFDGGLQ-QRFFLKYYD 730 (741)
T ss_pred --CcCCCCccceEeeeeeeeeeceeeeeccccccc-cceeeehhh
Confidence 123338889999999999999999 88887754 455555544
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=254.24 Aligned_cols=250 Identities=23% Similarity=0.399 Sum_probs=214.1
Q ss_pred CcccccCCcEEEEEEeecCC-CccEEEEEECCeecCCC---------------------cCccEEEEeecccccCCcEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANP-SHMKYRWYINDQPVPAA---------------------ASATELYLTNITRHQHDSIVK 369 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g~~l~~~---------------------~~~~~L~I~~~~~~~d~G~Y~ 369 (1011)
......|+.++|+|.+.+.. .|+++.|.|+++....- .....|.+.|++.. |+|.|+
T Consensus 512 ~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~t-d~grYQ 590 (873)
T KOG4194|consen 512 TVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFT-DEGRYQ 590 (873)
T ss_pred HhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecc-cCceEE
Confidence 34567899999999999853 67899999988743321 12367899999998 999999
Q ss_pred EEEEcCCccc-eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCc----------eeeccCCc
Q psy17146 370 CEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPN 438 (1011)
Q Consensus 370 C~a~n~~g~~-~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~----------~~~~~~~~ 438 (1011)
|+++|.+|+. +..++|.|...|.|...|.+.++..|+.++|.|.+.|.|.|+|.|.|+|.. .+......
T Consensus 591 CVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~ 670 (873)
T KOG4194|consen 591 CVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDV 670 (873)
T ss_pred EEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCE
Confidence 9999999987 688999999999999999999999999999999999999999999999854 12455677
Q ss_pred EEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeec
Q psy17146 439 LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518 (1011)
Q Consensus 439 L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~ 518 (1011)
+.|.+++.+|.|.|+|.|.
T Consensus 671 f~Itnvk~eD~GiYtC~A~------------------------------------------------------------- 689 (873)
T KOG4194|consen 671 FFITNVKIEDQGIYTCTAQ------------------------------------------------------------- 689 (873)
T ss_pred EEEecccccccceeEEeee-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred cCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCC-CeEEEEecCCceeec-------CC
Q psy17146 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKVVG-------NS 590 (1011)
Q Consensus 519 ~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k~~~~~~~~-------~~ 590 (1011)
|.+|..+..+.|.|...|.|..+.+++.+..|+++.|.|.+++.|. |.+.|+|+++.+... ++
T Consensus 690 ---------n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~d 760 (873)
T KOG4194|consen 690 ---------NVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGD 760 (873)
T ss_pred ---------ccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCC
Confidence 5677788888999999999999999999999999999999999988 999999999876543 35
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
.-|.+.+...+|+|.|+|...| ..+.......+.+...+...
T Consensus 761 Qllvv~~~~~~daG~yTcem~~-~~~~~~~~i~l~~~~~~~~~ 802 (873)
T KOG4194|consen 761 QLLVVKENLVEDAGIYTCEMSN-TLGTERIHICLLVYQKKKCR 802 (873)
T ss_pred eEEEEEehhhhhcceEEEEEEe-eccceeeEEEEEEeecCCcc
Confidence 6789999999999999999999 56666666666665555444
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=244.37 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=177.4
Q ss_pred eEecCCCcEEEEeec-----CCCCCCceEEEeCCCc---ee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 400 VQVDRGAGVNLLCDV-----DGNPAPEITWIHEDSD---KV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 400 ~~v~~G~~v~l~C~~-----~g~p~p~v~W~k~~~~---~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
..+.+|+.+.|.|.+ .|+|.++++|+|++.. .. ...+..|.|.++..+|+|.|+|.|.|..+. .+..+.|
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L 114 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNL 114 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEE
Confidence 356679999999997 7899999999999753 22 223445889999999999999999975422 2233333
Q ss_pred EEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecC
Q psy17146 471 YLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRAR 550 (1011)
Q Consensus 471 ~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~ 550 (1011)
.|... .+|.+...
T Consensus 115 ~V~~~-------------------------------------------------------------------~~~~~~~~ 127 (326)
T PHA02785 115 TIVSV-------------------------------------------------------------------SESNIDLI 127 (326)
T ss_pred EEEec-------------------------------------------------------------------CCCcccee
Confidence 33211 11112222
Q ss_pred CceEEEcCCCcEEEEEE-----EecCCCCeEEEEecCC----ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce---
Q psy17146 551 PYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDS----DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV--- 618 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~-----~~g~p~p~v~W~k~~~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--- 618 (1011)
+....+.+|+.+.|.|. ..+.|.+.++|++++. +.....++.|.|.+++.+|+|.|+|.|.|. .+..
T Consensus 128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~-~g~~~~~ 206 (326)
T PHA02785 128 SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYI-YGDKTYN 206 (326)
T ss_pred eccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEec-cCCEEEe
Confidence 23445779999999997 3567889999998652 222334578999999999999999999993 3332
Q ss_pred -eeEEEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccC---CCCeEEecCCcC-c-
Q psy17146 619 -GAEATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGS---SDDYSVLEDPLK-E- 687 (1011)
Q Consensus 619 -s~~~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~---~~~~~~~~~~~~-~- 687 (1011)
+..+.|.|. .||.+..+....+..|+.++|.|.+.|.|.+ ..+.|++||..+...+ ..++........ +
T Consensus 207 ~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
T PHA02785 207 VTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDK 286 (326)
T ss_pred EEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccc
Confidence 344566664 4666766777778889999999999998874 2799999999886422 123333321111 1
Q ss_pred --cceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 688 --GIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 688 --~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
...+.|+|.+++.+|.|.|+|.|.|..|...
T Consensus 287 ~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 287 RRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred ceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1246899999999999999999999986443
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=234.04 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=171.4
Q ss_pred CCcccccCCcEEEEEEe-----ecCCCccEEEEEECCeecC---CCcCccEEEEeecccccCCcEEEEEEEcCCccceee
Q psy17146 311 GSNRLVEGTDVRLYCKA-----EANPSHMKYRWYINDQPVP---AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~-----~~~p~~~~i~W~k~g~~l~---~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s 382 (1011)
....+.+|+.+.|.|.+ .+.|.+ ++.|+|+|.... ....+..|.|.++..+ |+|.|+|.|.|..|..+.+
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~-DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGADNDRIIPIDNGSNMLILNPTQS-DSGIYICITKNETYCDMMS 111 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCccceEEEccCCceEEEcccCcc-cCeEEEEEEECCCcceEEE
Confidence 34567789999999997 577765 999999975321 1134556889999887 9999999999999988888
Q ss_pred EEEEEEec--ceEeeCCCceEecCCCcEEEEee-----cCCCCCCceEEEeCCC----ceeeccCCcEEEEeeccCCCeE
Q psy17146 383 ETLDVTYG--PRFRARPYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDS----DKVVGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 383 ~~l~V~~~--P~~~~~p~~~~v~~G~~v~l~C~-----~~g~p~p~v~W~k~~~----~~~~~~~~~L~I~~v~~~d~G~ 451 (1011)
+.|.|... |.+...+....+.+|+.+.|.|. ..+.|.+.++|+++.. ......++.|.|.+++.+|+|.
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGY 191 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeE
Confidence 88888653 33433445556889999999997 2467899999998652 1122335689999999999999
Q ss_pred EEEEEEEcCCcce---eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEc
Q psy17146 452 YYCKASVMGFPEV---GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHN 528 (1011)
Q Consensus 452 Y~C~a~n~~~~~~---s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n 528 (1011)
|+|.|.|..+... ...+.+.|..+
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~----------------------------------------------------- 218 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDR----------------------------------------------------- 218 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEecc-----------------------------------------------------
Confidence 9999998544322 11222222110
Q ss_pred CCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceee-----------c------
Q psy17146 529 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVV-----------G------ 588 (1011)
Q Consensus 529 ~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~-----------~------ 588 (1011)
..+|. ...|....+..|+.++|.|.+.|.|.+ .+.|+|||..+.. .
T Consensus 219 -------------~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~ 284 (326)
T PHA02785 219 -------------IIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTT 284 (326)
T ss_pred -------------CCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccc
Confidence 01233 234567778889999999999998874 8999998753211 0
Q ss_pred -----CCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 589 -----NSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 589 -----~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
..+.|+|.+++.+|+|.|+|.|.|.
T Consensus 285 ~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~ 314 (326)
T PHA02785 285 DKRRVITSRLNINPVKEEDATTFTCMAFTI 314 (326)
T ss_pred ccceeeeEEEEECCcchhcCeeeEEEEEec
Confidence 1247999999999999999999994
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=209.97 Aligned_cols=494 Identities=18% Similarity=0.204 Sum_probs=314.1
Q ss_pred eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
-+.+|+.|.|.|.+..+.|.+.++|++.+..+. .+ +......+|......++.-+.|.|++.|..+..
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~- 85 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GR---------YATIADPTLVTTGDVRDTVAELNCRAFNSVGMP- 85 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc--cc---------cccccCCceeeecchhhhhhhhhhhhcccccCc-
Confidence 678999999999977777788999999776554 11 122233578888888999999999999996655
Q ss_pred eEEEEEEEEEeCCceEEEecCcceeecCceEEEEE-EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEE
Q psy17146 224 KVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYC-KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK 302 (1011)
Q Consensus 224 ~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C-~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~ 302 (1011)
....+.+.+.++|... ..........+..+.+.| ...+..+...+.|+.++......
T Consensus 86 ~~~~~~l~v~~~pa~~-~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~--------------------- 143 (741)
T KOG3515|consen 86 SRCPMILDVDYPPACL-PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNA--------------------- 143 (741)
T ss_pred eecceeeccccCcccc-ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecc---------------------
Confidence 4556667777766532 222333445667777777 44455566777787765422111
Q ss_pred EEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-cCccEEEEeecccccCCcEEEEEEEcC---Ccc
Q psy17146 303 CEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-ASATELYLTNITRHQHDSIVKCEVHND---VGK 378 (1011)
Q Consensus 303 c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~---~g~ 378 (1011)
.+....+-|- .+... .....+.+..... .+.|.|+|.|.|. .+.
T Consensus 144 ---------------------------~~~~~~~~~~----a~gss~t~~s~l~~~v~Rk-a~~g~~tC~A~nr~s~~l~ 191 (741)
T KOG3515|consen 144 ---------------------------VNQRGRVGAG----ALGSSYTEPSLLKQTVSRK-ADNGNYTCPANNRNSPGLS 191 (741)
T ss_pred ---------------------------cCCccccccc----ccCceeccccceeeEEEEe-cCCceeEcccccccCcccc
Confidence 1100011110 00000 1233455555544 4999999999884 333
Q ss_pred ceeeEEEEEEecce-E-eeC-CCceEecCCCcEEEEeec-CCCCCCceEEEeCCCceeec-----cCC------cEEEEe
Q psy17146 379 SEDSETLDVTYGPR-F-RAR-PYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG-----NSP------NLTLLM 443 (1011)
Q Consensus 379 ~~~s~~l~V~~~P~-~-~~~-p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~-----~~~------~L~I~~ 443 (1011)
.-....+.|..+.. + ... ..-..+.+|+.+.|.|.+ .|+|.+.++|+++....... ... .+.+..
T Consensus 192 ~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~ 271 (741)
T KOG3515|consen 192 FAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRV 271 (741)
T ss_pred ccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccc
Confidence 33444444444322 2 222 233578899999999977 67899999999997554322 112 233333
Q ss_pred eccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeee--ccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEe-----
Q psy17146 444 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----- 516 (1011)
Q Consensus 444 v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i----- 516 (1011)
-..++.-...|.+.|. ..+...+.+..++... ......+..|+...+.|...+..++..+.|+|+....
T Consensus 272 ~r~~~~~~~kc~a~n~----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~ 347 (741)
T KOG3515|consen 272 GRQDLQAQLKCKASNL----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQK 347 (741)
T ss_pred cccchhhhhhccccCc----cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccC
Confidence 3334455666999971 1222233333333322 2333447889999999999999888899999965432
Q ss_pred ---------------------eccCCCceEEEcCCCC--C--cccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEec
Q psy17146 517 ---------------------GVGSSDDYSVHNDVGK--S--EDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDG 570 (1011)
Q Consensus 517 ---------------------~~~~~~~y~~~n~~G~--~--~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g 570 (1011)
...+.+.|.|.+.... . +....+.+...|.|. .....+...+++.....-.+.+
T Consensus 348 ~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~ 427 (741)
T KOG3515|consen 348 ASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG 427 (741)
T ss_pred cccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccC
Confidence 1224566777544332 2 334455566666655 3445566667766666555556
Q ss_pred CCC-CeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-Ccee
Q psy17146 571 NPA-PEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQF 639 (1011)
Q Consensus 571 ~p~-p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~ 639 (1011)
+|. +.+.|.+++-++.. ...+...+.++...|.|.|.|.|+| ..+.....+.+.++..|.+... ....
T Consensus 428 ~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatn-s~gg~~~~~~~~~~~sp~~~~~~~~~~ 506 (741)
T KOG3515|consen 428 APAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATN-SPGGAQAYLLLGVHTSPHNHHLQDQVE 506 (741)
T ss_pred CCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeecc-CCCceeeEEeeccccCCcccccccccc
Confidence 654 58999998754432 2334455677899999999999999 5667777777889998988854 3444
Q ss_pred eecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 640 GIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
...|+.+.+.|.....|. +..+.|.+.|.+....... ..........+.+.+......-.|.|.|.+.|
T Consensus 507 ~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 576 (741)
T KOG3515|consen 507 GATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ----DAPQQQLMAHAQLLVSGNSSLQASETACVVDG 576 (741)
T ss_pred cCCCCcccceeeccccccchhhhcccccCCCCcccccc----cccccccCCccceeecccccccccceEEeecC
Confidence 667888999999988876 4468999988776431111 11111233457888888888888999999999
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=172.97 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=119.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC-----------CCeEEEEecCCcee------------------ecCCCcEEEeecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP-----------APEITWIHEDSDKV------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p-----------~p~v~W~k~~~~~~------------------~~~~~~L~I~~v~~~ 601 (1011)
...+.+.+|+++.|.|.+.+.| .+.+.|+|++.... ...+++|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4567889999999999997754 34899999874311 112469999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe-----cCCCCeEEEEECCeEecccCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS-----IPPPEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g-----~p~p~~v~W~~~g~~l~~~~~~ 676 (1011)
|+|.|+|.|.| ..+.....+.|.|..++ ....+.+|+.+.|.|.+.+ .|.| +|+|+|||+++. ...
T Consensus 109 DsG~Y~C~a~N-~~~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~--~~~ 179 (227)
T PHA02826 109 DEGIYICTISS-GNICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVL--YTD 179 (227)
T ss_pred HCEEEEEEEEE-CCcceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECC--CCC
Confidence 99999999999 56677788888885433 2345778999999999863 4567 999999999987 334
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++.+..+ .+.|.|.+++.+|+|.|+|.|+...+..
T Consensus 180 r~~~~~~------~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 180 RIQLRNN------NSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred CEEEeCC------CCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 5655432 3589999999999999999999876533
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=173.76 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=114.2
Q ss_pred cCCceeEEecCcEEEEEEEcC------------CCCeeEEeeCCeecCCcccCCCCcc---eEEeecC-CCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID------------KTGVLQWTKDDFALGPHRNLSGFDR---YAMIGSD-EEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~------------~~~~v~W~k~~~~l~~~~~~~~~~r---~~i~~~~-~~~~~~L~I~~ 96 (1011)
....+.+.+|++|+|.|.+.+ ....+.|+|++....... ...| ..+.... .....+|.|.+
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~---~~~~~~~~~i~~~~~~~r~~~L~I~~ 104 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRD---SGARTKIKKITHNEIGDRSENLWIGN 104 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEc---CCCccccccccccceecCCCeEEECC
Confidence 357789999999999999854 234899999975421100 0011 0000000 11234899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccC----CCCCcEEEEEeCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISAN----GKPPAEITWIDGT 172 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~----g~P~~~i~W~k~~ 172 (1011)
++.+|+|.|+|.+.|... .....+.|+|...+ ....+.+|+.+.|+|.+.. +.|.|+++|+|++
T Consensus 105 v~~~DsG~Y~C~a~N~~~----~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng 172 (227)
T PHA02826 105 VINIDEGIYICTISSGNI----CEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG 172 (227)
T ss_pred CChHHCEEEEEEEEECCc----ceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECC
Confidence 999999999999999532 23455667774321 1345678999999998543 3468999999999
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..+..+.++... .+ .++|.|.+++.+|+|.|+|.|......
T Consensus 173 ~~l~~~~r~~~~--~~------~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 173 NIVLYTDRIQLR--NN------NSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EECCCCCCEEEe--CC------CCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 888655443311 11 247999999999999999999986543
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=127.10 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=77.9
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+..|+.+.|.|.+.|.|.| .+.|+|+|++|. ...++.+.. ....+.|.|.++..+|+|.|+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~--~~~~~~~~~----~~~~s~L~I~~~~~~D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQ--EGEGIKIEN----TENSSKLTITEGQQEHCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEec--CCCcEEEEe----cCCeeEEEECCCChhhCEEEEE
Confidence 3444 4567889999999999999999999 999999999997 345666654 2335899999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecC
Q psy17146 709 SVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|.+|.+.+++.|.|.+
T Consensus 74 ~a~N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVD 92 (98)
T ss_pred EEEcCCCceeEEEEEEEec
Confidence 9999999999999999964
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-14 Score=121.72 Aligned_cols=96 Identities=31% Similarity=0.635 Sum_probs=87.4
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC-CEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH-FGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y 706 (1011)
.||.|.....+.+.+|++++|.|.+.+.|+|..|.|.+++..|..+...+|.+.+....++..++|.|.++...| .|.|
T Consensus 1 gpP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 489998888999999999999999999999988999999998877667899999887778899999999998877 6899
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy17146 707 NCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l 723 (1011)
.|.|.|.+|+++..++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999999887
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-07 Score=122.34 Aligned_cols=622 Identities=12% Similarity=0.137 Sum_probs=335.3
Q ss_pred ecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
..+....+..|.++.|.-...+. ...+.|.+++..-... ...+ .+ + .-+....|.|.....
T Consensus 1346 ~t~s~~~v~lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t---~st~----------qN----p-tHTY~~pGtYTVTLT 1407 (2740)
T TIGR00864 1346 LQAEKQFFALGDEAQFQACAEPEFNYRYEWDFGGEEAAPL---PAAG----------AE----V-TFIYNDPGCYLVTVA 1407 (2740)
T ss_pred ecccccccccCCeEEEEEecCCCCcEEEEEEeCCCCcccc---ccCC----------Cc----c-eEEcCCCceEEEEEE
Confidence 33333446678899998776543 3378888866321000 0000 00 0 012345677777654
Q ss_pred eCCCCCcceeeeEEEEEEEcCCCCCeeecCCee--eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 111 TGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL--YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 111 ~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~--~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
-.+.. +..+....++|..+.....+...... .+..+..+.+.-. ..+. ...+.|-.+++....+...
T Consensus 1408 VtN~~--gs~T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~-StGt-~~Sy~WdFGDGstst~qnp------- 1476 (2740)
T TIGR00864 1408 ASNNI--SAANDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAF-GRAR-NASYLWDFGDGGLLEGPEI------- 1476 (2740)
T ss_pred EECCC--cceeeeeEEEEecCCCcceeeecCCcccccccCcceEEeec-CCCC-ceEEEEECCCCCccCccce-------
Confidence 32211 22344556777655433333211110 0122334444432 3444 3478898876643211100
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEE--EeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCc
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQA--QNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH 266 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~ 266 (1011)
+ ..-...|.|+... .|..|.. +..+.+.|..+..-.........+-.+..+.++-....+. +
T Consensus 1477 --------t-----HtY~~~GtYtVtLTvtN~~Gss--t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~ 1540 (2740)
T TIGR00864 1477 --------L-----HAFNSPGDFNIRLAAANEVGKN--EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-D 1540 (2740)
T ss_pred --------E-----EEcCCCceEEEEEEEECCCCce--EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-c
Confidence 1 1234588888765 4666654 4455565654322111112223344566777775444443 3
Q ss_pred cEEEEEeCCcccCCccc--------cceEEEEeeecccCCcEEEEEEEEEee---------C--------------Cccc
Q psy17146 267 MKYRWYINDQPVPAAAS--------ATELYLTNITRHQHDSIVKCEVQVSVI---------G--------------SNRL 315 (1011)
Q Consensus 267 ~~i~W~~~~~~l~~~~~--------~~~l~i~~~~~~~~~~~~~c~~~~~~~---------~--------------~~~v 315 (1011)
..+.|.+.+.-...... .-..|...++..+..|.-.-...+.+. . ...+
T Consensus 1541 v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~ 1620 (2740)
T TIGR00864 1541 VRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYF 1620 (2740)
T ss_pred eeEEEEeCCCCccccCCCceEEeecCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCccccccccee
Confidence 78999886542221110 111222222222222211111111111 0 0223
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECC------eecCCCcCccEEEEeecccccCCcEEEE--EEEcCCccceeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYIND------QPVPAAASATELYLTNITRHQHDSIVKC--EVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g------~~l~~~~~~~~L~I~~~~~~~d~G~Y~C--~a~n~~g~~~~s~~l~V 387 (1011)
..+..+.|.-.+... .+.++.|..-+ ......+....+ ... +.|.|.. .|.|..|..+.+..+.|
T Consensus 1621 ~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~v-----t~~-~pG~Y~VtL~aSN~vG~~t~s~~i~v 1693 (2740)
T TIGR00864 1621 ETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGAKL-----NPL-EAGPCDIFLQAANLLGQATADCTIDF 1693 (2740)
T ss_pred ccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCceeEE-----ecC-CCceEEEEEEEeecccceeeEEEEEE
Confidence 344556665544433 44688996511 111111121222 222 6787765 45799999988888888
Q ss_pred Eecc-eEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEE--EcCCcce
Q psy17146 388 TYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEV 464 (1011)
Q Consensus 388 ~~~P-~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~--n~~~~~~ 464 (1011)
.++- .+........+..|+.+.|.-...+-....++|...+..........+ .-+-...|.|...+. |..+..
T Consensus 1694 ~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~---tHtf~~~G~y~VtVta~N~vss~- 1769 (2740)
T TIGR00864 1694 LEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM---SHSFPSAGLHLVTMKAFNELGSA- 1769 (2740)
T ss_pred EEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce---EEEccCCceEEEEEEEEcccccc-
Confidence 7632 344444455667799999998877777889999987653322222211 234566788877665 543322
Q ss_pred eeEEEEEEcCCCe---eeccC--cc-cccCCCeEEEEeEeeeCCCCCeeEEeeCCeE--------eeccCCCceE----E
Q psy17146 465 GAEATVYLKGRPT---IISHR--TQ-FGIPGDTARVECSAFSIPPPEKVTWSYRGEE--------IGVGSSDDYS----V 526 (1011)
Q Consensus 465 s~~~~v~v~~~p~---~~~~~--~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--------i~~~~~~~y~----~ 526 (1011)
...+.|.|..+-. +.... .. .+..|..+.+.-.+..+.. ..+.|..++.. ....+.|.|+ +
T Consensus 1770 ~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsn-Vsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~A 1848 (2740)
T TIGR00864 1770 NASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTN-VSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNA 1848 (2740)
T ss_pred ceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCe-eEEEEEeCCCCccccceeEEecCCCeEEEEEEEE
Confidence 3345555544332 11111 11 4456777777666554333 37888776543 2234567776 5
Q ss_pred EcCCCCCcccEEEEEEecc-eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-CCCcEEEeecCCCCCE
Q psy17146 527 HNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-NSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P-~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-~~~~L~I~~v~~~d~G 604 (1011)
.|.++....+..+.|+.++ .+........+..|+.++|.+.+...+.-.+.|...+...... .+.++. . ....-|
T Consensus 1849 sN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-H--sY~~~G 1925 (2740)
T TIGR00864 1849 SNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-H--SFPRVD 1925 (2740)
T ss_pred EcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE-e--ecCCCC
Confidence 8999999999999999887 4555566677889999999999988888899998886554433 222221 2 333445
Q ss_pred EE--EEEEEecCCCceeeEEEEEEcCC-CeeecCC--ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeE
Q psy17146 605 RY--YCKASVMGFPEVGAEATVYLKGR-PTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 679 (1011)
Q Consensus 605 ~Y--~C~a~n~~~~~~s~~~~l~V~~~-P~i~~~~--~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~ 679 (1011)
.| +..|.| ..+.....+.+.|.++ .-+.... ...+..|+..++...+...-+- .+.|+++-+.+.. ...+.
T Consensus 1926 ~Y~VtV~A~N-~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g--~~~~~ 2001 (2740)
T TIGR00864 1926 DHMVNLRAKN-EVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPV-AFAWTFDLHHLHG--DSLVI 2001 (2740)
T ss_pred cEEEEEEEEe-ccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCce-EEEEEeeecccCC--Cccee
Confidence 55 555667 4566777777777655 2221111 1126789999999988655444 7999976444331 11111
Q ss_pred EecCCcCccceeEEEEcCCCCCCCEEEEE--EEEcCCCCeEEEEEEEecCC
Q psy17146 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNC--SVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 680 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.. +..-+.+. ...|.|.. .|.|.+|+......+.|+..
T Consensus 2002 ~~------G~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 2002 HM------GKDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred ec------CCceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 11 11122222 35777765 67799999888888888765
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=117.16 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=71.4
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
...+.+|+++.|.|.+.|.|.| .++|+|+++++... ..++.+... ...+.|.|.++.++|+|.|+|.|.|.+|+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTET-EGRVRVESY----KDLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccC-CCeEEEEEc----CCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 4568899999999999999999 99999999999742 345666542 33579999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
+++++.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 999998875
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-14 Score=119.58 Aligned_cols=87 Identities=22% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
||.|. .+.+..+.+|+.++|.|.+.|.|.| .++|+|++.++.. ..++... .+.|.|.++..+|+|.|+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~--~~~~~~~--------~~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPA--TAEISMS--------GAVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCC--CCEEecC--------CCEEEECcCChhhCEEEE
Confidence 46666 4567889999999999999999999 9999999987752 2222221 258999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.|.+|+++..+.|.|+
T Consensus 70 C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 70 CEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEEEcCCCceEEEEEEEEC
Confidence 9999999999999999873
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=120.39 Aligned_cols=96 Identities=42% Similarity=0.777 Sum_probs=81.7
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC-CEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH-FGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y 706 (1011)
.||.|..+....+.+|+.+.|.|.+.|.|.|..|.|++++..+......++.+.......+..+.|.|.++..+| .|.|
T Consensus 1 ~pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 478888777788999999999999999999955999999999886555788887654445556899999999855 8999
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy17146 707 NCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l 723 (1011)
+|.|.|.+|.+++.+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999999998876
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=116.21 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=70.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|++ .++|+|++..+.. ...++.+..........++|.|.++..+|+|.|+|.|.|.+|.+++.+.
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~-~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINP-EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCC-CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999999998 9999999998864 2356666543223344688999999999999999999999999999999
Q ss_pred EEecC
Q psy17146 723 LKPQK 727 (1011)
Q Consensus 723 l~V~~ 727 (1011)
|.|.+
T Consensus 79 L~V~~ 83 (88)
T cd05735 79 LTVQE 83 (88)
T ss_pred EEEeC
Confidence 99964
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=112.58 Aligned_cols=75 Identities=28% Similarity=0.519 Sum_probs=63.6
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.|.|.+.|.|.| .|+|+|+|+.+.. ...++.+..+ +....+|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~-~~~r~~~~~~---~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQY-NTDRISLYQD---NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcC-CCCeEEEEEc---CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999999999 9999999999874 3356776543 222358999999999999999999999999999998875
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=117.08 Aligned_cols=84 Identities=26% Similarity=0.544 Sum_probs=71.0
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|++++|.|.+.|.|.| ++.|+|+|.++.. ..++.+... .+...+|.|.++..+|+|.|+|.|+|.+|
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALAL--SDHYNVKVE---QGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECcc--CCCEEEEEc---CCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 45678999999999999999999 9999999999873 445555432 22346899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
+++..+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9999988865
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=111.61 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.+.|.|.+.|.|.| +|+|+|++..+. ...++.+..+ ++|.|.+++.+|+|.|+|.|+|.+|+++.++.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~--~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLV--NNSRISIWDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecc--cCCCEEEcCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 6889999999999999 999999999876 4567776543 58999999999999999999999999999998
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|+|
T Consensus 71 l~~ 73 (73)
T cd05852 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=115.99 Aligned_cols=89 Identities=29% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
||.|. .+.+..+.+|+.+.|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~ 75 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIV--SSQRHQITS----TEYKSTFEISKVQMSDEGNYT 75 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECC--CCCcEEEEE----cCCeeEEEECCCCcccCEeEE
Confidence 56666 5567889999999999999999999 999999999876 345666543 233579999999999999999
Q ss_pred EEEEcCCCCeEEEEEEE
Q psy17146 708 CSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~ 724 (1011)
|.|+|.+|.++.++.|+
T Consensus 76 C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 76 VVVENSEGKQEAQFTLT 92 (92)
T ss_pred EEEEcCCCCEeEEEEeC
Confidence 99999999999988763
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=117.17 Aligned_cols=93 Identities=23% Similarity=0.435 Sum_probs=75.3
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEeccc---CCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGVG---SSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~~---~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.+|.|..+.+..+.+|+.++|.|.+.|.|.| .|.|+|+ |..+... ...++.+.. ....+.|.|.+++.+|
T Consensus 1 ~~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~----~~~~~~L~I~~v~~~D 75 (98)
T cd05870 1 VQPHIIQLKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKG----QHGESSLHIKDVKLSD 75 (98)
T ss_pred CCCEEEeeccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEee----cCCeeEEEEeeCCcCC
Confidence 3688888888999999999999999999999 9999994 4444321 234555542 2234689999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|.|.|.+|....++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999999999999988864
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=119.14 Aligned_cols=101 Identities=18% Similarity=0.343 Sum_probs=77.1
Q ss_pred EcCCCeeecCCc--eee---ecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-
Q psy17146 626 LKGRPTIISHRT--QFG---IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR- 699 (1011)
Q Consensus 626 V~~~P~i~~~~~--~~v---~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~- 699 (1011)
|..+|.|..++. ..+ ..|..++|.|.+.|.|.| .++|+|||..+.. ...++.+..........+.|+|.++.
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVPLDL-GNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEECCC-CCCeEEEEeeccCccceeEEEECcCCc
Confidence 456788875433 222 256899999999999999 9999999999864 23456544322222335789999997
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.+|.|.|+|.|.|.+|.++..+.|.|.+.
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEecCC
Confidence 69999999999999999999999998643
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-13 Score=111.92 Aligned_cols=74 Identities=28% Similarity=0.460 Sum_probs=64.1
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+|+++.|.|.+.|.|.| .|+|+|+|..+.. ..++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|+.+.++
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSV--DRRHLVLS-------SGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCC--CCCeEEcc-------CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 58999999999999999 9999999998863 33444433 25899999999999999999999999999999
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 8875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-13 Score=116.28 Aligned_cols=92 Identities=23% Similarity=0.406 Sum_probs=76.0
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|+|....+..+.+|+.++|.|.+.|.|.| .+.|++++..+.... ..++.+.. ....+.|.|.+++.+|+|.
T Consensus 2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~ 76 (96)
T cd05732 2 QPKITYLENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRG----HARVSSLTLKDVQLTDAGR 76 (96)
T ss_pred CccceecCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeC----CccEEEEEECcCCcCcCEE
Confidence 688887778889999999999999999999 999999987665321 23444432 2335799999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|.|.+|.++.++.|.|
T Consensus 77 Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 77 YDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred eEEEEEeCCCCcEEEEEEeC
Confidence 99999999999999998864
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-13 Score=109.96 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=63.1
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|.+.|.|.| .|+|+|++.++.. ...++.+..+ ......|.|.++..+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTH-NTDRVSMHQD---NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCC-CCCeEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999999999 9999999999874 3456666543 122347999999999999999999999999999998865
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=115.44 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=79.7
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|.|...|+++.+.+|+++.|.|.+.+ +.+.+.|+|++..+.. ..|+.+... .....|+|.+++.+|+|.|+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~------~~~~~~~~~--~~~s~L~I~~~~~~D~G~Yt 72 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE------GEGIKIENT--ENSSKLTITEGQQEHCGCYT 72 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC------CCcEEEEec--CCeeEEEECCCChhhCEEEE
Confidence 57889999999999999999999998 6779999999987742 235555433 23468999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.+.|.. +.....+.|+|.+.|.+|
T Consensus 73 c~a~N~~----G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 73 LEVENKL----GSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEEcCC----CceeEEEEEEEecCCCCC
Confidence 9999964 446778999999998776
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-13 Score=115.83 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=70.6
Q ss_pred CceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
....+.+|+.++|.|.+.| .|+| .+.|+|||.+|.. .....+.... ......++|.|..+..+|+|.|+|.|+|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTN--KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCC--CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECC
Confidence 4567889999999999999 7888 9999999999973 2333322210 01123588999999999999999999999
Q ss_pred CCCeEEEEEEEec
Q psy17146 714 YGSDSVEIMLKPQ 726 (1011)
Q Consensus 714 ~G~~~~~~~l~V~ 726 (1011)
.|.++..+.|.|+
T Consensus 88 ~G~~~~t~~L~V~ 100 (101)
T cd04975 88 DASKSLTFELYVN 100 (101)
T ss_pred CccEEEEEEEEEE
Confidence 9999999999874
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=114.54 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=72.5
Q ss_pred CCeeecCCcee-eecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 629 RPTIISHRTQF-GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 629 ~P~i~~~~~~~-v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+|+|...++.. +..|+.++|.|.+.|.|.| .++|++++..+.... ..++.+.. ....+.|.|.++..+|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~----~~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRS----HARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEc----CccEEEEEEecCccCcCE
Confidence 57777544444 4558999999999999999 999999998775321 23344333 223478999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|.+|.+++++.|.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCCCCeeEEEEEEC
Confidence 999999999999999998875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=113.08 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+. ...++.|.|.++..+|+|.|+|.|.| ..|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN-IKGKD 79 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEc-CCCce
Confidence 5888999999999999999999999999999999999975432 23456899999999999999999999 67888
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|+
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888874
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=114.27 Aligned_cols=90 Identities=31% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCeeecC---CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
||.|... .+..+..|+++.|.|.+.|.|.| .+.|+|+|..+... ..++....+ .+.|.|.+++.+|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~-~~~~~~~~~------~~~L~I~~v~~~D~G~ 72 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESG-EEKYSFNED------GSEMTILDVDKLDEAE 72 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCC-CCEEEEeCC------CCEEEECCCChhhCEE
Confidence 4666532 34568899999999999999999 99999999988642 234443321 3579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|+|.+|.++.++.|.|.
T Consensus 73 Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 73 YTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEEEcCCCeEEEEEEEEEE
Confidence 999999999999999999874
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=112.35 Aligned_cols=89 Identities=28% Similarity=0.540 Sum_probs=77.5
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+.+|++++|.|.+.|.|.| ++.|+++|..+.. ..++.+... +..++|.|.++..+|+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~--~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTS--SQRYQIESD----GGSSSLTIKNVTREDAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEES--SSSEEEEEE----TTEEEEEESSESGGGSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceee--eeeeeeecc----cceeEEccCCCChhhCEEEEE
Confidence 4555 4577889999999999999999999 9999999999984 566666552 357899999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.|.|..|..++++.|.|
T Consensus 74 ~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 74 VASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEC
Confidence 99999999999999875
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=108.19 Aligned_cols=74 Identities=28% Similarity=0.521 Sum_probs=63.2
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|+.++|.|.+.|.|.| +++|+|+|.++..... .++.+. .+.|.|.+++.+|+|.|+|.|.|.+|.....+
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVS--------SGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEee--------CCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 7899999999999999 9999999998874322 233332 26899999999999999999999999999999
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 9876
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=112.69 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCceeeecCCcEEEEEEEEecCC-CCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP-PEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
+....+..|++++|.|.+.|.|. | .++|++ +|..+.. ...++.+..+ ....++|.|.++..+|+|.|+|.|+|
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~l~~-~~~r~~v~~~---~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEKLTP-NQQRISVVRN---DDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcCccc-cCCeEEEEeC---CCCceEEEEeccChhhCEEEEEEEEc
Confidence 44556889999999999999995 7 999998 7876653 2335555432 23357999999999999999999999
Q ss_pred CC-CCeEEEEEEEe
Q psy17146 713 PY-GSDSVEIMLKP 725 (1011)
Q Consensus 713 ~~-G~~~~~~~l~V 725 (1011)
.+ |..++++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 97 89999998876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=108.09 Aligned_cols=75 Identities=24% Similarity=0.499 Sum_probs=62.7
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| +|+|+|+|+++............ ...|.|.+++.+|.|.|+|.|+|.+|...+++.
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~-------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVD-------GDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEec-------CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 6889999999999999 99999999998643222222211 247999999999999999999999999999999
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 986
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=104.90 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=56.9
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .++|+|||+++... ...+.|.|.++..+|+|.|+|.|+|.+|..++++.|.+
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~--------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGK--------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECccc--------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4799999999999 99999999998621 12369999999999999999999999998888887765
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=110.95 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=70.2
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+.+..+..|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~--~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLA--SENRIEVEA--------GDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECC--CCCeEEEeC--------CEEEEeeCCHHHCEEEEEEEECC
Confidence 4567789999999999999999999 999999999886 334454432 58999999999999999999999
Q ss_pred CCCeEEEEEEEe
Q psy17146 714 YGSDSVEIMLKP 725 (1011)
Q Consensus 714 ~G~~~~~~~l~V 725 (1011)
+|...+++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999999998875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=106.97 Aligned_cols=75 Identities=28% Similarity=0.500 Sum_probs=62.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .|.|+|+|..+.. ...++.+..+ .....+|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~-~~~r~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTY-NTDRISLYQD---NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCC-CCCcEEEEEc---CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4799999999999 9999999999874 3346665442 122457999999999999999999999999999998864
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=114.14 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=69.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
...+..|+.++|.|.+.|.|+| .+.|+|||++|... .+...... .......++|.|.++..+|+|.|+|.|+|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~--~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIEN--LTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNED 88 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCC--cceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCC
Confidence 5668889999999999999999 99999999998742 22222111 0011234799999999999999999999999
Q ss_pred CCeEEEEEEEec
Q psy17146 715 GSDSVEIMLKPQ 726 (1011)
Q Consensus 715 G~~~~~~~l~V~ 726 (1011)
|+.+.++.|.|+
T Consensus 89 g~~~~t~~l~V~ 100 (101)
T cd05859 89 AVKSYTFALQIQ 100 (101)
T ss_pred ceEEEEEEEEEE
Confidence 999999988874
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=105.75 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=60.9
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.+.|.|.+.|.|.| .++|+|+|..+. ...++.+..+ ..|.|.++..+|+|.|+|.|.|.+|+.++++.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~--~~~~~~~~~~-------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVI--PSDYFKIVKE-------HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECC--CCCCEEEEec-------CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999999 999999999886 3345555442 4688999999999999999999999999999886
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 5
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=106.34 Aligned_cols=74 Identities=27% Similarity=0.476 Sum_probs=63.5
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++.|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLK--LSGRVQIET----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcC--CCCeEEEEE----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 47899999999999 999999999985 345565543 23358999999999999999999999999999999887
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 5
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=109.88 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=69.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+.+..+..|+.+.|.|.+.|.|.| .++|+++|..+.. ........ ....+.|.|.++..+|.|.|+|.|+|.
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~--~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQ--TRTDTLET----TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccC--CccEEEEe----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 3445668999999999999999999 9999999998763 22222111 123578999999999999999999999
Q ss_pred CCCeEEEEEEEe
Q psy17146 714 YGSDSVEIMLKP 725 (1011)
Q Consensus 714 ~G~~~~~~~l~V 725 (1011)
+|++++++.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999999998864
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=110.17 Aligned_cols=85 Identities=27% Similarity=0.539 Sum_probs=70.7
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
|....+.+|+.+.|.|.+.|.|.| .+.|+++|..+.. ..++.+... .+..++|.|.+++.+|+|.|+|.|.|.+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~--~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIEL--SEHYSVKLE---QGKYASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCC--CCCEEEEEc---CCCEEEEEECCCChhhCEEEEEEEEeCC
Confidence 446678999999999999999999 8999999998863 345544332 2223689999999999999999999999
Q ss_pred CCeEEEEEEEe
Q psy17146 715 GSDSVEIMLKP 725 (1011)
Q Consensus 715 G~~~~~~~l~V 725 (1011)
|.+.+++.|.|
T Consensus 82 G~~~~~~~v~~ 92 (92)
T cd05891 82 GGETVDVTVSV 92 (92)
T ss_pred CceeeEEEEEC
Confidence 99999998875
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=108.42 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=64.8
Q ss_pred CcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
++++|.|.+.|+|.| ..++|++||.++.... ..++.+... ....++|.|.+++.+|+|.|+|.|.|.+|+.++++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV---KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe---cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 468999999999987 3689999999986532 334433221 12247999999999999999999999999999999
Q ss_pred EEEecC
Q psy17146 722 MLKPQK 727 (1011)
Q Consensus 722 ~l~V~~ 727 (1011)
.|.|.+
T Consensus 78 ~L~V~~ 83 (85)
T cd05854 78 TLVVRG 83 (85)
T ss_pred EEEEEC
Confidence 999864
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-12 Score=109.29 Aligned_cols=85 Identities=21% Similarity=0.422 Sum_probs=69.8
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.+. .+....+.+|+.++|.|.+.|.|.| +++|+|++..+.. ...+.. ..+.|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~--~~~~~~--------~~~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPS--SAEISM--------SGAVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCC--ccEEEE--------eCCEEEECCCCcccCEEEEE
Confidence 3343 4567778999999999999999999 9999999876642 222221 13689999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.|.|..|....++.|.|
T Consensus 71 ~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 71 EAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCcEEEEEEEEE
Confidence 99999999999999887
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-12 Score=105.65 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=64.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.+.|.|.+.|.|.| .++|+|++..+. ...++.+..+ ..|.|.+++.+|+|.|+|.|.|.+|+.+.++.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~--~~~~~~~~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLT--NSSRICIWPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEcc--cCCCEEECCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 6889999999999999 999999999886 3456665442 57999999999999999999999999999998
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=104.15 Aligned_cols=68 Identities=29% Similarity=0.575 Sum_probs=59.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
|.|.|.+.|.|.| .++|+|+|..+. ...++.+.. .+.|.|.++..+|+|.|+|.|.|.+|.++.++.|
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~--~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVT--ESGKFHISP-------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECC--CCCCEEECC-------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999 899999999886 345666544 2689999999999999999999999999998877
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-12 Score=105.11 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=62.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| .|.|+++|..+.......... ...+.|.|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRR-------VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEE-------ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 7889999999999999 999999999887432221111 12378999999999999999999999999999999
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 886
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=105.32 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=64.7
Q ss_pred CcEEEEEEEEecCC-CCeEEEEECCeEeccc-CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPP-PEKVTWSYRGEEIGVG-SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+++.|.|.+.++|. +..|.|+|||++|... ...+|.+... ....+.|.|.+++..|+|+|+|.|+|.+++.++++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 46899999998663 3389999999999742 3445555321 01236899999999999999999999999999999
Q ss_pred EEEecCC
Q psy17146 722 MLKPQKS 728 (1011)
Q Consensus 722 ~l~V~~~ 728 (1011)
.|.|+.+
T Consensus 78 ~L~V~~p 84 (85)
T cd05853 78 DLIVRGP 84 (85)
T ss_pred EEEEecC
Confidence 9998643
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=102.46 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=58.4
Q ss_pred EEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 647 ~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.|.|.+.|.|.| +|+|+|||++|..+......+.... .....+.|.|.++..+|+|.|+|+|+|.+|++++++.+.
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999999999 9999999999974221111221110 112357899999999999999999999999999988764
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=106.07 Aligned_cols=86 Identities=21% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCeeec---CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~---~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
.|.|.. +.++.+.+|+.++|.|.+.|. .| .|.|+|+|..+.. .++.+..+ ...|.|.+++++|+|.
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~---~~~~~~~~------~~~L~I~~v~~~D~G~ 69 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP---PRLQLSND------NRTLTFNNVTRSDTGH 69 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC---CCEEEeCC------CCEEEECcCChhhCEE
Confidence 366652 245689999999999999999 88 9999999998753 34444321 3589999999999999
Q ss_pred EEEEEEcCCCCe-EEEEEEEe
Q psy17146 706 YNCSVSNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~-~~~~~l~V 725 (1011)
|+|.|.|.+|.. +..+.|.|
T Consensus 70 Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 70 YQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEEcCCCCEEeeeEEEEe
Confidence 999999999974 55777776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.6e-12 Score=102.50 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=58.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|||+++... .++... ..+|.|.++..+|+|.|+|.|.|.+|..+.++.+.+
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~--~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK--NRTKKS--------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC--CEEEcC--------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4799999999999 99999999998742 333221 368999999999999999999999999888887765
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=113.23 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=88.4
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWI 169 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~ 169 (1011)
+|+|.+++.+|+|.|+|.+.+.. +..+..+.|+|..+|.. .+.. ......+|+.+.|.|.+.+.+|. ++|+|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~v~~~P~v-~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPP----HQAQQIIQLSVSEPPRV-RLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccC----cceeeEEEEEEecCCce-EEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 69999999999999999998753 33567788899876643 2222 23334478899999996655676 599999
Q ss_pred eCCceee------eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 170 DGTGTVM------SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 170 k~~~~l~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
|++.... .+.............+...+.|.|.....++.+.|+|.+.+....
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 9876421 122221122233346777789999888878889999999987553
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=108.26 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=65.6
Q ss_pred CeeeecCCCcEEEEEEccCC-CCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANG-KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+.+.+|+++.|.|. +.| .|+|.+.|+||+..+............. +.....++|.|..++.+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~-v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVE-VEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-SEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEE-EEecCCCCccEEEeCCeeCCCCcceeEEEecc-CcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 4678889999999999 778 8999999999998886543322211110 112235789999999999999999999999
Q ss_pred CCceeEEEEEE
Q psy17146 220 DRTYKVARLKL 230 (1011)
Q Consensus 220 g~~~~s~~v~v 230 (1011)
|....+..+.|
T Consensus 89 G~~~~t~~L~V 99 (101)
T cd04975 89 ASKSLTFELYV 99 (101)
T ss_pred ccEEEEEEEEE
Confidence 97744444443
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=104.09 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=67.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.+..+..|+++.|.|.+.|.|. .++|++ +|..+. ...++.+.. .+..+.|.|.++..+|+|.|+|.|+|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~--~~~r~~~~~----~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIV--SSQRVVVQK----EGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEec--CCCCEEEEe----CCCeeEEEEecCChHHCEEEEEEEEc
Confidence 345667899999999999999885 699998 566765 345676654 34457999999999999999999999
Q ss_pred CCCCe-EEEEEEEe
Q psy17146 713 PYGSD-SVEIMLKP 725 (1011)
Q Consensus 713 ~~G~~-~~~~~l~V 725 (1011)
..|.. .+++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99975 67777754
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=105.93 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++.... ...++.|.|.+++.+|+|.|+|.|.| ..|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN-IKGKD 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEE-CCCcE
Confidence 3566777889999999999999999999999999999876442 23568999999999999999999999 67788
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd04968 80 THQGRIYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888773
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=106.30 Aligned_cols=73 Identities=30% Similarity=0.499 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCCCeE-E
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSDS-V 719 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~-~ 719 (1011)
.|+.++|.|.+.|.|.| +|+|+|||..+......++.+.. +.|.|.++. .+|+|.|+|.|.|.+|+.. .
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~--------g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRYSLID--------GNLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceEEeeC--------CeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 47899999999999999 99999999998743333443322 579999885 6999999999999999773 4
Q ss_pred EEEE
Q psy17146 720 EIML 723 (1011)
Q Consensus 720 ~~~l 723 (1011)
.+.|
T Consensus 89 ~~~l 92 (94)
T cd05848 89 EALL 92 (94)
T ss_pred cEEE
Confidence 4444
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=102.06 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=60.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 724 (1011)
++|.|.+.|.|.| .|+|+|++.++......++.... .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~-------~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLR-------SGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcC-------CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 4799999999999 99999999988754455665543 2579999999999999999999999974 6777777
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 6
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=102.66 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 647 ~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.|.|.+.|.|.| +|+|+|||+++.........+.... ......+.|.|.++..+|+|.|+|.|+|.+|++++.+.|.
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999999999 9999999999975332111221110 1123457899999999999999999999999999988775
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-06 Score=105.03 Aligned_cols=567 Identities=11% Similarity=0.111 Sum_probs=306.4
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN 178 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~ 178 (1011)
....|.|+....-.+. .+..+....++|..+.....+.. ....+..+..+.++-....|.+ ..+.|..+++.....
T Consensus 1480 Y~~~GtYtVtLTvtN~--~Gsst~T~~VtV~~pV~~~tina-s~~~vpl~~sV~Fta~~s~Gs~-v~ysWdFGDg~ts~~ 1555 (2740)
T TIGR00864 1480 FNSPGDFNIRLAAANE--VGKNEATLNVAVKARVRGLTINA-SLTNVPLNGSVHFEAHLDAGDD-VRFSWILCDHCTPIF 1555 (2740)
T ss_pred cCCCceEEEEEEEECC--CCceEEEEEEEEeccccceEEcC-CCccccccceEEEEEEccCCCc-eeEEEEeCCCCcccc
Confidence 3467888887643221 12234556677776544333322 2333445667888865445554 489999876532110
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEE--EeCCCCceeEEEEEEEEEeCCc-eEEEec------------
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA--QNTADRTYKVARLKLLVKYAPK-VQVSVI------------ 243 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~n~~g~~~~s~~v~v~v~~~P~-~~~~~~------------ 243 (1011)
.+.. ... +-...|.|+..+ .|..|....+. .+.|..+-. ..+...
T Consensus 1556 --------~npt-----~~y-----TY~spGtYtVtLTvtN~~Gs~~~T~--~i~V~~~I~GlqI~~~~~~gg~~~~~~~ 1615 (2740)
T TIGR00864 1556 --------GGNT-----IFY-----TFRSVGTFNIIVTAENDVGAAQASI--FLFVLQEIEGLQILGETAEGGGGGVQEL 1615 (2740)
T ss_pred --------CCCc-----eEE-----eecCCceEEEEEEEecCCCccceeE--EEEEeecccceEEEeecccccCCccccc
Confidence 0000 001 223468887655 46777664443 444432211 111111
Q ss_pred CcceeecCceEEEEEEcccCCCccEEEEEeCCc------ccCCccc--------cceEEEEeeecccCCcE-EEEEEE--
Q psy17146 244 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ------PVPAAAS--------ATELYLTNITRHQHDSI-VKCEVQ-- 306 (1011)
Q Consensus 244 ~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~------~l~~~~~--------~~~l~i~~~~~~~~~~~-~~c~~~-- 306 (1011)
....+..+..+.|.-.+..+ ....+.|...+. ....... .+.+.+.-...+.-+.. -.+...
T Consensus 1616 ~~~~~~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ 1694 (2740)
T TIGR00864 1616 DGCYFETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGAKLNPLEAGPCDIFLQAANLLGQATADCTIDFL 1694 (2740)
T ss_pred ccceeccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCceeEEecCCCceEEEEEEEeecccceeeEEEEEEE
Confidence 01133345566666554443 347888866211 1111110 01111111111111110 000111
Q ss_pred -----EEee-CCcccccCCcEEEEEEeecCCCccEEEEEECCee-cCCCcCccEEEEeecccccCCcEEEEE--EEcCCc
Q psy17146 307 -----VSVI-GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP-VPAAASATELYLTNITRHQHDSIVKCE--VHNDVG 377 (1011)
Q Consensus 307 -----~~~~-~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~-l~~~~~~~~L~I~~~~~~~d~G~Y~C~--a~n~~g 377 (1011)
+.+. ....+..|+.+.|.-....... +.++|..++.. ... ....+ -.. . ...|.|... |.|..|
T Consensus 1695 epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~--s~p~~-tHt--f-~~~G~y~VtVta~N~vs 1767 (2740)
T TIGR00864 1695 EPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLET--SEPFM-SHS--F-PSAGLHLVTMKAFNELG 1767 (2740)
T ss_pred EEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCccc--CCCce-EEE--c-cCCceEEEEEEEEcccc
Confidence 1111 3456677889998876565554 59999866532 111 11100 111 1 146888765 568998
Q ss_pred cceeeEEEEEEecce---EeeC-CCce-EecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEE
Q psy17146 378 KSEDSETLDVTYGPR---FRAR-PYSV-QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRY 452 (1011)
Q Consensus 378 ~~~~s~~l~V~~~P~---~~~~-p~~~-~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y 452 (1011)
....+..+.|..+.. |... +... .+..|..+.|.-.+.---...+.|..++.....+ .=...+..++|.|
T Consensus 1768 s~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g-----k~v~~Tf~~aG~y 1842 (2740)
T TIGR00864 1768 SANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG-----KHACMTFPDAGTF 1842 (2740)
T ss_pred ccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc-----ceeEEecCCCeEE
Confidence 888888888877543 2221 1111 4556888888877643334478888875432211 1112567899999
Q ss_pred EEEEE--EcCCcceeeEEEEEEcCCCee--eccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCe-Eeec--c------
Q psy17146 453 YCKAS--VMGFPEVGAEATVYLKGRPTI--ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE-EIGV--G------ 519 (1011)
Q Consensus 453 ~C~a~--n~~~~~~s~~~~v~v~~~p~~--~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-~i~~--~------ 519 (1011)
+.... |.. ...+....+.|..+..- ..........|+.++|.+....+.. .++.|...+. .... +
T Consensus 1843 tV~L~AsN~v-s~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~-Vtf~w~fGdgs~~~~t~~~t~~Hs 1920 (2740)
T TIGR00864 1843 AIRLNASNAV-SGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSA-VNFRLQIGGAAPEVLQPGPRFSHS 1920 (2740)
T ss_pred EEEEEEEccc-CcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCc-eEEEEEeCCCCceeecCCCeEEee
Confidence 87765 533 22334444555555433 3334557778999999999988884 5899987643 2211 1
Q ss_pred --CCCceE----EEcCCCCCcccEEEEEEecceee-cCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEec-----CCcee
Q psy17146 520 --SSDDYS----VHNDVGKSEDSETLDVTYGPRFR-ARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHE-----DSDKV 586 (1011)
Q Consensus 520 --~~~~y~----~~n~~G~~~~~~~l~V~~~P~~~-~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-----~~~~~ 586 (1011)
..|.|. +.|.++.......+.|..+-.-. .... ...+..|+..+|.-.+....+-.+.|+.+ |....
T Consensus 1921 Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~ 2000 (2740)
T TIGR00864 1921 FPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLV 2000 (2740)
T ss_pred cCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcce
Confidence 234553 68999998888888776552221 1111 11268899999999886666667899855 33333
Q ss_pred ecCCCcEEEeecCCCCCEEEEEEE--EecCCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEE
Q psy17146 587 VGNSPNLTLLMTSDDLAGRYYCKA--SVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVT 662 (1011)
Q Consensus 587 ~~~~~~L~I~~v~~~d~G~Y~C~a--~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~ 662 (1011)
...+...+. .....|.|...+ .| ..+..+....+.|+.+.... .........+..++|.|.+...+..+.+.
T Consensus 2001 ~~~G~~vty---~~~~~G~~~I~v~A~N-~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~ 2076 (2740)
T TIGR00864 2001 IHMGKDVSY---TAEAAGLLEIQLGAFN-ALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACH 2076 (2740)
T ss_pred eecCCceEE---ccCCCcEEEEEEEEEc-ccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEE
Confidence 333333333 235789997665 46 45666667777777665432 21233455688999999987666545899
Q ss_pred EEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE--EEEcCCCCeEEEEEEEec
Q psy17146 663 WSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC--SVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~ 726 (1011)
|-+. |......+..+.. - .-...|.|.. .|.|......+.++|.|.
T Consensus 2077 WDFGDGt~~~~T~~~~~s-------------H-----tY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~ 2125 (2740)
T TIGR00864 2077 WDFGDGSAGQDTDEPRAE-------------H-----EYLHPGDYRVQVNASNLVSFFSAHAEINVQ 2125 (2740)
T ss_pred EEecCCCCccccCCceeE-------------E-----EecCCccEEEEEEEEcceeeeeeEEEEEEE
Confidence 9886 4443321111111 1 1123477776 467998876666666664
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=102.89 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|++++|.|.+.|.|.| .|+|++++..+. ...++.+.. .+..+.|.|.++..+|+|.|+|.|.|.+|.......
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVP--DSARVSITS----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECC--CCCCEEEEE----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 7889999999999999 999999998876 345565544 233578999999999999999999999998765554
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
+
T Consensus 74 ~ 74 (78)
T cd05743 74 G 74 (78)
T ss_pred E
Confidence 4
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=102.75 Aligned_cols=73 Identities=29% Similarity=0.527 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l 723 (1011)
++|.|.+.|.|.| .|+|+|+|.++... ..++.+... ...|.|.++..+|+|.|.|.|.|.+|.. ++.++|
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~-~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDG-QGNYSVSSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCC-CccEEEeCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999999999 99999999998642 334444332 3589999999999999999999999976 456666
Q ss_pred Eec
Q psy17146 724 KPQ 726 (1011)
Q Consensus 724 ~V~ 726 (1011)
.|.
T Consensus 73 ~v~ 75 (77)
T cd05760 73 SII 75 (77)
T ss_pred EEe
Confidence 553
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=106.03 Aligned_cols=89 Identities=30% Similarity=0.453 Sum_probs=73.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+.. ..++.+.... +.++|+|.+++.+|+|.|+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~------~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS------SQRYQIESDG--GSSSLTIKNVTREDAGTYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES------SSSEEEEEET--TEEEEEESSESGGGSEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee------eeeeeeeccc--ceeEEccCCCChhhCEEEE
Confidence 67999999999999999999999997 6779999999987743 4566666554 7789999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.+.. +..+..+.|+|
T Consensus 73 C~~~n~~----g~~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSS----GEATASVNLTV 90 (90)
T ss_dssp EEEEETT----EEEEEEEEEEE
T ss_pred EEEEECC----CEEEEEEEEEC
Confidence 9999963 34555566654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=101.48 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|++..+... +..... ...+|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~---~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPN---RTKKLN------NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCC---ceeEEc------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999 99999999877531 222211 2469999999999999999999999999999999887
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=103.15 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=65.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|+.++|.|.+.+. .+ .+.|+|||.++.. ..++.+.. ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~--~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGE--NNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCC--CceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCC
Confidence 45668899999999999996 56 7999999999863 34555532 4799999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
+....+.|.|
T Consensus 70 ~~~~~~~v~V 79 (79)
T cd04973 70 SDTTYFSVNV 79 (79)
T ss_pred cccEEEEEeC
Confidence 9888887764
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=105.00 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=66.0
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..+.+|+.+.|.|.+.|.|.| .++|+|+|..+..... ..+.+.. ....|.|.++..+|+|.|+|.|.|.+|+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~------~~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeC------CceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 347789999999999999999 9999999999874221 1122211 1357999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
.+.++.|.|
T Consensus 77 ~~~~~~l~v 85 (85)
T cd05857 77 INHTYHLDV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999998875
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=99.29 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=56.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| .|+|+|+|.++.. ..++.. ....|.|.++. |+|.|+|.|.|.+|..++++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~--~~~~~~--------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTK--EDEMPV--------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCC--ccceec--------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 6889999999999999 9999999998753 223222 12579999974 799999999999999988887
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
|
T Consensus 68 l 68 (69)
T cd05739 68 V 68 (69)
T ss_pred E
Confidence 6
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=113.01 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=86.5
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
.+|+|.+++.+|+|.|+|.+.+ ..+.....+.|.|..+|.+... .......|+.++|.|.+.|. |.+.+|+|+++|.
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVST-PPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEc-cCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 3699999999999999999998 5677888999999999998743 33334478999999999997 5435899999986
Q ss_pred Eecc----cCCC---CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 669 EIGV----GSSD---DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 669 ~l~~----~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.... .... ......+ ......+.|.|......+...|+|.|.+..-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d-gt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQD-GTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCC-CCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 5221 0010 0111110 0011246788876666667799999987654
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=101.75 Aligned_cols=75 Identities=29% Similarity=0.466 Sum_probs=63.7
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|++..+......++.+..+ ...|.|.++..+|.|.|+|.|.|.+|.++..+.|.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~------~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIAN------GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCC------CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4699999999999 999999999987544445554332 357999999999999999999999999999999988
Q ss_pred cC
Q psy17146 726 QK 727 (1011)
Q Consensus 726 ~~ 727 (1011)
++
T Consensus 74 ~~ 75 (76)
T cd05736 74 ED 75 (76)
T ss_pred Ec
Confidence 64
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=99.48 Aligned_cols=68 Identities=21% Similarity=0.409 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .++|+|||+++.. ..+ +.. ...|.|.++..+|+|.|+|.|.|.+|..+...++.+
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~--~~~--~~~-------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVL--NHT--FKR-------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCC--CCE--Ecc-------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4799999999999 9999999999863 222 211 257999999999999999999999998877776654
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=103.82 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=62.2
Q ss_pred cCCceeeec---CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEE
Q psy17146 634 SHRTQFGIP---GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCS 709 (1011)
Q Consensus 634 ~~~~~~v~~---G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~ 709 (1011)
.+.+..+.+ |++++|.|.+.|.|.| .|+|++||..+......++.+.. +.|.|.++. ..|+|.|+|.
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~--------g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVA--------GNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEEC--------CeEEEccCCccCcCEEEEEE
Confidence 344444434 4689999999999999 99999999998754445555532 579998865 5999999999
Q ss_pred EEcCCCCeE-EEEEE
Q psy17146 710 VSNPYGSDS-VEIML 723 (1011)
Q Consensus 710 a~N~~G~~~-~~~~l 723 (1011)
|+|.+|+.. ..+.|
T Consensus 78 A~N~~G~~~s~~a~l 92 (94)
T cd05850 78 AINRCGTVVSREANL 92 (94)
T ss_pred EEcCcCcEEEEEEEE
Confidence 999999764 45555
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=97.66 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=58.9
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
++|.|.+.|.|.| .+.|||||+++........|.|.++..+ |+|.|+|.|+|..|..+.+..+.|.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~~~~~L~i~~v~~~-D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGKHSQHSLQIKDVTEA-SAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECcccCCcCEEEECCCCHH-HCEEEEEEEEECCccEEEEEEEEEE
Confidence 4799999999998 9999999999976667789999999998 9999999999999988777777664
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=107.18 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=67.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEE--cCCCCCC
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLII--RESRHDH 702 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I--~~~~~~d 702 (1011)
||.|. .+.+..+.+|+.++|.|.+.|.|.| .+.|+|+|..+.... ..+..+.. .+....+.| ..+..+|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~D 75 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLP----SGSLFFLRVVHGRKGRSD 75 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEec----CCcEEEEEeeccCCCcCc
Confidence 46666 4567889999999999999999999 999999999987521 11222221 222223333 3346899
Q ss_pred CEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
+|.|+|.|+|.+|. .+..+.|.|
T Consensus 76 ~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 76 EGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CEEEEEEEEccccceecceEEEEe
Confidence 99999999999998 677877765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=105.62 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=64.8
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|++++|.|.+.|.|.| .+.|+|+|..+.. ....++.+.. .+.|+|.+++.+|+|.|+|.|.|.+|+
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-------TGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECC-------CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 7889999999999999 9999999875421 1234555543 257999999999999999999999999
Q ss_pred eEEEEEEEecCC
Q psy17146 717 DSVEIMLKPQKS 728 (1011)
Q Consensus 717 ~~~~~~l~V~~~ 728 (1011)
....+.|.|.+.
T Consensus 73 ~~~~~~l~V~~~ 84 (90)
T cd05726 73 ILTKAYLEVTDV 84 (90)
T ss_pred eEEEEEEEEeec
Confidence 999999999754
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=99.62 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=59.0
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .+.|+|++..+. ..++.+.. ...|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELP---KGRAEILD-------DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCC---CCcEEEee-------CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4799999999999 999999987764 34555543 258999999999999999999999999999988865
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=104.87 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECC----eEecccCCCCeEEecCC---cCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRG----EEIGVGSSDDYSVLEDP---LKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g----~~l~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|.|.| +|+|+|++ ..+.............. ...+....|.|.++..+|+|.|+|.|.|.+|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999999999 99999964 33332122222222110 0112245899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
...+++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999987
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=104.87 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=66.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC-----CCCCCEEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES-----RHDHFGVYNC 708 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~-----~~~d~G~Y~C 708 (1011)
.|.+..+.+|+++.|.|.+.|.|.| .++|+|||..+......++.+..+ +.|.|.++ .++|.|.|+|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~-------~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPN-------GSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccC-------CeEEEeeeeccCCCCCcCEEEEE
Confidence 4556778899999999999999999 999999999987543333444332 45666665 6899999999
Q ss_pred EEEcC-CCCe-EEEEEEEe
Q psy17146 709 SVSNP-YGSD-SVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~-~G~~-~~~~~l~V 725 (1011)
.|.|. .|.. +..+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9976 66777754
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=104.07 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=63.3
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.+.+|+.+.|.|. +.|.|.|++.|+|++..+....++......+. .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~v~v~~G~~v~L~C~-v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 9 DVVTIMEGKTLNLTCT-VFGDPDPEVSWLKNDQALALSDHYNVKVEQGK-----YASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ceEEEeCCCcEEEEEE-EEecCCCeEEEEECCEECccCCCEEEEEcCCC-----EEEEEEccCChhhCEEEEEEEEECCC
Confidence 3677889999999999 78999999999999988766555443322221 25799999999999999999999999
Q ss_pred CceeE
Q psy17146 221 RTYKV 225 (1011)
Q Consensus 221 ~~~~s 225 (1011)
.....
T Consensus 83 ~~~~~ 87 (92)
T cd05737 83 GETVD 87 (92)
T ss_pred cceEE
Confidence 87433
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=100.41 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=59.1
Q ss_pred CCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 558 RGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+|+.+.|.|.+.|.|.|.++|+|++..+ .....++|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN-IVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEe-CCCceeEEEEEeC
Confidence 6899999999999999999999998543 234567999999999999999999999 6788888888765
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=99.52 Aligned_cols=73 Identities=27% Similarity=0.450 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|+.+.|.|.+.|.|.| .+.|++ ++..+. ...++.+.. .++|.|.++..+|+|.|+|.|.|..|.+++.+
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~--~~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLIS--NSSRTLVYD-------NGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEec--CCCeEEEec-------CCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 7889999999999999 999997 566654 333444433 25899999999999999999999999999998
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 71 ~l~v 74 (74)
T cd05764 71 ELHI 74 (74)
T ss_pred EEEC
Confidence 8865
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=102.73 Aligned_cols=81 Identities=26% Similarity=0.512 Sum_probs=66.1
Q ss_pred CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+.+..+.+|+++.|.|.+ .|.|.| .+.|+|+|..+... ..++.+.. .+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~-~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLD-NERVRIVD-------DGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCC-CCCEEEcc-------CCEEEEeECCcccCEEEEEEEEec
Confidence 456678899999999998 789999 99999999998752 34455433 258999999999999999999999
Q ss_pred CCCe-EEEEEEE
Q psy17146 714 YGSD-SVEIMLK 724 (1011)
Q Consensus 714 ~G~~-~~~~~l~ 724 (1011)
.|.. +..+.|.
T Consensus 74 ~G~~~s~~~~l~ 85 (86)
T cd05724 74 VGERESAAARLS 85 (86)
T ss_pred cCceeeeeEEEE
Confidence 9975 4555554
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=106.36 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=65.7
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
...+..|+.+.|.|. +.|+|+|+++|+||+..+..+.........+.......++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVE-VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEE-EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 455677999999999 8899999999999999887644322111111111223468999999999999999999999998
Q ss_pred ceeEEEEEEE
Q psy17146 222 TYKVARLKLL 231 (1011)
Q Consensus 222 ~~~s~~v~v~ 231 (1011)
...+..+.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 7555555443
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=101.65 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=64.0
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.+.+.+|+.+.|.|. +.|.|.|.++|+|++..+... .++......+ .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~-~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~------~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVP-ISGEPAPTVTWSRGDKAFTETEGRVRVESYKD------LSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEee-EeecCCCeEEEEECCEECccCCCeEEEEEcCC------eEEEEECCCccCcCEEEEEEEEeCCC
Confidence 567889999999999 789999999999999887543 2343222222 36899999999999999999999999
Q ss_pred CceeEEEEEEE
Q psy17146 221 RTYKVARLKLL 231 (1011)
Q Consensus 221 ~~~~s~~v~v~ 231 (1011)
.. ++.+.|.
T Consensus 77 ~~--~~~~~l~ 85 (86)
T cd05894 77 ED--HASLFVK 85 (86)
T ss_pred cE--EEEEEEE
Confidence 86 4444443
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=100.55 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=58.8
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecc-cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGV-GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++|.|.+.|.|.| +|+|+|+|..... ....++.+... .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPE------DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecC------CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 4799999999999 9999999875322 22334444321 25899999999999999999999999999999988
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 6
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=102.30 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=68.4
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.| ..|.....
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~~G~~~~~ 80 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN-KHGTIYAS 80 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEEC-CCCeEEEE
Confidence 5667889999999999999999999999999999986432 23457899999999999999999999 67888888
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 87765
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-11 Score=102.94 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=61.4
Q ss_pred CCcEEEEEEEEecCCCCeEEEEEC----CeEecccCCCCeEEecCC---cCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYR----GEEIGVGSSDDYSVLEDP---LKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~----g~~l~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|.|.| .|+|+|+ |..+.........+.... ......+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6889999999999999 9999984 555542222222222110 0112246899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999999876
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=99.29 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=57.1
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee-ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|+|. +.|.|.|.++|+|++..+.. +.++.......+ ..+|.|.+++.+|+|.|+|.|.|..|.+..++.+.
T Consensus 1 v~l~C~-v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g-----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQ-ISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG-----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEE-EEecCCCeEEEEECCEECcCCCCeEEEEEcCCC-----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 479999 78999999999999888764 344443333333 14799999999999999999999999886555544
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=101.13 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=63.3
Q ss_pred CcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
++++|.|.+.|.|.| +.+.|+++|.++.... ..++..... ....+.|.|.+++.+|+|.|+|.|.|.+|..++++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG---KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec---ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 468999999999986 2579999999987432 222322111 12247899999999999999999999999999999
Q ss_pred EEEecC
Q psy17146 722 MLKPQK 727 (1011)
Q Consensus 722 ~l~V~~ 727 (1011)
.|.|..
T Consensus 78 ~l~V~~ 83 (85)
T cd04970 78 DLIVRG 83 (85)
T ss_pred EEEEEC
Confidence 999864
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=104.71 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=65.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e-----------ee---cCCCcEEEeecCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K-----------VV---GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
+|.|.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+... + .. ...++|+|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 466654 6789999999999999999999999999995321 1 11 12358999999999999999
Q ss_pred EEEEecCCCceeeEEEEEE
Q psy17146 608 CKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V 626 (1011)
|.|.| ..|....++.|.|
T Consensus 81 C~A~N-~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAAS-RIGGHQKSMYLDI 98 (98)
T ss_pred EEEec-cCCcceeEEEEeC
Confidence 99999 6777777777754
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=101.14 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=65.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+.+..+..|+++.|.|.+.|.| + .++|++ +|..+.. ..++.+..+ ....++|+|.+++.+|+|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~--~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT--QQQISVVQN---DDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc--CCCEEEEeC---CCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 4556789999999999999996 5 899998 6766653 334444332 344679999999999999999999999
Q ss_pred CC-CeEEEEEEEe
Q psy17146 714 YG-SDSVEIMLKP 725 (1011)
Q Consensus 714 ~G-~~~~~~~l~V 725 (1011)
+| ..++++.|.|
T Consensus 80 ~g~~~~~sv~l~~ 92 (92)
T cd04977 80 KGTESEATVNLKI 92 (92)
T ss_pred CCCcceeEEEEEC
Confidence 76 5677777754
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-11 Score=101.64 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=63.8
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
....|+.++|.|.+.|.|.| .+.|+|+|..+..... ... ......|.|.++..+|+|.|+|.|.|..|..+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~--~~~------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI--GES------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc--cee------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 45679999999999999999 8999999988763211 111 11246899999999999999999999999999
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
+.+.|.|
T Consensus 76 ~~~~v~v 82 (82)
T cd05856 76 ATYKVDV 82 (82)
T ss_pred EEEEEeC
Confidence 8888764
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=101.69 Aligned_cols=71 Identities=32% Similarity=0.529 Sum_probs=57.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCCCe-EEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSD-SVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~-~~~ 720 (1011)
|..+.|.|.+.|.|.| .|+|+|++..+.. ...++.+. .+.|.|.++. .+|+|.|+|.|+|.+|.. +..
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~-~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 88 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDL-TNDRYSMV--------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSRE 88 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccC-CCCeEEEE--------CCEEEECcCCcCCCCEEEEEEEEeCcceEEEcc
Confidence 4579999999999999 9999999998853 23455443 2689999985 689999999999999976 345
Q ss_pred EEE
Q psy17146 721 IML 723 (1011)
Q Consensus 721 ~~l 723 (1011)
++|
T Consensus 89 a~l 91 (93)
T cd05849 89 ATL 91 (93)
T ss_pred EEE
Confidence 554
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-11 Score=102.58 Aligned_cols=79 Identities=27% Similarity=0.378 Sum_probs=63.8
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCC-CeEEEEe-cCCceee--------cC---CCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIH-EDSDKVV--------GN---SPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k-~~~~~~~--------~~---~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
...|.+..+.+|++++|.|.+.|.|. |.++|++ ++..+.. .+ .++|+|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 34567778999999999999999995 7999998 5543211 11 2589999999999999999999954
Q ss_pred CCceeeEEEEEE
Q psy17146 615 FPEVGAEATVYL 626 (1011)
Q Consensus 615 ~~~~s~~~~l~V 626 (1011)
.+..++++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 588888888876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-11 Score=103.02 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=66.1
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
+..+|++..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .....|+|.++..+|.|.|+|.|.| ..|+
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N-~~G~ 81 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN-PVGQ 81 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC-CCCc
Confidence 34567778899999999999999999999999999854321 2235799999999999999999999 6788
Q ss_pred eeeEEEEEE
Q psy17146 618 VGAEATVYL 626 (1011)
Q Consensus 618 ~s~~~~l~V 626 (1011)
....+.|.|
T Consensus 82 ~~~~~~L~v 90 (90)
T cd04972 82 ANVSVQVTV 90 (90)
T ss_pred eeEEEEEeC
Confidence 888887764
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-11 Score=104.04 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=67.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------------cCCCcEEEeecCCCCCEEEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------------GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------------~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.|+|...+....+..|+.++|.|.+.|.|.|.++|++++..+.. ...+.|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 57787777777777799999999999999999999998743321 1125799999999999999999
Q ss_pred EEecCCCceeeEEEEEE
Q psy17146 610 ASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V 626 (1011)
|.| ..|..+..+.|.|
T Consensus 82 A~N-~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASN-TIGQDSQSMYLEV 97 (97)
T ss_pred Eec-CCCCeeEEEEEEC
Confidence 999 6888888888765
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=106.42 Aligned_cols=89 Identities=22% Similarity=0.417 Sum_probs=71.4
Q ss_pred EEecceeecCCceEEE----cCCCcEEEEEEEecCCCCeEEEEecCCceeec--------------CCCcEEEeecC-CC
Q psy17146 541 VTYGPRFRARPYSVQV----DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------NSPNLTLLMTS-DD 601 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v----~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------~~~~L~I~~v~-~~ 601 (1011)
|.++|.|...|....+ ..|..++|.|.+.|.|.+.+.|+|++..+... ..+.|+|.++. .+
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 4568888877763222 35689999999999999999999998543211 12579999997 69
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.|.|+|.|.| ..|.....+.|.|..+|
T Consensus 81 D~G~Y~C~A~N-~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHN-SLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEe-CCccCcEEEEEEecCCC
Confidence 99999999999 78889999999998877
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-11 Score=97.30 Aligned_cols=70 Identities=29% Similarity=0.493 Sum_probs=58.3
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .+.|+|++..+.. .+.... .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~---~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPA---DRTKFE------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCC---CceeEe------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999 8999999987752 122221 12368999999999999999999999999999999887
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.1e-11 Score=103.32 Aligned_cols=84 Identities=27% Similarity=0.432 Sum_probs=67.6
Q ss_pred cceeecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 544 GPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 544 ~P~~~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
||.|...+ .+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+. ....+.|+|.++..+|+|.|+|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N- 79 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAEN- 79 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEc-
Confidence 35555443 45678999999999999999999999999874332 12345799999999999999999999
Q ss_pred CCCceeeEEEEEEcC
Q psy17146 614 GFPEVGAEATVYLKG 628 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~~ 628 (1011)
..|.....+.|.|..
T Consensus 80 ~~G~~~~~~~L~V~~ 94 (95)
T cd05730 80 KAGEQEAEIHLKVFA 94 (95)
T ss_pred CCCeEEEEEEEEEEe
Confidence 677888888888753
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-11 Score=97.13 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|+++|+|++..+..+.++.. .. .++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 G~~~~l~C~-~~g~P~p~v~W~k~~~~l~~~~r~~~--~~-------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECK-PKAAPKPKFSWSKGTELLVNNSRISI--WD-------DGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEe-cceeCCCEEEEEeCCEecccCCCEEE--cC-------CCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 678999999 77999999999999877655544432 11 247999999999999999999999998865555
Q ss_pred EE
Q psy17146 228 LK 229 (1011)
Q Consensus 228 v~ 229 (1011)
++
T Consensus 71 l~ 72 (73)
T cd05852 71 LS 72 (73)
T ss_pred EE
Confidence 43
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=99.20 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=64.5
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
|+.+.|.|. +.|.|++.++|+|++..+... .++.......+. ...++|.|.++..+|+|.|+|.|.|..|.. +.
T Consensus 1 g~~~~l~C~-~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~--~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~--~~ 75 (88)
T cd05735 1 GQKKEMSCT-AHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGD--EVISTLQILPTVREDSGFFSCHAINSYGED--RG 75 (88)
T ss_pred CCeEEEEEE-EECCCCCEEEEeeCCEECCCCCCcEEEEEecCCC--cEEEEEEECCCCcccCEEEEEEEEcCCCcc--eE
Confidence 788999999 778999999999998776443 344433322222 224689999999999999999999999987 56
Q ss_pred EEEEEEEeCCc
Q psy17146 227 RLKLLVKYAPK 237 (1011)
Q Consensus 227 ~v~v~v~~~P~ 237 (1011)
.+.|.|..+|.
T Consensus 76 ~~~L~V~~~P~ 86 (88)
T cd05735 76 IIQLTVQEPPD 86 (88)
T ss_pred EEEEEEeCCCC
Confidence 66677766553
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=101.23 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=64.2
Q ss_pred ecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
..+..+.+.+|+.+.|.|. +.|+|.|.+.|+|++..+..+.++....... .++|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~p~~~~~~~G~~~~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 8 TKPRSLTVSEGESARFSCD-VDGEPAPTVTWMREGQIIVSSQRHQITSTEY------KSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred ccCccEEEeCCCcEEEEEE-EeecCCCEEEEEECCEECCCCCcEEEEEcCC------eeEEEECCCCcccCEeEEEEEEc
Confidence 3445788899999999999 8899999999999988776554544332211 36899999999999999999999
Q ss_pred CCCCcee
Q psy17146 218 TADRTYK 224 (1011)
Q Consensus 218 ~~g~~~~ 224 (1011)
..|....
T Consensus 81 ~~G~~~~ 87 (92)
T cd05747 81 SEGKQEA 87 (92)
T ss_pred CCCCEeE
Confidence 9997633
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=99.40 Aligned_cols=72 Identities=24% Similarity=0.483 Sum_probs=62.1
Q ss_pred CcEEEEEEeecCCCc-cEEEEEECCeecCCCc------------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 319 TDVRLYCKAEANPSH-MKYRWYINDQPVPAAA------------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 319 ~~v~l~C~~~~~p~~-~~i~W~k~g~~l~~~~------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
+.++|.|.+.+.|.| +.++|+|||..+.... ....|.|.+++.. |+|.|+|.|.|..|..+.++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS-HAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChh-hCeEEEEEEecCCCCEEEEEEE
Confidence 468999999999865 5799999998875421 2358999999998 9999999999999999999999
Q ss_pred EEEecc
Q psy17146 386 DVTYGP 391 (1011)
Q Consensus 386 ~V~~~P 391 (1011)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998766
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-11 Score=101.91 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=65.2
Q ss_pred CceeeecCCcEEEEEEEEe-----cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFS-----IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-----~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
....+.+|+++.|.|.+.| .|.| .|+|+|+|..+.........+... ...|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQ------KDLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeec------CCeEEEccCCcccCeEEEEEE
Confidence 3556789999999999999 6888 899999997654321111222111 268999999999999999999
Q ss_pred EcCCCCeEEEEEEEe
Q psy17146 711 SNPYGSDSVEIMLKP 725 (1011)
Q Consensus 711 ~N~~G~~~~~~~l~V 725 (1011)
+|..|..+.++.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999999999998875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=97.13 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=59.0
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
|+.+.|.|.+.|.|.|.++|+|+|..+. ..+++.|.|.+++.+|+|.|+|.|.| ..|...+.+.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASN-EYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEc-CCCEEEEEEEEEeC
Confidence 7889999999999999999999986542 12346899999999999999999999 78899999988873
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=96.57 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=55.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|+|. +.|.|.|.++|+|++..+..+ .++.......+ ..+|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~l~C~-v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECR-VSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG-----YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEE-EeEecCCEEEEEECCEECCCCCCeEEEEEcCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 479999 889999999999999887542 33433222222 23699999999999999999999999886555543
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=99.50 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.0
Q ss_pred ceee--cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 545 PRFR--ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 545 P~~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|.+. ..+.++.+.+|++++|.|.+.|. .|.+.|+|++..+. ...+++|+|.+++.+|+|.|+|.|.|..+.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCC
Confidence 4453 33457889999999999999999 99999999985432 234578999999999999999999995444
Q ss_pred ceeeEEEEEE
Q psy17146 617 EVGAEATVYL 626 (1011)
Q Consensus 617 ~~s~~~~l~V 626 (1011)
..+..+.|.|
T Consensus 81 ~~S~~~~L~V 90 (91)
T cd05740 81 MTSDPYILNV 90 (91)
T ss_pred EEeeeEEEEe
Confidence 5667777776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=99.17 Aligned_cols=82 Identities=12% Similarity=0.298 Sum_probs=63.9
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.+.+|+.+.|.|. +.|.|.|.+.|+|++..+....++........ .++|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~v~v~eG~~v~L~C~-v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 9 DVVTIMEGKTLNLTCT-VFGNPDPEVIWFKNDQDIELSEHYSVKLEQGK-----YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CcEEEcCCCEEEEEEE-EEEeCCCeEEEEECCEECCCCCCEEEEEcCCC-----EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 4678899999999999 67899999999999987765544433222211 24799999999999999999999999
Q ss_pred CceeEEEEEE
Q psy17146 221 RTYKVARLKL 230 (1011)
Q Consensus 221 ~~~~s~~v~v 230 (1011)
.. ++.+.|
T Consensus 83 ~~--~~~~~v 90 (92)
T cd05891 83 GE--TVDVTV 90 (92)
T ss_pred ce--eeEEEE
Confidence 77 444444
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=93.92 Aligned_cols=65 Identities=26% Similarity=0.494 Sum_probs=55.7
Q ss_pred cEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 561 GVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 561 ~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.|.|.+.|.|.|.++|+|++..+. ....+.|.|.++..+|+|.|+|.|.| ..|+.+..+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAEN-DVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEc-CCCEEEEEEEEEC
Confidence 47899999999999999999985432 23457899999999999999999999 6888888888765
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=96.14 Aligned_cols=72 Identities=25% Similarity=0.434 Sum_probs=57.3
Q ss_pred EEEEEEEEe-cCCCCeEEEEECCeEecccCCCC-eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
+.|.|.+.| .|.| .+.|+|+|+++....... +.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRN----KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEe----cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 8998 999999999987533222 12222 233579999999999999999999999999887765
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=97.37 Aligned_cols=75 Identities=24% Similarity=0.465 Sum_probs=58.1
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCe---EecccCC---CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGE---EIGVGSS---DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~---~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|+.++|.|.+.|.|.| .++|+|++. .+..... .++... ..+.|.|.+++.+|+|.|+|.|.|.+|+
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCce
Confidence 7899999999999999 999999742 1111011 111111 1368999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
....+.|.|
T Consensus 73 ~~~~~~l~v 81 (81)
T cd05765 73 LRANFPLSV 81 (81)
T ss_pred EEEEEEEeC
Confidence 999998875
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=96.23 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=59.6
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceee---cCCCcEEEeecCCCCCEEEEEEEEecCCCc-eeeE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVV---GNSPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAE 621 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~ 621 (1011)
|...|.++.+.+|+++.|.|.+.|.|.| .|.|+|+|..+.. ...+.|.|..+ .|+|.|.|.|.|. .|. .+..
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~-~G~~~s~~ 77 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNA-KGVTTSRT 77 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEec-cCcEEeee
Confidence 4567889999999999999999999999 7999999976532 34567999887 4789999999994 443 3344
Q ss_pred EEE
Q psy17146 622 ATV 624 (1011)
Q Consensus 622 ~~l 624 (1011)
+.|
T Consensus 78 a~~ 80 (81)
T cd05749 78 GTV 80 (81)
T ss_pred EEe
Confidence 443
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=97.60 Aligned_cols=77 Identities=29% Similarity=0.464 Sum_probs=60.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|.++|++++..+....++...... + .+.|+|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 G~~v~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCV-ATGVPTPIINWRLNWGHVPDSARVSITSEG-G-----YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEE-EEEecCCEEEEEECCeECCCCCCEEEEECC-C-----EEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 678999999 789999999999998877554444322211 1 358999999999999999999999998866666
Q ss_pred EEEE
Q psy17146 228 LKLL 231 (1011)
Q Consensus 228 v~v~ 231 (1011)
+.|+
T Consensus 74 ~~~~ 77 (78)
T cd05743 74 GILT 77 (78)
T ss_pred EEEE
Confidence 6554
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=101.81 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=64.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCCcEEEee-----cCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSPNLTLLM-----TSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~-----v~~~d~G~Y~ 607 (1011)
+|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.. ..++.+.+.. +..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 58889999999999999999999999999999999999854432 1233333322 3689999999
Q ss_pred EEEEecCCCc-eeeEEEEEE
Q psy17146 608 CKASVMGFPE-VGAEATVYL 626 (1011)
Q Consensus 608 C~a~n~~~~~-~s~~~~l~V 626 (1011)
|.|.| ..|. .+..+.|.|
T Consensus 81 C~a~N-~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHN-SLGEAVSRNASLEV 99 (100)
T ss_pred EEEEc-cccceecceEEEEe
Confidence 99999 4555 777777766
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=97.19 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=60.0
Q ss_pred CcEEEEEEEecC--CCCeEEEEecCCceee-------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 560 AGVNLLCDVDGN--PAPEITWIHEDSDKVV-------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 560 ~~~~l~C~~~g~--p~p~v~W~k~~~~~~~-------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+++.|.|.+.+. +.+.+.|+|+|..+.. ...+.|.|.+++.+|+|.|+|.|.| ..++.++++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n-~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQT-SVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEc-ccCceEEEEEE
Confidence 468999999874 4779999999866531 1346899999999999999999999 68999999999
Q ss_pred EEcCCC
Q psy17146 625 YLKGRP 630 (1011)
Q Consensus 625 ~V~~~P 630 (1011)
.|.+||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999987
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=98.50 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=60.0
Q ss_pred CcEEEEEEEecCCCC--eEEEEecCCceee-------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 560 AGVNLLCDVDGNPAP--EITWIHEDSDKVV-------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 560 ~~~~l~C~~~g~p~p--~v~W~k~~~~~~~-------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+++.|.|.+.|.|.| .+.|+|+|..+.. ...++|.|.+++.+|+|.|+|.|.| ..+..++.+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQT-VVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEec-CCCcEEEEEEE
Confidence 468999999999988 5699999865421 2357899999999999999999999 67889999999
Q ss_pred EEcCCC
Q psy17146 625 YLKGRP 630 (1011)
Q Consensus 625 ~V~~~P 630 (1011)
.|.+||
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 999887
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=96.04 Aligned_cols=67 Identities=25% Similarity=0.466 Sum_probs=53.0
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~ 719 (1011)
++|.|.+.|.|.| +|+|+|||.++......++.+.. ..+.|.|.++.. +|+|.|+|.|+|.+|+...
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKP------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeC------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999 99999999998654444444432 146889988754 7899999999999997643
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=101.62 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=82.5
Q ss_pred CceeEEecCcEEEEEEEcC----CCCeeEEeeCCee---c--C------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFA---L--G------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~~---l--~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
..+.+..||.++|+|.... ..-.|.|+|.+.. . . .........|+.+..+. ++++|.|.+++.
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~l 96 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANI 96 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeee
Confidence 3678999999999999873 2338999996431 0 0 11122344677777665 889999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
+|.|+|+|.+..++.+.. ..-.|++..+-. ..+..... ....-+..++.|. .+|.|.|.+.|+-+.+
T Consensus 97 SDdGtY~C~fQkge~~~~----k~ehLt~V~~~~-Lsv~a~~~-dFp~~~~~~i~C~-sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 97 SHDGNYLCRMKLGETEVT----KQEHLSVVKPLT-LSVHSERS-QFPDFSVLTVTCT-VNAFPHPHVQWLMPEG 163 (221)
T ss_pred cCCceEEEEEEcCCCcee----eeeeeeeeecce-EEEEeccc-cCCCCCeeEEEEe-cCCcCCchheeccccC
Confidence 999999999987654321 112222221110 00000000 0011345689999 9999999999997644
|
|
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=94.89 Aligned_cols=68 Identities=28% Similarity=0.553 Sum_probs=60.2
Q ss_pred CCcEEEEEEeecCCCccEEEEEECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 318 g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
|+.++|.|.+.|.|.| +++|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPS-DTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChh-hCEEEEEEEECCCCeEEEEEEEEE
Confidence 7889999999999987 999999999886532 2468999999987 999999999999999988888877
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=92.80 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=53.8
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
+.|.|.+.|.|.| ++.|+|||.++... ..++... ..+|.|.+++.+|+|.|+|.|+|..........+
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~-~~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEK-CSRYHVD--------GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCC-CcEEEeC--------CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 4799999999999 99999999998742 2333321 2479999999999999999999997765555444
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=94.69 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=55.7
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
.+.|.|. +.|.|.|+++|+|++..+..+.++......+ .+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~~l~c~-~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05748 1 SVRLEVP-ISGRPTPTVTWSKDGKPLKLSGRVQIETTAS------STSLVIKNAERSDSGKYTLTLKNPAGEKSAT 69 (74)
T ss_pred CEEEEee-EeeeCCCeEEEEECCEEcCCCCeEEEEECCC------eEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence 3789999 8899999999999998886555554333222 3689999999999999999999999987433
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=96.08 Aligned_cols=72 Identities=28% Similarity=0.504 Sum_probs=55.2
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-E
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-S 718 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~ 718 (1011)
|+|.|.+.|.|.| .++|++++..... ....++.+.. .++|.|.++..+|+|.|.|.|.|..|.+ +
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-------NGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-------CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 5799999999999 9999997542211 0234444433 3689999999999999999999999977 6
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
..+.|+|
T Consensus 73 ~~~~l~~ 79 (79)
T cd05734 73 KSMVLTV 79 (79)
T ss_pred eEEEEeC
Confidence 6776654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=94.83 Aligned_cols=71 Identities=24% Similarity=0.510 Sum_probs=53.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE-E
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV-E 720 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~-~ 720 (1011)
+.|.|.+.|.|.| +|+|+|||.++......++.+.. ..++|.|..+.. .|.|.|+|.|+|.+|.... .
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 73 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKP------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNN 73 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeC------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeE
Confidence 4799999999999 99999999988543444444332 136788877764 3789999999999997654 4
Q ss_pred EEE
Q psy17146 721 IML 723 (1011)
Q Consensus 721 ~~l 723 (1011)
++|
T Consensus 74 ~~~ 76 (77)
T cd05874 74 IVI 76 (77)
T ss_pred EEE
Confidence 443
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=93.96 Aligned_cols=65 Identities=26% Similarity=0.393 Sum_probs=55.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+.|.|.+.|.|.|.+.|+|++..+. ....++|+|.++..+|+|.|+|.|.| ..|..+..+.|.|+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN-SEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEc-CCCeEEEEEEEEEC
Confidence 4799999999999999999975432 34567999999999999999999999 67888888888773
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=95.37 Aligned_cols=76 Identities=18% Similarity=0.378 Sum_probs=59.3
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.+. .|+...+.+|++++|.|.+.+.|.+..+.|+|||..+.. ....|.|.++ .+|+|.|+|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------------~~~~l~i~~~-~~dsG~Y~C 63 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------------TTNSYRIRAA-NNDSGEYRC 63 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------------cCCeEEEeec-ccCCEEeEE
Confidence 3444 456678999999999999999887547999999998741 1258999999 999999999
Q ss_pred EEEcCCCCeEEEEEEE
Q psy17146 709 SVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~ 724 (1011)
.|.|. ..+..+.|.
T Consensus 64 ~a~~~--~~S~~v~l~ 77 (78)
T cd05752 64 QTQGS--SLSDPVHLE 77 (78)
T ss_pred ECCCC--cCCCCEEEe
Confidence 99986 444444443
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=94.30 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=52.6
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~ 719 (1011)
+.|.|.+.|.|.| .|+|+|+|..+......++.+... .++|.|..+.. +|+|.|+|.|+|.+|....
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRR------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCC------CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999 999999999876545556655321 36899987642 4699999999999996643
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-10 Score=98.65 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=62.4
Q ss_pred cceeecCCceEEEc---CCCcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVD---RGAGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~---~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n 612 (1011)
.|.|...|.++.+. +|+.++|.|.+.|.|.|.++|+|++..+.. ..++.|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 37788888887665 478999999999999999999999865431 234789998875 6999999999999
Q ss_pred cCCCce-eeEEEE
Q psy17146 613 MGFPEV-GAEATV 624 (1011)
Q Consensus 613 ~~~~~~-s~~~~l 624 (1011)
..|+. +..+.|
T Consensus 81 -~~G~~~S~~~~l 92 (94)
T cd05848 81 -SIGSILSREALL 92 (94)
T ss_pred -CCCeEEeccEEE
Confidence 45544 444443
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-10 Score=94.06 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=54.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee-ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
+.|+|. +.|.|.|.+.|+|++..+.. ..++.......+ ..+|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 1 v~L~C~-v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECR-VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG-----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEE-EeecCCCeEEEEECCEECCCCCCcEEEEEcCCC-----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 479999 78999999999999987754 233332222222 2479999999999999999999999987555444
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=97.51 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=62.3
Q ss_pred cceeecCCceEEEcCC---CcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRG---AGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G---~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n 612 (1011)
.|.|...|.++.+.+| ++++|.|.+.|.|.|.++|+++|..+.. ..+++|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 3778888988887666 5799999999999999999999865432 224689998765 6999999999999
Q ss_pred cCCCc-eeeEEEE
Q psy17146 613 MGFPE-VGAEATV 624 (1011)
Q Consensus 613 ~~~~~-~s~~~~l 624 (1011)
. .|. .+..+.|
T Consensus 81 ~-~G~~~s~~a~l 92 (94)
T cd05850 81 R-CGTVVSREANL 92 (94)
T ss_pred C-cCcEEEEEEEE
Confidence 4 444 4445554
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=95.45 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=61.0
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCceee---ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVV---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
|...|.++.+.+|+++.|.|.+.|+|.| +|.|+|++..+.. ...+.|.|..+ .|+|.|.|.|.|..+...+..+
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 3456888999999999999999999999 7999999875432 33456888776 5789999999998776666555
Q ss_pred EE
Q psy17146 469 TV 470 (1011)
Q Consensus 469 ~v 470 (1011)
+|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 54
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-10 Score=93.88 Aligned_cols=67 Identities=21% Similarity=0.402 Sum_probs=58.1
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
|+.+.|.|.+.|.|.|.++|+|++..+ .....++|.|.+++.+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN-FFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEEC-CCCceEEEEEEEC
Confidence 788999999999999999999998543 334457899999999999999999999 6888888888765
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-10 Score=98.74 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=64.2
Q ss_pred CeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece-----eEEEeeecCCceEEEEEEEEEeeccCcCCc
Q psy17146 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV-----RVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209 (1011)
Q Consensus 135 ~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~-----~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 209 (1011)
|.|.......+.+|+.+.|.|. +.|.|.|.+.|+|++..+.... ++... .. ...+.|.|.+++.+|+|
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCE-AEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--GH----ARVSSLTLKDVQLTDAG 75 (96)
T ss_pred ccceecCceeEecCCcEEEEEE-EeEcCCCcEEEEECCcccCCCCccccceEEEe--CC----ccEEEEEECcCCcCcCE
Confidence 4555555677889999999999 7799999999999886554321 11111 11 12368999999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEE
Q psy17146 210 TFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
.|+|.|.|..|... ..+.|
T Consensus 76 ~Y~C~a~N~~G~~~--~s~~l 94 (96)
T cd05732 76 RYDCEASNRIGGDQ--QSMYL 94 (96)
T ss_pred EeEEEEEeCCCCcE--EEEEE
Confidence 99999999999874 44444
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-10 Score=95.79 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=55.3
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC-CCCEEEEEEEEcCCCCeE
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH-DHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~~ 718 (1011)
.|+++.|.|.+.|.|.| .++|+|++..+......++.+.. ..|.|.++.. +|+|.|+|.|+|.+|+..
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~~~~--------~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYSLVG--------GNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEEEEC--------CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 34679999999999999 99999999998543344554432 5799998874 899999999999999754
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-10 Score=95.60 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=61.4
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCC-ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGT-GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+.+.+|+.+.|.|. +.|.|. .++|+|++ ..+..+.++.... ++. .+.|.|.++..+|+|.|+|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~-~~G~P~-~v~W~k~~g~~~~~~~r~~~~~--~g~----~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 8 SKVELSVGESKFFTCT-AIGEPE-SIDWYNPQGEKIVSSQRVVVQK--EGV----RSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred cceEEcCCCeEEEEEE-EEEeCC-eEEEEeCCCeEecCCCCEEEEe--CCC----eeEEEEecCChHHCEEEEEEEEcCC
Confidence 3566789999999999 778998 99999854 4444444443221 111 2589999999999999999999999
Q ss_pred CCceeEEEEEEEE
Q psy17146 220 DRTYKVARLKLLV 232 (1011)
Q Consensus 220 g~~~~s~~v~v~v 232 (1011)
|... ...+.|.+
T Consensus 80 G~~~-~~~i~l~~ 91 (92)
T cd05866 80 GQTQ-EATVVLEI 91 (92)
T ss_pred CcEE-EEEEEEEE
Confidence 8763 55555543
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=94.63 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=57.2
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
++|.|. +.|.|.|.++|+|++..+.... ++.. ... .+.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 v~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCH-IDGHPRPTYQWFRDGTPLSDGQGNYSV--SSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEE-eeecCCCcEEEEECCEECCCCCccEEE--eCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 479999 7899999999999988765432 2211 111 24799999999999999999999999876666777
Q ss_pred EEEE
Q psy17146 230 LLVK 233 (1011)
Q Consensus 230 v~v~ 233 (1011)
|.|.
T Consensus 72 l~v~ 75 (77)
T cd05760 72 LSII 75 (77)
T ss_pred EEEe
Confidence 7663
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-10 Score=96.45 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=64.1
Q ss_pred cceEeeCCCceEecCCC---cEEEEeecCCCCCCceEEEeCCCcee------eccCCcEEEEeec-cCCCeEEEEEEEEc
Q psy17146 390 GPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTS-DDLAGRYYCKASVM 459 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~---~v~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~-~~d~G~Y~C~a~n~ 459 (1011)
+|.|...|.++.+.++. .+.|.|.+.|+|.|.++|+|++..+. ...++.|.|.++. .+|+|.|+|.|.|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 47788888877666544 79999999999999999999975432 2235789998875 69999999999998
Q ss_pred CCcceeeEEEE
Q psy17146 460 GFPEVGAEATV 470 (1011)
Q Consensus 460 ~~~~~s~~~~v 470 (1011)
.+...+..+.|
T Consensus 81 ~G~~~s~~a~l 91 (93)
T cd05849 81 YGKVRSREATL 91 (93)
T ss_pred cceEEEccEEE
Confidence 77766666655
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=96.96 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=60.3
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCce--------------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDK--------------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~--------------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|+.++|.|.+.|.|.|.+.|+|++... ....++.|+|.+++.+|+|.|+|.|.| ..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLN-VAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEc-CCCceEEEEEE
Confidence 788999999999999999999987542 122356899999999999999999999 67888999999
Q ss_pred EEcCC
Q psy17146 625 YLKGR 629 (1011)
Q Consensus 625 ~V~~~ 629 (1011)
.|.+.
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 99764
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-10 Score=95.80 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=61.2
Q ss_pred CCcEEEEEEEEec--CCCCeEEEEECCeEecccCCC-CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 643 GDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSD-DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 643 G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
|+.++|.|.+.|. |.| .+.|+++++.+...... ...... ......+.|.|.+++.+|+|.|+|.|.|..|..++
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLS--EATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccc--cceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 7899999999999 777 99999988765421111 011111 11234689999999999999999999999999999
Q ss_pred EEEEEe
Q psy17146 720 EIMLKP 725 (1011)
Q Consensus 720 ~~~l~V 725 (1011)
+..|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 988876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=94.50 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=63.7
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|++..+ ...++.|+|.++ .+|+|.|+|+|.|. ..+..+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l-~~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~ 75 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL-ETTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVH 75 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe-eccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEE
Confidence 456778889999999999999999998864 79999998655 356789999999 99999999999873 5555555
Q ss_pred EEE
Q psy17146 624 VYL 626 (1011)
Q Consensus 624 l~V 626 (1011)
|.|
T Consensus 76 l~V 78 (78)
T cd05752 76 LEV 78 (78)
T ss_pred EeC
Confidence 543
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=97.94 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=55.6
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCC----ce---------ee---------cCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDS----DK---------VV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~----~~---------~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|+.++|.|.+.|.|.|.|+|+|++. .+ .. .....|.|.+++.+|+|.|+|.|.| ..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN-SIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec-ccC
Confidence 6889999999999999999999631 10 00 1235799999999999999999999 678
Q ss_pred ceeeEEEEEEc
Q psy17146 617 EVGAEATVYLK 627 (1011)
Q Consensus 617 ~~s~~~~l~V~ 627 (1011)
...+++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 88888888773
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-10 Score=93.57 Aligned_cols=68 Identities=28% Similarity=0.482 Sum_probs=56.2
Q ss_pred CCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
|++..+.+|++++|.|.+.+..+.+.|+|+|.++.. ..|+.+.. .+|.|.+++.+|+|.|+|.+.|..
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~------~~~~~~~~------~~L~I~~~~~~DsG~Y~C~a~n~~ 68 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDDVQSINWTKDGVQLGE------NNRTRITG------EEVQIKDAVPRDSGLYACVTSSPS 68 (79)
T ss_pred CCcEEecCCCCEEEEEEecCCCceEEEeeCCcCCCC------CceEEEeC------CEEEECCCChhhCEEEEEEEeCCC
Confidence 567889999999999999998778999999977632 24555532 179999999999999999998853
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.6e-10 Score=94.86 Aligned_cols=79 Identities=13% Similarity=0.283 Sum_probs=59.9
Q ss_pred eeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 143 ~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+.+|+.+.|.|. +.|.|.|.+.|+|++..+..+.+....... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~v~~G~~~~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 4 HAVPAANTVKFRCP-AAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGSI 77 (85)
T ss_pred EEcCCCCEEEEEEE-cCCCCCCEEEEEECCEECCCCCceeeeEEe-----CCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence 35678999999999 788999999999999887654332111110 113579999999999999999999999977
Q ss_pred eeEEE
Q psy17146 223 YKVAR 227 (1011)
Q Consensus 223 ~~s~~ 227 (1011)
..+..
T Consensus 78 ~~~~~ 82 (85)
T cd05857 78 NHTYH 82 (85)
T ss_pred EEEEE
Confidence 44433
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=96.31 Aligned_cols=88 Identities=31% Similarity=0.448 Sum_probs=64.2
Q ss_pred CceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--cccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
.++++.+|++|+|.|.+.+ +.+.+.|+|++..+.. ........|+.+.... .+.++|.|.+|+.+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEe
Confidence 6889999999999999998 6779999999864311 1111233577655443 3568999999999999999999987
Q ss_pred CCCCCcceeeeEEEEEE
Q psy17146 112 GILGEPAIRSRFATLTV 128 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V 128 (1011)
.+ ..++.++|+|
T Consensus 84 ~~-----~~~~~~~~~v 95 (95)
T cd05882 84 MP-----VRTAKATVTV 95 (95)
T ss_pred ec-----cccEEEEEEC
Confidence 42 2345555554
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=94.60 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=61.6
Q ss_pred CCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 550 RPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|..+...+..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678889999999999998 799999999999874432 23357899999999999999999999433334556
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 66543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-10 Score=90.62 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=55.5
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC---cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~---~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
++|.|.+.|.|.| .+.|+|||+++... .....|.|.++..+ |+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~-D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLNHTFKRGVHLTIYEVTEK-DAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCCEEccCCEEEECcCCHH-HCEEEEEEEEECCCceeeEEEEEE
Confidence 4789999999998 99999999999764 23468999999998 999999999999998876666655
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=96.92 Aligned_cols=88 Identities=27% Similarity=0.393 Sum_probs=65.8
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec--eeEEEeeecCCceEEEEEEEEEeeccC-cCCc
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN--VRVTEEASVDGRRTTVKSTLVLTPKKE-HHNT 209 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G 209 (1011)
+|.|.......+.+|+.+.|.|. +.|.|.| .+.|++++..+... .++.+...... ....++|.|.+++. +|.|
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~-~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~--~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECF-IFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP--GGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEE-EcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC--CceEEEEEECCccccccce
Confidence 45666566777889999999999 7799998 69999998877542 34443332211 12236899999998 5599
Q ss_pred EEEEEEEeCCCCcee
Q psy17146 210 TFTCQAQNTADRTYK 224 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~~ 224 (1011)
.|+|.|.|..|.+..
T Consensus 79 ~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 79 SYNCTAWNSFGSGTA 93 (98)
T ss_pred eEEEEEEcCCCcccE
Confidence 999999999998743
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-10 Score=91.86 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred EEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 153 L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|.|. +.|+|.|+++|+||+..+..+.+......... .....+.|.|.++..+|+|.|+|.|.|..|.+..+
T Consensus 3 i~~~-v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFT-VKGNPKPTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEE-EeEeCCCceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 6788 78999999999999998866543321111111 11124689999999999999999999999987433
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.8e-10 Score=92.81 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=56.0
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|++.|++++..+....... +.......|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 G~~~~l~C~-~~g~P~p~i~W~~~g~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCE-AEGIPQPTITWRLNGVPIEELPPDP-------RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEE-ceeeCCCEEEEEECCEECCCCCCcc-------eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 678999999 7899999999999988775432211 11112358999999999999999999999998744433
Q ss_pred E
Q psy17146 228 L 228 (1011)
Q Consensus 228 v 228 (1011)
+
T Consensus 73 l 73 (76)
T cd04978 73 V 73 (76)
T ss_pred E
Confidence 3
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-10 Score=96.60 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=63.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeec-----CCCCCEEEEEEEEec
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMT-----SDDLAGRYYCKASVM 613 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v-----~~~d~G~Y~C~a~n~ 613 (1011)
|...|.+..+.+|+++.|.|.+.|.|.|.++|+|+|..+. ...+++|.|.++ ..+|+|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 4567888899999999999999999999999999986442 223567888777 589999999999994
Q ss_pred CCCc-eeeEEEEEE
Q psy17146 614 GFPE-VGAEATVYL 626 (1011)
Q Consensus 614 ~~~~-~s~~~~l~V 626 (1011)
..|. .+..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 1454 466777754
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-10 Score=92.35 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=56.1
Q ss_pred EEEEEEEEe-cCCCCeEEEEECCeEecccCC--CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFS-IPPPEKVTWSYRGEEIGVGSS--DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
+.|.|.+.+ .|.+ .++|+++|+.+..... .++.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.+++++.
T Consensus 1 ~~L~C~a~~~~p~~-~~~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSL-RFKWFKNGKEIGAKNKPDNKIKIRK----KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCC-ceEEEECCcccccCCCCCceEEEEe----CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999876 4667 9999999999864322 2233322 233578999999999999999999999999988775
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
+
T Consensus 76 ~ 76 (76)
T cd05895 76 V 76 (76)
T ss_pred C
Confidence 3
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-10 Score=92.50 Aligned_cols=64 Identities=23% Similarity=0.467 Sum_probs=54.2
Q ss_pred EEEEEEEecCCCCeEEEEecCCce----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.++|+|++... .....+.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N-~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN-TAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEc-CCCEEEeeEEEEE
Confidence 479999999999999999997531 122356899999999999999999999 6788888888877
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=91.55 Aligned_cols=66 Identities=29% Similarity=0.496 Sum_probs=53.9
Q ss_pred EEEEEEEecCCCCeEEEEecCCce--------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK--------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
++|.|.+.|.|.|.+.|+|++..+ ....++.|.|.+++.+|+|.|+|.|.|..+...+..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 479999999999999999987433 233467899999999999999999999544446788888774
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-10 Score=90.33 Aligned_cols=64 Identities=25% Similarity=0.530 Sum_probs=54.3
Q ss_pred EEEEEEEecCCCCeEEEEecCCce-----eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK-----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.+.|+|++... ....++.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN-MVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEc-CCCcEEEEEEEEC
Confidence 479999999999999999997543 233567899999999999999999999 6788888887765
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=93.79 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=59.8
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------c---CCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------G---NSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~---~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
...|.+..+..|+++.|.|.+.|.|. .+.|++.+..... . ..++|+|.+++.+|+|.|+|.|.|..++
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 45577888999999999999999974 9999984332211 1 1247999999999999999999994345
Q ss_pred ceeeEEEEEE
Q psy17146 617 EVGAEATVYL 626 (1011)
Q Consensus 617 ~~s~~~~l~V 626 (1011)
...+++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5666766653
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=89.73 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=56.8
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC----cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA----ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~----~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
++|.|.+.|.|.| .+.|+|||.++... .....|.|.+++.+ |+|.|+|.|.|..|..+.+..+.|.
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~-D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEKNRTKKSGHSLTIKDVTEE-DAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCCEEEcCCCEEEECcCCHH-HCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999987 89999999998753 23578999999998 9999999999999988777777663
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=91.97 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred EEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCC-ceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee
Q psy17146 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDG-RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 153 L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
|.|. +.|+|.|+++|+|++..+..+........... ......+.|+|.++..+|+|.|+|.|.|..|.+..
T Consensus 3 i~~~-v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 3 IPFT-VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEE-eEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 6788 78999999999999988876543222211110 11223468999999999999999999999998743
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=90.45 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC--CeEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG--SDSVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G--~~~~~ 720 (1011)
|++++|.|.+.|.|.+ .+.|+++++..............+ .....+.|.|.+++.+|+|.|.|.|+|..+ ..+++
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 7899999999999998 999999876532111000011110 123367999999999999999999999887 77888
Q ss_pred EEEEec
Q psy17146 721 IMLKPQ 726 (1011)
Q Consensus 721 ~~l~V~ 726 (1011)
+.|+|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 888874
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=89.35 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=52.7
Q ss_pred EEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+.|.|.+.|.|.|.+.|+|++..+ .....+.|.|.++..+|+|.|+|.|.| ..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N-~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARN-TIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEEC-CCCcEEEEEEe
Confidence 479999999999999999988543 234567999999999999999999999 67777777765
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=89.85 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=57.5
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
.|.++++..|+++.|.|.+..+.+.+.|++++.++... ..|+.+... .|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~-----~~r~~~~~~------~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKSNLARVVWKFDGKVLTPE-----SAKYLLYRD------GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCCCCCeEEEEECCEECCCC-----CceEEEECC------cEEEeCCCHHHCEEEEEEEEec
Confidence 58899999999999999988777799999999887532 146655322 5999999999999999999874
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=89.88 Aligned_cols=67 Identities=30% Similarity=0.546 Sum_probs=55.5
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
|+.+.|.|.+.|.|.|.+.|++++.... ....++|.|..+..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASN-AAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEEC-CCCeEEEEEEEEC
Confidence 7889999999999999999998543322 23457899999999999999999999 5777777777764
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=93.54 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=63.4
Q ss_pred CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--cccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
++++.+.+|++|+|.|.+.+ +.+.+.|++.+..+.. .......+|+.+... ..+.++|+|.+++.+|+|.|+|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeE
Confidence 57899999999999999997 6679999976532211 111223467776433 3456799999999999999999998
Q ss_pred eCCCCCcceeeeEEEEEE
Q psy17146 111 TGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 111 ~~~~~~~~~~s~~~~l~V 128 (1011)
... ..+..+.|+|
T Consensus 83 t~~-----~~~~~~~l~v 95 (95)
T cd07701 83 TMP-----VKTSKAYLTV 95 (95)
T ss_pred eec-----CccEEEEEEC
Confidence 732 1245566654
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=87.37 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=54.0
Q ss_pred CCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 318 g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
|+.++|.|.+.|.|.| .++|+|++.++.... ....|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~---d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKEDEMPVGRNVLELTNIY---ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCccceecCccEEEEeccc---cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999998 999999999876532 23578898874 7899999999999988877765
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=91.55 Aligned_cols=85 Identities=13% Similarity=0.253 Sum_probs=63.0
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc-c-----CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV-G-----SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~-~-----~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|+++.|.|.+.+.|.| .|.|++++..+.. + ...++.+... ......|.|.++..+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKS---TPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeC---CCceEEEEECCCCcccCEEEEEE
Confidence 46779999999999999999999 8999998765321 0 2345544332 22357999999999999999999
Q ss_pred EEcCCCCeEEEEEEEe
Q psy17146 710 VSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V 725 (1011)
|.. .-..++..+|+|
T Consensus 81 ~~t-~~~~~~~~~~~v 95 (95)
T cd05882 81 IFT-MPVRTAKATVTV 95 (95)
T ss_pred EEe-eccccEEEEEEC
Confidence 987 335555555543
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=92.18 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=59.9
Q ss_pred EEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 554 ~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+....|++++|.|.+.|.|.|.+.|+|++..+.. .....|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSN-RAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEc-CCccEEEEEEEeC
Confidence 4466799999999999999999999999866532 2236899999999999999999999 5777777777654
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=89.67 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=54.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+.|.|.+.|.|.|.+.|+|++..+. ......|.|.++..+|+|.|+|.|.| ..|..+..+.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASN-SLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEe-CCceEEEEEEEEEC
Confidence 4799999999999999999975432 23356899999999999999999999 67888888888773
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=90.49 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=64.4
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.+..|+.++|.|.+.+.|.+ .+.|++++..+.. ...+..... ......|.|.++..+|.|.|.|.|.|..|..+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~--~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKK--EHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcc--cCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence 46689999999999999999 8999999988763 222222111 12246899999999999999999999999998
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05729 79 HTYKVDV 85 (85)
T ss_pred EEEEEeC
Confidence 8888764
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-10 Score=89.59 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=53.6
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|.|. +.|.|.|++.|+|++..+... .++. .+ ..+|.|.+++.+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~----~~------~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPK-VKAFPAPEVIWLKDGLPAAEKCSRYH----VD------GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEee-EEEcCCCeEEEEECCEECCCCCcEEE----eC------CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 469999 789999999999999876543 2221 11 23799999999999999999999877665555555
Q ss_pred EE
Q psy17146 230 LL 231 (1011)
Q Consensus 230 v~ 231 (1011)
|.
T Consensus 70 ~~ 71 (72)
T cd07702 70 LI 71 (72)
T ss_pred EE
Confidence 53
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=91.08 Aligned_cols=67 Identities=31% Similarity=0.484 Sum_probs=55.7
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCC--c-e-----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDS--D-K-----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~--~-~-----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|+.++|.|.+.|.|.|.+.|+|++. . . .....++|.|.++..+|+|.|+|.|.| ..|+....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N-~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARN-SGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEec-CCceEEEEEEE
Confidence 7899999999999999999999742 1 1 122346899999999999999999999 67888888887
Q ss_pred EE
Q psy17146 625 YL 626 (1011)
Q Consensus 625 ~V 626 (1011)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=93.55 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=61.3
Q ss_pred ceEEEcCCCcEEEEEEEec-----CCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 552 YSVQVDRGAGVNLLCDVDG-----NPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g-----~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
....+.+|+.+.|.|.+.+ .|.+.+.|+|++..... ..++.|.|.++..+|+|.|+|.+.| ..+.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N-~~g~ 85 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRN-STYC 85 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcC-CCcc
Confidence 3566789999999999999 68899999999854321 2357899999999999999999999 5777
Q ss_pred eeeEEEEEE
Q psy17146 618 VGAEATVYL 626 (1011)
Q Consensus 618 ~s~~~~l~V 626 (1011)
....++|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 777777764
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=91.51 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=62.5
Q ss_pred cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+....+.+|++++|.|.+.+ .|.+ .+.|++++..+.. +.. ...+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~----~~~--------~~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPS----RAM--------DFNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCC----ccc--------ccCCEEEECCCCHHHCEEEEEEEec
Confidence 345667899999999999975 6777 9999999876532 111 1136899999999999999999999
Q ss_pred CCCCeEEEEEE
Q psy17146 713 PYGSDSVEIML 723 (1011)
Q Consensus 713 ~~G~~~~~~~l 723 (1011)
.+|..++.+.|
T Consensus 74 ~~g~~~~~~~l 84 (85)
T cd05754 74 MLDTDEATATL 84 (85)
T ss_pred cCCeEeEEEEE
Confidence 99999998876
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-09 Score=86.10 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=61.3
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARL 228 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v 228 (1011)
.++|+|.+.+++|+++|+||||+.++..... ....++.+...++|.|.....+|++.|+|+|.|..+.. ......
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~ 76 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQY 76 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEE
Confidence 3789999999999999999999999854321 22455567778899999999999999999999998865 234444
Q ss_pred EEE
Q psy17146 229 KLL 231 (1011)
Q Consensus 229 ~v~ 231 (1011)
.|.
T Consensus 77 ~l~ 79 (80)
T cd05885 77 SLD 79 (80)
T ss_pred EEe
Confidence 443
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=91.37 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=63.4
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC--CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
....+.+|+.+.|.|.+.+ |.+ .+.|+|++..+.... ..++.... ..|.|.+++.+|+|.|.|.|.|.
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTE--------DGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcC--------CCEEEccCCHHHCEEEEEEEecC
Confidence 4456889999999999987 777 899999998876432 12333322 45999999999999999999976
Q ss_pred C-CCeEEEEEEEecC
Q psy17146 714 Y-GSDSVEIMLKPQK 727 (1011)
Q Consensus 714 ~-G~~~~~~~l~V~~ 727 (1011)
. +...+++.|.|.+
T Consensus 74 ~~~~~~~~~~l~V~~ 88 (89)
T cd04979 74 GFKQTLATYSLNVLE 88 (89)
T ss_pred ccceeEeEEEEEEec
Confidence 5 4677888888753
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=90.73 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCC----ceeeeceeEEEee-ecCCceE--EEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 148 DREIELECISANGKPPAEITWIDGT----GTVMSNVRVTEEA-SVDGRRT--TVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~----~~l~~~~~~~~~~-~~~~~~~--~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
|+.+.|.|. +.|.|.|.|+|+|++ ..+..+....... ...+... ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~-~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCK-VYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEE-EecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 678999999 789999999999853 3232211111011 1111000 1136899999999999999999999999
Q ss_pred CceeEEEEEE
Q psy17146 221 RTYKVARLKL 230 (1011)
Q Consensus 221 ~~~~s~~v~v 230 (1011)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 8865555543
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-09 Score=90.56 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=63.0
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
+|..+.+.+|++++|.|.+.++.+.+.|+|++..+..... ...|+.... ..|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~~~~--~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEE--PEERLLVTE------DGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred cceEEEEECCCcEEEEEeCCCCCceEEEEECCcccccccC--cCceEEEcC------CCEEEccCCHHHCEEEEEEEecC
Confidence 4678899999999999999888889999999976543211 123444321 24999999999999999999875
Q ss_pred CCCCcceeeeEEEEEEE
Q psy17146 113 ILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 113 ~~~~~~~~s~~~~l~V~ 129 (1011)
.. ...+....|+|.
T Consensus 74 ~~---~~~~~~~~l~V~ 87 (89)
T cd04979 74 GF---KQTLATYSLNVL 87 (89)
T ss_pred cc---ceeEeEEEEEEe
Confidence 32 334555666664
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-09 Score=87.44 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
|.+..+..|+++.|.|.+.+ |.+ +|.|++||.++..+ ..++.+.. ..|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~-~~r~~~~~--------~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPE-SAKYLLYR--------DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCC-CceEEEEC--------CcEEEeCCCHHHCEEEEEEEEecc
Confidence 45677999999999999864 667 89999999999753 34565543 469999999999999999999874
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.3e-09 Score=89.77 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.+..+.+|++++|.|.+.+.|.+ .+.|++.+..+.. ....++.+... .....+|+|.+++.+|+|.|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRA---SWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEEC---CCCcEEEEECcCCcccCEEEEE
Confidence 356779999999999999999999 8999864322110 12456655332 2234789999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.+.+. ...++...|+|
T Consensus 80 ~~~t~-~~~~~~~~l~v 95 (95)
T cd07701 80 SLFTM-PVKTSKAYLTV 95 (95)
T ss_pred EeEee-cCccEEEEEEC
Confidence 99985 44477777654
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-09 Score=87.48 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=54.7
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
+.|.|. +.|.|.|.+.|+|++..+..+.+.......++ ..|.|.+++.+|.|.|+|.|.|..|.......+.|
T Consensus 1 ~~L~C~-v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCH-AEGIPLPRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeE-eeecCCCEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 469999 77999999999999887765432222222222 47999999999999999999999998754444433
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=87.28 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=60.1
Q ss_pred CceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+++++.+|++|+|.|.+.+. ...+.|++.+..+. ........+|+.+... ....++|+|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEc
Confidence 67899999999999999984 56799998874431 1122235678887742 35788999999999999999999976
Q ss_pred C
Q psy17146 112 G 112 (1011)
Q Consensus 112 ~ 112 (1011)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 4
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=90.04 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=56.9
Q ss_pred CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCccc--CCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRN--LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~--~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
++++.+.+|++|+|.|.+.+ +.+.+.|++.+..+..... .....|+.+... ....++|+|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEe
Confidence 46789999999999999986 5678999975432211111 112357777533 3456789999999999999999998
Q ss_pred eC
Q psy17146 111 TG 112 (1011)
Q Consensus 111 ~~ 112 (1011)
..
T Consensus 83 ~~ 84 (95)
T cd05717 83 TM 84 (95)
T ss_pred cC
Confidence 64
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=87.71 Aligned_cols=65 Identities=23% Similarity=0.415 Sum_probs=50.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCc--------------eeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSD--------------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~--------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.+.|+|++.. .....+++|.|.++..+|+|.|+|.|.|..+...+..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999999999999999997432 112345789999999999999999999943334466666654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=6e-09 Score=87.29 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=47.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC----cCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE----HHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|. +.|+|.|+++|+|++..+............. .+.|.|.++.. +|+|.|+|.|.|..|..
T Consensus 1 i~l~C~-~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCE-AKGNPPPTFSWTRNGTHFDPEKDPRVTMKPD------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEee-CcccCCCeEEEEECCeECCCCCCCCEEEeCC------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 479999 7899999999999988774422111111111 25788888753 78999999999999976
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=8e-09 Score=87.66 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=57.2
Q ss_pred CceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+...+.+|++++|.|.+.+ .+.+ .+.|+|+|..+... ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~-~~~w~k~g~~~~~~--------------~~~~~l~I~~~~~~dsG~Y~C~~~~~~ 71 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVY-KVTYYRDGKAKKYS--------------HSNSNLSIPQATLSDSGSYHCSGIIGS 71 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcce-EEEEEECCeEcccc--------------CCCceEEECccCHHHCEEEEEEEEeCC
Confidence 3446889999999999864 4455 89999999876421 113689999999999999999999999
Q ss_pred CCe-EEEEEEE
Q psy17146 715 GSD-SVEIMLK 724 (1011)
Q Consensus 715 G~~-~~~~~l~ 724 (1011)
|.. +..+.|+
T Consensus 72 ~~~~s~~~~i~ 82 (83)
T cd05753 72 YDYSSEPVSIT 82 (83)
T ss_pred ceecCCCEEEE
Confidence 843 4455554
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=85.68 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=48.7
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee--ceeEEEeeecCCceEEEEEEEEEeecc----CcCCcEEEEEEEeCCCCcee
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS--NVRVTEEASVDGRRTTVKSTLVLTPKK----EHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~----~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
+.|.|+ +.|+|.|.++|+|++..+.. +.++. ... ..++|.|..+. .+|+|.|+|.|.|..|.. .
T Consensus 1 ~~l~C~-~~G~P~P~v~W~k~g~~~~~~~~~~~~--~~~------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 70 (77)
T cd05875 1 IIIECE-AKGNPVPTFQWTRNGKFFNVAKDPRVS--MRR------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA-L 70 (77)
T ss_pred CEEEEe-ccccCCCEEEEEECCEEccCcCCCcEE--EeC------CCceEEEeccCCCCCCCCCEEEEEEEEeccceE-E
Confidence 479999 88999999999999876532 22222 111 12578888764 357999999999999976 3
Q ss_pred EEEEE
Q psy17146 225 VARLK 229 (1011)
Q Consensus 225 s~~v~ 229 (1011)
+..+.
T Consensus 71 s~~~~ 75 (77)
T cd05875 71 SNKIL 75 (77)
T ss_pred EEEEE
Confidence 44443
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.6e-09 Score=86.09 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=48.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC----cCCcEEEEEEEeCCCCceeEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE----HHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
+.|.|+ +.|+|.|+++|+|++..+............ ..++|.|..+.. .|+|.|+|.|.|..|... +.
T Consensus 1 ~~l~C~-a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~ 72 (77)
T cd05874 1 IVIQCE-AKGKPPPSFSWTRNGTHFDIDKDPKVTMKP------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV-SN 72 (77)
T ss_pred CEEEee-CcccCCCeEEEEECCeECCCcCCCCEEEeC------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE-ee
Confidence 479999 889999999999998876332111111111 124788877654 478999999999999763 33
Q ss_pred EEEE
Q psy17146 227 RLKL 230 (1011)
Q Consensus 227 ~v~v 230 (1011)
.+.|
T Consensus 73 ~~~~ 76 (77)
T cd05874 73 NIVI 76 (77)
T ss_pred EEEE
Confidence 4443
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=87.15 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 643 GDTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
|++++|.|.+.+.+.+ ..+.|.+.++...... ........ .......+.|.|.+++.+|+|.|+|.|+|..|.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 7899999999987643 3789998876542111 11101000 0012346899999999999999999999999999999
Q ss_pred EEEEec
Q psy17146 721 IMLKPQ 726 (1011)
Q Consensus 721 ~~l~V~ 726 (1011)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 988875
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=87.69 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=63.0
Q ss_pred ecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCce---eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDK---VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~---~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
...|....+.+|++++|.|.+.+ .|.+.+.|++++... ....++.|.|.++..+|+|.|+|.|.| ..|.....+.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n-~~g~~~~~~~ 83 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSN-MLDTDEATAT 83 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEec-cCCeEeEEEE
Confidence 35677888999999999999975 788899999998542 223467999999999999999999999 6777777766
Q ss_pred E
Q psy17146 624 V 624 (1011)
Q Consensus 624 l 624 (1011)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 5
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=86.40 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCC
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGIL 114 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 114 (1011)
..+++.+|++++|.|....+.+.+.|+|++.............|+.... ..|.|.+++.+|+|.|+|.+.+...
T Consensus 4 ~~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 4 KVVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTE------RGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred eEEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEec------CeEEEeeCChhHCEEEEEEEEccCC
Confidence 3567899999999999766778999998653322111222234655432 2599999999999999999985432
Q ss_pred CCcceeeeEEEEEEEc
Q psy17146 115 GEPAIRSRFATLTVLV 130 (1011)
Q Consensus 115 ~~~~~~s~~~~l~V~~ 130 (1011)
+ .....+.|+|..
T Consensus 78 ~---~~~~~~~l~v~~ 90 (91)
T cd05871 78 S---QTLAKYTLHVIE 90 (91)
T ss_pred e---EEEEEEEEEEec
Confidence 2 233456676653
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-09 Score=85.91 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=51.7
Q ss_pred EEEEEEccCC-CCCcEEEEEeCCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 151 IELECISANG-KPPAEITWIDGTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 151 v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
+.|.|. +.| .|.+.++|+|++..+....+... ..... ...+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 ~~l~C~-~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCE-ATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK----KKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEE-ccCCCCCceEEEEcCCeeccccCCcceEEEEec----CceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 469999 556 99999999999888765433211 01111 123689999999999999999999999977443
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=87.90 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=60.8
Q ss_pred ceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 637 TQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
.+.+..|..+.|.|...+. |.| .+.|+||++++.. .. ..+.. .+.|.|.++..+|+|.|+|.|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~--~~-~~~~~-------~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEG--DR-KRFVK-------GSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCC--Cc-cEEec-------CCEEEEeeCChhhCEEEEEEEE
Confidence 3567889999999987543 467 8999999999873 22 22222 3699999999999999999999
Q ss_pred cCCCCeEEEEEEEe
Q psy17146 712 NPYGSDSVEIMLKP 725 (1011)
Q Consensus 712 N~~G~~~~~~~l~V 725 (1011)
|.+|.....++..+
T Consensus 73 n~~~~~~~~~t~t~ 86 (92)
T cd05757 73 FTHNGKQYNVTRTI 86 (92)
T ss_pred ecCCCEEEEEEEEE
Confidence 99998776665544
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=88.63 Aligned_cols=72 Identities=28% Similarity=0.418 Sum_probs=57.4
Q ss_pred ceeecCCceEEEcCC---CcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEec
Q psy17146 545 PRFRARPYSVQVDRG---AGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASVM 613 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G---~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n~ 613 (1011)
|.|...|.++.+.++ +.+.|.|.+.|.|.|.++|+|++..+.. ..++.|.|.++. .+|+|.|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N- 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASN- 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEc-
Confidence 778888888766554 5799999999999999999999865421 224689998887 4999999999999
Q ss_pred CCCc
Q psy17146 614 GFPE 617 (1011)
Q Consensus 614 ~~~~ 617 (1011)
..|.
T Consensus 81 ~~G~ 84 (91)
T cd04967 81 IVGT 84 (91)
T ss_pred CCCE
Confidence 4444
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-08 Score=86.06 Aligned_cols=87 Identities=26% Similarity=0.429 Sum_probs=64.6
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeee--ceeEEEeeecCCceEEEEEEEEEeeccCcC-Cc
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMS--NVRVTEEASVDGRRTTVKSTLVLTPKKEHH-NT 209 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G 209 (1011)
+|.|.......+.+|+.+.|.|. +.+.|+| .|.|..++..+.. ..++.+...... ....++|+|.++...| .|
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~-~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~--~g~~S~L~I~~~~~~d~~g 78 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCF-IGSTPPPDRIAWAWKENVLESGTSERYTVERTSTG--SGVLSTLTINNIMEADFQT 78 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEE-EccCCCCcEEEEEEccccccCCCCCCEEEEEEccC--CCcEEEEEECCCccccCCc
Confidence 56777777888999999999999 5566765 6788887776644 245554443211 1235789999998766 89
Q ss_pred EEEEEEEeCCCCce
Q psy17146 210 TFTCQAQNTADRTY 223 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~ 223 (1011)
.|.|.|.|..|...
T Consensus 79 ~Y~C~a~N~~G~d~ 92 (98)
T cd05898 79 HYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEEeCCccce
Confidence 99999999999873
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-08 Score=83.44 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=57.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|++++|.|. +.+.|.+.+.|+++++..............+ .....++|.|.+++.+|+|.|.|.|.|..+....+..
T Consensus 1 Ge~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCI-VQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEE-EECCCccEEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 788999999 6788999999998765432111100001111 1223579999999999999999999998775545777
Q ss_pred EEEEEE
Q psy17146 228 LKLLVK 233 (1011)
Q Consensus 228 v~v~v~ 233 (1011)
+.|+|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 777664
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=85.66 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=60.6
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
...+.+|+.++|.|.+........+.|||+|..+........|.|.+++.+ |+|.|+|.+.|..|.. +..+.|+|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~-dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLS-DSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHH-HCEEEEEEEEeCCceecCCCEEEEC
Confidence 457899999999999865544458999999998876556789999999998 9999999999988754 45555543
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=85.19 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 148 DREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 148 g~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|+.+.|.|. +.+. |.+.++|++++..+.......... .........++|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 1 Ge~~~L~C~-~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCT-VLTELNEGVDFQWTYPGKKRGRGKSMVTRQ-SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEE-EEeCCCccEEEEEecCCcccCCceEeeccc-ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 788999999 6777 889999998876553321111000 011122345789999999999999999999999887655
Q ss_pred EEEEE
Q psy17146 226 ARLKL 230 (1011)
Q Consensus 226 ~~v~v 230 (1011)
+.+.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 55543
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=89.08 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=62.7
Q ss_pred eecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
...|..+.+.+|++|+|.|.+.. ....+.|+|....-. ........+|+.+..+...+.++|+|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 34578899999999999999997 566899998642100 000112347888876666788999999999999
Q ss_pred CceEEEEEEeC
Q psy17146 102 DARYQCQVSTG 112 (1011)
Q Consensus 102 ~G~Y~C~~~~~ 112 (1011)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999999864
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-08 Score=82.48 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=71.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
..+.|.+|+.+.|.|.+++.|+|..+.|.+++..+...... +....+.......+.|++..+..+|.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 45568999999999999999999449999999887643332 22222212234678999999999999999999999999
Q ss_pred CeEEEEEEEec
Q psy17146 716 SDSVEIMLKPQ 726 (1011)
Q Consensus 716 ~~~~~~~l~V~ 726 (1011)
+.+.++.|.|+
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998874
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=83.17 Aligned_cols=69 Identities=12% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeece----eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNV----RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
+.|+|.+..+.|.+.++|+|++..+.... ++.... . ...+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~--~----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK--K----KKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe--C----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 47999955567889999999988774321 111111 0 123689999999999999999999999976443
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-08 Score=81.84 Aligned_cols=81 Identities=36% Similarity=0.508 Sum_probs=60.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
+.|+|.+.+++|.+.++|+|++..+..+ ........++..+...+.|.|.....+|.|.|+|.|.|........+.++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 6899996667899999999998876543 222223334455666788999998899999999999998776666666666
Q ss_pred EE
Q psy17146 231 LV 232 (1011)
Q Consensus 231 ~v 232 (1011)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-08 Score=83.33 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=61.7
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|..+. ..+.+|+.++|.|.+.+.|.+ .+.|++++..+.... ..|.|.++..+|.|.|+|
T Consensus 1 kP~l~~~~-~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 1 KPVLSSSP-QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSSQ----------------NGLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp --EEEEES-SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEES----------------SEEEESSEEGGGTEEEEE
T ss_pred CcEEEccc-eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeeee----------------eeeeeeeeccccCEEEEE
Confidence 36666544 568999999999999998887 999999998876211 127788899999999999
Q ss_pred EEEcCCC-CeEEEEEEEe
Q psy17146 709 SVSNPYG-SDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G-~~~~~~~l~V 725 (1011)
.|.|..| ..+..+.|+|
T Consensus 63 ~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 63 RASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCCeEeeeEEeeC
Confidence 9999665 5667777764
|
... |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=81.83 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=59.6
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+.+.+|+.+.|.|. +.+.|.+.+.|+|++..+........... ......|.|.++..+|.|.|.|.+.|..|.
T Consensus 3 ~~~~~~G~~~~l~C~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 3 LHAVPAGSTVRLKCP-ASGNPRPTITWLKDGKPFKKEHRIGGYKV-----RKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred eeEecCCCcEEEEEE-cCCCCCCeEEEEECCEECcccCceeEEEc-----cCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 345678999999999 67899999999999877654332211111 112357999999999999999999999887
Q ss_pred ceeEEEEEE
Q psy17146 222 TYKVARLKL 230 (1011)
Q Consensus 222 ~~~s~~v~v 230 (1011)
. +..+.|
T Consensus 77 ~--~~~~~l 83 (85)
T cd05729 77 I--NHTYKV 83 (85)
T ss_pred E--EEEEEE
Confidence 5 444444
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.5e-08 Score=83.95 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=61.8
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|++++|.|.+.+.+.+ .+.|++.+..+.. ....+|.+... ......|+|.+++.+|+|.|+|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNF---SANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcC---CCCeeEEEEccCCcccCEEEEEE
Confidence 45678999999999999998888 8999863322110 12346655322 22346899999999999999999
Q ss_pred EEcCCCCeEEEEEEEe
Q psy17146 710 VSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V 725 (1011)
+.+... .++++.|+|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 998753 467766654
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-08 Score=84.44 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=56.2
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC------------CCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS------------SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~------------~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+.+|++|+|.|.+.+.+.+ .+.|+++++....+. ..++..... ........|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence 46789999999999999888 999998774432111 222322221 1122356899999999999999
Q ss_pred EEEEEcCCCCe
Q psy17146 707 NCSVSNPYGSD 717 (1011)
Q Consensus 707 ~C~a~N~~G~~ 717 (1011)
.|.|.|..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999988764
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.3e-08 Score=86.25 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=59.9
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCC---------------eecCCcccCCCCcceEEeecCCCceeEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDD---------------FALGPHRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~---------------~~l~~~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+..+.+..|++|+|+|.+... ...+.|.+.. .... ...-...+|+.+.++...++.+|
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~-~~~~~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYI-DDVGPFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceec-ccccCccCceEEeCCCCcCeeEE
Confidence 3577899999999999999863 2389994421 1110 00112235999988888889999
Q ss_pred EEeecccCCCceEEEEEEeCC
Q psy17146 93 EIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
.|.+++.+|+|.|+|.+.+..
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred EEccCCcccCEEEEEEEEcCC
Confidence 999999999999999999853
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=83.81 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=57.0
Q ss_pred eeecCCCcEEEEEEccCC----CCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 143 LYTTEDREIELECISANG----KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 143 ~~v~eg~~v~L~C~~~~g----~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
..+.+|+.+.|.|....+ +|.|.+.|+|++..+....... ...+.|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~----------~~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF----------VKGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE----------ecCCEEEEeeCChhhCEEEEEEEEec
Confidence 356789999999974333 3678999999998775432221 12358999999999999999999999
Q ss_pred CCCceeEEEEE
Q psy17146 219 ADRTYKVARLK 229 (1011)
Q Consensus 219 ~g~~~~s~~v~ 229 (1011)
.+.........
T Consensus 75 ~~~~~~~~t~t 85 (92)
T cd05757 75 HNGKQYNVTRT 85 (92)
T ss_pred CCCEEEEEEEE
Confidence 88764443333
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-08 Score=85.17 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=57.1
Q ss_pred ceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+.+|+.+.|.|.. .|.|.+ .|.|++++.++....+.+..+.. ..+.|.|.+++.+|+|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~------~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQ------TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeC------CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 4568899999999964 577888 99999998875322233333322 247999999999999999999999986
Q ss_pred Ce
Q psy17146 716 SD 717 (1011)
Q Consensus 716 ~~ 717 (1011)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 54
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-08 Score=84.81 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=54.0
Q ss_pred eeEEecCcEEEEEEEcC-CCCeeEEeeCCeec--CCc------ccCCCCcceEEeecC-CCceeEEEEeecccCCCceEE
Q psy17146 37 QTAVVGSRVTLPCRVID-KTGVLQWTKDDFAL--GPH------RNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l--~~~------~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
+.+.+|++|+|+|...+ +.+.+.|++++... +.. .......|+.+..+. ..+.++|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 56889999999999986 56789999776322 100 011123455444322 456789999999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.+.+.
T Consensus 82 C~v~~~ 87 (94)
T cd07690 82 CEVEDK 87 (94)
T ss_pred EEECCc
Confidence 999874
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-08 Score=81.98 Aligned_cols=79 Identities=28% Similarity=0.522 Sum_probs=61.4
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|.+...+ ..+.+|+.++|.|.+.+.|.+.+.|++++..+....+ .|.|.++..+|+|.|+|.|.+...+..+..++|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 4444444 5588999999999999999999999998755553333 388899999999999999999544566777777
Q ss_pred EE
Q psy17146 625 YL 626 (1011)
Q Consensus 625 ~V 626 (1011)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 65
|
... |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.7e-08 Score=82.46 Aligned_cols=80 Identities=18% Similarity=0.426 Sum_probs=59.9
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCe--Eecc--cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE-
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGE--EIGV--GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS- 711 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~--~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~- 711 (1011)
.+.+.+|+.++|.|.. +.|.| .+.|+|.+. .... ....++.... +.|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--------~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--------RGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--------CeEEEeeCChhHCEEEEEEEEc
Confidence 3457889999999996 57888 899998432 2211 1233444322 569999999999999999998
Q ss_pred cCCCCeEEEEEEEec
Q psy17146 712 NPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 712 N~~G~~~~~~~l~V~ 726 (1011)
|..|...+.++|.|.
T Consensus 75 ~~~~~~~~~~~l~v~ 89 (91)
T cd05871 75 HSFSQTLAKYTLHVI 89 (91)
T ss_pred cCCeEEEEEEEEEEe
Confidence 688878888888874
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-08 Score=76.76 Aligned_cols=63 Identities=27% Similarity=0.509 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+|++++|.|.+.+.|.+ .+.|++++..+. . ..... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~--~--~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP--E--SNRLS------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECC--C--CCEEe------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999888888 899999998876 1 11211 1246899999999999999999999876
|
|
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-08 Score=83.46 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=58.3
Q ss_pred eeeecCCcEEEEEEE-Ee----cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 638 QFGIPGDTARVECSA-FS----IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~-~g----~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
+.+..|....|.|.- .+ .+.| +++|+||++++.. ...++....+ .+.|.|.++..+|+|.|+|+|.|
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~-~~~~~~~~~~------~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDK-DNEKFYSLKG------STYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcC-CCcceEecCC------CCEEEEEEcChhhCEEEEEEEEE
Confidence 456788999999972 23 3556 8999999999874 2333333221 25799999999999999999999
Q ss_pred CCCCe----EEEEEEEe
Q psy17146 713 PYGSD----SVEIMLKP 725 (1011)
Q Consensus 713 ~~G~~----~~~~~l~V 725 (1011)
.+|.. ++.+.|.|
T Consensus 77 ~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 77 THEGKKYNITRIIKLRI 93 (95)
T ss_pred eeCCEEEEEEEEEEEEE
Confidence 98855 45555544
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-08 Score=82.89 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=56.3
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCc-eEE-EEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR-RTT-VKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~-~~~-~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+...+.+|+.+.|.|....|.|.+.+.|+|++..+... .+.| .+. ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~--------~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP--------EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc--------cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 35667899999999987899999999999987643210 0111 111 1358999999999999999999998
Q ss_pred CCCc
Q psy17146 219 ADRT 222 (1011)
Q Consensus 219 ~g~~ 222 (1011)
....
T Consensus 83 ~~~~ 86 (96)
T cd05727 83 SSTK 86 (96)
T ss_pred ccCC
Confidence 6544
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=85.18 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=59.1
Q ss_pred eecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCc------------ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH------------RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~------------~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
...|..+.+.+|++|+|.|.+......+.|||....-... ..-...+|+.+.... ...++|+|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCC
Confidence 3567889999999999999998855689999975321000 001123566665433 367899999999
Q ss_pred cCCCceEEEEEEeC
Q psy17146 99 LDDDARYQCQVSTG 112 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~ 112 (1011)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999763
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-08 Score=81.84 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred CceeeecCCcEEEEEE-EEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE-EEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECS-AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~-~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~ 713 (1011)
....+.+|+.+.|.|. ..|.|.| .|.|++++..... .+.|+.+.. .+.|.|.+++.+|+| .|.|.|+|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~-~~~Ri~~~~-------~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHIT-QDERVSMGQ-------NGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCcccc-ccccEEECC-------CceEEEEEEehhhCCCCeEEEEEcc
Confidence 4567899999999997 6999999 9999988765433 456666544 379999999999999 899999999
Q ss_pred CCCe
Q psy17146 714 YGSD 717 (1011)
Q Consensus 714 ~G~~ 717 (1011)
....
T Consensus 82 ~~~~ 85 (95)
T cd05845 82 GLRT 85 (95)
T ss_pred cccc
Confidence 7543
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=83.84 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=58.4
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCCee------cCCc--------ccCCCCcceEEeecCCCceeEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDDFA------LGPH--------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~~~------l~~~--------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
.|..+.+.+|++|+|+|.+.... ..+.|++.... +... ..-...+|+.+..+...++++|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 37788999999999999997532 36999874321 1000 01112257777766666788999
Q ss_pred EeecccCCCceEEEEEEeCC
Q psy17146 94 IYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
|.+++.+|+|.|.|.+.+..
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPP 103 (116)
T ss_pred EeeCCcccCEEEEEEEEeCC
Confidence 99999999999999998753
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-07 Score=75.06 Aligned_cols=81 Identities=31% Similarity=0.468 Sum_probs=61.8
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
.+.|.|.+.+++|.+.|+|||++.++...... ....+..+...++|.|.....+|+..|+|+|.|..-.. ......
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~---~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~-~~~~~~ 76 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTV---EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKD-LQTQRY 76 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccc---eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCC-ceeeEE
Confidence 36899999999999999999999888654221 11233346667899999999999999999999987543 566666
Q ss_pred EEEEe
Q psy17146 230 LLVKY 234 (1011)
Q Consensus 230 v~v~~ 234 (1011)
|.|.+
T Consensus 77 L~V~y 81 (82)
T cd05883 77 LEVQY 81 (82)
T ss_pred EEEEE
Confidence 66654
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=81.92 Aligned_cols=79 Identities=19% Similarity=0.107 Sum_probs=56.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeec-----CCcccC--------CCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL-----GPHRNL--------SGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l-----~~~~~~--------~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+++++.+..+.+|++|+|.|..... ...+.|+|..... ..+... ...+|..+..++ +|.|+
T Consensus 1 ~tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~ 75 (105)
T cd05774 1 LTIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQ 75 (105)
T ss_pred CeEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEe
Confidence 3567788889999999999987542 3389999974221 111111 123577765433 89999
Q ss_pred ecccCCCceEEEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~ 113 (1011)
+++.+|+|.|+|.+.+..
T Consensus 76 ~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 76 NVTQKDTGFYTLQTITTN 93 (105)
T ss_pred cCCcccCEEEEEEEEeCC
Confidence 999999999999998864
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=76.15 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=66.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+..|+++.|.|.+.+.+.+ .+.|+++ +..+. ...++..... .....|.|.++...|+|.|+|.+.|..|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 4567889999999999998777 9999998 87775 3445555442 1157899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
.....+.|.|
T Consensus 76 ~~~~~~~l~V 85 (86)
T smart00410 76 SASSTTTLTV 85 (86)
T ss_pred eEEEEEEEEE
Confidence 8887777765
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=76.15 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=66.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+..|+++.|.|.+.+.+.+ .+.|+++ +..+. ...++..... .....|.|.++...|+|.|+|.+.|..|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 4567889999999999998777 9999998 87775 3445555442 1157899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
.....+.|.|
T Consensus 76 ~~~~~~~l~V 85 (86)
T smart00409 76 SASSTTTLTV 85 (86)
T ss_pred eEEEEEEEEE
Confidence 8887777765
|
|
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=80.63 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.+...|. ..|.+|++|+|.|....+...+.|+|+|....... .........|.|.+|+.+|+|.|+|
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~-----------~~~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKK-----------PPEPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecCCCCCEEEEEECCCCccccc-----------cCCCceeEEEEccCCChhHCEEEEE
Confidence 55667775 47889999999999987777899999986542211 0112344579999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+..+.. ......|..+.|.|
T Consensus 71 ~~~~~~-~~~S~~Sd~lel~V 90 (91)
T cd05751 71 YYRSGV-ALWSEPSDPLELVV 90 (91)
T ss_pred EEECCC-CccCCCCCcEEEEe
Confidence 998753 11223455555554
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-07 Score=76.71 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=54.6
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+.+++.+|++++|+|......+.+.|++++..+. .++|+..... .|.|.+++.+|+|.|+|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~------~~~r~~~~~~------GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTPLN------AQFSYRVGTD------GLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCccEEEEECCcccC------CCcceEEeCC------CCEEEECCHhhCEEEEEEEec
Confidence 5789999999999999999888999999997763 2356665543 388999999999999999864
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-07 Score=76.32 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=62.5
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcE-EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAE-ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~-i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+++.+|+.+.|.|. ..++|+|+ +.|.+++..+............. ......+.|++..++.+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~-ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~-~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVE-YEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE-SNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEE-EEeCCCCeeeEEEcCCcccCccccceeEEecc-CceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 4678899999999999 88999998 99999987664422211112111 223356899999999999999999999998
Q ss_pred CCceeE
Q psy17146 220 DRTYKV 225 (1011)
Q Consensus 220 g~~~~s 225 (1011)
...+.+
T Consensus 89 ~~~s~t 94 (101)
T cd05860 89 ASASVT 94 (101)
T ss_pred CeEEEE
Confidence 866333
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-05 Score=82.72 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=60.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEEcC-CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC--CeeEEeeCC
Q psy17146 437 PNLTLLMTSDDLAGRYYCKASVMG-FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRG 513 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G~Y~C~a~n~~-~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~ 513 (1011)
..|.|..++..++|.|+-...+.. .......++|....+|. .......+.+|+...-.|.+...-++ ..+.|++||
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Ps-vsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPL-VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCc-ccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 449999999999999998776632 22334556666566666 44455667899999999999988444 489999999
Q ss_pred eEee
Q psy17146 514 EEIG 517 (1011)
Q Consensus 514 ~~i~ 517 (1011)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9885
|
|
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-07 Score=81.52 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=57.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeC----Cee--cC---Cc----ccCCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKD----DFA--LG---PH----RNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~----~~~--l~---~~----~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|..+.+.+|++|+|.|.+... ...+.|++. +.+ +. .. ..-...+|+.+..+...++++|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 3678999999999999998742 226999752 111 10 00 011112577766665677889999
Q ss_pred eecccCCCceEEEEEEeCC
Q psy17146 95 YPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~ 113 (1011)
.+++.+|+|.|+|.+.+..
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred eeCChhhCEEEEEEEEeCC
Confidence 9999999999999999753
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=79.07 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=56.9
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceE-EEEEEEEEeeccCcCCc-EEEEEEEeC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT-TVKSTLVLTPKKEHHNT-TFTCQAQNT 218 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~G-~Y~C~a~n~ 218 (1011)
+.+.+.||+.+.|.|....|.|.|.|.|++++..... .+.|.. ...+.|.|.+++.+|.| .|.|.|.|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~---------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT---------QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc---------ccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 4678899999999998679999999999987654332 122222 22368999999999999 799999998
Q ss_pred CCCc
Q psy17146 219 ADRT 222 (1011)
Q Consensus 219 ~g~~ 222 (1011)
....
T Consensus 82 ~~~~ 85 (95)
T cd05845 82 GLRT 85 (95)
T ss_pred cccc
Confidence 6543
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=78.05 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred CceeEEecCcEEEEEEE------------cCCCCeeEEeeCCeecCCcccCCCC-cceEEeecCCCceeEEEEeecccCC
Q psy17146 35 QDQTAVVGSRVTLPCRV------------IDKTGVLQWTKDDFALGPHRNLSGF-DRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v------------~~~~~~v~W~k~~~~l~~~~~~~~~-~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+.+||+|.|.|.. ......+.|+|++..+.....+... .|....++ .|.|.++..+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~------~Lwf~Pa~~eD 81 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED------SIWFRPAELQD 81 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC------EEEEEeCChhh
Confidence 45788999999999997 2223379999997555433222211 25554332 79999999999
Q ss_pred CceEEEEEEeCC
Q psy17146 102 DARYQCQVSTGI 113 (1011)
Q Consensus 102 ~G~Y~C~~~~~~ 113 (1011)
+|.|+|.+.|..
T Consensus 82 SG~Y~C~~rN~t 93 (104)
T cd05896 82 SGLYTCVLRNST 93 (104)
T ss_pred CeEEEEEECCCC
Confidence 999999999853
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.9e-07 Score=81.97 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=59.6
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-------CeeEEeeCCeec-----CC-ccc-----CCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-------GVLQWTKDDFAL-----GP-HRN-----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-------~~v~W~k~~~~l-----~~-~~~-----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|+.+.+.+|++|+|+|....+. ..+.|+|....- .. ... ....+|+.+..+...+.++|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 47789999999999999987432 368999875321 00 000 1122588887666778899999
Q ss_pred eecccCCCceEEEEEEeC
Q psy17146 95 YPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~ 112 (1011)
.+++.+|+|.|.|++...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=78.46 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred eecCCCcEEEEEEccC----CCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 144 YTTEDREIELECISAN----GKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~----g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.+|....|.|.-.. .++.++++||||+..+....+...... + ...|.|.++..+|+|.|+|+|.+..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~------~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-G------STYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-C------CCEEEEEEcChhhCEEEEEEEEEee
Confidence 3567889999996323 346789999999987654322111101 1 1369999999999999999999987
Q ss_pred CCc
Q psy17146 220 DRT 222 (1011)
Q Consensus 220 g~~ 222 (1011)
+..
T Consensus 79 ~g~ 81 (95)
T cd05897 79 EGK 81 (95)
T ss_pred CCE
Confidence 665
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-07 Score=81.66 Aligned_cols=82 Identities=27% Similarity=0.339 Sum_probs=60.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|..+.+.+|++|+|+|.+... ...+.|+|....-. ........+|+.+..+...+.++|+|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 4456788999999999999998763 45799998642110 0011122378888765556688999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999975
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=81.85 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=56.9
Q ss_pred eeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCc------c-----cCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 37 QTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPH------R-----NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~------~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
+++.+|++|+|.|.+... ...+.|+|....-... . .....+|+.+..+...+.++|+|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 367899999999999974 5589999865311000 0 11234688877665558899999999999999
Q ss_pred eEEEEEEeC
Q psy17146 104 RYQCQVSTG 112 (1011)
Q Consensus 104 ~Y~C~~~~~ 112 (1011)
.|.|.+.+.
T Consensus 81 ~Y~C~v~~~ 89 (105)
T cd00099 81 VYYCAVSLS 89 (105)
T ss_pred EEEEEEecC
Confidence 999999864
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=76.99 Aligned_cols=231 Identities=16% Similarity=0.264 Sum_probs=139.3
Q ss_pred cceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEE
Q psy17146 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECI 156 (1011)
Q Consensus 77 ~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~ 156 (1011)
++|.+-.........|.|++|...|+|.|+-...+... ..+......+.+...|....+...+ +.+|+...-.|.
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N--~~i~e~~~~~~v~~RPPsVsV~a~P---VL~Ge~YkAtC~ 268 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFN--RPLLDKHIYIRVCQRPASVDVLAPP---VLSGENYKASCI 268 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccceEEEEEecCCCC--CccccceEEEEEEecCCCccccCCc---cccCCCceEEEE
Confidence 56666666666677899999999999977666554322 2344555667776655544444443 357999999999
Q ss_pred ccCCCCC--cEEEEEeCCceeeeceeEEEee--ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc--eeEEEEEE
Q psy17146 157 SANGKPP--AEITWIDGTGTVMSNVRVTEEA--SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT--YKVARLKL 230 (1011)
Q Consensus 157 ~~~g~P~--~~i~W~k~~~~l~~~~~~~~~~--~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~--~~s~~v~v 230 (1011)
++.-+|+ ..++||+||..+.......... ....+.+...++|.+.+...+.--..+|.+.-..+.. ..++...-
T Consensus 269 vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP 348 (490)
T PHA03271 269 VRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIP 348 (490)
T ss_pred eeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCC
Confidence 8888885 4689999988775522211111 1223344555677776654455568999998654422 23444445
Q ss_pred EEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEE---EEE
Q psy17146 231 LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE---VQV 307 (1011)
Q Consensus 231 ~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~---~~~ 307 (1011)
.|..+|.+.+... .|. ..|.+.-.|....+.|+.++.+......+. .+ .| .|. ..+
T Consensus 349 ~VY~~P~ISv~Fe------dG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~--~i--------tG--vC~erPGlV 407 (490)
T PHA03271 349 TVYHHPRISLAFK------DGY---AICTIECVPSGITVRWLVHDEPQPNTTYDT--VV--------TG--LCRTIDRHR 407 (490)
T ss_pred ccccCCeEEEEEe------CCE---EEEeccccCCCcEEEEEecCCCCCCccccc--cc--------cc--ccCCCCCce
Confidence 5666776665543 333 346666666668999999887654321110 00 00 111 011
Q ss_pred EeeCCcccc-cCCcEEEEEEeecCCCc
Q psy17146 308 SVIGSNRLV-EGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 308 ~~~~~~~v~-~g~~v~l~C~~~~~p~~ 333 (1011)
.+.....+. .++.+.-.|...|.|.+
T Consensus 408 NLrS~lPlSd~dgpveYTCrL~GYP~~ 434 (490)
T PHA03271 408 NLISRIPVQDNWQKTKYTCRLIGYPFD 434 (490)
T ss_pred eeeccCCchhcCCceeEEEEEeecCCC
Confidence 111112233 44778999999999864
|
|
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-07 Score=75.20 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=52.5
Q ss_pred cEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEE
Q psy17146 645 TARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEI 721 (1011)
Q Consensus 645 ~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~ 721 (1011)
.++|.|.+.| .|.+ .|+|+++|+++.... .......+.......+.|.|.....+|.|.|+|.|.|..... .+++
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 3689999997 5878 999999999886321 111111111111234688898888888999999999988644 4455
Q ss_pred EEE
Q psy17146 722 MLK 724 (1011)
Q Consensus 722 ~l~ 724 (1011)
+|.
T Consensus 79 ~l~ 81 (82)
T cd05759 79 TLD 81 (82)
T ss_pred EEc
Confidence 443
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=78.05 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=54.9
Q ss_pred cCcEEEEEEEcCC----CCeeEEeeCCeecC--Cc---ccC------CCCcceEEeec-CCCceeEEEEeecccCCCceE
Q psy17146 42 GSRVTLPCRVIDK----TGVLQWTKDDFALG--PH---RNL------SGFDRYAMIGS-DEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 42 G~~v~L~C~v~~~----~~~v~W~k~~~~l~--~~---~~~------~~~~r~~i~~~-~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|++|+|+|.+.+. ...+.|+|...... .. ... ...+|+.+..+ ...+.++|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 8999999999743 12689998762111 00 000 11247776543 245778999999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+|.+.+.. ...+..+.|+|
T Consensus 81 ~C~v~~~~----~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDG----FYEEATVELKV 99 (100)
T ss_pred EEEEecCC----cEEEEEEEEEE
Confidence 99998743 23455566655
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.7e-07 Score=75.76 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 148 DREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 148 g~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|+++.|.|. +.+. +...+.|.+.++......................++|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 1 Ge~~~L~C~-~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCT-ARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEE-EEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 788999999 4444 4568899987764422111000000001122345799999999999999999999988866444
Q ss_pred EEEE
Q psy17146 226 ARLK 229 (1011)
Q Consensus 226 ~~v~ 229 (1011)
..+.
T Consensus 80 t~~~ 83 (86)
T cd05862 80 TIVI 83 (86)
T ss_pred EEEE
Confidence 4443
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.3e-07 Score=81.52 Aligned_cols=96 Identities=26% Similarity=0.361 Sum_probs=68.6
Q ss_pred eeecCCceeEEecCcEEEEEEEc-C-CCCeeEEeeCCe-----ecC--------CcccCCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI-D-KTGVLQWTKDDF-----ALG--------PHRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~-~-~~~~v~W~k~~~-----~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
++..|..+.+.+|++|+|.|... . ....+.|++... .+. ........+|..+..+...+.++|+|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44567889999999999999999 3 334899998543 111 01112223677777777778899999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
.+++.+|+|.|.|.+.... .......+.|+|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~---~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSN---EQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESS---EEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECC---CCEECCcEEEEC
Confidence 9999999999999998752 233444555554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=71.77 Aligned_cols=63 Identities=29% Similarity=0.525 Sum_probs=49.2
Q ss_pred CCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+|+.+.|.|. ..+.|.+.+.|++++..+.... +.......|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCP-AEGDPVPNITWLKDGKPLPESN----------RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEee-CccCCCCeEEEEECCEECCCCC----------EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 5889999999 6788999999999877664111 1112235899999999999999999998754
|
|
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=72.20 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=42.6
Q ss_pred cCcEEEEEEE-c-CCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 42 GSRVTLPCRV-I-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 42 G~~v~L~C~v-~-~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
|++|+|.|.+ . .+...+.|+|++..+.... ..............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 3 3566999999986543211 11111111111113999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00013 Score=77.38 Aligned_cols=175 Identities=20% Similarity=0.309 Sum_probs=116.4
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITW 168 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W 168 (1011)
.|.|+.++...+|.|+=+..+.+. ....+..++++.+.+|. ..+...+ +.+|+...-.|.+..-+|. ..++|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~--~~~~~~~VtV~~yr~Ps-vsv~~~P---vL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADR--PHRYGTWTRVRMFRRPS-LSIRPHA---VLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCC--ceeeeeEEEEEEecCCc-ccccCCc---cccCCCceEEEEeeeecCCCceEEEE
Confidence 499999999999999999877553 23456667788787765 2232222 4579999999998888885 46899
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc---eeEEEEEEEEEeCCceEEEecC
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT---YKVARLKLLVKYAPKVQVSVIG 244 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P~~~~~~~~ 244 (1011)
|+|+..+..-...........+.+...++|++.....+ .--..+|.+.-..+.. ..++...-.|...|.+.+....
T Consensus 257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F~d 336 (466)
T PHA03270 257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFGG 336 (466)
T ss_pred EeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEEeC
Confidence 99999885422211112222333556678877664332 3347999998544433 2344455567777777665542
Q ss_pred cceeecCceEEEEEEcccCCCccEEEEEeCCcccCC
Q psy17146 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~ 280 (1011)
| ...|++.-.|....+.|+.++.+...
T Consensus 337 ------G---~AVCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 337 ------D---EAVCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred ------C---EEEEeccccCCCCEEEEEecCCCCCC
Confidence 3 23577776666789999998876644
|
|
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-07 Score=75.95 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=58.6
Q ss_pred eeeecCCcEEEEEEEE------e----cCCCCeEEEEECCeEecccCC-----CCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 638 QFGIPGDTARVECSAF------S----IPPPEKVTWSYRGEEIGVGSS-----DDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~------g----~p~p~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
..+.+|+.+.|.|... + ......+.|+|++..+..... .|+... ...|.|.++..+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--------~~~Lwf~Pa~~eD 81 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--------EDSIWFRPAELQD 81 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--------CCEEEEEeCChhh
Confidence 4578999999999861 1 112237999999866554221 133322 3689999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|++.|.-.-...++.|+|
T Consensus 82 SG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 82 SGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CeEEEEEECCCCcceEEEEEEEC
Confidence 99999999999887777777764
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-05 Score=81.21 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=62.3
Q ss_pred CCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCC--eeEEeeC
Q psy17146 436 SPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYR 512 (1011)
Q Consensus 436 ~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~ 512 (1011)
...|.|..++...+|.|+-...+... ......++|....+|. .......+.+|+...-.|.+...-++. .++|++|
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Ps-vsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPS-LSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCc-ccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 44699999999999999999887433 3344556776666666 444556677999999999999884444 8999999
Q ss_pred CeEee
Q psy17146 513 GEEIG 517 (1011)
Q Consensus 513 ~~~i~ 517 (1011)
+.++.
T Consensus 260 g~~V~ 264 (466)
T PHA03270 260 GDEVF 264 (466)
T ss_pred Ccccc
Confidence 99874
|
|
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.7e-07 Score=79.70 Aligned_cols=86 Identities=27% Similarity=0.334 Sum_probs=57.7
Q ss_pred ecCcEEEEEEEcCCC-----------CeeEEeeCC--eecC------Cc--ccCCCCcceEEeec-CCCceeEEEEeecc
Q psy17146 41 VGSRVTLPCRVIDKT-----------GVLQWTKDD--FALG------PH--RNLSGFDRYAMIGS-DEEGDYSLEIYPVM 98 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~~-----------~~v~W~k~~--~~l~------~~--~~~~~~~r~~i~~~-~~~~~~~L~I~~v~ 98 (1011)
.|++|+|+|.+.... ..+.|+|.. .... .. ..-...+|+.+..+ ...+.++|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997532 479999963 1111 00 00112257777543 34577899999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.+|+|.|.|.+.... ......+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~----~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGI----EDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCC----CcceEEEEEEEEE
Confidence 999999999998753 2345556676653
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=76.11 Aligned_cols=83 Identities=28% Similarity=0.332 Sum_probs=56.0
Q ss_pred cCcEEEEEEEcCCCC--eeEEeeCCee----cC-----Ccc--cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 42 GSRVTLPCRVIDKTG--VLQWTKDDFA----LG-----PHR--NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 42 G~~v~L~C~v~~~~~--~v~W~k~~~~----l~-----~~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
|++|+|+|....... .+.|+|.... +. ... .-...+|..+. ....+.++|+|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 899999999876433 7999986421 10 000 01112455554 3345678999999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEE
Q psy17146 109 VSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V 128 (1011)
+..... +..+..+.|+|
T Consensus 80 ~~~~p~---g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPD---GSKSGTMCLTV 96 (97)
T ss_pred EEeCCC---CCeeeEEEEEE
Confidence 976543 33566777776
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=72.43 Aligned_cols=70 Identities=27% Similarity=0.529 Sum_probs=54.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|.+.+++|.++++|+|++.++.... ......++..+...+.|.+.....++.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 68999988889999999999998875433 22233344577777889998888888999999999987654
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.1e-07 Score=71.46 Aligned_cols=64 Identities=19% Similarity=0.437 Sum_probs=47.8
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 215 (1011)
|+.++|.|.+..+.+...+.|+|++..+............... ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS----TSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEE----EEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccccee----eeEEEEccCCHHHCEEEEEEC
Confidence 7899999995367788899999998877665444322222211 125999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-05 Score=79.23 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=62.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEEc--CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC--CeeEEeeC
Q psy17146 437 PNLTLLMTSDDLAGRYYCKASVM--GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYR 512 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G~Y~C~a~n~--~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~ 512 (1011)
-.|.|.+++..++|.|+-...+. +.......++|..-.+| ........+.+|+...-.|.+...-++ ..++|+.|
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P-sVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP-NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC-CccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45999999999999999887652 23345567777777777 444455667899999999999988444 48999999
Q ss_pred CeEeec
Q psy17146 513 GEEIGV 518 (1011)
Q Consensus 513 ~~~i~~ 518 (1011)
+.++..
T Consensus 368 g~~V~~ 373 (566)
T PHA03269 368 FGNIGK 373 (566)
T ss_pred CcccCc
Confidence 988753
|
|
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=72.33 Aligned_cols=73 Identities=8% Similarity=0.107 Sum_probs=56.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEec------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|++++|+|.+.+.... .+.|++-+..+. ...+.||.+... .+...+|+|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeC---CCCEEEEEECcCCcccCEEEEEE
Confidence 45678999999999999988766 788987664432 124567776642 24466899999999999999999
Q ss_pred EEc
Q psy17146 710 VSN 712 (1011)
Q Consensus 710 a~N 712 (1011)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 975
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=72.46 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=48.5
Q ss_pred EEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|+|... |.|++ +|+||+||++|..... .. .+.......++|.|.-...+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~skP~a-~i~W~k~~~~l~~~~~---~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAA-TLRWYRDRKELKGVIS---QQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCC-eEEEEECCEECCCCcc---cc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999886 55777 9999999999964211 00 100001135689999999999999999999999854
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=75.58 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...+..|++|+|.|... .+.. .+.|+|+|....... .. ..+..+.|.|.+++.+|+|.|+|
T Consensus 2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~~------~~---~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVKK------PP---EPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CCEEEecCCCccCCCCcEEEEEecC-CCCC-EEEEEECCCCccccc------cC---CCceeEEEEccCCChhHCEEEEE
Confidence 4666666667789999999999875 4555 899999998644210 00 13345789999999999999999
Q ss_pred EEEcC
Q psy17146 709 SVSNP 713 (1011)
Q Consensus 709 ~a~N~ 713 (1011)
.+.|.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 99987
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-06 Score=71.37 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=59.1
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~ 229 (1011)
+.|.|.+.+++|.+.|+|+|++..+..... ......++..+...+.|.|.....+|...|+|+|.+..... ..+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~ 80 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQR 80 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEE
Confidence 689999888899999999999988765432 22333344577777899998888899999999999987654 3344433
Q ss_pred E
Q psy17146 230 L 230 (1011)
Q Consensus 230 v 230 (1011)
|
T Consensus 81 ~ 81 (83)
T cd07705 81 I 81 (83)
T ss_pred e
Confidence 3
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=72.07 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=57.9
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEec-CC------ceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DS------DKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-~~------~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +. ...... ...|.|.++..+|+|.|+|.+.+ ..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~-~~~~~~~~ 80 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN-SSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc-CCCeEEEE
Confidence 456788999999999999998899999998 32 222222 26899999999999999999997 45555555
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=72.07 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=57.9
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEec-CC------ceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DS------DKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-~~------~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +. ...... ...|.|.++..+|+|.|+|.+.+ ..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~-~~~~~~~~ 80 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN-SSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc-CCCeEEEE
Confidence 456788999999999999998899999998 32 222222 26899999999999999999997 45555555
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=77.72 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=56.1
Q ss_pred ecCcEEEEEEEcCC-------------CCeeEEeeCCee----cCCc--c----cCCCCcceEEeec-CCCceeEEEEee
Q psy17146 41 VGSRVTLPCRVIDK-------------TGVLQWTKDDFA----LGPH--R----NLSGFDRYAMIGS-DEEGDYSLEIYP 96 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------------~~~v~W~k~~~~----l~~~--~----~~~~~~r~~i~~~-~~~~~~~L~I~~ 96 (1011)
.|++|+|+|.+... ...+.|+|.... +... . .-...+|+++... ...+.++|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 49999999999853 248999986321 1000 0 0011248887652 245778999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
++.+|+|.|+|.+.++... .+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~----~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIED----NYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCC----ceeEEEEEEE
Confidence 9999999999999875321 3444555554
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=77.63 Aligned_cols=85 Identities=33% Similarity=0.449 Sum_probs=56.1
Q ss_pred ecCcEEEEEEEcCC-------CCeeEEeeCC---e-e--cC--Ccc----cCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 41 VGSRVTLPCRVIDK-------TGVLQWTKDD---F-A--LG--PHR----NLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------~~~v~W~k~~---~-~--l~--~~~----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.|++|+|+|.+... ...+.|+|.. . . +. ... ......|+.+. ....+.++|+|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 48999999998763 3489999973 1 1 10 000 01111344332 234578899999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
+|.|.|.+.+.. ...+..+.|.|..
T Consensus 80 ~G~Y~C~v~~~~----~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGI----EDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCC----CceEEEEEEEEEE
Confidence 999999998753 2346667777753
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=78.66 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=57.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecC------Ccc--cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALG------PHR--NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~------~~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|..+.+.+|++|+|.|.+... ...+.|+|....-. ... .....+|+.... ....+.|+|.+++.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence 5567888999999999999999764 46799998642110 000 111124666533 34678999999999
Q ss_pred CCCceEEEEEEeC
Q psy17146 100 DDDARYQCQVSTG 112 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~ 112 (1011)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=77.45 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=56.4
Q ss_pred ecCcEEEEEEEcCC-------CCeeEEeeCCee-------c-CCcc---c-CCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 41 VGSRVTLPCRVIDK-------TGVLQWTKDDFA-------L-GPHR---N-LSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------~~~v~W~k~~~~-------l-~~~~---~-~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.|++|+|+|.+... ...+.|+|.... + .... . -...+|+.+... ..+.++|+|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 48999999998753 236999997521 0 0000 0 112357777543 3567899999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+|.|+|.+.++. ......+.|.|.
T Consensus 80 sG~Y~C~v~~~~----~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGL----EDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecc----cceEEEEEEEEE
Confidence 999999998753 234555666664
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-06 Score=74.81 Aligned_cols=82 Identities=27% Similarity=0.316 Sum_probs=53.9
Q ss_pred CcEEEEEEEcCCC----CeeEEeeCCee----c--C-C--cc--cCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 43 SRVTLPCRVIDKT----GVLQWTKDDFA----L--G-P--HR--NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 43 ~~v~L~C~v~~~~----~~v~W~k~~~~----l--~-~--~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
++|+|+|.+.... ..|.|+|.... + . . .. .-....|..+..+.. +.++|+|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL-EDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC-CceEEEEccCCcccCEEEEE
Confidence 5899999998743 27999997642 0 0 0 00 011135666554332 67899999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V 128 (1011)
.+..... +.....+.|+|
T Consensus 80 ~v~~~~~---g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQ---GNRQKVTTLTV 97 (98)
T ss_pred EEEeCCC---CcEEEEEEEEe
Confidence 9875332 33555566665
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-06 Score=75.70 Aligned_cols=82 Identities=18% Similarity=0.430 Sum_probs=58.9
Q ss_pred cCCcEEEEEEEEecC-----CCCeEEEEECCe------E-e-cc--------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSIP-----PPEKVTWSYRGE------E-I-GV--------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p-----~p~~v~W~~~g~------~-l-~~--------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
.|++|+|.|.+...| ....|.|+|... . + .. ....|+.+... .....+|.|.+++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~ 77 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA---HDLDASLVITDLRL 77 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC---CCCcEEEEEccCCh
Confidence 489999999988764 223799999531 1 1 10 01233333211 22357899999999
Q ss_pred CCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 701 DHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|+|.|.|.+.|..|..+..+.|.|.
T Consensus 78 ~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 78 EDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred HHCEEEEEEEEecccceEEEEEEEEE
Confidence 99999999999999999999999885
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=4e-06 Score=73.25 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=56.5
Q ss_pred CcEEEEEEEcCCCC-----eeEEeeCCe----ec--CC-----cccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 43 SRVTLPCRVIDKTG-----VLQWTKDDF----AL--GP-----HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 43 ~~v~L~C~v~~~~~-----~v~W~k~~~----~l--~~-----~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|+|+|.+....+ .|.|.+... .+ .. ...-...+|..+.. ...++.+|+|.+++.+|+|.|+
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~ 79 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYI 79 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEE
Confidence 36899999985322 699998531 11 00 00112337888773 3457789999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|.+.+...+ ..+..+.|+|+
T Consensus 80 C~v~t~P~g---~~~~~~~L~V~ 99 (99)
T cd05886 80 CEFATFPTG---NRESQLNLTVY 99 (99)
T ss_pred EEEEeCCCC---CeEEEEEEEEC
Confidence 999985433 35667777773
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=79.32 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=58.4
Q ss_pred ecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCC--------ccc-----CCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGP--------HRN-----LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~--------~~~-----~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+ +...+.|+|....-.. ... -....|+.+..+.....++|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 4577889999999999999976 3558999996421110 000 01235777765544468899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=76.93 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=57.3
Q ss_pred eeEEecCcEEEEEEEcC--CCCeeEEeeCCeecC-------CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 37 QTAVVGSRVTLPCRVID--KTGVLQWTKDDFALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
+.+.+|++|+|+|.+.. ....+.|+|...... ........+|+.+..+...+.++|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 57899999999999876 455799998763211 011112246888776666788999999999999999999
Q ss_pred EEEeC
Q psy17146 108 QVSTG 112 (1011)
Q Consensus 108 ~~~~~ 112 (1011)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98764
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=75.71 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=58.7
Q ss_pred cCCcEEEEEEEEecC-----CCCeEEEEECC-----e-EecccCCCCeE--------EecCCcCccceeEEEEcCCCCCC
Q psy17146 642 PGDTARVECSAFSIP-----PPEKVTWSYRG-----E-EIGVGSSDDYS--------VLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p-----~p~~v~W~~~g-----~-~l~~~~~~~~~--------~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.|++|+|.|.+...+ ....|.|+|.. . .+......... +... .......+|+|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 489999999998764 23389999962 1 11111111111 1100 112356899999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|.+.|..+..+..++|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999998888999999885
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-05 Score=79.49 Aligned_cols=187 Identities=20% Similarity=0.348 Sum_probs=121.3
Q ss_pred cceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEE
Q psy17146 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECI 156 (1011)
Q Consensus 77 ~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~ 156 (1011)
++|.+-.....+...|+|++++..++|.|.=++.+...+ ....+..+.+.++.+|. ..+...+ +.+|+...-.|.
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~-t~~~~~~VtV~~yr~Ps-VsV~p~P---VL~Ge~YkAtC~ 350 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANK-NVINEHHITVMSYKRPN-ITVIGDP---VLLGNPYAAYCK 350 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCC-ceeeeeEEEEEEecCCC-ccccCCc---cccCCCceEEEE
Confidence 566665555666778999999999999999777654332 23445667777777763 2333222 457999999999
Q ss_pred ccCCCCC--cEEEEEeCCceeeecee-EEEeeecCCceEEEEEEEEEeeccCcC--CcEEEEEEEeCCCCce---eEEEE
Q psy17146 157 SANGKPP--AEITWIDGTGTVMSNVR-VTEEASVDGRRTTVKSTLVLTPKKEHH--NTTFTCQAQNTADRTY---KVARL 228 (1011)
Q Consensus 157 ~~~g~P~--~~i~W~k~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d--~G~Y~C~a~n~~g~~~---~s~~v 228 (1011)
+..-+|. ..++||+|++.+..... .......+| .+...++|.+......| --..+|.+.-..+... .++..
T Consensus 351 vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dG-lFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa 429 (566)
T PHA03269 351 VNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADG-LFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV 429 (566)
T ss_pred eeeecCCCceEEEEEeCCcccCccccccceeecCCC-ceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc
Confidence 8888885 46899999988875221 111223333 45666788874432222 4667999986544432 23455
Q ss_pred EEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCc-cEEEEEeCCccc
Q psy17146 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH-MKYRWYINDQPV 278 (1011)
Q Consensus 229 ~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~-~~i~W~~~~~~l 278 (1011)
.-.|...|.+.+... .|. ..|.+.-.+.. +.+.|+.++.+.
T Consensus 430 tP~VY~~PtISm~Fe------dG~---AVCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 430 TPDVYPFPNVSIEII------DGH---IVCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred CCccccCCeEEEEEe------CCE---EEEecccccCCCceEEEEecCCCC
Confidence 556777777766554 232 34666666543 699999988774
|
|
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=76.79 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=54.5
Q ss_pred EecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccC-----------CCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 40 VVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNL-----------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 40 ~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~-----------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|++|+|+|.... ....+.|+|....+...... ...+|+.+ ..++++|+|.+++.+|+|.|+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~----~~~~~sL~I~~~~~~DsG~Y~ 77 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF----SQNDYSLQISNLKMEDAGSYR 77 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe----cCCceeEEECCCchHHCEEEE
Confidence 47999999999875 23379999875332211110 11135555 234679999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.... + ........|.|
T Consensus 78 c~v~~~~-~--~~~~~~f~L~v 96 (97)
T cd05775 78 AEINTKN-G--VTITKEFTLHI 96 (97)
T ss_pred EEEEcCC-C--CeEEEEEEEEe
Confidence 9998754 2 22345566655
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-06 Score=77.34 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=64.1
Q ss_pred CceeEEecCcEEEEEEEc-C-CCCeeEEeeCCeecCCccc----CCC--CcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 35 QDQTAVVGSRVTLPCRVI-D-KTGVLQWTKDDFALGPHRN----LSG--FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~-~-~~~~v~W~k~~~~l~~~~~----~~~--~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
..++|.+|++|+|.|... + ....+.|+|....+..... +.+ .+|+.+.... ....+|+|.+|+.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s-~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS-FNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC-CCcceEEEEeCChhhCeEEE
Confidence 567899999999999986 3 3568999997543321111 111 1466643322 23468999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~ 131 (1011)
|...--..+ ...+..+.|+|...
T Consensus 102 C~F~tfp~G--~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSK--NNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCC--CCceeEEEEEEEch
Confidence 998754322 14677788888864
|
|
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=74.20 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=57.0
Q ss_pred CcEEEEEEEcCC----CCeeEEeeCCee-----cC---C--c-ccC-CCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 43 SRVTLPCRVIDK----TGVLQWTKDDFA-----LG---P--H-RNL-SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 43 ~~v~L~C~v~~~----~~~v~W~k~~~~-----l~---~--~-~~~-~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|+|+|..... ...+.|+|.... +. . . ... ...+|..+..+...+.++|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 368999999753 238999995422 10 0 0 111 122688887765667889999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.+...+. .+..+.|+|
T Consensus 81 C~v~~~p~g~---~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGN---FEAELVLTV 99 (100)
T ss_pred EEEEeCCCCC---eeeEEEEEe
Confidence 9998744332 366677766
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=74.95 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=55.4
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCC
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED 428 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~ 428 (1011)
..+-+|.|.++..+ |.|.|+|.++...........|.+..+-.+...........-+..++.|...|+|.|.+.|..+.
T Consensus 84 ~gnvsLvI~~l~lS-DdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 84 ANTFFLVVTAANIS-HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeEEEEEEeeeec-CCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 46778999999998 99999999986554444444444444333333322222223567799999999999999999875
Q ss_pred C
Q psy17146 429 S 429 (1011)
Q Consensus 429 ~ 429 (1011)
.
T Consensus 163 ~ 163 (221)
T PHA03376 163 G 163 (221)
T ss_pred C
Confidence 3
|
|
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.7e-07 Score=73.60 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=50.1
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|.......+..+..++|.|.+.+.+.+..++|+ +...... ..... .....+.|.|.++..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~-------~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRG-------SSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE-TEEEEEE-EEEEE-------EEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE-ecCCcee-eeeee-------ccceeeEEEEccCCHHhCcEEEE
Confidence 466665444444444559999999999844499999 1111110 00000 12345899999999999999999
Q ss_pred EEEc
Q psy17146 709 SVSN 712 (1011)
Q Consensus 709 ~a~N 712 (1011)
+|+|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9998
|
... |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-06 Score=74.19 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=52.1
Q ss_pred eeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 37 QTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+.+.+|++|+|.|.+... ...+.|||....-... ......+|+....+ .+.++|+|.+++.+|+|.|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS--GNTASLTISGAQTEDEADY 78 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc--CCEEEEEECCCChhhCEEE
Confidence 367899999999999764 4579999875421110 00111356666443 3678999999999999999
Q ss_pred EEEEEe
Q psy17146 106 QCQVST 111 (1011)
Q Consensus 106 ~C~~~~ 111 (1011)
.|.+.+
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 999875
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=74.15 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=48.1
Q ss_pred cCcEEEEEEEcCC-CCeeEEeeCCeecCCcc------------cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 42 GSRVTLPCRVIDK-TGVLQWTKDDFALGPHR------------NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 42 G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~------------~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
|++|+|.|.+... ...+.|+|......... .-...+|+.+..+ ++|+|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence 8999999998863 34899999874432111 0112256665432 6899999999999999999
Q ss_pred EEeCC
Q psy17146 109 VSTGI 113 (1011)
Q Consensus 109 ~~~~~ 113 (1011)
+....
T Consensus 76 v~~~~ 80 (92)
T cd05741 76 IISTN 80 (92)
T ss_pred EEcCC
Confidence 98754
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.9e-07 Score=73.55 Aligned_cols=68 Identities=29% Similarity=0.575 Sum_probs=53.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEE------ecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWI------HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~------k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+|.+...+.......+. ++|.|.+.+.+ .+.++|+ ...........+.|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46677777666666666 99999999998 8899999 222333445568899999999999999999987
|
... |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=70.19 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCC--eeEEeeC
Q psy17146 436 SPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYR 512 (1011)
Q Consensus 436 ~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~ 512 (1011)
.-.|.|+++...|+|.|+....+... .-....+.+.+...|.-.......+.+|+...-.|.+...-++. .++|+.|
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 34589999999999977665554222 22334555666555555555666778999999999999884444 8999999
Q ss_pred CeEee
Q psy17146 513 GEEIG 517 (1011)
Q Consensus 513 ~~~i~ 517 (1011)
|.++.
T Consensus 286 G~~V~ 290 (490)
T PHA03271 286 GNIAT 290 (490)
T ss_pred Ccccc
Confidence 98774
|
|
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=72.34 Aligned_cols=88 Identities=22% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCceeeecCCcEEEEEEEEecCC---CCeEEEEE---------------CCeEecc---cCCCCeEEecCCcCccceeEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP---PEKVTWSY---------------RGEEIGV---GSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~---p~~v~W~~---------------~g~~l~~---~~~~~~~~~~~~~~~~~~~~L 693 (1011)
+....+..|+.++|.|.+..... ...|+|.+ +|+.... .-.+|..+..+. .....+|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI 82 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI 82 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence 44556889999999999976431 23899943 3333321 112344444332 2345799
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEE
Q psy17146 694 IIRESRHDHFGVYNCSVSNPYGSD--SVEIMLK 724 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~ 724 (1011)
.|.+++.+|.|.|+|.+.|.-+.. ...+.|.
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 999999999999999999988743 3444443
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=69.69 Aligned_cols=82 Identities=24% Similarity=0.219 Sum_probs=55.8
Q ss_pred CcEEEEEEEcCC--CCeeEEeeCCe----ecCCcc---c----CCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 43 SRVTLPCRVIDK--TGVLQWTKDDF----ALGPHR---N----LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 43 ~~v~L~C~v~~~--~~~v~W~k~~~----~l~~~~---~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
++|+|+|..... ...|.|.|... .+.... . -...+|..+.. ...++.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CCCCccEEEEeCCCccccEEEEEEE
Confidence 479999999863 33899988532 111110 0 12235888763 3456789999999999999999999
Q ss_pred EeCCCCCcceeeeEEEEEE
Q psy17146 110 STGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V 128 (1011)
..... +..+..+.|+|
T Consensus 80 ~tfP~---G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPL---GNTQSSTTVTV 95 (96)
T ss_pred EeCCC---CCeeEEEEEEE
Confidence 87543 34566677766
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=73.58 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=58.2
Q ss_pred ecCcEEEEEEEcC-C-------CCeeEEeeCC-----eecC--Ccc------cCCCCcceEEeecC-CCceeEEEEeecc
Q psy17146 41 VGSRVTLPCRVID-K-------TGVLQWTKDD-----FALG--PHR------NLSGFDRYAMIGSD-EEGDYSLEIYPVM 98 (1011)
Q Consensus 41 ~G~~v~L~C~v~~-~-------~~~v~W~k~~-----~~l~--~~~------~~~~~~r~~i~~~~-~~~~~~L~I~~v~ 98 (1011)
.|++|+|+|.+.- + .+.+.|.|.. .... ... .-...+|.++..+. ..++.+|+|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 3889999999763 1 3589999862 1110 000 11223688887644 4578999999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+|+|.|+|.+..+. ...+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~----~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGI----NDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECC----cccEEEEEEEEE
Confidence 999999999998854 224556777765
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=72.33 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEEecC------------CCCeEEEEEC--Ce--E-ecc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 642 PGDTARVECSAFSIP------------PPEKVTWSYR--GE--E-IGV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p------------~p~~v~W~~~--g~--~-l~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.|++|+|.|...... .+ .|.|+|. |+ . +.. .-.+|+.+..... .....+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~-~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~-~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSP-RIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPA-IPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCC-EEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCC-CCCCcEEEE
Confidence 489999999997543 24 8999984 21 1 110 1112444432110 224689999
Q ss_pred cCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 696 RESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+++.+|+|.|.|.+.+....++..+.|.|+
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 9999999999999999888888999888875
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.8e-06 Score=71.99 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=52.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.+...| ...|.+|++|+|.|........+.|+|++........ . .. ......+.+.|.+++.+|+|.|+|
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~-~--~~-----~~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHL-Y--EK-----HHGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceec-c--cc-----cCCeEEEEEEecCCCcccCEEEEE
Confidence 3444444 4578899999999988776668999999865321100 0 00 012234579999999999999999
Q ss_pred EEEe
Q psy17146 108 QVST 111 (1011)
Q Consensus 108 ~~~~ 111 (1011)
....
T Consensus 73 ~~~~ 76 (94)
T cd05711 73 YGSY 76 (94)
T ss_pred EEEC
Confidence 9753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-06 Score=72.64 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc-------------------------eeecCCCcEEEeecCCCCCE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------------------------KVVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~-------------------------~~~~~~~~L~I~~v~~~d~G 604 (1011)
.+.+..+.+|+++.|.|.........++|+|.... .....+++|.|.+++.+|+|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 44556688999999999765444449999996311 11233589999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEE
Q psy17146 605 RYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
.|+|.+.+.........+.|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 999999984334444454444
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=75.23 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred eeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCc-----------c-----cCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 37 QTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPH-----------R-----NLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~-----------~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+.+|++|+|.|.+.. ....+.|||........ . .-...+|+.+........++|+|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 36889999999999865 34479999875431000 0 000135676654445567899999999
Q ss_pred cCCCceEEEEEEe
Q psy17146 99 LDDDARYQCQVST 111 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~ 111 (1011)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=67.84 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=58.5
Q ss_pred CceEecCCCcEEEEeecCCCCCCceEEEeCCCce-----eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 398 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
....+.+|+++.|.|...+. .+.+.|++++..+ .......|.|..++.+|+|.|.|.+.-.|....-..+.+.|
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 45678999999999999865 6799999998754 23345568899999999999999998666555555555554
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=69.04 Aligned_cols=74 Identities=42% Similarity=0.661 Sum_probs=57.8
Q ss_pred CCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+|+.+.|+|.+..++|++.|+|+.++..+.. .........+...+...++|.+.....++...++|.|.+....
T Consensus 13 ~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 13 EGEEVTLTCSSSGGYPPPQITWYLDGGPVVA-SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp STEEEEEEEEEEEEBS-EEEEEEETTCEECE-EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred cceEEEEEEEeCCeECCeEEEEEECCCceee-eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 3789999999899999999999999988822 2222334555667777789999888888899999999998654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=66.80 Aligned_cols=71 Identities=20% Similarity=0.431 Sum_probs=55.4
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|.+.+++|.+.++|+|++..+...... ......+..+...+.|.+.....++...|+|+|.|.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~-~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYL-KEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceee-EeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 6899998888999999999999987543322 2333344577778899998888889999999999876543
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=70.69 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=54.3
Q ss_pred CcEEEEEEEEecC--CCCeEEEEECCeE----ecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 644 DTARVECSAFSIP--PPEKVTWSYRGEE----IGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 644 ~~v~L~C~~~g~p--~p~~v~W~~~g~~----l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
++|+|.|.....+ ....|.|+|.... +.. ....+..+... .....+|+|.+++.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS---SLEDATISISNLRLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC---CCCceEEEEccCCcccCEEE
Confidence 5789999998765 3337999996431 100 00122222211 11357999999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
.|.+.+ ..|...+.+.|.|
T Consensus 78 ~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 78 ICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEEeCCCCcEEEEEEEEe
Confidence 999875 7789999998887
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=71.01 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=58.6
Q ss_pred cCCcEEEEEEEEecCC---------CCeEEEEEC--CeEecc------------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 642 PGDTARVECSAFSIPP---------PEKVTWSYR--GEEIGV------------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~---------p~~v~W~~~--g~~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.|++|+|.|.....+. ...|.|+|. ++.... .-.+|+.+..+. .....++|+|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~-~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP-ENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC-CCCCcEEEEECCC
Confidence 3899999999986542 247999985 222110 111233332211 1234578999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.+|+|.|.|.+....+..++.+.|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 9999999999999987888889988874
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=71.48 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=55.1
Q ss_pred CCcEEEEEEEEecC--CCCeEEEEECCe--Eecc---c----------CCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 643 GDTARVECSAFSIP--PPEKVTWSYRGE--EIGV---G----------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 643 G~~v~L~C~~~g~p--~p~~v~W~~~g~--~l~~---~----------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
|++|+|.|...... ....+.|+|... .+.. + -..|+.+..+.. .....+|+|.+++.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAI-AEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccc-cCCcEEEEEEcCChhhCEE
Confidence 78899999986332 223688988541 1111 0 012333322111 1235789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.+.|..+..++.+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999999888888888876
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=70.35 Aligned_cols=84 Identities=26% Similarity=0.357 Sum_probs=56.2
Q ss_pred cCcEEEEEEEcC-C-----------CCeeEEeeCC-----ee-----cCCc------ccCCCCcceEEeecC-CCceeEE
Q psy17146 42 GSRVTLPCRVID-K-----------TGVLQWTKDD-----FA-----LGPH------RNLSGFDRYAMIGSD-EEGDYSL 92 (1011)
Q Consensus 42 G~~v~L~C~v~~-~-----------~~~v~W~k~~-----~~-----l~~~------~~~~~~~r~~i~~~~-~~~~~~L 92 (1011)
|++|+|+|.+.- + ...|.|++-. .. +... ..-...+|.++..+. ..++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 789999999983 1 1279999751 11 1000 001223588876544 4578899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+|.+++.+|+|.|+|++..+.. .....+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~----~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIE----DTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCc----ccEEEEEEEEE
Confidence 9999999999999999988642 23455666664
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-05 Score=69.39 Aligned_cols=93 Identities=14% Similarity=0.271 Sum_probs=64.8
Q ss_pred EEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCc
Q psy17146 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEH 206 (1011)
Q Consensus 128 V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 206 (1011)
|.++|..+.+..+ ..+...|+.++|.|.+.+.+|. .+++|+||+..+..+.. ......++..+...+.|.+.....+
T Consensus 2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d 79 (111)
T cd05772 2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDD 79 (111)
T ss_pred cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECcccc
Confidence 5677888877654 2344568889999998888895 79999999988754322 1122233346777788988875444
Q ss_pred CCcEEEEEEEeCCCCc
Q psy17146 207 HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 207 d~G~Y~C~a~n~~g~~ 222 (1011)
+.-.|+|.+.+.....
T Consensus 80 ~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 80 VHSQVTCEVQHRTLQA 95 (111)
T ss_pred ccCceEEEEEeCCCCC
Confidence 4456999999976544
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.4e-06 Score=71.33 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=52.2
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..|+.++|.|.+.|. |..+.|+|++||..+..... ........ ......+.|.|......|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~-~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT-TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee-ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999998 66558999999999864221 01111110 01113456777777777999999999998764
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=72.44 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=56.7
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC----------cc---cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP----------HR---NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~----------~~---~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|....+.+|++|+|.|..... ...+.|||....-.. .. .....+|+....+.....+.|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 5678899999999999998753 357999987532110 00 0111257777655545567899999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=72.36 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe--Eec--------------ccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE--EIG--------------VGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~--~l~--------------~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+....+.+|++++|.|.+.+ +.+ .+.|||... .+. .....++..... ......|.|.++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~~ 79 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP---SLTRSSLTIKSA 79 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc---CCCccEEEECCC
Confidence 45667899999999999988 666 899999532 111 011234444332 224578999999
Q ss_pred CCCCCEEEEEEEEcCCC
Q psy17146 699 RHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G 715 (1011)
+.+|+|.|.|.+.+..|
T Consensus 80 ~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 80 EPEDSAVYLCASSLGGG 96 (110)
T ss_pred ChhhCEEEEEEeeCCCC
Confidence 99999999999987644
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=72.23 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe---E---ecc------cCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE---E---IGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~---~---l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
+....+.+|++|+|.|.+.+.+.. .+.|+|... + +.. ....++.+..+. ......|+|.+++.+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~~~~~D 81 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK--SRKSSSLHISAAQLSD 81 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc--cCCEEEEEECCCCHHH
Confidence 446678999999999999987666 899998532 1 100 134556554321 2346899999999999
Q ss_pred CEEEEEEEEcCCC
Q psy17146 703 FGVYNCSVSNPYG 715 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G 715 (1011)
+|.|.|.+.+..+
T Consensus 82 sG~Y~C~~~~~~~ 94 (109)
T cd04983 82 SAVYFCALSESGG 94 (109)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998654
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=70.17 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCc------------------------eeecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSD------------------------KVVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~------------------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|++|+|.|.........+.|+|.... .....+++|+|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 78999999988777779999987522 112235899999999999999999999744
Q ss_pred CCceeeEEEEEE
Q psy17146 615 FPEVGAEATVYL 626 (1011)
Q Consensus 615 ~~~~s~~~~l~V 626 (1011)
.......+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 455666666543
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=67.86 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=54.8
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...+..|++|+|.|.... +.. .+.|+|+|...... ........+..+.+.|..++.+|+|.|+|
T Consensus 1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CCEEEecCCCccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEE
Confidence 46777777788999999999997654 334 79999998763310 00001113446799999999999999999
Q ss_pred EEE
Q psy17146 709 SVS 711 (1011)
Q Consensus 709 ~a~ 711 (1011)
...
T Consensus 73 ~~~ 75 (94)
T cd05711 73 YGS 75 (94)
T ss_pred EEE
Confidence 975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.003 Score=68.15 Aligned_cols=171 Identities=21% Similarity=0.256 Sum_probs=107.9
Q ss_pred eeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEE
Q psy17146 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEI 166 (1011)
Q Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i 166 (1011)
...|+|+.++..++|.|+=+..+.+. ....+..+.++.+.+|. ..+... .+.+|+...-.|.++.-+|. ..+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~--t~~~~~~VtV~~yr~Ps-vsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~ 270 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNG--TLVNSTSVTVSTYNAPL-VDLSVH---PSLKGENYRAVCVVASYFPHSSVKL 270 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCC--ceeeeeEEEEEEecCCc-ccccCC---ccccCCCceEEEEeeeecCCCceEE
Confidence 36799999999999999977655432 23344556666676665 223222 24679999999998888885 468
Q ss_pred EEEeCCceeee-ce-eEEEeeecCCceEEEEEEEEEeec-cCcCCcEEEEEEEeCCCCce--e-EEEEEEEEEeCCceEE
Q psy17146 167 TWIDGTGTVMS-NV-RVTEEASVDGRRTTVKSTLVLTPK-KEHHNTTFTCQAQNTADRTY--K-VARLKLLVKYAPKVQV 240 (1011)
Q Consensus 167 ~W~k~~~~l~~-~~-~~~~~~~~~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~n~~g~~~--~-s~~v~v~v~~~P~~~~ 240 (1011)
+||+|+..+.. .. ........++ .+...++|.+... ..+.--..+|.+.-..+..+ + ++...-.|...|.+.+
T Consensus 271 rWf~dg~~V~~~~~~~~~~~~~~~g-l~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~ 349 (486)
T PHA03273 271 RWYKNAKEVDFTKYVTNASSVWVDG-LITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV 349 (486)
T ss_pred EEEeCCeeccccccceeeEEEecCC-ceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE
Confidence 99999998872 22 2222223333 4566678887764 33555689999986544431 1 3344556666777665
Q ss_pred EecCcceeecCceEEEEEEcccCCC-ccEEEEEeCC
Q psy17146 241 SVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYIND 275 (1011)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~ 275 (1011)
.... |. ..|.+.-.|. .+.+.|+.++
T Consensus 350 ~F~~------G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 350 TVED------GD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEeC------CE---EEEecccccCCCeeEEEEccC
Confidence 5432 22 3465555544 4677777655
|
|
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=67.43 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=54.5
Q ss_pred eecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 144 YTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+.+|+.++|+|.+.+++|.+. |+|||++.++...... ..........++|.+.....+|...|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~----~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFG----DNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceec----cccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 3578999999999999999987 7999999888543211 111223445568888877777777999999987553
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=69.35 Aligned_cols=76 Identities=21% Similarity=0.389 Sum_probs=56.9
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..|+.+.|.|.+.+.+|. +.++|++++..+................+...+.|.|.....+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999995555574 7899999988886654422223334446667788999888888999999999997654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=5e-05 Score=66.40 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=53.3
Q ss_pred cEEEEEEEEecCC---CCeEEEEECC--e--Eeccc-----------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 645 TARVECSAFSIPP---PEKVTWSYRG--E--EIGVG-----------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 645 ~v~L~C~~~g~p~---p~~v~W~~~g--~--~l~~~-----------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.|+|.|.....++ ..+|+|.+.. . .+... -.+|...... ....++|.|.+++.+|+|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~---~~~daSi~i~nl~~~D~G~Y 78 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNP---SFEDGTISLSRLELEDEGVY 78 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCC---CCCcceEEEcCCccccCEEE
Confidence 5899999985332 1269998842 1 11110 1123333211 12357999999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
+|.+.| ..|+.++.+.|+|
T Consensus 79 ~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 79 ICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEEeCCCCCeEEEEEEEE
Confidence 999999 7899999999987
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=66.24 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred CcEEEEEEEcCC--CCeeEEeeCCe----ecCCc-----ccC--CCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 43 SRVTLPCRVIDK--TGVLQWTKDDF----ALGPH-----RNL--SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 43 ~~v~L~C~v~~~--~~~v~W~k~~~----~l~~~-----~~~--~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
++++|.|..... ...+.|.|... .+... ..+ ...+|..+.... ..+.+|+|.||+.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST-REDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC-CCccEEEEcCCCcccCEEEEEEE
Confidence 579999999753 33789998642 11111 011 123688877543 36779999999999999999999
Q ss_pred EeCCC
Q psy17146 110 STGIL 114 (1011)
Q Consensus 110 ~~~~~ 114 (1011)
..-..
T Consensus 80 ~t~P~ 84 (96)
T cd05889 80 VTYPQ 84 (96)
T ss_pred EeCCC
Confidence 87543
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-05 Score=67.05 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=52.9
Q ss_pred cEEEEEEEEecC--CCCeEEEEEC--C-e--Eec---cc--------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 645 TARVECSAFSIP--PPEKVTWSYR--G-E--EIG---VG--------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 645 ~v~L~C~~~g~p--~p~~v~W~~~--g-~--~l~---~~--------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+|+|.|.....+ ....|.|+|. + + .+. .. ..+|..+..+. ....++|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~--~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN--PIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC--CCCceEEEEecCccccceEE
Confidence 689999987554 1227999983 2 1 111 00 01233332211 12357899999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
.|.+.| ..|..++.+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999998 7788888888876
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=69.62 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=54.4
Q ss_pred ecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCC----CCeEEecCCc-----CccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 641 IPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSS----DDYSVLEDPL-----KEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~----~~~~~~~~~~-----~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
..|++|+|.|.... .... .+.|+|....+..... .......... -.....+|+|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 46999999998754 3334 7999997543322111 0000100000 0123578999999999999999999
Q ss_pred EcCCCCe-EEEEEEEe
Q psy17146 711 SNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 711 ~N~~G~~-~~~~~l~V 725 (1011)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9988754 66676665
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=67.76 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCe----Eec-c----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGE----EIG-V----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~----~l~-~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
|++|+|.|..........|.|+|... .+. . .-.+++.+.. .....++|+|.+++.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS---LGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC---CCCCccEEEEeCCceeeeEEEE
Confidence 78999999876554443699998532 111 0 0011222221 1234678999999999999999
Q ss_pred EEEE-cCCCCeEEEEEEEe
Q psy17146 708 CSVS-NPYGSDSVEIMLKP 725 (1011)
Q Consensus 708 C~a~-N~~G~~~~~~~l~V 725 (1011)
|.+. ...|..+..+.|+|
T Consensus 78 C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCCCCCeeeEEEEEE
Confidence 9976 67788888888876
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=70.24 Aligned_cols=92 Identities=20% Similarity=0.377 Sum_probs=53.2
Q ss_pred CCeeeecCCCcEEEEEEccCCCC---CcEEEEEeC---Cce---eee-ce-eE-EEeeecCCceE------EEEEEEEEe
Q psy17146 140 GDTLYTTEDREIELECISANGKP---PAEITWIDG---TGT---VMS-NV-RV-TEEASVDGRRT------TVKSTLVLT 201 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P---~~~i~W~k~---~~~---l~~-~~-~~-~~~~~~~~~~~------~~~~~L~I~ 201 (1011)
++.+++.+|+.++|.|......+ ...|.|++. +.. +.. .. .. .......+|.. ....+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 45778899999999998432222 246999752 111 100 00 00 00001111211 123579999
Q ss_pred eccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 202 ~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
+++.+|+|.|.|.+.|..+.......+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999999876643223444443
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.8e-05 Score=71.24 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--ceeEEEeeecCCceEE-----EEEEEEEeeccCcCCcEEEEE
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMS--NVRVTEEASVDGRRTT-----VKSTLVLTPKKEHHNTTFTCQ 214 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~d~G~Y~C~ 214 (1011)
.+++.+|+++.|.|....+...+.++|+|..+.+.. ...........+|... ..+.|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 567889999999998434656778999997655443 1111111112223322 457899999999999999999
Q ss_pred EEeCCCCceeEEEEEEEEEeC
Q psy17146 215 AQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
..--......+..+-|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 875433323466667776543
|
|
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=6e-05 Score=65.21 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=55.7
Q ss_pred CcEEEEEEEEecCCCCeEEEEECC----eEecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 644 DTARVECSAFSIPPPEKVTWSYRG----EEIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p~~v~W~~~g----~~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
++|+|.|.....+...+|+|.|.. ..+.. .-.+|..+.. .....++|.|.+++.+|+|.|.|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~---~~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN---YSLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC---CCCCccEEEEeCCCccccEEEEE
Confidence 468999998865554489998842 12211 1122333331 12346899999999999999999
Q ss_pred EE-EcCCCCeEEEEEEEe
Q psy17146 709 SV-SNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a-~N~~G~~~~~~~l~V 725 (1011)
.+ ..+.|+.++++.|+|
T Consensus 78 ~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEeCCCCCeeEEEEEEE
Confidence 96 568899999999987
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=69.43 Aligned_cols=92 Identities=17% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCeeeecCCCcEEEEEEccCCCC---CcEEEEEeCCce------eee---ceeEE-EeeecCCceEE------EEEEEEE
Q psy17146 140 GDTLYTTEDREIELECISANGKP---PAEITWIDGTGT------VMS---NVRVT-EEASVDGRRTT------VKSTLVL 200 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P---~~~i~W~k~~~~------l~~---~~~~~-~~~~~~~~~~~------~~~~L~I 200 (1011)
++.+.+.+|+.++|.|......+ ...+.|++.... +.. +.... ......+|... ...+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 45677889999999997433222 256999864320 110 00000 00111122111 1367999
Q ss_pred eeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 201 TPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 201 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.+++.+|+|.|.|.+.|..........+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999999876654333445554
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=63.35 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=65.0
Q ss_pred ecCCeeeecCCCcEEE-EEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEE
Q psy17146 138 VQGDTLYTTEDREIEL-ECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQ 216 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L-~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 216 (1011)
...+.+.+.+|+.+.+ .|.++.|+|+++|+|+.+..... ........++ .+...+.|.+...+.+|.-.++|++.
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ng-T~TV~S~~~l~p~r~d~G~~vtC~V~ 81 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNG-TTTVTSEYIWVPSRHANGHPLTCVVS 81 (97)
T ss_pred CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCC-CEEEEEEEEEEeCHHHCCcEEEEEEe
Confidence 4455777889999999 99999999999999998643321 1222233334 77778899999999999999999999
Q ss_pred eCCCCceeEEEEEE
Q psy17146 217 NTADRTYKVARLKL 230 (1011)
Q Consensus 217 n~~g~~~~s~~v~v 230 (1011)
+..-.........|
T Consensus 82 H~al~~~~~~~~~L 95 (97)
T cd07704 82 HPALQQDFRITHIL 95 (97)
T ss_pred CcccCCCceeeEEe
Confidence 98654433444443
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=68.56 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCceeeecCCcEEEEEEEEecC-CCCeEEEEECC--e---Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRG--E---EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g--~---~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+....+.+|++|+|.|.+.+.. .. .+.|+|.. + .+.. ....++.... ......|+|.+++.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~~~~ 81 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG----SGTDFTLTISRVEPE 81 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEec----cCCEEEEEECCCChH
Confidence 4556789999999999998765 44 79999842 1 1111 1123444422 234568999999999
Q ss_pred CCEEEEEEEEcC
Q psy17146 702 HFGVYNCSVSNP 713 (1011)
Q Consensus 702 d~G~Y~C~a~N~ 713 (1011)
|+|.|.|.+.|.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999999764
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=62.85 Aligned_cols=78 Identities=28% Similarity=0.474 Sum_probs=55.8
Q ss_pred CcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 149 ~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
..+.+.|.+..|+|.++|+|+++.... .........+ ..+...+.|.+.....+|+..|+|++.|..........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~-gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGD-GTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCC-CCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 357899998999999999999973221 1122222233 356677899999988999999999999987655444444
Q ss_pred EE
Q psy17146 229 KL 230 (1011)
Q Consensus 229 ~v 230 (1011)
.|
T Consensus 92 ~l 93 (95)
T cd07703 92 TL 93 (95)
T ss_pred EE
Confidence 44
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=63.58 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=56.8
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
.....+.|.+.+|+|.++|+|+++... ..... ........+...+.|.+.....+|+..|+|++.|..........
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~-~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~ 90 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGG---EAETQ-SKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS 90 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCC---cceeE-eecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 345789999889999999999997211 11121 12222335677789999998999999999999998765545555
Q ss_pred EEEE
Q psy17146 228 LKLL 231 (1011)
Q Consensus 228 v~v~ 231 (1011)
+.|.
T Consensus 91 ~~L~ 94 (95)
T cd05719 91 VTLN 94 (95)
T ss_pred EEee
Confidence 5543
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=65.57 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCcEEEEEEEEecCC------CCeEEEEEC-----CeEe--c----------ccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPP------PEKVTWSYR-----GEEI--G----------VGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~------p~~v~W~~~-----g~~l--~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|+.|+|.|.+.-.|. +..|.|+|. ...+ . ..-.+|..+..+.. .....+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~-~~~~asL~i~nv~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPK-NRYNASLVLSRLR 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCC-CCceEEEEECCCC
Confidence 788999999774332 238999974 1111 1 11223444433211 1236899999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+|+|.|.|.+.......++.+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999977778888888874
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.5e-05 Score=68.64 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=50.4
Q ss_pred eEEecCcEEEEEEEcCC-CCeeEEeeCCee--cC--------Cc-c-----cCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 38 TAVVGSRVTLPCRVIDK-TGVLQWTKDDFA--LG--------PH-R-----NLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~--l~--------~~-~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.+.+|++|+|.|.+... ...+.|+|.... -. .. . ......|+.... ....++|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 46799999999998654 457999987643 11 00 0 001124565533 336789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999863
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-05 Score=66.83 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=58.1
Q ss_pred eecCCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 144 YTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
...+++.++|.|.+.+.+| ..+++|+||+..+..+..........+..+...+.|.+......+...|+|++.+.....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~ 92 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS 92 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence 3446788999999777788 678999999988865433322233334467777889998877778899999999976543
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=60.86 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred EEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 151 IELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 151 v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++|.|.+.+.+|+ ..++|+||+..+..+..........+..+...+.|.|.....++...|+|.+.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899997777787 699999998875554333222223344677778899988888889999999998643
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.1e-05 Score=65.57 Aligned_cols=66 Identities=26% Similarity=0.371 Sum_probs=46.9
Q ss_pred cEEEEEEEcCCCC---eeEEeeCCeecC-----Cc----ccC---CCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 44 RVTLPCRVIDKTG---VLQWTKDDFALG-----PH----RNL---SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 44 ~v~L~C~v~~~~~---~v~W~k~~~~l~-----~~----~~~---~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+|+|+|.+..... .+.|++...... .. ... ...+|+.+......+.++|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4899999987432 799998653110 00 000 22368887766557889999999999999999996
Q ss_pred E
Q psy17146 109 V 109 (1011)
Q Consensus 109 ~ 109 (1011)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
|
|
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.9e-05 Score=67.64 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=53.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCe-----Eec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGE-----EIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~-----~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.+.+|++++|.|.+.+. +.. .+.|+|... .+. .....++.+..+. .....+|+|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS--SKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec--cCCEEEEEECCCCHHH
Confidence 46789999999999976 445 899998532 111 1123445444321 1246799999999999
Q ss_pred CEEEEEEEEcCCC
Q psy17146 703 FGVYNCSVSNPYG 715 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G 715 (1011)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998876
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=62.29 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=45.2
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|.|.+.+. |.+ .|+|+++|+++... .......+.......+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGV--KLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCc--eeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 6899999876 777 99999999998631 111111110001134566666555566679999999988753
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=63.36 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCcEEEEEEEEecCC----------CCeEEEEEC-----Ce-----Eecc----------cCCCCeEEecCCcCccceeE
Q psy17146 643 GDTARVECSAFSIPP----------PEKVTWSYR-----GE-----EIGV----------GSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~----------p~~v~W~~~-----g~-----~l~~----------~~~~~~~~~~~~~~~~~~~~ 692 (1011)
|.+++|.|.+.-.|. ...|.|++- |+ .+-. ...+|..+..+... ....+
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~-~g~as 80 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPED-QGDAS 80 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCc-CCceE
Confidence 678999999986542 237999873 11 1111 11234444332211 13589
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.+++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999999999999999999999999885
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=67.26 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=52.9
Q ss_pred CCceeeecCCcEEEEEEEEe--cCCCCeEEEEEC--CeEe----cc-----------cCCCCeEEecCCcCccceeEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFS--IPPPEKVTWSYR--GEEI----GV-----------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g--~p~p~~v~W~~~--g~~l----~~-----------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
+....+.+|++|+|.|.+.+ .+.+ .+.|+|. |... .. ....++.+..+. ......|+|
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I 81 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV--GKSTSTLTI 81 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC--CCCEEEEEE
Confidence 34556889999999999987 5666 8999995 2211 00 113455544320 114678999
Q ss_pred cCCCCCCCEEEEEEEEcC
Q psy17146 696 RESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+++.+|+|.|.|.+...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999998643
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=64.71 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.1
Q ss_pred eeecCCcEEEEEEEEec--CCCCeEEEEECCe--Ee---cc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 639 FGIPGDTARVECSAFSI--PPPEKVTWSYRGE--EI---GV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~--~l---~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.+.+|++|+|.|.+.+. ... .+.||+... .. .. ....++.... ......|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK----SGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCChhhCE
Confidence 46789999999998765 344 699998422 11 10 1123455433 234678999999999999
Q ss_pred EEEEEEEcC
Q psy17146 705 VYNCSVSNP 713 (1011)
Q Consensus 705 ~Y~C~a~N~ 713 (1011)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998764
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=65.85 Aligned_cols=78 Identities=21% Similarity=0.408 Sum_probs=56.4
Q ss_pred cCCceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCc-----ee---------------------e----cCCCcEEEee
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSD-----KV---------------------V----GNSPNLTLLM 597 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~-----~~---------------------~----~~~~~L~I~~ 597 (1011)
..|..+.+.+|+++.|.|... ......+.|++.... +. . ....+|+|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346678899999999999999 456669999985431 11 0 0124699999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.+|+|.|.|.+...........+.|.|
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999743344444555544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=58.10 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC-eEEEEEE
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS-DSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l 723 (1011)
+.|.|.+.|. |.+ .|+|+++|+++... ... ...........++|.|..-..+|...|+|.|.|..-. ......|
T Consensus 2 ~~L~C~s~gSkP~A-~I~W~k~~~~l~~~--~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAA-TIRWFKGNKELTGK--STV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCC-EEEEEECCEECcCc--ccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 6899999876 555 99999999999742 111 0011011224678888665555555999999997642 3444444
Q ss_pred Ee
Q psy17146 724 KP 725 (1011)
Q Consensus 724 ~V 725 (1011)
.|
T Consensus 78 ~V 79 (82)
T cd05883 78 EV 79 (82)
T ss_pred EE
Confidence 44
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=62.18 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=52.7
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC--CCe--eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK--TGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~--v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+.+.+....+.+|+.++|.|.+.+. .+. |.|||++..+........ ..+......+|++..-+.+|...
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~------~~~~~~~~stlt~~~~r~D~g~~ 76 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN------TKSPVNAPATITITVDREDHGAN 76 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc------cCCCceeEEEEEEecchhhCCcE
Confidence 46677777788999999999999984 334 799999988743211100 01112234467776555445559
Q ss_pred EEEEEEeCC
Q psy17146 105 YQCQVSTGI 113 (1011)
Q Consensus 105 Y~C~~~~~~ 113 (1011)
|+|+|.+..
T Consensus 77 ~sC~A~l~l 85 (100)
T cd05755 77 FSCETELDL 85 (100)
T ss_pred EEEEEEecc
Confidence 999998853
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.072 Score=56.35 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCcccccCCcEEEEEEeec--CCCccEEEEEECCeecCCC-------------------------------cCccEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEA--NPSHMKYRWYINDQPVPAA-------------------------------ASATELYLT 357 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~--~p~~~~i~W~k~g~~l~~~-------------------------------~~~~~L~I~ 357 (1011)
.+..+..|..+.|.|.... +..-..+.|+-.|-++... -..++|.|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3456677999999998764 3222378998776665421 124789999
Q ss_pred ecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCC-cEEEEeecCCC--CCCceEEEeCC
Q psy17146 358 NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA-GVNLLCDVDGN--PAPEITWIHED 428 (1011)
Q Consensus 358 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~-~v~l~C~~~g~--p~p~v~W~k~~ 428 (1011)
++..+ .+|-|.|+|....-..+...-|.|...-.|.. ..+|. .-...|.+-.. -++++.|.-+|
T Consensus 352 ka~I~-N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG 418 (500)
T PHA02914 352 KAHIN-NAGCYEAQAFMGKFKEECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNG 418 (500)
T ss_pred eEEEE-cCCceEEEEecCcchhhhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEcc
Confidence 99998 99999999976533333333344433222221 12333 34677988443 35579998876
|
|
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=60.48 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=51.7
Q ss_pred CcEEEEEEEEecCCCCeEEEEECCe----Eecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 644 DTARVECSAFSIPPPEKVTWSYRGE----EIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p~~v~W~~~g~----~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.++|.|.....-...+|+|.|... .+.. .-.+|...... ....++|+|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~---~~~d~sI~i~nvt~~D~G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS---TREDMSLSFNNATEEDVGLYCC 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC---CCCccEEEEcCCCcccCEEEEE
Confidence 4689999986433333789998532 2211 11133333321 1235899999999999999999
Q ss_pred EEEc-CCCCeEEEEEEE
Q psy17146 709 SVSN-PYGSDSVEIMLK 724 (1011)
Q Consensus 709 ~a~N-~~G~~~~~~~l~ 724 (1011)
.+.+ +.|+.++.|.|.
T Consensus 78 ~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 78 SLVTYPQGSWEKVIEVV 94 (96)
T ss_pred EEEeCCCCCeEEEEEEE
Confidence 9876 478888888763
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0004 Score=62.11 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=48.1
Q ss_pred eeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE-EEEEEEEcCCC
Q psy17146 638 QFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNPYG 715 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~~G 715 (1011)
.....|+.++|.|.+.|+ |..+.++|+|||+.+.... .......+.......+.|.+.. ...|.| .|+|.+.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 345578889999999987 6556999999999986321 1111111100111345676665 344444 59999998754
Q ss_pred C
Q psy17146 716 S 716 (1011)
Q Consensus 716 ~ 716 (1011)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 3
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=61.45 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++.++|.|.+.|. |..+.|+|++||..+..+.........+.......+.|.|..-...+...|+|.+.......+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45679999999996 777799999999987421111011111101112345677775555566799999998765433
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00024 Score=61.54 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=54.0
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.++.+.|.|.+.+.+|. .+++|+|++..+..+..........+..+...+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35668999997777886 7899999988764432222222233337777888988877667889999999987554
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0003 Score=61.16 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCcEEEEEEEEec-CCCCeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSI-PPPEKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|+ |.++.++|+++|+.+..+. ...+....+ ......+.|.|.. .+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d-~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGD-GTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCC-CeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 7889999999996 6667899999997433211 111111110 0011234555544 477899999987754
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00043 Score=58.54 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=45.8
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcC--ccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK--EGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|+|.+.|. |.+ .|+|++||+++... . ..+..+... ....+.|.|......|...|+|.|.|.....
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~--~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGA--P-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCc--c-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999987 777 99999999988632 1 122222111 0123567766656667779999999987643
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=62.74 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....++.++|.|.+.|. |..+.|+|++||+++..+....-...+........+.|.+......+...|+|.|....-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 34467889999999986 667799999999998532110000111100111245676766555556799999987653
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=57.87 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=43.7
Q ss_pred cEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEe-cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVL-EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++|.|.+.|. |..+.++|+|||+++..+. ...... +........+.|.|......+...|+|.|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~-~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGV-STTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCE-EECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999997 6656999999999754211 111111 110011135677776666667779999998764
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00045 Score=60.80 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=59.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---C-CeeEEeeCCeec-------CCcc-cC-CCCcceEEeecCCCceeEEEEeecc
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---T-GVLQWTKDDFAL-------GPHR-NL-SGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~-~~v~W~k~~~~l-------~~~~-~~-~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+++....+..|+.|+|.|.+++. . ..+.|+|..... .... .. ....|+.+.++......+|+|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 45567788999999999999773 2 378999874331 0111 11 2347888888888899999999999
Q ss_pred cCCCceEEEEEE
Q psy17146 99 LDDDARYQCQVS 110 (1011)
Q Consensus 99 ~~D~G~Y~C~~~ 110 (1011)
.+|++.|.|...
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999764
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00081 Score=57.89 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+..|+..+|.|.+.|+ |..+.++|+|||+++. +... -.+..+ .++. .+.|.+. +.+...|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~-~~~~p~--~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQ-SDLSFS--KDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEE-CcEEEC--CCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 3456777999999995 7777999999999876 2211 111111 1222 3344444 456668999998753
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00047 Score=60.81 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=51.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCeE-----e------cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGEE-----I------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~-----l------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+.+|++|+|.|..... ... .+.|+|.... + ......++.+..+. ......|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSY-EKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCc-EeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEE
Confidence 57899999999998753 334 7899985421 1 01123456554321 23467899999999999999
Q ss_pred EEEEEcCC
Q psy17146 707 NCSVSNPY 714 (1011)
Q Consensus 707 ~C~a~N~~ 714 (1011)
.|.+.+..
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99987754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=59.11 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|.|.+.|.-++..|+|+|||+.+... ......... ......+.|.|......+...|+|.|.|..-..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~--~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDV--KYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCc--eeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 6899999986444599999999997531 111111110 001235677777655666669999999887543
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00072 Score=58.42 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=43.0
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
..|+.++|.|.+.|+ |..+.++|++||.++..+.. .......+ ......+.|.+.. .+...|+|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~D-gty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQD-LSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCC-CcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 346668999999996 77779999999998753210 11111110 0011234566654 34558999998754
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00092 Score=55.38 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=48.8
Q ss_pred ceEecCCCcEEEEeecCCCC--CCceEEEeCCCcee---eccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 399 SVQVDRGAGVNLLCDVDGNP--APEITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p--~p~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
+..+..|++++|+|.....+ .+.|+|+..+.... ..+...|.+..++..|+|.++|.+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE
Confidence 34688899999999995544 45999998876643 23567899999999999999999974
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=62.87 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
+....+.+|++|+|.|..........+.|+|. +..+. ....+|+.+..+. ......|+|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQK--AQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEec--cCCEEEEEECCCCHHH
Confidence 44567899999999999876433337999983 22111 0123456554211 2235789999999999
Q ss_pred CEEEEEEEEcC
Q psy17146 703 FGVYNCSVSNP 713 (1011)
Q Consensus 703 ~G~Y~C~a~N~ 713 (1011)
+|.|.|.+.+.
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=57.59 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=44.7
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..|+.++|.|.+.|+ |..+.++|++||+.+..+.. ......+ .++. .+.|.+. ..+...|+|.+......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~~--~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIPN--GDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEEC--CCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 467889999999996 76778999999998764210 0111111 1222 3445443 34556899999876543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00082 Score=58.20 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=45.7
Q ss_pred cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.......++.++|.|.+.|+ |..+.++|++||..+..+.. ......+.......+.|.|..-.. ...|+|.+..
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~-~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H 83 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQ-KSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKH 83 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeE-eccEecCCCEEEEEEEEEECchhC--CCeEEEEEEE
Confidence 3443444456789999999995 77778999999998753211 011111100111245666654332 2359999987
Q ss_pred C
Q psy17146 713 P 713 (1011)
Q Consensus 713 ~ 713 (1011)
.
T Consensus 84 ~ 84 (96)
T cd07697 84 E 84 (96)
T ss_pred C
Confidence 4
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=56.42 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+|+.++|.|.+.+.+|.. +++|+||+..+..+.............+...+.|.+.. .+...|+|++.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCCC
Confidence 3578899999977778865 89999999887664222222222223566667777654 46779999999976543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00092 Score=58.12 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=52.6
Q ss_pred ecCCCcEEEEEEccCC-CC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 145 TTEDREIELECISANG-KP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g-~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+..|+.++|.|.+.+. +| ...++|+|++++..... ........+..+...+.|.+......+.-.|+|.+.+.....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 4458899999996666 56 45899999876543321 111122233367777889888766667789999999976543
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=57.06 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=47.8
Q ss_pred CCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 148 DREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
|+.++|.|.+.+.+|.. .++|+|+++.+..+..........+..+...+.|.|.. .+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence 67899999955556764 89999998644333222212222333566667788755 3889999999987553
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=54.75 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=54.1
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCcee---ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+-.+..|++++|.|.....+.| .|+|+..+.... ..+..+|.+.++...|+|.++|.+.- ........+.+.|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~-~~k~~~~~~~V~V 85 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV-NSSEKTLKLDIKV 85 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE-CceEEEEEeeEEE
Confidence 3468899999999999665554 999998776533 34668999999999999999999974 2233344444444
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0045 Score=75.34 Aligned_cols=135 Identities=12% Similarity=0.078 Sum_probs=88.5
Q ss_pred ccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeec
Q psy17146 266 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 345 (1011)
Q Consensus 266 ~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l 345 (1011)
.....|+.+|..+..... .......++....+.|.....+.+ .+.|+.++...
T Consensus 218 ~~~~~~~~~g~~i~~~~~--------------------------~~~s~t~e~s~~~i~~~l~~~~G~-~~~~~~~~l~e 270 (1205)
T KOG0613|consen 218 EPLERWEILGELIAPGSA--------------------------PSMSVTLEASDRKIQLTLRAPRGP-YSAHILGYLIE 270 (1205)
T ss_pred ccchhhhhcccccCCCCc--------------------------cccccccchhheeeeEEeecCCCc-hHHHHhcchhh
Confidence 368899999988776542 122345677788899999988876 77887776554
Q ss_pred CCC-cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe----------------cceEe---eCCCceEecCC
Q psy17146 346 PAA-ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY----------------GPRFR---ARPYSVQVDRG 405 (1011)
Q Consensus 346 ~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~----------------~P~~~---~~p~~~~v~~G 405 (1011)
... .....+.|.+.... +.+.|+|...+..+.....+...+.. +|... .....+.+..+
T Consensus 271 ~~~~~~~~t~~i~~~~~~-~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~ 349 (1205)
T KOG0613|consen 271 QRKHKGGNTKTIQNDGPE-PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDN 349 (1205)
T ss_pred hcccCCCccccccccCCc-cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccC
Confidence 443 34556667776666 77889999888777665444333322 11111 11223455666
Q ss_pred CcEEEEeecCCCCCCc-eEEEeCC
Q psy17146 406 AGVNLLCDVDGNPAPE-ITWIHED 428 (1011)
Q Consensus 406 ~~v~l~C~~~g~p~p~-v~W~k~~ 428 (1011)
..+.+.|...+.+.+. +.|++..
T Consensus 350 ~~v~m~~~~~~~~~p~~~~~~~~~ 373 (1205)
T KOG0613|consen 350 TLVEMPTALSGTQKPDEAQGYHGE 373 (1205)
T ss_pred cceeecccccCCcCCchheeeccc
Confidence 7788888888887775 8888765
|
|
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00072 Score=60.69 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=56.3
Q ss_pred eecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEE-EeeecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCC
Q psy17146 144 YTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVT-EEASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTAD 220 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g 220 (1011)
++.+++.+.|.|.+.+.+|. .+++|+||+..+..+.... .....++..+...+.|.|...+..+ ...|+|.+.+...
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 34457789999997777887 5899999998876543211 1222222477778899998776544 7899999999865
Q ss_pred Cc
Q psy17146 221 RT 222 (1011)
Q Consensus 221 ~~ 222 (1011)
..
T Consensus 94 ~~ 95 (115)
T cd05769 94 TD 95 (115)
T ss_pred cc
Confidence 44
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=53.90 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=47.7
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
+.|.|.+.+.+.. .+.|++++......... ..............|.|.++...|.|.|.|.+.+..+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence 4789999985555 89999998776532211 011111112346789999999999999999999887433
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00078 Score=60.43 Aligned_cols=72 Identities=17% Similarity=0.345 Sum_probs=47.6
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeE-----ec----cc-----------CCCCeEEecCCcCccceeEEEEcCC
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEE-----IG----VG-----------SSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-----l~----~~-----------~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.+|++|+|.|.+.+......+.|||.... +. .. ...++.+... .......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVT--SDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEE--CCCCEEEEEECCC
Confidence 4778999999999877544327999984321 00 00 0223433211 1233568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=55.04 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=49.2
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++.+.|.|.+.+.+|. ..++|+||+..+..+.............+...+.|.+.. ++...|+|.+.+...
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 5668999997777884 689999999887654433322333333566667787754 467799999998754
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=54.93 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=54.9
Q ss_pred CCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 147 EDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.++.+.|.|.+.+.+|.. +|+|++++..+..+..........+..+...+.|.+. ..+...|+|++.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 488999999977778854 8999999988866554443343345577777888887 567779999999986543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0006 Score=60.15 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=46.1
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+..|+.++|.|.+.|+ |..+.++|++||+++............+...++ ..+.|.|..-...+...|+|.|....-
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4457889999999996 666689999999987532111111111100012 245666654444455689999987543
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=59.48 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCC-eEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGS 716 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~ 716 (1011)
...++.++|.|.+.|+ |..+.|+|++||+.+..+.... .....+.......+.|.|......+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4456789999999987 6667999999999876422111 1111110011135677777655434 45899999987665
Q ss_pred eEEE
Q psy17146 717 DSVE 720 (1011)
Q Consensus 717 ~~~~ 720 (1011)
....
T Consensus 95 ~~~~ 98 (115)
T cd05769 95 DTDK 98 (115)
T ss_pred ccee
Confidence 5443
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=59.39 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=51.2
Q ss_pred cCCceeeecCCcEEEEEEEEecC-----CCCeEEEEECCe-----E-ecc---------cCCCCeEEecCCcCccceeEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIP-----PPEKVTWSYRGE-----E-IGV---------GSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p-----~p~~v~W~~~g~-----~-l~~---------~~~~~~~~~~~~~~~~~~~~L 693 (1011)
.|....+.+|+.|+|.|...... ....+.|+|... . +.. ...+|+.+..+ .......|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~sL 82 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD--LGKKNCSL 82 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC--CCCCEEEE
Confidence 34556789999999999875332 122689998531 1 110 01234444321 13346789
Q ss_pred EEcCCCCCCCEEEEEEEEcC
Q psy17146 694 IIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+|.+++.+|+|.|.|.+...
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 83 LISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEccCChhhCeEEEEEEEcC
Confidence 99999999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=57.27 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCceeeecCCcEEEEEEEEec--CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
|....+..|+.++|.|.+.|. |..+.++|+|||........... ..+........+.|.+..-...+.-.|+|.+..
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~-~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPP-ESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEeccc-ccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 333446678999999999999 77778999999754321111111 111100011234566655443334489999987
Q ss_pred CCCC
Q psy17146 713 PYGS 716 (1011)
Q Consensus 713 ~~G~ 716 (1011)
..-.
T Consensus 85 ~~l~ 88 (96)
T cd07696 85 PDLP 88 (96)
T ss_pred CCCC
Confidence 7543
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00099 Score=58.77 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=52.5
Q ss_pred ecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecC---CceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 145 TTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVD---GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+..|+.++|.|.+.+.+|.. .++|+||+.++............+ ...+...+.|.|..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 34578899999977777854 789999998765432111111111 24666678898876666677889999998755
Q ss_pred C
Q psy17146 221 R 221 (1011)
Q Consensus 221 ~ 221 (1011)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=56.46 Aligned_cols=86 Identities=28% Similarity=0.441 Sum_probs=50.7
Q ss_pred CeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|..........|+.+.|+|.+. |.|.| .|+|+.++..+.. .................+.|.+..-...+...++|
T Consensus 1 p~I~~~~~~~~~~~~~~~~~C~s~~~~P~~-~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C 78 (89)
T PF08205_consen 1 PEITPNPSLLEGEGEEVTLTCSSSGGYPPP-QITWYLDGGPVVA-SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTC 78 (89)
T ss_dssp EEEEEECSEEESSTEEEEEEEEEEEEBS-E-EEEEEETTCEECE-EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEE
T ss_pred CEeeCCCeeEcccceEEEEEEEeCCeECCe-EEEEEECCCceee-eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEE
Confidence 344433333333378999999665 66888 9999999988721 00111111110011124678877655566779999
Q ss_pred EEEcCCCCe
Q psy17146 709 SVSNPYGSD 717 (1011)
Q Consensus 709 ~a~N~~G~~ 717 (1011)
.|.|..-..
T Consensus 79 ~~~~~~~~~ 87 (89)
T PF08205_consen 79 RASHPALSQ 87 (89)
T ss_dssp EEEETTCCE
T ss_pred EEECCccCC
Confidence 999987544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0032 Score=54.22 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.|+...|.|.+.+.+| ...++|+|||..+. +..........+..+...+.|.+. ..+...|+|++.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l 84 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM 84 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence 4667799999777688 46899999999876 444333333333466666777775 4688889999999654
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00095 Score=59.42 Aligned_cols=69 Identities=17% Similarity=0.398 Sum_probs=46.4
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCe----E---ec-ccC------------CCCeEEecCCcCccceeEEEEcCC
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGE----E---IG-VGS------------SDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~----~---l~-~~~------------~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.+|++|+|.|.+...... .+.|+|... . |. ... ..++.... ......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~ 76 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR----SSNSFVLTLKNF 76 (104)
T ss_pred cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe----cCCEEEEEECCC
Confidence 36789999999998655444 699998432 1 11 000 12233222 224568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|.+.+
T Consensus 77 ~~sDsgtY~Ca~~~ 90 (104)
T cd05720 77 QKENEGYYFCSVAS 90 (104)
T ss_pred CHHHCEEEEEEEcc
Confidence 99999999998764
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=55.56 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=50.6
Q ss_pred eecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 144 YTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
++..++.+.|.|.+.+.+|. .+++|+|||..+..+.........++ .+...+.|.|.... ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 33346779999997777884 57899999988765544333333333 77777888886543 3455999999854
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=55.59 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=45.7
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.++.++|.|.+.|+ |..+.|+|++||..+............ .++ ..+.|.+. ..+...|+|.+......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~---~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPN---SDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEE---TTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccc---cccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999986 667789999999988642111111111 122 24566666 45555899999887654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=58.79 Aligned_cols=75 Identities=17% Similarity=0.355 Sum_probs=49.5
Q ss_pred CCceeeecCCcEEEEEEEEecC--CCCeEEEEECC---eE--ec-c-----------cCCCCeEEecCCcCccceeEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP--PPEKVTWSYRG---EE--IG-V-----------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~g---~~--l~-~-----------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
+....+.+|++|+|.|...+.. .. .+.|||.. .+ |. . ...+++....+ .......|+|
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I 80 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD--TSKSTVYLQL 80 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE--ccCCEEEEEE
Confidence 4566789999999999986543 34 69999832 11 10 0 01234444321 0122357999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|+|.|.|.+..
T Consensus 81 ~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 81 NSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCCHHHCEEEEEEEEc
Confidence 99999999999998875
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0025 Score=51.53 Aligned_cols=66 Identities=30% Similarity=0.546 Sum_probs=46.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.|.|. ..+.+...+.|++++......... ..............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCL-ASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEE-ecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999 445788899999987655432221 111222344556789999999999999999998875
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0052 Score=53.31 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=43.2
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++||+. ..+....-.+..+.......+.|.+........-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999996 77779999999998 32110001111110011124566666544323457999998764
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=49.61 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 558 RGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
..+.|.|.|.. ...|.|++ |..+...+..+|.+-....+-.|.|+|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 35679999965 25699999 6666555588999999999999999999876
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=75.60 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCC-CCCCCcccccccccccccc-cCCCCC--CCCcCcceeeecCcc------------------------------ccc
Q psy17146 760 KKP-PPGNGIEHHVTADGEKNQC-KESDNS--SNISDIKLEFRTGSS------------------------------VSN 805 (1011)
Q Consensus 760 ~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~--s~I~~Y~ve~~~~~~------------------------------~p~ 805 (1011)
.|| +|.++... +..+++.|.| ++.|.| ..|+..++-.+.... .|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 455 88888777 8899999999 666654 356655554443311 777
Q ss_pred ccccc---c-CCCCCCC-------cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeec
Q psy17146 806 VHLDY---A-GHDSETG-------SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRD 874 (1011)
Q Consensus 806 ~~Y~f---A-~G~g~~s-------s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~ 874 (1011)
+.|.| | .|.|.-+ +..+.|..++|+.-+.--.... +.++.+++|.. ++..||.++-|.|.|++
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~----~~~sitlsW~~--p~~png~ildYEvky~e 482 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSR----TSDSITLSWSE--PDQPNGVILDYEVKYYE 482 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeee----ccCceEEecCC--CCCCCCcceeEEEEEee
Confidence 89999 6 6655544 4457777777765443222222 34455779998 67789999999999999
Q ss_pred cCCCC
Q psy17146 875 YNQTL 879 (1011)
Q Consensus 875 ~~~~~ 879 (1011)
++..+
T Consensus 483 k~~~e 487 (996)
T KOG0196|consen 483 KDEDE 487 (996)
T ss_pred ccccc
Confidence 97643
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00043 Score=78.52 Aligned_cols=187 Identities=17% Similarity=0.289 Sum_probs=107.6
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
..|.|..+|++..+..|.++.|.|..... ...-.|..+.........-....+-. ....+.|..-..+
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~-------~~~si~Isr~~v~ 95 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV-------REVSIDISRQQVE 95 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE-------Eeeeeeeehhhhh
Confidence 35889999999999999999999998752 12345766543321111100001111 1113445544444
Q ss_pred CCc---eEEEEE--EeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 101 DDA---RYQCQV--STGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 101 D~G---~Y~C~~--~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+.| .|.|+- .... + ...+..+.+.+.+. .......+.-..|.++..+.+.|+...+.|...++|+|++..+
T Consensus 96 ~~~~~~d~~cQc~a~~~~-g--~~~s~~a~vr~ay~-rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~ 171 (909)
T KOG1480|consen 96 TSGGPEDYWCQCVAWSDD-G--TVKSRKATVRIAYL-RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI 171 (909)
T ss_pred cccCccceeeeeeeecCC-C--cchhhhHHHHHHHH-HHhhccChhhheecccccccccccCcccchhhhhhccccCCCC
Confidence 432 566654 3321 1 11122122111110 0111112223456778899999998899999999999987766
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEEEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKLLV 232 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v~v 232 (1011)
.+.... .... ...|+|..+...|.|.|+|+|.|..+.. ...+.+.+.|
T Consensus 172 ~pd~n~--~~~~-------d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 172 DPDANV--IRAS-------DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred Cccccc--hhhh-------cCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 542221 1111 2479999999999999999999987754 2333444443
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.24 Score=48.95 Aligned_cols=125 Identities=22% Similarity=0.301 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 620 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 620 ~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.+.-.|..+|.|.. ....| ...|.+.-.|.. ..+.|+-++.... .......... . ...-+...|++.
T Consensus 73 a~~~P~Vy~~P~vsv----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~--~~~~~~~~g~-C-~~~pglvnirs~ 141 (211)
T PF02124_consen 73 ATATPSVYPKPRVSV----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSP--APAATEITGV-C-AEHPGLVNIRSR 141 (211)
T ss_pred cccccceecCCEEEE----EecCC---EEEEEcceeeCCCeEEEEEECCccCC--CCCceeecCc-c-cCCcceeEeecc
Confidence 334444556666542 12222 567888888864 5899998877642 1111111111 0 011223333333
Q ss_pred C--CCCCE--EEEEEEEc-CCCCe--EEEEEEEecC---CCCeEEEEEeeehHHHHHHHhhhheeee
Q psy17146 699 R--HDHFG--VYNCSVSN-PYGSD--SVEIMLKPQK---SFPLLLILTGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 699 ~--~~d~G--~Y~C~a~N-~~G~~--~~~~~l~V~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1011)
- ....| +|+|.+.- ..+-. +.+....-.. ..++++.+++++++++++.+++++..+|
T Consensus 142 ~pls~~~~~~~YtC~l~GYP~~~p~f~~~~~yDasP~~~~~p~v~~i~~Vi~g~~~~g~~~~i~alc 208 (211)
T PF02124_consen 142 RPLSDEDGPVEYTCRLIGYPDILPVFEDTATYDASPSAQGFPMVISIIGVICGAGALGLLVLIAALC 208 (211)
T ss_pred cCCCccCCceeEEEEEeeCCCCCCcccceEEEcCCCccCCCcEEEehHHHHHHHHHHHHHHhhEEEE
Confidence 2 22345 89999862 11111 2222221111 1344555556666666666555544444
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0003 Score=60.04 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G 813 (1011)
++|.++.+.+++.+++.++| ++.++++++.+|.|+++...+ .|.+.|.| | .|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 36788999999999999999 554889999999999987644 78889999 3 66
Q ss_pred CCCCC
Q psy17146 814 DSETG 818 (1011)
Q Consensus 814 ~g~~s 818 (1011)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 66553
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0073 Score=51.58 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=50.1
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEE
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 211 (1011)
++.|.....+ .+|..++++|.+.+.+|. .++.|+|++..+.... +......+. .......++|.....+|.-.|
T Consensus 3 ~p~i~~~~~l--~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks-~~~~~~~vtftptreD~g~~f 78 (99)
T cd07689 3 DPEILLSGPL--EEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKS-LETKSLEVTFTPTIEDIGKVL 78 (99)
T ss_pred CccCcccCcc--cCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCC-CCCcceeEEEecchhhCCcEE
Confidence 3444444443 579999999998888887 7899999766554422 211110011 111224566666555555589
Q ss_pred EEEEEeCCC
Q psy17146 212 TCQAQNTAD 220 (1011)
Q Consensus 212 ~C~a~n~~g 220 (1011)
+|+|.-..+
T Consensus 79 sC~A~L~l~ 87 (99)
T cd07689 79 VCRAKLHID 87 (99)
T ss_pred EEEEEEeec
Confidence 999986543
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00047 Score=78.22 Aligned_cols=175 Identities=18% Similarity=0.248 Sum_probs=110.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCC----eEEEEecCCceeecCC----------CcEEEeecCCCCC---EEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNS----------PNLTLLMTSDDLA---GRY 606 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p----~v~W~k~~~~~~~~~~----------~~L~I~~v~~~d~---G~Y 606 (1011)
-|.|...|.+..+..|..+.|.|.+...+.. .-.|..+......... -...|.....++. -.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 4678888999999999999999998776654 4458877655432211 1223332222222 235
Q ss_pred E--EEEEecCCCceeeEEEEE--EcCCCeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 607 Y--CKASVMGFPEVGAEATVY--LKGRPTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 607 ~--C~a~n~~~~~~s~~~~l~--V~~~P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
+ |.|....+...+..+.+. +..+-....+.-+.|..+..+.+.|.. .+.|.. .++|+|++..++. ..++...
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~~~p--d~n~~~~ 180 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVVIDP--DANVIRA 180 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhh-hhhccccCCCCCc--cccchhh
Confidence 4 455542221112111111 111222223445667788888999865 577777 8999999998875 3333333
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC---eEEEEEEEecCC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS---DSVEIMLKPQKS 728 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~---~~~~~~l~V~~~ 728 (1011)
. ...|.+..+...|.|+|+|+|.|-.+. ..+.+.+.|...
T Consensus 181 ~-------d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 181 S-------DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNGG 223 (909)
T ss_pred h-------cCCccccchhhhhcccceeeeehhhccccccceEEEEEEcCc
Confidence 2 257999999999999999999999984 456666666654
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0078 Score=50.61 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=41.9
Q ss_pred cEEEEEEEEecCCC-CeEEEEECCe-----Eecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 645 TARVECSAFSIPPP-EKVTWSYRGE-----EIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p-~~v~W~~~g~-----~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|+|.|.+.....+ ..+.|++... .+.. ....++.+.... .....+|+|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence 47899998865542 3689998531 1111 113445444321 245678999999999999999
Q ss_pred EEE
Q psy17146 708 CSV 710 (1011)
Q Consensus 708 C~a 710 (1011)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0089 Score=51.86 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
++.+.|.|.+.+.+|. .+++|+||+.. ..+..........+..+...+.|.+..........|+|++.+..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 5678999997777784 57999999887 44322222222223466667888887655445778999999864
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=51.43 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=50.6
Q ss_pred cCCCcEEEEEEccCCC-C-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 146 TEDREIELECISANGK-P-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~-P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
..++.+.|.|.+.+.+ | ...++|.++++. .. ............+...+.|.|..-.......|+|.+.+...
T Consensus 17 ~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 17 LLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred CcCCccEEEEEEeccCCCCCeEEEEEECCcc--Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3577899999977767 7 468999999876 22 11111222234677788999886666667779999998755
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0052 Score=47.79 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=38.4
Q ss_pred cCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 403 DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 403 ~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
..|.+|+|+|...+. .+.|.+++... .+....+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~-~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVS-QGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccC-CCCCceEEeeccC-CCCceEEEEeCC
Confidence 458999999997633 39999998333 3344566677777 999999999964
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0069 Score=47.39 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=39.5
Q ss_pred CCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 405 G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+.|.|.|.+. .+|.|++ |..+.......|.+.....+-.|+|+|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 45799999762 4699999 6555544578888999999999999999876
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.8 Score=46.24 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=91.3
Q ss_pred ceEEEcCCCcEEEEEEEec---CCCCeEEEEecCCce------------e--------------------ecCCCcEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDVDG---NPAPEITWIHEDSDK------------V--------------------VGNSPNLTLL 596 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g---~p~p~v~W~k~~~~~------------~--------------------~~~~~~L~I~ 596 (1011)
..+.+..|..+.|.|..+. ..-...+|+--|-++ + ....++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3566778999999999875 233478898654111 0 0123799999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecC-CcEEEEEEEEec-CCCCeEEEEECCeEecccC
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPG-DTARVECSAFSI-PPPEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G-~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~ 674 (1011)
++..+.+|-|+|+|.. +........-|.|...-.+. ...+| ......|-+-.. -.|..+.|.-+|.......
T Consensus 352 ka~I~N~GCY~~~a~~-g~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 352 KAHINNAGCYEAQAFM-GKFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred eEEEEcCCceEEEEec-CcchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 9999999999999986 33333333334443211111 11132 334677877655 5565799999887654211
Q ss_pred CCCeEEecCC-cCccceeEEEEcCCCCCC-CEEEEEEEEcCCC
Q psy17146 675 SDDYSVLEDP-LKEGIKSTLIIRESRHDH-FGVYNCSVSNPYG 715 (1011)
Q Consensus 675 ~~~~~~~~~~-~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G 715 (1011)
........+. ...-..+.+.|.+-...| --.-.|+..-..|
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 1111111111 112245678888765555 3356676654444
|
|
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0095 Score=51.67 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=43.9
Q ss_pred eeecCCcEEEEEEEEec--CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 639 FGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+..++|.|.+.|. |..+.|+|.++|.. .. .... ...+........+.|.|..-.......|+|.|.+...
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 34467889999999984 55678999999875 21 1000 0011000011245666664333444479999987754
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0048 Score=47.94 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=37.3
Q ss_pred cCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 557 DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 557 ~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
..|.+|+|.|...+. .+.|.+++... .+.+..+.+.+-. +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~-~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVS-QGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccC-CCCCceEEeeccC-CCCceEEEEeCC
Confidence 358999999986533 39999998333 2344566666666 899999999975
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0096 Score=53.86 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=44.5
Q ss_pred eEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 38 TAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
...-.++|.|+|.+..- .-.+.|.+++..+...... ....+..+ .+...|+++|.+...+.- .|.|
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnY 100 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNY 100 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccce
Confidence 44578999999999861 2269999998766322111 11234455 555678889999996655 8999
Q ss_pred EEEEEeC
Q psy17146 106 QCQVSTG 112 (1011)
Q Consensus 106 ~C~~~~~ 112 (1011)
+|.+...
T Consensus 101 TCeVt~~ 107 (130)
T PF08204_consen 101 TCEVTEL 107 (130)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 9999875
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.03 Score=63.07 Aligned_cols=42 Identities=19% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC
Q psy17146 434 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475 (1011)
Q Consensus 434 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~ 475 (1011)
...+.|.|.+++.+|+|.|+....+..+......+.|.|..+
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp ------------------------------------------
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 345679999999999999999998765555445566666543
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.069 Score=47.28 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCCC--eEEEEECCe-Eecc------------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGE-EIGV------------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~--~v~W~~~g~-~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
+....+..|+.++|+|.++|..... .+.|+|.-. .+.. ....++.+..+. ....-.|+|.+++
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~--s~ntv~L~l~~L~ 82 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTL--GNEQVNFTLQNLR 82 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeC--CCCEEEEEEcCCC
Confidence 3445677889999999998765542 688998421 1110 122333333321 2345789999999
Q ss_pred CCCCEEEEEEEE
Q psy17146 700 HDHFGVYNCSVS 711 (1011)
Q Consensus 700 ~~d~G~Y~C~a~ 711 (1011)
.+|++.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999763
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.064 Score=46.51 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=42.1
Q ss_pred CcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 644 DTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 644 ~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
....+.|.+. |.|.+ .|+|+++... .... ......++ ..+.|.+......|.-.|+|+|.|..-....
T Consensus 16 ~~~va~C~s~~gkP~a-~ItW~~~~~~-----~~~~--~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 16 PVTVATCVSANGKPPA-TISWETTLGG-----EAET--QSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred ccEEEEEECCCCcCCC-EEEEEeCCCC-----ccee--EeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 4568999984 77888 9999997111 0001 11111122 2467777665555555999999998854433
Q ss_pred EE
Q psy17146 720 EI 721 (1011)
Q Consensus 720 ~~ 721 (1011)
.+
T Consensus 88 ~~ 89 (95)
T cd05719 88 RF 89 (95)
T ss_pred EE
Confidence 33
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.068 Score=45.79 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred eeecCceEEEEEEcccCCCc--cEEEEEeCCcccCCccc-----------cceEEEEeeecccCCcEEEEEEEEEeeC
Q psy17146 247 RLVEGTDVRLYCKAEANPSH--MKYRWYINDQPVPAAAS-----------ATELYLTNITRHQHDSIVKCEVQVSVIG 311 (1011)
Q Consensus 247 ~v~~g~~v~L~C~~~~~~~~--~~i~W~~~~~~l~~~~~-----------~~~l~i~~~~~~~~~~~~~c~~~~~~~~ 311 (1011)
.+.+|+.+++.|.+.+..+. ..+.|++.+..+..... ...-.....+++|++..+.|.+.+.+.+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~~ 88 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHIDE 88 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeecc
Confidence 45799999999999988664 78999987766554321 1122334446899999999999988764
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.9 Score=44.02 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=89.9
Q ss_pred CceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCC-----cccCCC--------CcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGP-----HRNLSG--------FDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~-----~~~~~~--------~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
-++...+|++|.|.|...... ....|++++.-... ...+.. .+.+.+..+ ....+|+|.++..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~--g~~STLTIkk~~i 109 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS--GNSSTFTMKKPDP 109 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe--ccceeEEeccCCc
Confidence 467888999999999966533 26899986522111 011111 133444333 3456999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
+..|-|+|++..+...+ ....--|.|+... +. .........-.+.|-+. +.-..-..|.-+|-.. .+.
T Consensus 110 ~N~GCYtc~~ks~~~k~---E~c~kCl~V~~~~----V~---~~W~e~nNeT~V~CyVg-S~~~dvp~W~V~GVvt-tGg 177 (251)
T PHA02982 110 QNLGCFTCEAKDAEGKE---ETCEKCLEIQKED----IL---YVVEEHNNETIITCFVG-SKHGDVPRFIVAGIVT-TGG 177 (251)
T ss_pred ccCCceEEEEecCCCch---heeheeeeEecce----EE---EEEEecCCeEEEEEEEE-eccCCCccEEEeeEEe-cCC
Confidence 99999999998854332 1223344442211 10 11112344567889743 2222222787654321 222
Q ss_pred eEEEe------eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 180 RVTEE------ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 180 ~~~~~------~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+...+ ....+ -.-..+.|.+.-.++--.=.|+.--..+.+
T Consensus 178 ~~sg~i~~gfn~~seg---y~y~~Ikin~s~~~~V~kp~CRy~~~~~ya 223 (251)
T PHA02982 178 PMSGEIPKGFNQDSEG---YRYNSIKINESVTDHIEKPYCRYWIDNDHA 223 (251)
T ss_pred ccccccccccccccCc---eEEEEEEEcccccccccccEEEEEcCCCce
Confidence 11100 01111 111356665554556666778776554443
|
|
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=63.31 Aligned_cols=166 Identities=7% Similarity=-0.081 Sum_probs=114.4
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
...++.-....++...+.|.+.+...+.+.|+.+.-.... ....++.|.+-...+.+.|+|...+ ..+.....+...
T Consensus 233 ~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~-~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 233 GSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKR-QGCQDRFKVTEE 311 (1205)
T ss_pred CCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeeccc-CCcccceeeeEE
Confidence 3344455567788899999999999999988877533322 3445677778788888889999887 344444433333
Q ss_pred EcC----------------CCeee----cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 626 LKG----------------RPTII----SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 626 V~~----------------~P~i~----~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
+.. +|... ......+..+..+++.|...+.+.|..+.|++++.....+....+.. .
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~ 387 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP----V 387 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc----c
Confidence 211 12111 12344566788999999999999986699999887766433221111 1
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.......+.|..+...+.+.|.|.|.|..|...
T Consensus 388 ~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 388 GTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred ccccCcchhhhhcCcccccccccceeccCCccc
Confidence 234457899999999999999999999999543
|
|
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.11 Score=45.00 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=39.4
Q ss_pred CcEEEEEEEcC--CCCeeEEeeCCeecCCcc-cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 43 SRVTLPCRVID--KTGVLQWTKDDFALGPHR-NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 43 ~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~-~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
..+.+.|...+ |.+.|.|+++........ .....+++.+ ...|.+..-..+|.-.|+|++.+..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv-------~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTV-------TSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEE-------EEEEEEecCHHHCCCEEEEEEeCcc
Confidence 56789999987 556999999832211111 0111112222 1257776667777789999999854
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.04 Score=49.95 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=49.7
Q ss_pred eecCCcEEEEEEEEecCC----CCeEEEEECCeEecccCCCCeEEec--------CCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 640 GIPGDTARVECSAFSIPP----PEKVTWSYRGEEIGVGSSDDYSVLE--------DPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~----p~~v~W~~~g~~l~~~~~~~~~~~~--------~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
..-+++|.|.|.+..... ...|.|.++|+.+-.-+........ ... -...++|.+...+.- .|+|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l-~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISEL-LKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGG-GGTB--EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHh-hCCCEEEEEcchhcc-ccceE
Confidence 345789999999865222 1269999999887542222111100 001 123567888886555 89999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.+...+.+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999998888888888763
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.078 Score=40.50 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
.....|.|.++..+ |+|.|.|..+|..-....++.|.|....
T Consensus 15 ~~~~nLwilpa~~s-DSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 15 DNCNNMLILNPTQS-DSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccccEEEeccccc-cCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 46678999999988 9999999999887777788888886543
|
|
| >PRK14081 triple tyrosine motif-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=12 Score=44.23 Aligned_cols=393 Identities=11% Similarity=0.123 Sum_probs=210.1
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECC--e--ecCCCcCccEEEEeecccccCCcEEE--EEEEcCCccc----eee
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYIND--Q--PVPAAASATELYLTNITRHQHDSIVK--CEVHNDVGKS----EDS 382 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g--~--~l~~~~~~~~L~I~~~~~~~d~G~Y~--C~a~n~~g~~----~~s 382 (1011)
..+..|+.+.+...+...+ +-++.+.++ . .+..=.....|.. +.. .+|.|. |.+.+..... .+.
T Consensus 107 ~~l~vGe~l~~~V~~~~e~--~LYKF~I~~~~~w~~iqDYst~n~lsy---t~~-~~G~Y~ll~~~Kd~~S~~~fDD~~~ 180 (667)
T PRK14081 107 DTLNVGEKIEIKVDSNKEP--LMYRYWIKEDNNWKLIKDYSTENSLSY---TAN-KPGKYELLVECKRIDSTKDFDDFKK 180 (667)
T ss_pred ccccCCCEEEEEEEeccCc--EEEEEEEcCCCcEEEEEecCCcceEEE---Eec-CCCcEEEEEEEecCCCccccCcceE
Confidence 3567888887776654433 344433322 1 1111122233333 222 678775 4555443322 233
Q ss_pred EEEEEEecceEeeC---CCceEecCCCcEEEEeec--CCCCCCceEEEe---CCCceeeccCCcEEEEeeccCCCeEEEE
Q psy17146 383 ETLDVTYGPRFRAR---PYSVQVDRGAGVNLLCDV--DGNPAPEITWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYC 454 (1011)
Q Consensus 383 ~~l~V~~~P~~~~~---p~~~~v~~G~~v~l~C~~--~g~p~p~v~W~k---~~~~~~~~~~~~L~I~~v~~~d~G~Y~C 454 (1011)
....|..-+.+.+. --+..+..|+.+.|...+ .+.-..-++..+ +|......+-.+-.+-.-.+..+|.|+.
T Consensus 181 v~y~Vk~~~~v~I~~F~~lns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i 260 (667)
T PRK14081 181 VKFKVKEIDKVEITDFKCLNKELICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKL 260 (667)
T ss_pred EEEEcccCcceEEEeccccCcceecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEE
Confidence 44444443332221 111235558888888555 333333455554 4433333333344445556789999965
Q ss_pred EE--EEc---CCcceeeEEEEEEcC--CCeeec---cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee-------
Q psy17146 455 KA--SVM---GFPEVGAEATVYLKG--RPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG------- 517 (1011)
Q Consensus 455 ~a--~n~---~~~~~s~~~~v~v~~--~p~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~------- 517 (1011)
.+ ... ..-...+.+...|.. ++.+.. ........|+.+.+...+.|+..- .+++.-.|..+.
T Consensus 261 ~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~l-lYrf~I~G~~~e~~~Y~~~ 339 (667)
T PRK14081 261 LCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKEL-LYRFIIKGKESEDSGYIRN 339 (667)
T ss_pred EEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCce-EEEEEECCcEEeecccccc
Confidence 54 431 112233344444433 233322 233445789999999999987754 566555564442
Q ss_pred ------ccCCCceEEEc----CCCC----CcccEEEEEEec---ce-ee--cCCceEEEcCCCcEEEEEEEecCCCCeEE
Q psy17146 518 ------VGSSDDYSVHN----DVGK----SEDSETLDVTYG---PR-FR--ARPYSVQVDRGAGVNLLCDVDGNPAPEIT 577 (1011)
Q Consensus 518 ------~~~~~~y~~~n----~~G~----~~~~~~l~V~~~---P~-~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~ 577 (1011)
....|.|.+.- .... ......+.+... |. +. ..+..-.+..|+.+.+.|.++|.-...+.
T Consensus 340 n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~ 419 (667)
T PRK14081 340 NIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYS 419 (667)
T ss_pred ceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEE
Confidence 33577887532 2221 123334444443 32 21 12233456779999999999887655443
Q ss_pred -EEecCCceeec----CCCcEEEeecCCCCCEEEEEEEE--ec---CCCceeeEEEEEEcC-CCe-ee---cCCceeeec
Q psy17146 578 -WIHEDSDKVVG----NSPNLTLLMTSDDLAGRYYCKAS--VM---GFPEVGAEATVYLKG-RPT-II---SHRTQFGIP 642 (1011)
Q Consensus 578 -W~k~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~--n~---~~~~~s~~~~l~V~~-~P~-i~---~~~~~~v~~ 642 (1011)
|.+.++..... .+..+.+ .+.-+|.|+..+. +. ..-.....+.+.|.+ .|. +. .+.......
T Consensus 420 f~ik~ng~~ve~~~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~v 496 (667)
T PRK14081 420 FIIKKDGKEEEKIDYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLV 496 (667)
T ss_pred EEEEECCEEEEEeecccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEe
Confidence 66655444322 2344444 5688999988775 31 112346778888876 565 33 344556889
Q ss_pred CCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE--EcCCC----
Q psy17146 643 GDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV--SNPYG---- 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~N~~G---- 715 (1011)
|+.+++.|.+++.-.. ..+.-+.||.-+... .|.. ...+++. +.-+|.|+..+ .|...
T Consensus 497 g~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t---~Ys~---------~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~ 561 (667)
T PRK14081 497 GDDIEIEVIIQNTKDVLIKYILKINGHKVEET---DYIK---------NKKYKFI---PKCSGKYTIEVLAKNIKSTEEY 561 (667)
T ss_pred CCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe---eccc---------cceEEEe---ecCCceEEEEEEEccccccccc
Confidence 9999999999886433 123333466665321 1111 1233333 56789999764 46555
Q ss_pred CeEEEEEEEecCCCC
Q psy17146 716 SDSVEIMLKPQKSFP 730 (1011)
Q Consensus 716 ~~~~~~~l~V~~~~~ 730 (1011)
.+...+.+.|.+..|
T Consensus 562 D~~k~v~~~V~e~~p 576 (667)
T PRK14081 562 DSKKEVKFYVREALP 576 (667)
T ss_pred ccceEEEEEEcCCCC
Confidence 345677888865533
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.36 Score=46.67 Aligned_cols=124 Identities=14% Similarity=0.280 Sum_probs=70.4
Q ss_pred eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeecee-----EEE--------eeecCCceEEEEEEEEEeeccCcCCcE
Q psy17146 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR-----VTE--------EASVDGRRTTVKSTLVLTPKKEHHNTT 210 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~-----~~~--------~~~~~~~~~~~~~~L~I~~~~~~d~G~ 210 (1011)
....|+++.|.|....+.--....|+++++....... ... ............++|+|+++..+..|.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 3456999999998545555567889987655444111 100 000000111234799999999999999
Q ss_pred EEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecC-ceEEEEEEcccCCCccEEEEEeCCc
Q psy17146 211 FTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG-TDVRLYCKAEANPSHMKYRWYINDQ 276 (1011)
Q Consensus 211 Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g-~~v~L~C~~~~~~~~~~i~W~~~~~ 276 (1011)
|+|++....+... ...--+.|+.. .+.. .+.++ ..-.+.|-+.+...... .|..+|.
T Consensus 115 Ytc~~ks~~~k~E-~c~kCl~V~~~-~V~~------~W~e~nNeT~V~CyVgS~~~dvp-~W~V~GV 172 (251)
T PHA02982 115 FTCEAKDAEGKEE-TCEKCLEIQKE-DILY------VVEEHNNETIITCFVGSKHGDVP-RFIVAGI 172 (251)
T ss_pred eEEEEecCCCchh-eeheeeeEecc-eEEE------EEEecCCeEEEEEEEEeccCCCc-cEEEeeE
Confidence 9999998665442 21222222110 1111 11223 34566898887765422 8877664
|
|
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.7 Score=47.01 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=31.2
Q ss_pred cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCC
Q psy17146 435 NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476 (1011)
Q Consensus 435 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p 476 (1011)
+.+.|.|.+++..++|.|+....|.++ .....+.|.|+.++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~ 172 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPP 172 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCC
Confidence 457799999999999999999997554 44445566676543
|
|
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.11 Score=60.42 Aligned_cols=107 Identities=7% Similarity=0.052 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCC------eEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGS------DSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPP 763 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (1011)
...++|.++.+...++|...|.|.... ..+.+.++.. +..+++
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~-------------------------------qa~ps~ 445 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTN-------------------------------QAAPSP 445 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeecc-------------------------------ccCCCc
Confidence 468899999999999999999998763 2333444332 223345
Q ss_pred CCCCccccccccccccccc-CCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCC
Q psy17146 764 PGNGIEHHVTADGEKNQCK-ESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSE 816 (1011)
Q Consensus 764 p~~~~~~~~~~~s~~~~W~-~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~ 816 (1011)
-..++....+.+++.|+|. +...+..|..|.|.|.++.. .|.+.|.| | .|.|.
T Consensus 446 V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~ 525 (996)
T KOG0196|consen 446 VSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGP 525 (996)
T ss_pred cceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCC
Confidence 5567888899999999993 33345579999999988742 89999999 4 88888
Q ss_pred CC-ccccccccc
Q psy17146 817 TG-SESVHTRIG 827 (1011)
Q Consensus 817 ~s-s~~~~t~~~ 827 (1011)
.| ...+.|.+.
T Consensus 526 ~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 526 YSGKHEFQTLPS 537 (996)
T ss_pred CCCceeeeecCc
Confidence 88 333455543
|
|
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.1 Score=39.87 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=33.7
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
...|-|.++..+|+|.|.|+.+|.---...++.|+|..
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 36799999999999999999999988888899998854
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.46 Score=41.06 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred ceeEEecCcEEE-EEEEcC--CCCeeEEeeCCeecCCcc-cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 36 DQTAVVGSRVTL-PCRVID--KTGVLQWTKDDFALGPHR-NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 36 ~~~v~~G~~v~L-~C~v~~--~~~~v~W~k~~~~l~~~~-~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
.+.+.+|+.+.+ .|...+ |.+.|.|+.+........ .....+.+.+. .+|.+..-+.+|.-.++|++.+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~-------S~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT-------SEYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE-------EEEEEEeCHHHCCcEEEEEEeC
Confidence 466779999999 999987 556999998754332111 11111233322 2577767777778899999988
Q ss_pred CC
Q psy17146 112 GI 113 (1011)
Q Consensus 112 ~~ 113 (1011)
..
T Consensus 83 ~a 84 (97)
T cd07704 83 PA 84 (97)
T ss_pred cc
Confidence 53
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.18 Score=59.49 Aligned_cols=152 Identities=16% Similarity=0.275 Sum_probs=90.9
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCC-cE--EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP-NL--TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~-~L--~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
...+..|..+++.|.+.+.|.|.+.|+............ .+ ....+-.. +.|.++| ..+.....+.+.+..+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~----~~c~~E~-~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN----DLCIAEN-AVARSNPSILLVVDLP 275 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec----hhhHHHH-hhhhcCceeeeEEecc
Confidence 455778999999999999999999999886443322211 11 11111111 8999998 5666666777777666
Q ss_pred CeeecCCceeeecCCcEEEEEEEE---ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAF---SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~---g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+....+....-. .=.|... +.|.+ ...|..++..+.........+... ..-+........+.|.|
T Consensus 276 ~~~~~~~~~~~~-----~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~t~s~~------~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 276 KAEVLLCSPLSD-----HHNCIPIGITANPGP-ALHWCYNGSGLNYRGTVCVTKSGK------EQCLPWNDPPHSHNGNY 343 (774)
T ss_pred cccccCCCCccc-----cCceeeeeccCCCCC-ceeeeecCccceEecccccccccC------cCCcccCcCcccccCcc
Confidence 554422111000 2233333 55566 789999988766433222222221 02223333366789999
Q ss_pred EEEEEcCCCCeEEEE
Q psy17146 707 NCSVSNPYGSDSVEI 721 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~ 721 (1011)
+|.+.|..|......
T Consensus 344 ~~~~e~~~g~~~~r~ 358 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRN 358 (774)
T ss_pred eeeecccCccccccC
Confidence 999999988654443
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=93.28 E-value=4.4 Score=40.30 Aligned_cols=105 Identities=24% Similarity=0.359 Sum_probs=66.9
Q ss_pred cEEEEEeCCceeeece-eEEEeeecCCceEEEEEEEEE-eeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEEEeCCce
Q psy17146 164 AEITWIDGTGTVMSNV-RVTEEASVDGRRTTVKSTLVL-TPKKEHHNTTFTCQAQNTADRT---YKVARLKLLVKYAPKV 238 (1011)
Q Consensus 164 ~~i~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~I-~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P~~ 238 (1011)
..++||.|+..+..+. +.......++ .+...++|.+ .+...+..-..+|.+.-..... ..++.+.-.|...|.+
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G-~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v 85 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDG-LFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV 85 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCC-cEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE
Confidence 3689999999776532 2222233334 5666788988 4555566778999998654433 2244445566777777
Q ss_pred EEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCccc
Q psy17146 239 QVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPV 278 (1011)
Q Consensus 239 ~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~l 278 (1011)
.+...+ | ...|.+.--+. ...+.|..++.+.
T Consensus 86 sv~F~~------g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 86 SVRFED------G---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEecC------C---EEEEEcceeeCCCeEEEEEECCccC
Confidence 665532 2 34577776663 3899999988764
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.59 Score=39.38 Aligned_cols=66 Identities=30% Similarity=0.503 Sum_probs=46.4
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.=.|.++.|+|++.|+|.-+- .+.................+.+.+-+....|.-..+|.+.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l----~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRL----KGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccC----CCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 4668998999999999998531 11111112222223566678888889999999999999998633
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.1 Score=60.87 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=46.5
Q ss_pred cccccccc---c-----CCCCCCC-cc--cccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEe
Q psy17146 803 VSNVHLDY---A-----GHDSETG-SE--SVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDF 871 (1011)
Q Consensus 803 ~p~~~Y~f---A-----~G~g~~s-s~--~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~ 871 (1011)
.||+.|.+ + +++.-.. |. -++|..+.|+. |..+-... . +.+...++|+| +...||.+..|.|.
T Consensus 574 kP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp-Pl~~ls~s--n-sSsqi~l~W~p--P~~pNG~lt~Ylv~ 647 (1025)
T KOG4258|consen 574 KPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP-PLDVLSKS--N-SSSQILLKWKP--PSQPNGNLTHYLVV 647 (1025)
T ss_pred CccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC-cchhhhcc--C-cchheeEEecC--CCCCCCceeEEEEE
Confidence 89999998 2 2332212 33 38899998865 44433333 0 11122339999 56789999999999
Q ss_pred eeccCCCC
Q psy17146 872 IRDYNQTL 879 (1011)
Q Consensus 872 ~r~~~~~~ 879 (1011)
|+.+....
T Consensus 648 wer~~~~~ 655 (1025)
T KOG4258|consen 648 WERQAEDG 655 (1025)
T ss_pred EEeccCCc
Confidence 99887764
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.53 Score=47.80 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred cCCcEEEEEEEEec----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 642 PGDTARVECSAFSI----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
=++++.+.|.+..- -....+.|.+||+.+-..++. ..++|.+...+ .-.|+|+|+|.+..-+.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFSK-NLSGNYTCEAINKFNKI 96 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence 46889999998642 122379999999988642221 12677776654 34899999999877666
Q ss_pred EEEEEEEec
Q psy17146 718 SVEIMLKPQ 726 (1011)
Q Consensus 718 ~~~~~l~V~ 726 (1011)
...+.|.-.
T Consensus 97 k~~IeLk~~ 105 (286)
T PHA03042 97 KNTIELQYV 105 (286)
T ss_pred cEEEEEEEE
Confidence 666666543
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.48 Score=47.99 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 54 KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 54 ~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
-+|.+.|..++. ..+++..++.++..+ +|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g-----~~l~gn~~~nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNG-----KPLSGNSYVNITETG-----KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCC-----cccCCCCeEEEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence 467899998863 334556677776544 79999999999999999998753
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.16 Score=55.18 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEE---CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSY---RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~---~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
+....+..|++..++|.+.|.+.+ .|+|.+ |+..+.... .. ...+.. -.....|.|-+....|+|.|+|.|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~--nq-~~e~p~-vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRP--NQ-TVENPV-VTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred cchhhcccchhhcccccccCCcCc-eeeeehhhccccceeecC--cc-ccCCcc-eeeeeeEEEcchhhcCCCceeeccc
Confidence 345567889999999999999999 999976 443333211 11 111110 1125789999999999999999999
Q ss_pred cCCCCeEEEEEEEec
Q psy17146 712 NPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 712 N~~G~~~~~~~l~V~ 726 (1011)
|..|-..+.+.+.+.
T Consensus 278 cg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 278 CGAGFLRRDVPCSSV 292 (560)
T ss_pred cccceeeccceeeee
Confidence 999998888888764
|
|
| >PRK14081 triple tyrosine motif-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=34 Score=40.64 Aligned_cols=254 Identities=11% Similarity=0.087 Sum_probs=155.5
Q ss_pred ecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEc-----CCcceeeEEEEEEcCC-
Q psy17146 402 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-----GFPEVGAEATVYLKGR- 475 (1011)
Q Consensus 402 v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-----~~~~~s~~~~v~v~~~- 475 (1011)
...|+.+.|...+.|.-...++..-.|.......-..-.--+..++.+|.|...+.-. +.-.....+...+...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~ 381 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS 381 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccC
Confidence 4679999999999876666666555554433222222333445677899999888741 1122344555555543
Q ss_pred --Cee----eccCcccccCCCeEEEEeEeeeCCCCC-eeEEeeCCeEee-------------ccCCCceEE----EcCCC
Q psy17146 476 --PTI----ISHRTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIG-------------VGSSDDYSV----HNDVG 531 (1011)
Q Consensus 476 --p~~----~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~i~-------------~~~~~~y~~----~n~~G 531 (1011)
|.. ..........|+.+.+.+.+.++.... .+.-.++|..+. ....|.|++ .|...
T Consensus 382 ~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S 461 (667)
T PRK14081 382 KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYS 461 (667)
T ss_pred CCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEEEEECCCeeEEEEEEEecccC
Confidence 432 223445677899999999999986432 222344776653 335788874 34433
Q ss_pred CC----cccEEEEEEe-cce-ee--cCCceEEEcCCCcEEEEEEEecCCCCeEE-EEecCCceee----cCCCcEEEeec
Q psy17146 532 KS----EDSETLDVTY-GPR-FR--ARPYSVQVDRGAGVNLLCDVDGNPAPEIT-WIHEDSDKVV----GNSPNLTLLMT 598 (1011)
Q Consensus 532 ~~----~~~~~l~V~~-~P~-~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~-W~k~~~~~~~----~~~~~L~I~~v 598 (1011)
.. ...+.+.|.. .|. +. ..+.......|+.+++.|..++.....+. +.+.+++... .....+++.
T Consensus 462 ~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~~~~ysf~-- 539 (667)
T PRK14081 462 DKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIKNKKYKFI-- 539 (667)
T ss_pred chhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccccceEEEe--
Confidence 32 4456677764 443 22 33545568899999999999887655444 3344444332 233455554
Q ss_pred CCCCCEEEEEEEE--ec---CCCceeeEEEEEEcCCCeee-c---CCceeeecCCcEEEEEEEEecCCC
Q psy17146 599 SDDLAGRYYCKAS--VM---GFPEVGAEATVYLKGRPTII-S---HRTQFGIPGDTARVECSAFSIPPP 658 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~--n~---~~~~~s~~~~l~V~~~P~i~-~---~~~~~v~~G~~v~L~C~~~g~p~p 658 (1011)
+--+|.|+..+- |. ..-..-+.+.+.|.++..|+ . ........|+.++++....|.-.-
T Consensus 540 -P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v 607 (667)
T PRK14081 540 -PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDV 607 (667)
T ss_pred -ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcE
Confidence 667899998875 31 11234567888898874443 1 244567889999999888776554
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=5.8 Score=43.66 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCC-ceeeEEEEEE
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYL 626 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~l~V 626 (1011)
+++|.|.+++++|+|.|+-.+...... .....+.|.|
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 567999999999999999998642222 2344455666
|
|
| >KOG3632|consensus | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.1 Score=53.34 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=93.3
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCc-----------ccccccccc---c----CCCCCC------
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGS-----------SVSNVHLDY---A----GHDSET------ 817 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~-----------~~p~~~Y~f---A----~G~g~~------ 817 (1011)
.|.++.+.+++..++.++| +.+.+..-+....-+--... -.|.+.|.- | .+.=+.
T Consensus 674 vpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~e 753 (1335)
T KOG3632|consen 674 VPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPME 753 (1335)
T ss_pred cchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhh
Confidence 7889999999999999999 66555433221111100000 066777766 2 221111
Q ss_pred --C-cccccccccccccccccCCcccccccccCcCCCCCCCCCC---CCCCC-ccEEEEEeeeccCCCCCCCCCC-CC--
Q psy17146 818 --G-SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKP---DGHNN-NGFVFSDFIRDYNQTLPKLAPS-PH-- 887 (1011)
Q Consensus 818 --s-s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~---~~~ng-~~~gY~v~~r~~~~~~~~~~~~-~~-- 887 (1011)
. ...++|..+-|.+||.+|....+. +.....++|.||-- ...|| ..+||-||..-..--+...-++ ++
T Consensus 754 tr~atv~f~tLpAGppappldV~vE~g~--spg~l~vswrPptldsag~sngv~vtgYavyadgqkv~Evafptagst~V 831 (1335)
T KOG3632|consen 754 TRQATVLFRTLPAGPPAPPLDVKVETGG--SPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADGQKVEEVAFPTAGSTKV 831 (1335)
T ss_pred hhccceeeecccCCCCCCchheeeecCC--CCceeeeeccCceeccccccCceeeeeeeeeeCCceeeeeecccCCceEE
Confidence 1 446889999999999998876522 34455669999863 33445 6778999987332222111111 10
Q ss_pred -CCCCCCCcccccCCCCCCCc-ccc--ccCCCCCccccccCCCcccCCC-CCCCCCCC
Q psy17146 888 -LPPSLSNSVIVTDKTPPPSH-LTI--SSNSVDPRYSATYGNPYLRQSP-NLPPPHTG 940 (1011)
Q Consensus 888 -~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 940 (1011)
+.+-.. ++. .-.-+ .++ ..+++|..=++|=| |=+|+-. +-|+|++|
T Consensus 832 elsQlq~-~l~-----~~~V~vRtms~~gesvdsipA~ip~-p~r~~~p~php~PPlA 882 (1335)
T KOG3632|consen 832 ELSQLQD-GLY-----HGAVGVRTMSVPGESVDSIPADIPG-PKRRTCPNPHPPPPLA 882 (1335)
T ss_pred Eeeeehh-hhe-----ecceeEEecccCccccccccccCCc-hhhccCCCCCCCCCCC
Confidence 000000 000 00000 122 44578888888887 6666655 55555555
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=15 Score=40.70 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcc-eeeEEEEEEcC
Q psy17146 418 PAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKG 474 (1011)
Q Consensus 418 p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~v~v~~ 474 (1011)
|.|+..| .+++...+.+|.|.++..+|+|.|+..+....... ..+.+.+.|..
T Consensus 109 ~~~e~~~----~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 109 PGPEFAW----PPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred CCccccc----CcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 3456777 23444446679999999999999999987543332 33345555544
|
|
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=89.37 E-value=8.9 Score=32.69 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=54.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
..+.+.|+...|..|+++.++|...-+.+ .+.|.-.- .|..+.. ..+=..+.+.||+. | ..-.
T Consensus 4 f~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------------~k~~~~~--g~~W~~f~LsnV~~-d-s~~~ 67 (91)
T PF03921_consen 4 FEVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------------SKTELDS--GPQWKAFQLSNVTE-D-SSPL 67 (91)
T ss_dssp S-EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSS------------EEEEEEE--ETTEEEEEEEEE-S-C-EEEE
T ss_pred eEEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEec------------CCcccCC--CCcEEEEEEEcccc-C-CeEE
Confidence 35788999999999999999999987665 44554221 1111111 11223577889986 4 5778
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
|.+.-.. ...++.+.|+|+.+|+
T Consensus 68 C~~~C~g----~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 68 CFFNCSG----EQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEETT----EEEEEEEEEEEEB--S
T ss_pred EEEEcCC----eEEEeEEeeEEeCCCC
Confidence 9998642 2457789999998764
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.4 Score=52.22 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=63.1
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec---CCcee-----------ecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE---DSDKV-----------VGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~---~~~~~-----------~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
+.+..-|....+-.+++..+.|.+.|.+.+.|+|.+. ....+ ..+...|.|-+....|+|.|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 3444555667788999999999999999999999864 22222 233478999999999999999999
Q ss_pred EecCCCceeeEEEEEE
Q psy17146 611 SVMGFPEVGAEATVYL 626 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V 626 (1011)
.| +.|...+.+.+.+
T Consensus 277 rc-g~g~~~rdv~c~s 291 (560)
T KOG4597|consen 277 RC-GAGFLRRDVPCSS 291 (560)
T ss_pred cc-ccceeeccceeee
Confidence 99 6777777776655
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=2 Score=43.83 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=40.2
Q ss_pred CCCcEEEEEEEecC-----CCCeEEEEecCCceeecCC---CcEEEeecCCCCCEEEEEEEEe
Q psy17146 558 RGAGVNLLCDVDGN-----PAPEITWIHEDSDKVVGNS---PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~-----p~p~v~W~k~~~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
=.+++.+.|.+..- ..-.++|..++..+...++ .+|++.. ...-.|.|+|+|.+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~ 91 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAIN 91 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEee
Confidence 46889999998653 3457999999988765443 3566654 55568999999997
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=87.58 E-value=4.5 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=26.8
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEE
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 724 (1011)
.-.|.|+.++..|+|.|.-+++|..|.. ...+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 3689999999999999999999999976 3344443
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.6 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred cEEEEEEEEec-CCCCeEEEEEC
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.++|+|.|.|+ |..+.+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998 77778999999
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=86.34 E-value=1.4 Score=44.81 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 162 PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 162 P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..|.+.|..+++.++.+.... .....+.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~--------nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYV--------NITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeE--------EEccCceEEeeccccccCCceEEEEEEEe
Confidence 467899999888776654322 12223579999999999999999998654
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=31 Score=38.11 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=51.5
Q ss_pred cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC----C-eee--c-------------cCcccccCCCeEEE
Q psy17146 435 NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR----P-TII--S-------------HRTQFGIPGDTARV 494 (1011)
Q Consensus 435 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~----p-~~~--~-------------~~~~~~~~g~~~~l 494 (1011)
....|.|.+++..++|.|+-...|..+......+-|.|.++ + ... . ........||++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 45679999999999999999999765555556666777421 2 111 0 11224567998877
Q ss_pred EeEeeeC----CCCCeeEEeeCCe
Q psy17146 495 ECSAFSI----PPPEKVTWSYRGE 514 (1011)
Q Consensus 495 ~C~~~~~----~~~~~v~W~~~~~ 514 (1011)
.-..... +-...+.|+....
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y~p~ 228 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLFLPY 228 (492)
T ss_pred EEEEeecccCCCceEEEEEEEecC
Confidence 7665522 2333788876443
|
|
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=84.94 E-value=32 Score=38.88 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC-------eeecC-----------CceeeecCCcEEEEEE
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP-------TIISH-----------RTQFGIPGDTARVECS 651 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P-------~i~~~-----------~~~~v~~G~~v~L~C~ 651 (1011)
.+.|+|.+++..++|.|+-......+.+.-..+-|.|+..+ .+.+. ......+|+++.+...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 46899999999999999988774212223335556665522 22211 1223457999888877
Q ss_pred EEec----CCCCeEEEEE
Q psy17146 652 AFSI----PPPEKVTWSY 665 (1011)
Q Consensus 652 ~~g~----p~p~~v~W~~ 665 (1011)
.... |....|.|++
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 6543 3334799986
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=84.72 E-value=11 Score=32.94 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=44.0
Q ss_pred cEEEEeecCCCCCCc--eEEEeCCCc----------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 407 GVNLLCDVDGNPAPE--ITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 407 ~v~l~C~~~g~p~p~--v~W~k~~~~----------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
.+...-...+.+... ++|..+... .....+-.|.|+.++..|+|.|..++.+..+....+.+.|.|
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 466666665555554 455433211 113346679999999999999999999987777777777766
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=21 Score=40.24 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=51.7
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce---------EeeCC------------CceEecCCCc
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR---------FRARP------------YSVQVDRGAG 407 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~---------~~~~p------------~~~~v~~G~~ 407 (1011)
...+.|.|.+++.+ ++|.|+-...+..+.....+.|.|..++. ....| .......|++
T Consensus 131 ~~~~~l~I~~at~~-~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt 209 (542)
T PHA03283 131 PERSVLQIQRATPN-IAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS 209 (542)
T ss_pred CCCCeeEEEecccc-cCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence 35688999999998 99999999998766444556667765211 11111 1234567999
Q ss_pred EEEEeecCCCC-----CCceEEEeCC
Q psy17146 408 VNLLCDVDGNP-----APEITWIHED 428 (1011)
Q Consensus 408 v~l~C~~~g~p-----~p~v~W~k~~ 428 (1011)
+.+........ ..++.|++-.
T Consensus 210 f~lsi~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 210 FDLSVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred eeEeEEEeeccCCCCceEEEEEEEec
Confidence 88877763222 2479998743
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=82.80 E-value=8.2 Score=32.90 Aligned_cols=67 Identities=16% Similarity=0.367 Sum_probs=45.1
Q ss_pred CCceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
++...+..|.+++..|...-. ... .|.|..|+..+. ..+|....+ ..+++++.+......-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~-~I~Wkln~~~iP---~~qy~~in~-----~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNAS-QIVWKLNGEKIP---GSQYRVIND-----TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STT-CEEEECSSCEST---CGCEEEEST-----TEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccc-eEEEEECCEECC---hhHcceeCC-----eEEEEEEccCCCCCceEEEEE
Confidence 445568899999999998733 233 799999999664 456665543 248889998887776677776
Q ss_pred E
Q psy17146 710 V 710 (1011)
Q Consensus 710 a 710 (1011)
.
T Consensus 81 l 81 (89)
T PF06328_consen 81 L 81 (89)
T ss_dssp E
T ss_pred E
Confidence 4
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=30 Score=38.29 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccce-eeEEEEEEe-----cceEe--e------------CCCceEecCCCcE
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTY-----GPRFR--A------------RPYSVQVDRGAGV 408 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~-----~P~~~--~------------~p~~~~v~~G~~v 408 (1011)
.....|.|.+++.+ ++|.|+-...|..|... ..+.|.|.. +|... . .........|+++
T Consensus 124 ~~~~~L~I~nAt~q-naGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF 202 (492)
T PHA03286 124 GRGKELTILNASSQ-NAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTV 202 (492)
T ss_pred CCCCceEEeecccc-ccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeE
Confidence 45678999999998 99999999998877654 445566642 12111 1 2233446679998
Q ss_pred EEEeecC-----CCCCCceEEEeC
Q psy17146 409 NLLCDVD-----GNPAPEITWIHE 427 (1011)
Q Consensus 409 ~l~C~~~-----g~p~p~v~W~k~ 427 (1011)
.+..... +.-..++.|++-
T Consensus 203 ~vSv~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 203 DASVTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEEEEeecccCCCceEEEEEEEe
Confidence 8776663 122348999874
|
|
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=80.18 E-value=3.1 Score=49.24 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecC
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTG 800 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~ 800 (1011)
.|.||..+.....+++.+.+.| |+.+.++.|+.|.|..+..
T Consensus 610 ~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 610 IPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQ 651 (1025)
T ss_pred CCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEec
Confidence 3447777766666676888999 9999999999999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1011 | ||||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 1e-13 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 3e-05 | ||
| 3alp_A | 331 | Cell Adhesion Protein Length = 331 | 2e-13 | ||
| 4fmf_A | 313 | Crystal Structure Of Human Nectin-1 Full Ectodomain | 2e-13 | ||
| 3u82_B | 317 | Binding Of Herpes Simplex Virus Glycoprotein D To N | 2e-13 | ||
| 3sku_E | 319 | Herpes Simplex Virus Glycoprotein D Bound To The Hu | 2e-13 | ||
| 2cry_A | 122 | Solution Structure Of The Fifth Ig-Like Domain Of H | 3e-13 | ||
| 4fom_A | 308 | Crystal Structure Of Human Nectin-3 Full Ectodomain | 6e-12 | ||
| 4fqp_A | 313 | Crystal Structure Of Human Nectin-Like 5 Full Ectod | 2e-11 | ||
| 1dgi_R | 302 | Cryo-Em Structure Of Human Poliovirus(Serotype 1)co | 2e-11 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 3e-11 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 5e-11 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 1e-10 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 1e-07 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 2e-10 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 4e-10 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 2e-08 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 3e-08 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 5e-08 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 1e-06 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 1e-05 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 2e-05 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 2e-05 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-05 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 3e-05 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 8e-05 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-05 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-05 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 9e-05 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 1e-04 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 2e-04 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-04 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 2e-04 | ||
| 1f97_A | 212 | Soluble Part Of The Junction Adhesion Molecule From | 4e-04 | ||
| 2ifg_A | 347 | Structure Of The Extracellular Segment Of Human Trk | 4e-04 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 4e-04 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 4e-04 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 4e-04 | ||
| 3epc_R | 213 | Cryoem Structure Of Poliovirus Receptor Bound To Po | 4e-04 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 5e-04 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 5e-04 | ||
| 3uro_R | 221 | Poliovirus Receptor Cd155 D1d2 Length = 221 | 5e-04 | ||
| 2l7j_A | 95 | Solution Structure Of The Third Immunoglobulin-Like | 5e-04 |
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3ALP|A Chain A, Cell Adhesion Protein Length = 331 | Back alignment and structure |
|
| >pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain (D1-D3) Length = 313 | Back alignment and structure |
|
| >pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1 Exploits Host Cell Adhesion Length = 317 | Back alignment and structure |
|
| >pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human Receptor Nectin-1 Length = 319 | Back alignment and structure |
|
| >pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human Kin Of Irre Like 3 Length = 122 | Back alignment and structure |
|
| >pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain (D1-D3) Length = 308 | Back alignment and structure |
|
| >pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain (D1-D3) Length = 313 | Back alignment and structure |
|
| >pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed With Three Domain Cd155 Length = 302 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212 | Back alignment and structure |
|
| >pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In Complex With Nerve Growth Factor Length = 347 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To Poliovirus Type 1 Length = 213 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2 Length = 221 | Back alignment and structure |
|
| >pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain Of Nectin-1 Length = 95 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 3e-73
Identities = 131/731 (17%), Positives = 224/731 (30%), Gaps = 121/731 (16%)
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ--GDTLYTTEDR 149
+ + L + G + + P ++ + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALI-ACGSQTLAANPPDADQK----GPVFLKEPTNRIDFSNST 55
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
E+EC A+G P EI WI GT + +V + S DG+ ++E H
Sbjct: 56 GAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQ 113
Query: 210 TFTCQAQNTA--DRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
+ C A+N + V + A + V ++ G + C + +
Sbjct: 114 VYACLARNQFGSIISRDV---HVRAVVAQYYEADV-NKEHVIRGNSAVIKCLIPSFVADF 169
Query: 268 K--YRWYINDQPVPAAASAT----------ELYLTNITRHQHDSIVKCEVQVSVIGSNRL 315
W+ +++ + EL++ + +C + + G RL
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 316 -------------------------------VEGTDVRLYCKAEANPSHMKYRWYINDQP 344
+ + L C A+ P +RWY +
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEG 288
Query: 345 VPAAASAT----------ELYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRF 393
+ L + + DS C V+N VG L VT
Sbjct: 289 TTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYY 453
+ P + VD G C GNP ++W+ D + + L + + G Y
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQ 405
Query: 454 CKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C E AE + + P +I + + PG + ++C A P PE ++W
Sbjct: 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPE-ISWE 464
Query: 511 YRGEEIG-------------------------VGSSD--DYSVH--NDVGKSEDSETLDV 541
G++I V ++D Y + VG +E S L+V
Sbjct: 465 LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED----SDKVVGNSPNLTLLM 597
P R + + G + + C V G P I W ++ ++ PN TL++
Sbjct: 525 YGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLII 583
Query: 598 TSDDL---AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR--TQFGIPGDTARVECSA 652
+ + Y C A V + P II G + CS
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P + W+ G+ I S D + G S L I H G + C N
Sbjct: 644 PGGDLPLNIDWTLDGQAI---SEDLGITTSRVGRRG--SVLTIEAVEASHAGNFTCHARN 698
Query: 713 PYGSDSVEIML 723
G L
Sbjct: 699 LAGHQQFTTPL 709
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 251 bits (642), Expect = 7e-71
Identities = 136/807 (16%), Positives = 234/807 (28%), Gaps = 153/807 (18%)
Query: 29 KFAMEPQDQTAV-VGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP ++ + + C+ +G + W + D G R
Sbjct: 40 VFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSD---GTAVGDVPGLRQIS-- 91
Query: 84 SDEEGDYSLEIYPVMLDDDA------RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
D L P +D Y C G I SR + +V
Sbjct: 92 ----SDGKLVFPPFRAEDYRQEVHAQVYACLAR-NQFGS--IISRDVHVRAVVAQYYEAD 144
Query: 138 VQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V + ++C+ S ++W + + V
Sbjct: 145 VN--KEHVIRGNSAVIKCLIPSFVADFVEVVSWH------TDEEENYFPGAEYDGKYLVL 196
Query: 196 STLVLT---PKKEHHNTTFTCQAQNTADRTYKVARLKLLV--------KYAPKVQVSVIG 244
+ L E ++ C+ ++ +++ K + V ++
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
Query: 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTNITR 294
+ + L C A+ P +RWY + + L + +
Sbjct: 257 MKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV- 314
Query: 295 HQHDS------------IVKCEVQVSVIG---------SNRLVEGTDVRLYCKAEANPSH 333
DS E ++V + + G C+ NP
Sbjct: 315 -VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 373
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYG-- 390
W + + + S + L + ++ + D + +C V ND +E S L +
Sbjct: 374 -TVSWMKDGKAIGH--SESVLRIESVKKE--DKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 391 -PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPN 438
P R ++ G V L C GNP PEI+W + V N
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 439 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTAR 493
++ L ++D G Y C A +G A + + G P I + + G+T
Sbjct: 489 VSYLNITSVHAND-GGLYKCIAKSKVG--VAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 545
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGS------------------SD--DYS--VHNDVG 531
V C P + W + + SD Y+ N G
Sbjct: 546 VTCPVAGYPIDS-IVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Query: 532 KS-EDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAP-EITWIHEDS----- 583
S S + V PR + G + L C V G P I W +
Sbjct: 605 YSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED 664
Query: 584 -----DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-R 636
+V LT+ AG + C A + G + + P I
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG--HQQFTTPLNVYVPPRWILEPT 722
Query: 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696
+ G A+VEC A P P+ VTW + + + + + TL +
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDT---PGEYKDLKKSDNIRVEEGTLHVD 778
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ + G Y C N GS +++
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 8e-68
Identities = 114/678 (16%), Positives = 202/678 (29%), Gaps = 117/678 (17%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
Q + + + + G+ + C + V+ W D+ +Y ++
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKYLVLP 197
Query: 84 SDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQ 139
L I V +D YQC+ L S V+ P P++V
Sbjct: 198 -----SGELHIREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSAVPKVVS 251
Query: 140 GDTLYTT---EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
+ L C A G P W V ++ R V
Sbjct: 252 LAKFDMKTYSGSSTMALLCP-AQGYPVPVFRWYKFIEGTTRKQAVV----LNDRVKQVSG 306
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
TL++ + + C N+ L V ++ + + G
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT--VTAPLSAKID-PPTQTVDFGRPAVF 363
Query: 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH-----------QHDSIVKCEV 305
C+ NP W + + + S + L + ++ + +S +
Sbjct: 364 TCQYTGNPIK-TVSWMKDGKAIGH--SESVLRIESVKKEDKGMYQCFVRNDRESA-EASA 419
Query: 306 QVSVIGSNR------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT- 352
++ + G + G V L C A NP+ + W ++ + +
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQV 478
Query: 353 ------------ELYLTNITRHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRARPYS 399
L +T++ + D + KC + VG +E S L+V P R +
Sbjct: 479 GQYVTVNGDVVSYLNITSVHAN--DGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEK 535
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHED----SDKVVGNSPNLTLLMTSDDL---AGRY 452
+ G + + C V G P I W ++ ++ PN TL++ + + Y
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWS 510
C A V + P II G + CS P + W+
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655
Query: 511 YRGEEI---------------------GVGSSDDY----SVHNDVGKSEDSETLDVTYGP 545
G+ I V +S N G + + L+V P
Sbjct: 656 LDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------SDKVVGNSPNL 593
R+ P +G+ + C DG P P++TW SD + L
Sbjct: 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTL 775
Query: 594 TLLMTSDDLAGRYYCKAS 611
+ G Y C+A
Sbjct: 776 HVDNIQKTNEGYYLCEAI 793
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 8e-54
Identities = 110/644 (17%), Positives = 182/644 (28%), Gaps = 125/644 (19%)
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 269
F A A + P T + CKA NP +
Sbjct: 13 LFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM-PEI 71
Query: 270 RWYIND-QPVPAAASATE------LYLTNITRHQHD-----------------SIVKCEV 305
W +D V + L + SI+ +V
Sbjct: 72 IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV 131
Query: 306 QVSVIGSNR---------LVEGTDVRLYCKAEANPSHMK--YRWYINDQPVPAAASAT-- 352
V + + ++ G + C + + W+ +++ +
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 191
Query: 353 --------ELYLTNITRHQHDSIVKCEVHNDVG---KSEDSETLDVTYGPRFRARP---- 397
EL++ + +C + + + ++ V P A P
Sbjct: 192 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVS 251
Query: 398 ----YSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPNLTLL 442
+ + LLC G P P W +D+V S L +
Sbjct: 252 LAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 311
Query: 443 MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 500
+ +G+Y C + +G E + + + TQ G A C
Sbjct: 312 DAVVEDSGKYLCVVNNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG 369
Query: 501 IPPPEKVTWSYRGEEI----------GVGSSD--DYS--VHNDVGKSEDSETLDVTYG-- 544
P V+W G+ I V D Y V ND +E S L +
Sbjct: 370 NPIKT-VSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 545 -PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPN 592
P R ++ G V L C GNP PEI+W + V N
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 593 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTAR 647
++ L ++D G Y C A +G A + + G P I + + G+T
Sbjct: 489 VSYLNITSVHAND-GGLYKCIAKSKVG--VAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 545
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVY 706
V C P + W + + V + TLII R+ Y
Sbjct: 546 VTCPVAGYPIDS-IVWERDNRALPINR--KQKVFPN-------GTLIIENVERNSDQATY 595
Query: 707 NCSVSNPYGSDS-----VEIMLKPQKSFPLLLILTGVIGCVVIL 745
C N G + V++M+ P+ +G + L
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-45
Identities = 102/573 (17%), Positives = 173/573 (30%), Gaps = 104/573 (18%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
SA L ++ + + + +T S + L C G +W
Sbjct: 226 ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPA---QGYPVPVFRW 282
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
K + + DR ++ +L I +++D +Y C V+ +G
Sbjct: 283 YKFIEGTTRKQAVVLNDRV------KQVSGTLIIKDAVVEDSGKYLCVVNN-SVGG---E 332
Query: 121 SRFATLTVLVPP---DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177
S LTV P P R C G P ++W
Sbjct: 333 SVETVLTVTAPLSAKIDPPTQT-----VDFGRPAVFTC-QYTGNPIKTVSW--------- 377
Query: 178 NVRVTEEASVDGRR-TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
DG+ +S L + K+ + C +N + A LKL ++ P
Sbjct: 378 --------MKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------- 285
V + G V L C A NP+ + W ++ + +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 286 --ELYLTNITRHQHDS------------IVKCEVQVSVIG--------SNRLVEGTDVRL 323
L +T++ +D + + +++V G +V G + +
Sbjct: 489 VSYLNITSVHA--NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIV 546
Query: 324 YCKAEANPSHMKYRWYINDQPVPAAASAT-----ELYLTNITRHQHDSIVKCEVHNDVGK 378
C P W +++ +P L + N+ R+ + C N G
Sbjct: 547 TCPVAGYPID-SIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 379 S-EDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAP-EITWIHEDS------ 429
S S + V PR + G + L C V G P I W +
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665
Query: 430 ----DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RT 483
+V LT+ AG + C A + G + + P I
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG--HQQFTTPLNVYVPPRWILEPTD 723
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
+ G A+VEC A P P+ VTW +
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDT 755
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-35
Identities = 84/438 (19%), Positives = 125/438 (28%), Gaps = 94/438 (21%)
Query: 360 TRHQHDSIVKCEVHNDVGKSEDS--ETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDG 416
R + + G + GP F P + + G + C G
Sbjct: 6 ERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASG 65
Query: 417 NPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------------AGRYYCKAS-VMG 460
NP PEI WI D VG+ P L + + L A Y C A G
Sbjct: 66 NPMPEIIWIRSDG-TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 461 FPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIP--PPEKVTWSYRGEEIG 517
+ + V + + I G++A ++C S E V+W EE
Sbjct: 125 S-IISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Query: 518 ----------------------VGSSD---DYS--VHNDVG---KSEDSETLDVTYGPRF 547
VG D Y + + + ++ V P
Sbjct: 184 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 548 RARP--------YSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVG 588
A P + + LLC G P P W +D+V
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 589 NSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 646
S L + + +G+Y C + +G E + + + TQ G A
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
C P V+W G+ IG S L I + + G+Y
Sbjct: 362 VFTCQYTGNPIKT-VSWMKDGKAIGHSE----------------SVLRIESVKKEDKGMY 404
Query: 707 NCSVSNPYGSDSVEIMLK 724
C V N S LK
Sbjct: 405 QCFVRNDRESAEASAELK 422
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-31
Identities = 64/412 (15%), Positives = 123/412 (29%), Gaps = 80/412 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM--- 81
Q++T G V L C G + W D + + DRY +
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVA---GGNPTPEISWELDGKKIANN------DRYQVGQY 481
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
+ + + L I V +D Y+C + +G A L V P I Q +
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKS-KVGV---AEHSAKLNVYGLP---YIRQME 534
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ + C G P I W + N + +G TL++
Sbjct: 535 KKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPINRKQK--VFPNG-------TLIIE 584
Query: 202 PKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260
+ + + T+TC A+N + + L++ V P++ G + L+C
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSAR-GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643
Query: 261 EANPSHMKYRWYINDQPVPA---------AASATELYLTNITRHQHDS------------ 299
+ W ++ Q + + L + + +
Sbjct: 644 PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS--HAGNFTCHARNLAG 701
Query: 300 IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 350
+ ++V +G+D ++ CKA+ P + W P
Sbjct: 702 HQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPK-PQVTWKKAVGDTPGEYK 760
Query: 351 ATE-----------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391
+ L++ NI ++ CE N +G + +
Sbjct: 761 DLKKSDNIRVEEGTLHVDNIQ-KTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 237 bits (605), Expect = 3e-67
Identities = 118/648 (18%), Positives = 204/648 (31%), Gaps = 97/648 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
E G V L + + W K + G + +
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64
Query: 88 ----GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ SL I ++ +D Y V L V P I ++
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVN---EEATGQFRVYPELPKPSISSNNSK 121
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C + + W++ +S + + TL L
Sbjct: 122 PVEDKDAVAFTC-EPETQDATYLWWVNNQSLPVSP---------RLQLSNGNRTLTLFNV 171
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ ++ C+ QN + + L V Y P + G ++ L C A +N
Sbjct: 172 TRNDTASYKCETQNPVS-ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 264 PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR--------- 314
P +Y W++N S EL++ NIT + C+ S G NR
Sbjct: 231 P-PAQYSWFVNGTFQQ---STQELFIPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 315 ---------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------E 353
+ + V L C+ E + Y W++N+Q +P +
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLSNDNRT 343
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVNLL 411
L L ++TR +C + N++ D L+V YGP P G ++L
Sbjct: 344 LTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS 402
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATV 470
C NP + +W+ + + ++ L + ++ +G Y C+A+ T+
Sbjct: 403 CHAASNPPAQYSWLID--GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Query: 471 YLKGRPTIISHRTQFGIP---GDTARVECSAFSIPPPEKVTWSYRGEEI----------- 516
+ S + P D C + W G+ +
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT--YLWWVNGQSLPVSPRLQLSNG 518
Query: 517 -------GVGSSD--DYS--VHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVN 563
V +D Y + N V + D TLDV YGP P GA +N
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLN 578
Query: 564 LLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
L C NP+P+ +W ++ L + + + G Y C S
Sbjct: 579 LSCHSASNPSPQYSWRIN--GIPQQHTQVLFIAKITPNNNGTYACFVS 624
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 5e-66
Identities = 108/668 (16%), Positives = 205/668 (30%), Gaps = 109/668 (16%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDG---------TGTVMSNVR 180
+ P + +G + L + +W G G V+ +
Sbjct: 4 IESTPFNVAEGKE--------VLLLV-HNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQ 54
Query: 181 VTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
T + GR + +L++ ++ +T + + + PK
Sbjct: 55 ATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS 114
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNIT 293
+S S + + V C+ E + Y W++N+Q +P + L L N+T
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVT 172
Query: 294 -----------RHQHDSIVKCEVQVSVIGSNR----------LVEGTDVRLYCKAEANPS 332
++ + V ++V+ G ++ L C A +NP
Sbjct: 173 RNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNP- 231
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT---- 388
+Y W++N S EL++ NIT + C+ HN + +T
Sbjct: 232 PAQYSWFVNGTFQQ---STQELFIPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Query: 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------DKVVGNSPNLTLL 442
F S V+ V L C+ + + W++ S ++ ++ LTLL
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI--ISHRTQFGIPGDTARVECSAFS 500
+ + G Y C + + + P IS + PG + C A S
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407
Query: 501 IPPPEKVTWSYRGEEI---------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPR- 546
PP + +W G + + Y+ +N + +T
Sbjct: 408 NPPAQ-YSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466
Query: 547 ---FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH------EDSDKVVGNSPNLTLLM 597
+ S V+ V C+ + + W++ ++ + LTL
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFN 526
Query: 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQF--GIPGDTARVECSAFSI 655
+ + A Y C T+ + P + G + C + S
Sbjct: 527 VTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN 586
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
P P+ +W G L I + ++ G Y C VSN
Sbjct: 587 PSPQ-YSWRINGIPQQHT-----------------QVLFIAKITPNNNGTYACFVSNLAT 628
Query: 716 SDSVEIML 723
+ I+
Sbjct: 629 GRNNSIVK 636
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 2e-55
Identities = 95/564 (16%), Positives = 165/564 (29%), Gaps = 109/564 (19%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------------------- 285
EG +V L Y WY ++
Sbjct: 12 AEGKEVLLLVHNLPQH-LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 286 -ELYLTNITR-----------HQHDSIVKCEVQVSVI-----------GSNRLVEGTDVR 322
L + NI + + Q V S + + V
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVA 130
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDS-IVKCEVHND 375
C+ E + Y W++N+Q +P + L L N+TR+ D+ KCE N
Sbjct: 131 FTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN--DTASYKCETQNP 186
Query: 376 VGKSE-DSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV 433
V DS L+V YGP P + G +NL C NP + +W
Sbjct: 187 VSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN--GTFQ 244
Query: 434 GNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATV---YLKGRPTIISHRTQFGIPG 489
++ L + + + +G Y C+A + T+ +P I S+ +
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Query: 490 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS----------------------VH 527
D + C W + + V S +
Sbjct: 305 DAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 528 NDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
N++ D L+V YGP P G ++L C NP + +W+ +
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID--GN 420
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIP-- 642
+ ++ L + ++ +G Y C+A+ T+ + S + P
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480
Query: 643 -GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
D C + W G+ + S + TL + +
Sbjct: 481 DKDAVAFTCEPEAQNTT--YLWWVNGQSL--PVSPRLQLSNG------NRTLTLFNVTRN 530
Query: 702 HFGVYNCSVSNPYGSD-SVEIMLK 724
Y C + N ++ S + L
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLD 554
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 1e-52
Identities = 98/565 (17%), Positives = 182/565 (32%), Gaps = 97/565 (17%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ V C + W ++ ++L R + G+ +L
Sbjct: 117 SNNSKPVEDKDAVAFTCEPETQDATYLWWVNN------QSLPVSPRLQLS----NGNRTL 166
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
++ V +D A Y+C+ + A RS L VL PD P I +
Sbjct: 167 TLFNVTRNDTASYKCETQNP-VS--ARRSDSVILNVLYGPDAPTI-SPLNTSYRSGENLN 222
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
L C A PPA+ +W V+G L + +++ ++T
Sbjct: 223 LSC-HAASNPPAQYSWF-----------------VNGTFQQSTQELFIPNITVNNSGSYT 264
Query: 213 CQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 271
CQA N+ + + V P K ++ SN + + V L C+ E + Y W
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT--YLW 322
Query: 272 YINDQPVPAAASAT------ELYLTNITRHQHDSIVKCEVQVSVIGSNR----------- 314
++N+Q +P + L L ++TR +C +Q + + +
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTR-NDVGPYECGIQ-NELSVDHSDPVILNVLYG 380
Query: 315 ------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 362
G ++ L C A +NP +Y W I+ EL+++NIT
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPP-AQYSWLIDGNIQQ---HTQELFISNITE- 435
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDVTYGPR----FRARPYSVQVDRGAGVNLLCDVDGNP 418
++ + C+ +N + +T + S V+ V C+ +
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN 495
Query: 419 APEITWIH------EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472
+ W++ ++ + LTL + + A Y C T+ +
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Query: 473 KGRPTIISHRTQF--GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--------D 522
P + G + C + S P P+ +W G +
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ-YSWRINGIPQQHTQVLFIAKITPN 614
Query: 523 DY-----SVHNDVGKSEDSETLDVT 542
+ V N +S +T
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 4e-45
Identities = 90/472 (19%), Positives = 150/472 (31%), Gaps = 85/472 (18%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRY 79
Y + P + + G + L C W + + L
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHA---ASNPPAQYSWFVNGTFQQSTQELF----- 251
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
I + +++ Y CQ G R+ T+TV P P I
Sbjct: 252 --------------IPNITVNNSGSYTCQAHNSDTGLN--RTTVTTITVYAEPPKPFITS 295
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
++ ++ + L C + + W++ +S + + TL
Sbjct: 296 NNSNPVEDEDAVALTCE-PEIQNTTYLWWVNNQSLPVSP---------RLQLSNDNRTLT 345
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCK 259
L + + C QN + L V Y P G ++ L C
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVD-HSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404
Query: 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS------------IVKCEVQV 307
A +NP +Y W I+ EL+++NIT +S
Sbjct: 405 AASNPP-AQYSWLIDGNIQQ---HTQELFISNITE--KNSGLYTCQANNSASGHSRTTVK 458
Query: 308 SVIG-------------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE- 353
++ S + + V C+ EA + Y W++N Q +P +
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT--YLWWVNGQSLPVSPRLQLS 516
Query: 354 -----LYLTNITRHQHDS-IVKCEVHNDVGKSE-DSETLDVTYGP-RFRARPYSVQVDRG 405
L L N+TR +D+ C + N V + D TLDV YGP P G
Sbjct: 517 NGNRTLTLFNVTR--NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG 574
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
A +NL C NP+P+ +W ++ L + + + G Y C S
Sbjct: 575 ANLNLSCHSASNPSPQYSWRIN--GIPQQHTQVLFIAKITPNNNGTYACFVS 624
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-35
Identities = 56/383 (14%), Positives = 97/383 (25%), Gaps = 70/383 (18%)
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW-------------------------IH 426
+ V G V LL +W
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 427 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIISHRT 483
+++ + +L + + G Y A + +P+I S+ +
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS------------------ 525
+ D C + W + + V S
Sbjct: 121 KPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTAS 178
Query: 526 ----VHNDVGKSE-DSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
N V DS L+V YGP P + G +NL C NP + +W
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238
Query: 580 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATV---YLKGRPTIISH 635
++ L + + + +G Y C+A + T+ +P I S+
Sbjct: 239 VN--GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
+ D + C W + + V S TL +
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTT--YLWWVNNQSLPVSPRLQLS--------NDNRTLTL 346
Query: 696 RESRHDHFGVYNCSVSNPYGSDS 718
+ G Y C + N D
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDH 369
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 2e-17
Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 32/205 (15%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + V C + W + ++L R +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG------QSLPVSPRLQLS----N 517
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G+ +L ++ V +D Y C + + RS TL VL PD P I D+
Sbjct: 518 GNRTLTLFNVTRNDARAYVCGIQNSV-SA--NRSDPVTLDVLYGPDTPIISPPDS-SYLS 573
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ L C + P + +W ++G L + ++
Sbjct: 574 GANLNLSC-HSASNPSPQYSW-----------------RINGIPQQHTQVLFIAKITPNN 615
Query: 208 NTTFTCQAQNTADRTYKVARLKLLV 232
N T+ C N A + V
Sbjct: 616 NGTYACFVSNLATGRNNSIVKSITV 640
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 1e-63
Identities = 111/564 (19%), Positives = 190/564 (33%), Gaps = 106/564 (18%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDS-- 299
G + L CK + P ++ WY + +A + L + + D
Sbjct: 19 IGEPITLQCKVDGTP-EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHS--DVGE 75
Query: 300 ----------IVKCEVQVSVIGSN------------RLVEGTDVRLYCKAEANPSHMKYR 337
V + + G V C+ + ++
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSE-PLQVS 134
Query: 338 WYINDQPVPAAASAT--------ELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
WY + + + A+ L + + H C N +G + S L ++
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQ-SHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 390 G---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSP 437
P F +P SV + G C V G +ITW ++ + +V N+
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARV 494
LT+L + AG+Y C AS V G + A + ++ P I ++ + R
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 311
Query: 495 ECSAFSIPPPEKVTWSYRGEEI--------------------GVGSSD--DYS--VHNDV 530
EC P + V W EI + D DY+ HN
Sbjct: 312 ECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 585
G + S +L V P FR +P+ V+ +GA V+L C++ G P +++W + K
Sbjct: 371 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 430
Query: 586 VV----GNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQF 639
++ +L G Y CKAS +G ++ LK P +
Sbjct: 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVG--SDTCVGSITLKAPPRFVKKLSDIS 488
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
+ G+ +++ + P V W EI V SD+ + +TL +
Sbjct: 489 TVVGEEVQLQATIEGAEPIS-VAWFKDKGEI-VRESDNIWISYS----ENIATLQFSRAE 542
Query: 700 HDHFGVYNCSVSNPYGSDSVEIML 723
+ G Y C + N G+ L
Sbjct: 543 PANAGKYTCQIKNEAGTQECFATL 566
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 6e-59
Identities = 90/469 (19%), Positives = 157/469 (33%), Gaps = 75/469 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNI-------TRHQHDSIVK 369
G + L CK + P ++ WY + +A + + N+ H
Sbjct: 19 IGEPITLQCKVDGTP-EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 370 CEVHNDVGKSEDSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW-- 424
C+ N VG S L + P F + V G V C ++G+ +++W
Sbjct: 78 CKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK 137
Query: 425 ----IHEDSD-KVVGNSPNLTLLMTSDDL--AGRYYCKAS-VMGFPEVGAEATVYLKGR- 475
+ +D++ + TL + D G+Y C AS +G + A + L
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG--TASSSAKLTLSEHE 195
Query: 476 --PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI---------------- 516
P + G++ +C P + +TW+ EI
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 517 ----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCD 567
V D Y+ N GK S L V PRF + + V + C
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 568 VDGNPAPEITWIHE-------DSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFP 616
+ G+P ++ W + ++ L M + +D +G Y C+A G
Sbjct: 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED-SGDYTCEAHNAAG-- 371
Query: 617 EVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675
+ ++ +K P + G +EC PP + V+W E+ S
Sbjct: 372 SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ-VSWHKDKRELR--SG 428
Query: 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
Y ++ + +++ I G Y C SN GSD+ +
Sbjct: 429 KKYKIMSE----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 5e-57
Identities = 111/561 (19%), Positives = 189/561 (33%), Gaps = 87/561 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F + A +G +TL C+V G + W K+ L Y M
Sbjct: 7 YFIEPLEHVEAAIGEPITLQCKV---DGTPEIRIAWYKEHTKLRSA------PAYKMQFK 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+ SL I V D Y C+ +G + S A L + PP + +
Sbjct: 58 NNVA--SLVINKVDHSDVGEYTCKAE-NSVGA--VASS-AVLVIKERKLPPSFARKLKDV 111
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ T + EC NG P +++W + ++A++ +TL +
Sbjct: 112 HETLGFPVAFEC-RINGSEPLQVSWYKD------GELLKDDANLQTSFIHNVATLQILQT 164
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ H + C A N A+L L P S L G C
Sbjct: 165 DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT 224
Query: 264 PSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS------------IVKC 303
K W +++ + + L + +T + D+ C
Sbjct: 225 API-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVT--KGDAGQYTCYASNVAGKDSC 281
Query: 304 EVQVSVIG----------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----- 348
Q+ V S + + R CK +P +K WY ++ + +
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRM 340
Query: 349 ---ASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDR 404
S L + N++ DS CE HN G + S +L V P FR +P+ V+ +
Sbjct: 341 SFVESVAVLEMYNLSV--EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK 398
Query: 405 GAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTLLMTSDDLAGRYYCK 455
GA V+L C++ G P +++W + K ++ +L G Y CK
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458
Query: 456 AS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 513
AS +G ++ LK P + + G+ +++ + P V W
Sbjct: 459 ASNDVG--SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS-VAWFKDK 515
Query: 514 EEIGVGSSDDYSVHNDVGKSE 534
EI V SD+ + +
Sbjct: 516 GEI-VRESDNIWISYSENIAT 535
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-54
Identities = 92/571 (16%), Positives = 172/571 (30%), Gaps = 112/571 (19%)
Query: 133 DPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
+PP ++ + + I L+C +G P I W + T ++ + +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQC-KVDGTPEIRIAWYKEHT-------KLRSAPAYKMQ 55
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
++LV+ +TC+A+N+ A L + + P +
Sbjct: 56 FKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETL 115
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSIVK 302
G V C+ + ++ WY + + + A+ L + + H
Sbjct: 116 GFPVAFECRINGSE-PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQ-SHVGQYN 173
Query: 303 CEVQ-----------VSVIGSNR------------LVEGTDVRLYCKAEANPSHMKYRWY 339
C +++ L G C K W
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWA 232
Query: 340 INDQPVPAAA--------SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYG 390
+++ + + L + +T + D+ C N GK S L V
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVT--KGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
Query: 391 PRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLL 442
PRF + + V + C + G+P ++ W + ++ L
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 443 MTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECS 497
M + +D +G Y C+A G + ++ +K P + G +EC
Sbjct: 351 MYNLSVED-SGDYTCEAHNAAG--SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVH--------------------------NDVG 531
PP + V+W E+ S Y + NDVG
Sbjct: 408 LQGTPPFQ-VSWHKDKRELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 591
++ + PRF + + G V L ++G + W D ++V S
Sbjct: 465 SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIVRESD 523
Query: 592 N-----------LTLLMTSDDLAGRYYCKAS 611
N L AG+Y C+
Sbjct: 524 NIWISYSENIATLQFSRAEPANAGKYTCQIK 554
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 4e-49
Identities = 87/483 (18%), Positives = 151/483 (31%), Gaps = 85/483 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
FA + +D +G V CR+ G + W KD L
Sbjct: 103 SFARKLKDVHETLGFPVAFECRI---NGSEPLQVSWYKDGELLKDD------ANLQTSFI 153
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+L+I +Y C + LG S A LT+ PP ++
Sbjct: 154 HNVA--TLQILQTDQSHVGQYNCSA-SNPLGT---ASSSAKLTLSEHEVPPFFDLKPVSV 207
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+C G P +ITW + + TL +
Sbjct: 208 DLALGESGTFKCH-VTGTAPIKITWAKDNREIRPGGNYKMTLVENTA------TLTVLKV 260
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263
+ +TC A N A + A+L V+ P+ + S + + R CK +
Sbjct: 261 TKGDAGQYTCYASNVAGKDSCSAQLG--VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS 318
Query: 264 PSHMKYRWYINDQPVPAA--------ASATELYLTNITRHQHDS------------IVKC 303
P +K WY ++ + + S L + N++ DS
Sbjct: 319 PE-IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE--DSGDYTCEAHNAAGSASS 375
Query: 304 EVQVSVIG---------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----- 349
+ V ++G DV L C+ + P + W+ + + + +
Sbjct: 376 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPP-FQVSWHKDKRELRSGKKYKIM 434
Query: 350 ---SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRG 405
T +++ N+ D +C+ NDVG ++ + PRF + + G
Sbjct: 435 SENFLTSIHILNVDSA--DIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVG 492
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN-----------LTLLMTSDDLAGRYYC 454
V L ++G + W D ++V S N L AG+Y C
Sbjct: 493 EEVQLQATIEGAEPISVAWFK-DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551
Query: 455 KAS 457
+
Sbjct: 552 QIK 554
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 5e-47
Identities = 86/385 (22%), Positives = 128/385 (33%), Gaps = 61/385 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 441
P F V+ G + L C VDG P I W E + + N +L +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSA 498
G Y CKA +G A + + P + + G EC
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 499 FSIPPPEKVTWSYRGEEI--------------------GVGSSD--DYS--VHNDVGKSE 534
P + V+W GE + S Y+ N +G +
Sbjct: 126 NGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184
Query: 535 DSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD------- 584
S L ++ P F +P SV + G C V G +ITW ++ +
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244
Query: 585 --KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQF 639
+V N+ LT+L + AG+Y C AS V G + A + ++ P I ++
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRI 302
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
+ R EC P + V W EI S S +E + L +
Sbjct: 303 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVES------VAVLEMYNLS 355
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLK 724
+ G Y C N GS S LK
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLK 380
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-31
Identities = 71/402 (17%), Positives = 128/402 (31%), Gaps = 75/402 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F ++P +G T C V + W KD+ + P Y M + E
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG------GNYKM--TLVE 250
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG--DTLYT 145
+L + V D +Y C S + G+ S A L V PP R ++ +
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASN-VAGK---DSCSAQLGVQEPP---RFIKKLEPSRIV 303
Query: 146 TEDREIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+D EC G P ++ W D + E + + L +
Sbjct: 304 KQDEHTRYEC-KIGGSPEIKVLWYKDE-------TEIQESSKFRMSFVESVAVLEMYNLS 355
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
+ +TC+A N A LK VK P + ++G DV L C+ + P
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLK--VKEPPVFRKK-PHPVETLKGADVHLECELQGTP 412
Query: 265 SHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS------------IVKCE 304
+ W+ + + + + T +++ N+ D C
Sbjct: 413 P-FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA--DIGEYQCKASNDVGSDTCV 469
Query: 305 VQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----- 350
+++ + V G +V+L E + W+ + + +
Sbjct: 470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEP-ISVAWFKDKGEIVRESDNIWIS 528
Query: 351 ----ATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
L + ++ C++ N+ G E TL V
Sbjct: 529 YSENIATLQFSRAEPA--NAGKYTCQIKNEAGTQECFATLSV 568
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+F + D + VVG V L + + + W KD + D + S+
Sbjct: 479 RFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSENI 533
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+L+ + +Y CQ+ G + FATL+VL
Sbjct: 534 A--TLQFSRAEPANAGKYTCQIKNE-AGT---QECFATLSVL 569
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 1e-60
Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 28/300 (9%)
Query: 33 EPQDQTAVVGSRVTLPCRV------IDKTGVLQWTKDD-------FALGPHRNLSGFDRY 79
P +G VTLPC + + L W + F + S R
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 80 AMIGSD---EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
+ + E + SL ++ + ++D+ Y C T G RS L VL P
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGS---RSVDIWLRVLAKPQNTA 122
Query: 137 IVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
VQ L T + C+S G+PPA+ITW G + + +V TV S
Sbjct: 123 EVQKVQL--TGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF---LSGTVTVTS 177
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
+L P + TC+ ++ + ++ + L V Y P+V +S +N + + L
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 257 YCKAEANPSHMKYRWYINDQPVP--AAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR 314
C A +NP Y W P+P A A +L + + + + +++ C V + +G+ +
Sbjct: 238 TCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLI-CNVT-NALGARQ 295
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 8e-24
Identities = 52/349 (14%), Positives = 87/349 (24%), Gaps = 77/349 (22%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKVVGNSPNLTLLMTSDDLAGR 451
P V G V L C + ++TW + S+
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511
+ ++ + D C + P
Sbjct: 67 FVAARLGAELRNA------------SLRMFGLR---VEDEGNYTCLFVTFPQ-------- 103
Query: 512 RGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DG 570
G L V P+ A VQ+ C G
Sbjct: 104 -------------------GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG 144
Query: 571 NPAPEITWIHED------------SDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618
P +ITW + V + L+ +S CK F +
Sbjct: 145 RPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK- 203
Query: 619 GAEATVYL----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
TV L +I + + + + A + C A S P P WS +
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---- 259
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
++V + + L+IR C+V+N G+ E+ +
Sbjct: 260 -PPFAVAQG-------AQLLIRPVDKPINTTLICNVTNALGARQAELTV 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 47/304 (15%), Positives = 76/304 (25%), Gaps = 68/304 (22%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYR----WYINDQPVPAAASATE------ 353
+V V G V L C + + + W + + A
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 354 --------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSET-LDVTYGPR 392
L + + + + C S + L V P+
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRV-EDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQ 119
Query: 393 FRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHED------------SDKVVGNSPNL 439
A VQ+ C G P +ITW + V +
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW 179
Query: 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL----KGRPTIISHRTQFGIPGDTARVE 495
L+ +S CK F + TV L +I + + + + A +
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEK-PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT 238
Query: 496 CSAFSIPPPEKVTWSYRGEEI--------------GVGSSD--DYS--VHNDVGKSEDSE 537
C A S P P WS + V V N +G +
Sbjct: 239 CDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAEL 298
Query: 538 TLDV 541
T+ V
Sbjct: 299 TVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 8e-21
Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 62/311 (19%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP----AEITW------------IDG 171
V+ P GD+ + L C +++TW
Sbjct: 3 VVQAPTQVPGFLGDS--------VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54
Query: 172 TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
G S + E + ++L + + +TC + + L
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLR 113
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------- 282
V P+ + +L C + + W+ + +P +
Sbjct: 114 VLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
Query: 283 -SATELYLTNITRHQHDSIVKCEVQ-----------------------VSVIGSNRLVEG 318
+ T L++ + V C+V+ +S +N +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQ 232
Query: 319 TDVRLYCKAEANPSHMKYRWYINDQPVP--AAASATELYLTNITRHQHDSIVKCEVHNDV 376
+ L C A +NP Y W P+P A A +L + + + + +++ C V N +
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLI-CNVTNAL 291
Query: 377 GKSEDSETLDV 387
G + T+ V
Sbjct: 292 GARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 30/248 (12%), Positives = 59/248 (23%), Gaps = 41/248 (16%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP-----EITW-----------IHEDSDKVVGNSPNLT 594
P V G V L C + ++TW H+ S L
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 595 LLMTSDDL----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
+ G Y C + + + +P + +
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 126
Query: 639 FGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
+ C + PP ++TW + + + S I+
Sbjct: 127 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM---PNTSQVPGFLSGTVTVTSLWILVP 183
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQR 757
S C V + + + +P + ++G + + C
Sbjct: 184 SSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWY--LGQNEATLTCD- 240
Query: 758 KVK-KPPP 764
+ P P
Sbjct: 241 -ARSNPEP 247
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 4e-59
Identities = 111/780 (14%), Positives = 202/780 (25%), Gaps = 139/780 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ +++ T + + + CR L W + G + + SD
Sbjct: 33 RLSIQKDILTIKANTTLQITCRG---QRDLDWLWPNNQSGSEQRVE-----VTECSDGLF 84
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED 148
+L I V+ +D Y+C I + ++
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYR-ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ + + C+ + + + + S D ++ + +
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPD---GNRISWDSKKG-----FTIPSYMISYA 195
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEGTDVRLYCKAEANPS-H 266
C+A+ + + + ++V Y V +S L G + L C A +
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSI-------------------------- 300
+ + W T +
Sbjct: 256 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315
Query: 301 VKCEVQVSVIGSNRL------------VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 348
K V V + G VR+ K P + +WY N P+ +
Sbjct: 316 KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESN 374
Query: 349 ---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET--LDVTYGPRFRARPYSVQVD 403
+ L + ++ + + N + K + S L V P+ + VD
Sbjct: 375 HTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD 433
Query: 404 R---GAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
G L C V P P I W + ++ + +
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519
G + L +A +C A
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA--------------------- 532
Query: 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
N VG+ E + VT GP +P +Q V+L C D + +TW
Sbjct: 533 -------VNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 580 HEDSDKVVGNSPN-----------------------------LTLLMTSDDLAGRYYCKA 610
+ + + L S G Y C A
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644
Query: 611 S-VMGFPEVGAEATVYLKGR--PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYR 666
+ + R PTI + Q G++ V C+A PPP+ + W
Sbjct: 645 QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWFKD 703
Query: 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
E + + + L IR R + G+Y C + G VE +
Sbjct: 704 NETLV--EDSGIVLKDG------NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 5e-48
Identities = 104/625 (16%), Positives = 173/625 (27%), Gaps = 106/625 (16%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
VG ++ L C + W + ++ + ++
Sbjct: 230 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT-TED 148
+L I V D Y C S+G L + + V P ++L T
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSG-LMT---KKNSTFVRVHEKPFVAFGSGMESLVEATVG 345
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ + G PP EI W + SN + L + E
Sbjct: 346 ERVRIPAK-YLGYPPPEIKWYKNGIPLESNHTIKAG-----------HVLTIMEVSERDT 393
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS--NRLVEGTDVRLYCKAEANPSH 266
+T N + + + L+V P++ + S + GT L C A P
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326
WY + A + + +TN +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTN--------------------------PYPCEEWRS 487
Query: 327 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
E K N + + T L ++ KCE N VG+ E +
Sbjct: 488 VEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA-NVSALYKCEAVNKVGRGERVISFH 546
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
VT GP +P +Q V+L C D + +TW + + L + +
Sbjct: 547 VTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506
AT++ I+ + D C A
Sbjct: 606 L-------------DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA-------- 644
Query: 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVT----YGPRFRARPYSVQVDRGAGV 562
+ K +T P + G +
Sbjct: 645 --------------------QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESI 684
Query: 563 NLLCDVDGNPAPEITW------IHEDSDKVVGNSPN-LTLLMTSDDLAGRYYCKAS-VMG 614
+ C GNP P+I W + EDS V+ + LT+ + G Y C+A V+G
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744
Query: 615 FPEVGAEATVYLKGRPTIIS-HRTQ 638
EA ++G + RT
Sbjct: 745 --CAKVEAFFIIEGAQEKTNLERTH 767
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 2e-38
Identities = 65/517 (12%), Positives = 136/517 (26%), Gaps = 106/517 (20%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-----------TELYLTNITRHQHD 365
T +++ C+ + + W + + L +
Sbjct: 45 ANTTLQITCRGQRDLD-----WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPK-VIGNDT 98
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAP 420
KC S + P + + ++ V + C +
Sbjct: 99 GAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 421 --------EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVY 471
E ++ + + + T+ AG +C+A + + V
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Query: 472 LKGRP---TIISHRTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIG---------- 517
+ R + G+ + C+A + W Y +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 518 ------------------VGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFR---ARPY 552
V SD Y+ + + ++S + V P
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKVVGNSPNLTLLMTSDDLAGRYYC 608
V+ G V + G P PEI W +S+ + LT++ S+ G Y
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 609 KAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGI----PGDTARVECSAFSIPPPEKVTW 663
+ + + ++ + P I + G T + C+ ++IPPP + W
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 664 SYRGEEIGVGSSDDYSVLEDP---------------------------LKEGIKSTLIIR 696
++ EE + +P ++ K+ +
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLL 733
+ +Y C N G I + + L
Sbjct: 519 IQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITL 555
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-30
Identities = 79/503 (15%), Positives = 136/503 (27%), Gaps = 116/503 (23%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ A VG RV +P + G ++W K+ L + +
Sbjct: 333 GSGMESLVEATVGERVRIPAKY---LGYPPPEIKWYKNGIPLESNHTI------------ 377
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIVQGDTLY 144
+ + L I V D Y + T + + +S +L V VPP + +
Sbjct: 378 -KAGHVLTIMEVSERDTGNYTVIL-TNPISK-EKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 145 TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTV--------- 194
L C + P P I W +N + +
Sbjct: 435 YQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 195 ------------------KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
K+ L + + + + C+A N R +V V P
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH--VTRGP 551
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 296
++++ + E V L+C A+ + WY
Sbjct: 552 --EITLQPDMQPTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLD- 607
Query: 297 HDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-ELY 355
W +N + + +
Sbjct: 608 ---------------------------------------TLWKLNATMFSNSTNDILIME 628
Query: 356 LTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVT----YGPRFRARPYSVQVDRGAGVNL 410
L N + D C + K +T P + G + +
Sbjct: 629 LKNASLQ--DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 411 LCDVDGNPAPEITW------IHEDSDKVVGNSPN-LTLLMTSDDLAGRYYCKAS-VMGFP 462
C GNP P+I W + EDS V+ + LT+ + G Y C+A V+G
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-- 744
Query: 463 EVGAEATVYLKGRPTIIS-HRTQ 484
EA ++G + RT
Sbjct: 745 CAKVEAFFIIEGAQEKTNLERTH 767
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 126 bits (316), Expect = 9e-30
Identities = 54/419 (12%), Positives = 101/419 (24%), Gaps = 80/419 (19%)
Query: 369 KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-- 426
C S +LD+ PR + + + + + C G + W +
Sbjct: 13 LCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQ 67
Query: 427 ---EDSDKVVGNSPN-----LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY----LK 473
E +V S LT+ + G Y C + Y +
Sbjct: 68 SGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIA 127
Query: 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----------------- 516
T + C + Y +
Sbjct: 128 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 187
Query: 517 -GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRAR----PYSVQVDRGAGVNLLCD 567
S + + + V G R + +++ G + L C
Sbjct: 188 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247
Query: 568 VDGNPAPEITW-------------------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYC 608
I + + ++ LT+ + G Y C
Sbjct: 248 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 609 KAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
AS + + V+ K S G+ R+ PPPE + W
Sbjct: 308 AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPE-IKWYK 366
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G + ++++ L I E G Y ++NP + ++
Sbjct: 367 NGIPL----ESNHTIKAG-------HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 1e-10
Identities = 26/211 (12%), Positives = 59/211 (27%), Gaps = 24/211 (11%)
Query: 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGI-PGDTARVECSAFSIPPPEKV 661
+ C + P + + I T ++ C
Sbjct: 9 VALWLCVETR----AASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQ--RDL--- 59
Query: 662 TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
W + + G + + D TL I + + G Y C + + +
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSD---GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYV 116
Query: 722 MLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC 781
++ +S + + + VVI C +V+ +
Sbjct: 117 YVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL--GSISNL------NVSLCARYPEK 168
Query: 782 KESDNSSNISDIKLEFRTGSSVSNVHLDYAG 812
+ + + IS + + G ++ + + YAG
Sbjct: 169 RFVPDGNRIS---WDSKKGFTIPSYMISYAG 196
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 1e-09
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
++QT +G + + C + + W KD+ L + ++
Sbjct: 668 TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN------ETLVEDSGIVL----KD 717
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
G+ +L I V +D+ Y CQ + LG A + + + + +
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSV-LGC---AKVEAFFIIEGAQEKTNLERTHHHH 770
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 7e-54
Identities = 68/320 (21%), Positives = 112/320 (35%), Gaps = 32/320 (10%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDF----- 65
+++ G + +G+ V L C K + W K
Sbjct: 3 SMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN 62
Query: 66 ------ALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAI 119
++G +R + D ++ + + L+D+ Y C+ +T G
Sbjct: 63 VAIYNPSMGVSVLAPYRERVEFLR-PSFTDGTIRLSRLELEDEGVYICEFATFPTGN--- 118
Query: 120 RSRFATLTVLVPPDPPRIVQGDTL---YTTEDREIELECISANGKPPAEITWIDGTGTVM 176
R LTV+ P L +D+ + C SANGKPP+ ++W
Sbjct: 119 RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178
Query: 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+E TV S L P +E H + C DR + L V+Y P
Sbjct: 179 E----YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN--VQYEP 232
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITR 294
+V + N ++ DV+L CKA+ANP +Y W + +P A L+
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292
Query: 295 HQHDSIVKCEVQVSVIGSNR 314
+ CE + IG+
Sbjct: 293 YSLAGTYICEAT-NPIGTRS 311
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 1e-23
Identities = 52/318 (16%), Positives = 98/318 (30%), Gaps = 55/318 (17%)
Query: 130 VPPDPPRIVQG-DTLYTTEDREIELECISANGKPPA---EITW-------IDGTGTVMSN 178
+ DP ++VQ D++Y ++ L C AN P ++TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 179 VRVTEEASVDGRRTTVKS-----TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ V+ A R ++ T+ L+ + + C+ + ++L L V
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVM 128
Query: 234 YAPKVQVS----VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---- 285
P + V+ + + + + C + W +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 286 ------ELYLTNITRHQHDSIVKC---------------------EVQVSVIGSNRLVEG 318
L +R H + C EV + N ++
Sbjct: 189 TVTVISRYRLVP-SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247
Query: 319 TDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDSIVKCEVHNDV 376
DV+L CKA+ANP +Y W + +P A L+ + CE N +
Sbjct: 248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPI 307
Query: 377 GKSEDSETLDVTYGPRFR 394
G +++T
Sbjct: 308 GTRSGQVEVNITEAAALE 325
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 8e-19
Identities = 48/323 (14%), Positives = 85/323 (26%), Gaps = 73/323 (22%)
Query: 387 VTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPE----ITWIHEDSDK---------- 431
+ P + S+ G V L C +TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 432 --------------VVGNSPN---LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 474
+ S + L + G Y C+ + ++ + +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
Query: 475 RPTI------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS--- 525
+PT R + G C++ + PP V+W R +
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGT 189
Query: 526 -----------------------VHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAG 561
V+ + + ++S TL+V Y P + +
Sbjct: 190 VTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMD 249
Query: 562 VNLLCDVDGNPAP-EITWIHED----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
V L C D NP E W + N + LAG Y C+A+ +G
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 309
Query: 616 PEVGAEATVYLKGRPTIISHRTQ 638
+ V + + H
Sbjct: 310 RS--GQVEVNITEAAALEHHHHH 330
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 20/193 (10%)
Query: 309 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTN 358
V+ + + + + C + W + L
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200
Query: 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGN 417
+R H + C V+ + + ++S TL+V Y P + + V L C D N
Sbjct: 201 -SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADAN 259
Query: 418 PAP-EITWIHED----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
P E W + N + LAG Y C+A+ +G + V
Sbjct: 260 PPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS--GQVEVN 317
Query: 472 LKGRPTIISHRTQ 484
+ + H
Sbjct: 318 ITEAAALEHHHHH 330
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 82.9 bits (204), Expect = 4e-17
Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 35/217 (16%)
Query: 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG-----VNLLCDV-DGNPAPEITWIHE 581
G E L V P + G + C +G P ++W
Sbjct: 114 FPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR 173
Query: 582 DSDKVVGNSP-----------NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL--KG 628
+ L+ + + C + + + ++ L +
Sbjct: 174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN---YHMDRFKESLTLNVQY 230
Query: 629 RP--TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
P TI + + ++ C A + PP + W+ + G L
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL----- 285
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ G Y C +NP G+ S ++ +
Sbjct: 286 ------FFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 1e-15
Identities = 38/314 (12%), Positives = 80/314 (25%), Gaps = 74/314 (23%)
Query: 305 VQVSVIGSNRLVEGTDVRLYCKAE---ANPSHMKYRWYINDQPVPAAASATE-------- 353
V V S GTDV L+C + + W + +
Sbjct: 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVL 75
Query: 354 ------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSE-TLDVTYGPRFR 394
+ L+ + + + + CE + +S+ L V P
Sbjct: 76 APYRERVEFLRPSFTDGTIRLSRLEL-EDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 395 ARPYSVQVDRGAG-----VNLLCDV-DGNPAPEITWIHEDSDKVVGNSP----------- 437
+ G + C +G P ++W +
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 438 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL--KGRP--TIISHRTQFGIPGDTAR 493
L+ + + C + + + ++ L + P TI + + +
Sbjct: 195 RYRLVPSREAHQQSLACIVN---YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 494 VECSAFSIPPPEKVTWSYRGEEI---------------GVGSSDD--YS--VHNDVGKSE 534
+ C A + PP + W+ + + S Y N +G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS 311
Query: 535 DSETLDVTYGPRFR 548
+++T
Sbjct: 312 GQVEVNITEAAALE 325
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 42/221 (19%)
Query: 541 VTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPE----ITWIHEDSDK---------- 585
+ P + S+ G V L C +TW +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 586 --------------VVGNSPN---LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628
+ S + L + G Y C+ + ++ + +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
Query: 629 RPTI------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682
+PT R + G C++ + PP V+W R + G ++ +
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK----GEAEYQEIRN 185
Query: 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ S + SR H C V+ + L
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL 226
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 3e-48
Identities = 60/474 (12%), Positives = 124/474 (26%), Gaps = 76/474 (16%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-------ELYLTNITRHQHDS 366
+ + L +A + + W + + + +T
Sbjct: 59 EVDVSASITLQVLVDAPGN-ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMT-ETQAG 116
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
+ ++ T+ + + R + L+C + P P + W+
Sbjct: 117 EYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVL 175
Query: 427 EDSDKVVGNSPN-----LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH 481
DS + + + C A E T+ L P +
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-TL 234
Query: 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-------------- 527
F G+ + C A + +TW + + G+ + S +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294
Query: 528 ----------------NDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLCDVD 569
+S + + A ++D+
Sbjct: 295 SSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 570 GNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEAT 623
P TW K + N +++ G Y A + T
Sbjct: 352 AYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA--QFTKMFT 409
Query: 624 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG-------EEIGVGSSD 676
+ ++ +P +++ ++ C + P P TW EEI G +
Sbjct: 410 LNIRRKPQVLAE-------ASASQASCFSDGYPLPS-WTWKKCSDKSPNCTEEITEGVWN 461
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ + + STL + E+ + C N G+ I+L FP
Sbjct: 462 RKANRKVFGQWVSSSTLNMSEAIKG--FLVKCCAYNSLGTSCETILLNSPGPFP 513
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 5e-35
Identities = 56/510 (10%), Positives = 130/510 (25%), Gaps = 81/510 (15%)
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
G+ + + +D + + + P L P + +
Sbjct: 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAA 57
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ I L+ + W+ ++ + ++V+
Sbjct: 58 VEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-------VSMVILK 109
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
E + Q+ A + + + ++ R +E D L C +E+
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYF---RKMENQDA-LVCISES 165
Query: 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---IVKCEVQVSV---------- 309
P W + D + + + + H+ ++C + +
Sbjct: 166 VPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224
Query: 310 ---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 360
+ L G + + CKA W + ++ + +
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 361 RHQHDSIVK-------------CEVHNDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRG 405
C + S + + A ++D+
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 406 AGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
P TW K + N +++ G Y A
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG------ 513
+ T+ ++ +P +++ ++ C + P P TW
Sbjct: 402 A--QFTKMFTLNIRRKPQVLAE-------ASASQASCFSDGYPLPS-WTWKKCSDKSPNC 451
Query: 514 -EEIGVGSSDDYSVHNDVGKSEDSETLDVT 542
EEI G + + G+ S TL+++
Sbjct: 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMS 481
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 5e-35
Identities = 59/425 (13%), Positives = 115/425 (27%), Gaps = 85/425 (20%)
Query: 367 IVKCEVHNDVGKSEDSETLDVT------------YGPRFRARPYSVQVDRGAGVNLLCDV 414
++ +ND + S V+ +V+VD A + L V
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 415 DGNPAPEITWIHEDS--------DKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVG 465
D W+ + S D ++ +L ++ AG Y
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT--NYT 130
Query: 466 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD--- 522
TV ++ R F + + C + S+P P V W + +
Sbjct: 131 ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPI-VEWVLCDSQGESCKEESPA 189
Query: 523 ---------------DY--SVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRGAGVNL 564
D N++G+ T+D+ P+ ++V G + +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKV--GEPLWI 247
Query: 565 LCDV-DGNPAPEITWIHED---------------SDKVVGNSPNLTLLMTSDDLAGRYYC 608
C N +TW E+ +++ + + + + G Y C
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 609 KASVMGFPEVGAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
+S A V + + I S + + P TW++
Sbjct: 308 SSSK----HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTF 362
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML-- 723
+ + + ++ + G Y N + L
Sbjct: 363 SRKSF---PCEQKGLDNG-------YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 724 --KPQ 726
KPQ
Sbjct: 413 RRKPQ 417
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 63/508 (12%), Positives = 120/508 (23%), Gaps = 99/508 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
E V + +TL V W +L + +R +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV------ 103
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
S+ I + Y + E + T+++ + +
Sbjct: 104 ---SMVILKMTETQAGEYLLFIQ----SEATNYTILFTVSI---RNTLLYTLRRPYFRKM 153
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ + L CI + P + W + E + K VL E
Sbjct: 154 ENQDALVCI-SESVPEPIVEW-------VLCDSQGESCKEESPAVVKKEEKVL---HELF 202
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
T C A+N + + P+ + L G + + CKA
Sbjct: 203 GTDIRCCARNEL-GRECTRLFTIDLNQTPQTTLP---QLFLKVGEPLWIRCKAVHVNHGF 258
Query: 268 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK-------------CEV--------- 305
W + ++ + + C
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Query: 306 -------QVSVIGSNRLVE---GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL- 354
++ S+ E + + +A P ++ W + + P +
Sbjct: 319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP-QIRCTWTFSRKSFPCEQKGLDNG 377
Query: 355 -YLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLC 412
++ H+H ND + TL++ P+ + + C
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LAEASASQASC 429
Query: 413 DVDGNPAPEITWIHEDSDKVVGNSP--------------------NLTLLMTSDDLAGRY 452
DG P P TW + TL M+
Sbjct: 430 FSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLV 489
Query: 453 YCKAS-VMGFPEVGAEATVYLKGRPTII 479
C A +G + G I
Sbjct: 490 KCCAYNSLG--TSCETILLNSPGPFPFI 515
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 1e-20
Identities = 39/404 (9%), Positives = 105/404 (25%), Gaps = 59/404 (14%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMI 82
R + + ++ L C +++W D +
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD------------SQGESC 183
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+ E + +C LG +R T+ + P
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCA-RNELGR--ECTRLFTIDLNQTP----QTTLPQ 236
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
L+ + + C + + +TW + R ++
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAE 261
+ +TC + ++ + + + + + + + + + +
Sbjct: 297 VARNDTGYYTCSSSKHPSQSA-----LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 262 ANPSHMKYRWYINDQPVPAAASATE----LYLTNITRHQ----------HDSIVKCEVQV 307
A P ++ W + + P + + +HQ D+ +
Sbjct: 352 AYP-QIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Query: 308 SVIGSNR-LVEGTDVRLYCKAEANP------SHMKYRWYINDQPVPAAASATELYLT--- 357
++ + L E + + C ++ P + + + +
Sbjct: 411 NIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 358 --------NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRF 393
N++ +VKC +N +G S ++ L+ F
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF 514
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 170 bits (431), Expect = 5e-46
Identities = 79/407 (19%), Positives = 125/407 (30%), Gaps = 69/407 (16%)
Query: 374 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW------IH 426
+++ S F + P RG V L C + + P I W +
Sbjct: 5 SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA 64
Query: 427 EDSDKVVGNSPNLTLLMTSDDL-------AGRYYCKASV-MGFPEVGAEATVYLKGRPTI 478
D PN +LL+ + G Y C+AS+ + A V + G
Sbjct: 65 LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 479 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-------------- 523
+S + GDT ++C P P + W +++ D
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 524 --------YS--VHNDVGKSEDSE-TLDVTYGPR------FRARPYSVQVDRGAGVNLLC 566
Y N +E + + P F RP +V G L C
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 567 DVDGNPAPEITWIHED-------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEV 618
V G P P TW+ + + NL + +DD +G Y C + +
Sbjct: 244 CVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE--NI 301
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
A A + + P ++H + EC+ P P V W G+ + SD
Sbjct: 302 SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVI--PSDY 358
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ ++ S L I G Y C N G+ L
Sbjct: 359 FQIVGG-------SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 3e-40
Identities = 80/354 (22%), Positives = 108/354 (30%), Gaps = 60/354 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN----ITRHQHDSIVK-- 369
+ G +V L C AE++ +W + + + L N I H K
Sbjct: 34 MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPD 93
Query: 370 -----CEVHNDVGKSEDSET--LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEI 422
CE S S T + V RF ++ S+ G V L C+V G+P P I
Sbjct: 94 EGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTI 153
Query: 423 TWIH---------EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 473
W DS VV S L + +G Y C A G EA V +
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 474 GRPTIISH-------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526
P + I G A +EC PPP TW E I + S YS+
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS-FTWLRGEEVIQL-RSKKYSL 271
Query: 527 H-----------------------NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVN 563
S L V P F P ++ +
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIE 331
Query: 564 LLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
C V G P P + W + + NL +L G Y C A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAE 385
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-31
Identities = 74/403 (18%), Positives = 128/403 (31%), Gaps = 68/403 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F EP D + G V L C V++W KD L L DR + +
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL----ALGMDDRKQQLPNGS 78
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTL 143
++ D+ YQC+ S G G I SR A + V P +
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGS--IISRTAKVMVAGPLRFLSQTESIT---- 132
Query: 144 YTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLT 201
+ L+C G P I W + + D R + S L ++
Sbjct: 133 -AFMGDTVLLKC-EVIGDPMPTIHWQKNQ--------QDLNPIPGDSRVVVLPSGALQIS 182
Query: 202 PKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVK---YAPKVQVSVIGSNRLVEGTDVRLY 257
+ + + C A+N A RT A +++L + + + +EG D L
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 258 CKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDS------------ 299
C P + W ++ + + + L ++N+T DS
Sbjct: 243 CCVSGYP-PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT--DDDSGTYTCVVTYKNE 299
Query: 300 IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA- 349
+ +++V + E D+ C P W N V +
Sbjct: 300 NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVIPSDY 358
Query: 350 ----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ L + + + + +C N+ G ++ S L V
Sbjct: 359 FQIVGGSNLRILGVVK-SDEGFYQCVAENEAGNAQSSAQLIVP 400
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 4e-30
Identities = 58/402 (14%), Positives = 109/402 (27%), Gaps = 66/402 (16%)
Query: 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKP 162
R+ ++ + V T + L C A
Sbjct: 2 RWGSELES--------SHHHHHHGGRRSL---HFVSEPSDAVTMRGGNVLLNCS-AESDR 49
Query: 163 PA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221
I W + + ++ +G + + ++ + + + C+A
Sbjct: 50 GVPVIKWKKDGLILALGMDDRKQQLPNG--SLLIQNILHSRHHKPDEGLYQCEASLGDSG 107
Query: 222 TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 281
+ K++V + +S S G V L C+ +P W N Q +
Sbjct: 108 SIISRTAKVMVAGPLRF-LSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQKNQQDLNPI 165
Query: 282 ASAT--------ELYLTNITRH-----------QHDSIVKCEVQVSVIGSNRL------- 315
+ L ++ + + E +V ++ L
Sbjct: 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL 225
Query: 316 --------VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITR 361
+EG D L C P + W ++ + + + L ++N+T
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYP-PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTD 284
Query: 362 HQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V S L V P F P ++ + C V G P P
Sbjct: 285 -DDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343
Query: 422 ITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ W + + NL +L G Y C A
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAE 385
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 52/293 (17%), Positives = 89/293 (30%), Gaps = 56/293 (19%)
Query: 522 DDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW-- 578
D + +++ S F + P RG V L C + + P I W
Sbjct: 1 DRWG--SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 579 ----IHEDSDKVVGNSPNLTLLMTSDDL-------AGRYYCKASV-MGFPEVGAEATVYL 626
+ D PN +LL+ + G Y C+AS+ + A V +
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Query: 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-YSVLEDP 684
G +S + GDT ++C P P + W +++ D VL
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPS- 176
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-----VEIMLKPQKSFPLLLI----- 734
L I + GVY CS NP + + V I+ P L +
Sbjct: 177 ------GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 735 LTGVIGCVVILVALTMVVILCQ-----------RKVKKPPPGNGIEHHVTADG 776
+ + G V+ C + ++ ++ +
Sbjct: 231 VIAIEG--------KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS 275
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-18
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 35/210 (16%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYA 80
+R+ F P + A+ G L C V +G W + + + +Y+
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRS-----KKYS 270
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
++ G +L I V DD Y C V+ S A LTVLV PP +
Sbjct: 271 LL-----GGSNLLISNVTDDDSGTYTCVVTY-KNEN---ISASAELTVLV---PPWFLNH 318
Query: 141 -DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
LY E +IE EC + +GKP + W+ V+ + + S L
Sbjct: 319 PSNLYAYESMDIEFEC-AVSGKPVPTVNWMKNGDVVIPSDYF---------QIVGGSNLR 368
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + + C A+N A A+L
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 3e-43
Identities = 63/474 (13%), Positives = 119/474 (25%), Gaps = 84/474 (17%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
G ++RL C W E + C + +
Sbjct: 50 VGDEIRLLCTDPGFVK-----WTFEILDETNENKQNEWITEKAEA-TNTGKYTCTNKHGL 103
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN- 435
S + V + S+ + C + + + +
Sbjct: 104 SNSI---YVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL 160
Query: 436 ----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-----ISHRT 483
P +++ S +C G + + + ++ +S +
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI-------------------------GV 518
G+ V C+ + TW +
Sbjct: 221 YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280
Query: 519 GSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGN 571
+D + +N G + + TL+V P +V V+ G V+L+ + +
Sbjct: 281 RVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAF 340
Query: 572 PAPE-ITWIHE--------------DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
P PE WI+ +++ + L L G Y S
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV- 399
Query: 616 PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675
VY+ +P I+++ ++C A P P + W + S+
Sbjct: 400 -NAAIAFNVYVNTKPEILTYDR-----LVNGMLQCVAAGFPEPT-IDWYFCPGTEQRCSA 452
Query: 676 DDYSVLEDPLKEG------IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
V L + I S H G C N G S
Sbjct: 453 SVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-39
Identities = 66/406 (16%), Positives = 112/406 (27%), Gaps = 60/406 (14%)
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
++ + G S+ S + P + V G + LLC G + W
Sbjct: 13 VLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTF 68
Query: 427 EDSDKVV-GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQ 484
E D+ G+Y C + V+++ + R+
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNK----HGLSNSIYVFVRDPAKLFLVDRSL 124
Query: 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV-------------- 530
+G + V C + P + + +
Sbjct: 125 YGKEDNDTLVRCPL-TDPEV-TNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRL 182
Query: 531 ---------GKSEDSETLDVTYGPRFRARPY------SVQVDRGAGVNLLCDVDGNPAP- 574
GKS SE + P F+A P S + G + C + +
Sbjct: 183 CLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV 242
Query: 575 EITWIHEDSDKVVGNSPNLTLLMTSDDL--------------AGRYYCKAS-VMGFPEVG 619
TW E+S + N + +G + C A+ G V
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 620 AEATVYLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
V KG I + T F G+ + + P PE W Y +D
Sbjct: 303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTF-TDKWED 361
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
Y E+ S L + + G Y VSN + ++ +
Sbjct: 362 YPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-35
Identities = 70/522 (13%), Positives = 129/522 (24%), Gaps = 119/522 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
D VG + L C G ++WT + ++E
Sbjct: 42 GKSDLIVRVGDEIRLLCTD---PGFVKWTFEILDE----------------TNENKQNEW 82
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ +Y C G S + V P + +LY ED +
Sbjct: 83 ITEKAEATNTGKYTCTNKHG-------LSNSIYVFVRDPAKLF--LVDRSLYGKEDNDTL 133
Query: 153 LECISANGKPPAEITWIDGTGT-VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
+ C + G + ++R D + ++ + K+ +H
Sbjct: 134 VRC-PLTDPEVTNYSLKGCQGKPLPKDLRFI----PDPKAGI----MIKSVKRAYHRLCL 184
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPK---VQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268
C ++ + L V+ A K V S L EG + + C + S +
Sbjct: 185 HCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 269 YRWYINDQPVPAAASATELYLTNITR-----------HQHDS------------IVKCEV 305
W + + + +DS
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303
Query: 306 QVSVI------------GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 353
+ V+ + + +G +V L + EA P +W ++
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Query: 354 LYLTNITRHQHDSIV------------KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ 401
+ V N + + + V P +
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI------LT 417
Query: 402 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN---------------------LT 440
DR L C G P P I W + ++ +
Sbjct: 418 YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
+ ++ G CKA +G + A KG H
Sbjct: 478 IDSSAFKHNGTVECKAYNDVG--KTSAYFNFAFKGNNKEQIH 517
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 2e-27
Identities = 43/312 (13%), Positives = 95/312 (30%), Gaps = 36/312 (11%)
Query: 443 MTSDDLAGRYYCKASVMGFPEVG---AEATVYLKGRPTIISHRTQFGI-PGDTARVECSA 498
M A + C ++ + G + P+I ++ + GD R+ C+
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 499 FSIPPPEKVTWSYRGEEIGVGSSDD----YSVH-NDVGK--------SEDSETLDVTYGP 545
P V W++ + + + + GK +S + V
Sbjct: 61 -----PGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPA 115
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----SPNLTLLMTS- 599
+ S+ + C + + + + P +++ S
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSV 175
Query: 600 --DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-----ISHRTQFGIPGDTARVECSA 652
+C G + + + ++ +S + G+ V C+
Sbjct: 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI 235
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
+ TW + + + D E ++TL I +R + GV+ C +N
Sbjct: 236 KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE-RQATLTISSARVNDSGVFMCYANN 294
Query: 713 PYGSDSVEIMLK 724
+GS +V L+
Sbjct: 295 TFGSANVTTTLE 306
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 3e-24
Identities = 53/373 (14%), Positives = 96/373 (25%), Gaps = 71/373 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
++ G T+ C + + + W +++ + + +
Sbjct: 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG---DFNY 269
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT- 145
E +L I ++D + C + + TL V+ +T
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTF----GSANVTTTLEVVDKGFINIFPMINTTVFV 325
Query: 146 TEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ ++L P P WI T + S + S L LT K
Sbjct: 326 NDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPK-SENESNIRYVSELHLTRLK 383
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
T+T N+ + V P++ N L C A P
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVY--VNTKPEILTYDRLVN-------GMLQCVAAGFP 434
Query: 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLY 324
WY Q S V V + S+ G V
Sbjct: 435 EP-TIDWYFCPGT-----------------EQRCSASVLPVDVQTLNSSGPPFGKLV--- 473
Query: 325 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
+ + + +H+ V+C+ +NDVGK+
Sbjct: 474 ---------------------------VQSSIDSSAF-KHNGTVECKAYNDVGKTSAYFN 505
Query: 385 LDVTYGPRFRARP 397
+ + P
Sbjct: 506 FAFKGNNKEQIHP 518
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 597 MTSDDLAGRYYCKASVMGFPEVG---AEATVYLKGRPTIISHRTQFGI-PGDTARVECSA 652
M A + C ++ + G + P+I ++ + GD R+ C+
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P V W++ + + + I ++ + G Y C+ +
Sbjct: 61 -----PGFVKWTFEILDETNENKQ--------------NEWITEKAEATNTGKYTCTNKH 101
Query: 713 PYGSDSVEIMLKPQKSFPLLLILTGVIGCVVIL 745
+ + P K F + L G ++
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLV 134
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 3e-40
Identities = 80/410 (19%), Positives = 128/410 (31%), Gaps = 78/410 (19%)
Query: 379 SEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 437
+ S ++T P + VD + + C+ GNPAP W + P
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 438 NLTLLMTSDDL-------------AGRYYCKASVMGFPEVGA----EATVYLKGRPTIIS 480
+++ S L G Y C A + G + + P
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN----KFGTALSNRIRLQVSKSPLWPK 120
Query: 481 H--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------GVGS 520
G ++C+ P + W E V
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180
Query: 521 SDD---YS--VHNDVG---KSEDSETLDVT-------YGPRF---RARPYSVQVDRGAGV 562
D YS + ++ TL V P F + S V RG +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 563 NLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
L C G P P+I W + D K + L + S++ +G Y+C AS MG
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG- 299
Query: 616 PEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
+ +V +K P + + PG+ R+ C A P P V W GE +
Sbjct: 300 -SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAP 357
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + T+I R+++ VY C+ SN +G +
Sbjct: 358 PNPNREVAG-------DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-34
Identities = 64/360 (17%), Positives = 120/360 (33%), Gaps = 68/360 (18%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSIV 368
++ + C+A+ NP+ + W N + A L + + + +
Sbjct: 31 PRDNILIECEAKGNPA-PSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYE 89
Query: 369 ---KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEI 422
+C N G + + L V+ P + V V GA + L C+ G P+P I
Sbjct: 90 GEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVI 149
Query: 423 TWIHEDSDKVVGNS-----PNLTLLMTS---DDLAGRYYCKAS--VMGFPEVGAEATVYL 472
W+ + + + N L ++ D+ Y C A + T+ +
Sbjct: 150 FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 473 KGRPTIISHRTQFGIP-----------GDTARVECSAFSIPPPEKVTWSYRGEEI----- 516
+ F P G +EC A +P P+ + W +G ++
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD-IAWYKKGGDLPSDKA 268
Query: 517 ------------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA 560
V D +Y N +G + ++ V P + P ++ + G
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE 328
Query: 561 GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 611
L+C +GNP P + W+ + + + PN + D + Y C S
Sbjct: 329 DGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-31
Identities = 74/446 (16%), Positives = 133/446 (29%), Gaps = 102/446 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+D + + C G WT++ N++ R +M
Sbjct: 23 SAKDHIVDPRDNILIECEA---KGNPAPSFHWTRNSRFF----NIAKDPRVSMRRRSGTL 75
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED 148
+ + YQC G S L V P P+ D + E
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARN-KFGT--ALSNRIRLQVSKSPLWPKENL-DPVVVQEG 131
Query: 149 REIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP-KKEH 206
+ L+C G P I W+ + + RV++ + L + +
Sbjct: 132 APLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN---------GDLYFSNVMLQD 182
Query: 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH 266
T ++C A+ T + + V+ + + E PS
Sbjct: 183 MQTDYSCNARFHFTHTIQ---------QKNPFTLKVLTTRGVAE-----------RTPSF 222
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326
M + + Q V + G D+ L C
Sbjct: 223 MYPQGTASSQMV-------------------------------------LRGMDLLLECI 245
Query: 327 AEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDS-IVKCEVHNDVGKSE 380
A P+ WY +P+ + E L +TN++ + DS C N +G
Sbjct: 246 ASGVPTP-DIAWYKKGGDLPSDKAKFENFNKALRITNVS--EEDSGEYFCLASNKMGSIR 302
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+ ++ V P + P ++ + G L+C +GNP P + W+ + + + PN
Sbjct: 303 HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPN 361
Query: 441 LLMTSDDL---------AGRYYCKAS 457
+ D + Y C S
Sbjct: 362 REVAGDTIIFRDTQISSRAVYQCNTS 387
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 41/232 (17%), Positives = 66/232 (28%), Gaps = 36/232 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQ--KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----L 58
T Q + L L+ +A+ Q + G + L C +GV +
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDI 254
Query: 59 QWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPA 118
W K L + E + +L I V +D Y C S +G
Sbjct: 255 AWYKKGGDLPSDK-----------AKFENFNKALRITNVSEEDSGEYFCLASNK-MGS-- 300
Query: 119 IRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177
++ V P + L + L C ANG P + W M
Sbjct: 301 -IRHTISVRVKA---APYWLDEPKNLILAPGEDGRLVC-RANGNPKPTVQW-------MV 348
Query: 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
N + A + R T++ + + C N A +
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 20/105 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ EP++ G L CR G +QW + L + +
Sbjct: 314 YWLDEPKNLILAPGEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPP----NPNREVAG 366
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
D ++ + A YQC S G A ++VL
Sbjct: 367 D-----TIIFRDTQISSRAVYQCNTSNEH-GY---LLANAFVSVL 402
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 7e-40
Identities = 69/393 (17%), Positives = 110/393 (27%), Gaps = 71/393 (18%)
Query: 388 TYGPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 444
+YGP F +P G+ V L C NP W ++ + P+ +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE--LKMGPDSRYRLV 59
Query: 445 SDDL----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTA 492
+ DL AG Y C A+ V EA++ + G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSD----------------------DYS--VHN 528
CS P W + + +YS +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 529 DVGKSEDSETLDVTYG------------PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEI 576
+ S + P G V L C GNP P+I
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239
Query: 577 TWIHEDSD---KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
W D K + + P L + + G Y C+A + G + + + +P
Sbjct: 240 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG--RDTYQGRIIIHAQPDW 297
Query: 633 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ G R C A P P V W G+ + +S + +
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPL---ASQNRIEVSG-------G 346
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + + G+Y C N +G+ L
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 9e-35
Identities = 64/348 (18%), Positives = 111/348 (31%), Gaps = 55/348 (15%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKC 370
V L C+A ANP YRW +N + + +L ++N + + +C
Sbjct: 21 AEEKVTLTCRARANPP-ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 371 EVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEITWIHE 427
N G E +L + F A V++ G GV C PA W+
Sbjct: 80 VATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN 139
Query: 428 DSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS----------VMGFPEVGAEA 468
+ + + T+ +L G Y C A+ F ++ A
Sbjct: 140 EFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199
Query: 469 TVYLKGRPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI---------- 516
+ P+I + + + G +EC AF P P+ + W
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSKWLSSEPL 258
Query: 517 ----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
V D Y N G+ + + P + + D G+ + C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 569 DGNPAPEITWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
G P P + W+ + +++ + L + +G Y C A
Sbjct: 319 SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 366
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 79/405 (19%), Positives = 129/405 (31%), Gaps = 76/405 (18%)
Query: 29 KFAMEPQDQTAVVGS---RVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM 81
F +P GS +VTL CR +W + L + RY +
Sbjct: 6 VFEEQPAHTLFPEGSAEEKVTLTCRA---RANPPATYRWKMNGTELKMGPD----SRYRL 58
Query: 82 IGSDEEGDYSLEIY-PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
+ L I PV D YQC + G + SR A+L + +
Sbjct: 59 VAG------DLVISNPVKAKDAGSYQCVATNA-RGT--VVSREASLRFGFLQEFSAEER- 108
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS--TL 198
D + TE + C P W+ DGRR ++ L
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLN--------EFPNFIPADGRRFVSQTTGNL 160
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYK-----VARLKLLVK----YAPKVQVSVIGSNRLV 249
+ + ++C A + D K ++L L + YAP ++ +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDS-------- 299
G V L C A NP + +W D + ++E L++ N+ D
Sbjct: 221 TGQMVTLECFAFGNPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVD--FEDEGTYECEAE 277
Query: 300 ----IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 346
+ ++ + I G+D+R C A P RW + QP+
Sbjct: 278 NIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLA 336
Query: 347 AAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+ S EL + + + + +C N G S L V
Sbjct: 337 SQNRIEVSGGELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTV 380
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-29
Identities = 67/378 (17%), Positives = 121/378 (32%), Gaps = 69/378 (18%)
Query: 134 PPRIVQ--GDTLYT--TEDREIELECISANGKPPAEITWI-DGTG-TVMSNVRVTEEASV 187
P + TL+ + + ++ L C A PPA W +GT + + R V
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRL---V 59
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSN 246
G ++ P K ++ C A N + A L+ + +
Sbjct: 60 AG------DLVISNPVKAKDAGSYQCVATNARGTVVSREASLR--FGFLQEFSAEERDPV 111
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITR---- 294
++ EG V C + + YRW +N+ P A LY+
Sbjct: 112 KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171
Query: 295 -----------HQHDSIVKCEVQVSVIGSN----------------RLVEGTDVRLYCKA 327
S+ Q+S+ + + G V L C A
Sbjct: 172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA 231
Query: 328 EANPSHMKYRWYINDQPVPAAASATE--LYLTNITRHQHDS-IVKCEVHNDVGKSEDSET 384
NP + +W D + ++E L++ N+ D +CE N G+
Sbjct: 232 FGNPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVD--FEDEGTYECEAENIKGRDTYQGR 288
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-----DSDKVVGNSPNL 439
+ + P + + D G+ + C G P P + W+ + +++ + L
Sbjct: 289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL 348
Query: 440 TLLMTSDDLAGRYYCKAS 457
+ +G Y C A
Sbjct: 349 RFSKLVLEDSGMYQCVAE 366
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 6e-18
Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 23/199 (11%)
Query: 542 TYGPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 598
+YGP F +P G+ V L C NP W ++ + P+ +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE--LKMGPDSRYRLV 59
Query: 599 SDDL----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTA 646
+ DL AG Y C A+ V EA++ + G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
CS P W + + V G L I ++ G Y
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS---QTTG---NLYIAKTEASDLGNY 173
Query: 707 NCSVSNPYGSDSVEIMLKP 725
+C ++ + + K
Sbjct: 174 SCFATSHIDFITKSVFSKF 192
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 40/234 (17%)
Query: 1 MREMTRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV--- 57
+ +T+ + + L+L+ QY A P D A+ G VTL C G
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA---FGNPVP 237
Query: 58 -LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGE 116
++W K D + S L I V +D+ Y+C+ G
Sbjct: 238 QIKWRKLDGSQTSKWLSSE--------------PLLHIQNVDFEDEGTYECEAENI-KGR 282
Query: 117 PAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175
+ + + P + ++ C A+GKP + W+
Sbjct: 283 ---DTYQGRIIIHA---QPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRWL------ 329
Query: 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
R + + R L + + + C A+N Y A L
Sbjct: 330 ----RDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 54/421 (12%), Positives = 111/421 (26%), Gaps = 81/421 (19%)
Query: 367 IVKCEVHNDVGKSEDSETLDVT------------YGPRFRARPYSVQVDRGAGVNLLCDV 414
++ +ND + S V+ +V+VD A + L V
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 415 DGNPAPEITW------IHEDSDKVVGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEV 464
D W ++ + N ++++ MT AG Y
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQ-AGEYLLFIQSEAT--NY 129
Query: 465 GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524
TV ++ R F + + C + S+P P V W + +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPI-VEWVLCDSQGESCKEESP 188
Query: 525 SVH--------------------NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564
+V N++G+ + + + + + G + +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 565 LCD-VDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYC 608
C V N +TW + E + + ++ G Y C
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 609 KASVMGFPEVGAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 665
+S A V + + I S + + P + TW++
Sbjct: 308 SSSK----HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTF 362
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725
+ + L++ ++ + G Y N + L
Sbjct: 363 SRKSF----PCEQKGLDN------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 726 Q 726
+
Sbjct: 413 R 413
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 3e-30
Identities = 40/447 (8%), Positives = 97/447 (21%), Gaps = 76/447 (17%)
Query: 83 GSDEEGDYS-----LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
G+ + + + + Y S L P +
Sbjct: 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSE----------SPEDLGCALRPQSSGTV 52
Query: 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
+ + I L+ + + W+ ++ + +
Sbjct: 53 YEAAAVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-------S 104
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
+V+ E + Q+ A + + ++ + L
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVS--IRNTLLYTLRR--PYFRKMENQDALV 160
Query: 258 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS------------------ 299
C +E+ P W + D + + + + H+
Sbjct: 161 CISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219
Query: 300 ----IVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELY 355
I + + + L G + + CKA W + ++ +
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279
Query: 356 LTNITRHQHDSIV-------------KCEVHNDVGKSEDSETLDVTYGPRFRARP--YSV 400
+ C + S + + A
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDY 336
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCK 455
++D+ P TW K + N +++ G Y
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 456 AS-VMGFPEVGAEATVYLKGRPTIISH 481
A + T+ ++ H
Sbjct: 397 AENDDA--QFTKMFTLNIRSGTKHHHH 421
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 3e-27
Identities = 41/407 (10%), Positives = 102/407 (25%), Gaps = 82/407 (20%)
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268
+++ +++ D L + V + + + L +A ++
Sbjct: 28 SSYPMVSESPEDLGCA------LRPQSSGT-VYEAAAVEVDVSASITLQVLVDAPG-NIS 79
Query: 269 YRWYINDQPVPAAASA-------TELYLTNIT------------------RHQHDSIVKC 303
W + + + +T ++
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
+ ++ L C +E+ P W + D + + + +
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Query: 364 HDSIV---KCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD-VDGNPA 419
H+ +C N++G+ + + + + + G + + C V N
Sbjct: 199 HELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 420 PEITW------IHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKASVMGFPEV 464
+TW + E + + ++ G Y C +S
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK----HP 313
Query: 465 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----- 516
A V + + I S + + P + TW++ +
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQK 372
Query: 517 -----------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFR 548
+Y ND + TL++ G +
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 50/407 (12%), Positives = 99/407 (24%), Gaps = 78/407 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
E V + +TL V W +L + +R
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLV---DAPGNISCLWVFKHSSLNCQPHFDLQNRG----- 101
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
S+ I + Y + + + T+++ + +
Sbjct: 102 ----VVSMVILKMTETQAGEYLLFIQSE-ATN---YTILFTVSIR---NTLLYTLRRPYF 150
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ + L CI + P + W + E + K VL
Sbjct: 151 RKMENQDALVCI-SESVPEPIVEW-------VLCDSQGESCKEESPAVVKKEEKVL---H 199
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264
E T C A+N R + Q + + L G + + CKA
Sbjct: 200 ELFGTDIRCCARNELGRECTRL---FTIDLNQTPQTT-LPQLFLKVGEPLWIRCKAVHVN 255
Query: 265 SHMKYRWYINDQPVPAAASAT-ELYLTNITRHQHDSIVKCEVQVS------VIGSNR--- 314
W + ++ + Y TN T + V + S
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 315 ----------------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 352
+ + + + +A P ++ W + + P
Sbjct: 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ-IRCTWTFSRKSFPCEQKGL 374
Query: 353 E----LYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDVTYGPRFR 394
+ + +H ND + TL++ G +
Sbjct: 375 DNGYSISKFCNH--KHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 5e-18
Identities = 26/214 (12%), Positives = 53/214 (24%), Gaps = 24/214 (11%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
Q VG + + C+ + + L W ++ AL
Sbjct: 228 QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY--STNRT 285
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ V +D Y C S S+ A +T++ +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHP-------SQSALVTIVEKGFINATNSSEDYEI 338
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
+ E P TW + + + ++ +
Sbjct: 339 DQYEEFCFSV-RFKAYPQIRCTWTFSRKSFPCEQKGLDN----------GYSISKFCNHK 387
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
H + A+N + K+ L ++ K
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLN--IRSGTKHH 419
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 5e-39
Identities = 75/469 (15%), Positives = 139/469 (29%), Gaps = 82/469 (17%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
+ P G V + C D+ +L P + L G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPL----PKKELL-----------LPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + +
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKN 103
Query: 151 IELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A + + G + V E A V T + +++HH
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHG 154
Query: 209 TTFTCQAQNTADR------TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
F+C+ + A +L P ++ L T + C +
Sbjct: 155 ANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDG 214
Query: 263 NP--SHMKYRWYINDQPVPAAASA------TELYLTNITRHQHDSIVKCEVQVS------ 308
S + + DQ + + + ++ + + C V +
Sbjct: 215 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET 274
Query: 309 --------------VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL 354
++ + EGT+V + C+A + P A +L
Sbjct: 275 LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK-VTLNGVPAQPLGPRA----QL 329
Query: 355 YLTNITRHQHDSIVKCEVHNDVG----KSEDSETLDVTYGPRFRAR--PYSVQVDRGAGV 408
L T + C +V + L V YGPR R P + +
Sbjct: 330 LL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388
Query: 409 NLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+C GNP PE+ + + + + P + + DL G Y C+A
Sbjct: 389 TPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRAR 433
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 142 bits (358), Expect = 3e-36
Identities = 66/471 (14%), Positives = 123/471 (26%), Gaps = 77/471 (16%)
Query: 306 QVSVIGSNRLV-EGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
Q SV S ++ G V + C + P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDG-NPAPE 421
DS C + G+S L V + P R P G + L C V+G P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 422 ITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG-------- 465
+T + + T+L+ D + C+ + P+
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 466 -AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE---------- 514
+ ++ + V CS + P +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 515 -----------EIGVGSSDDY----SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRG 559
+ +V E +T+ + P +V G
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 298
Query: 560 AGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV-MGFPEV 618
V + C+ + + +G L L T +D + C A++ + +
Sbjct: 299 TEVTVKCEAHPRAKVTLNGVPAQP---LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355
Query: 619 GAEATVYL--KGRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673
T L P + C A+ P PE + G
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPL-- 412
Query: 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
D G Y C + G + E+ +
Sbjct: 413 -----------------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 5e-29
Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 88/476 (18%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV 187
V P + +G ++ + C S + P + T + + +
Sbjct: 2 TSVSPSKVILPRGGSV--------LVTC-STSCDQPMLLGI----ETPLPKKELLLPGN- 47
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
+ V ++ C + + A+ L V + P+ +
Sbjct: 48 --------NRKVYELSNVQEDSQPMCYSNCPDGQ--STAKTFLTVYWTPERVELAPLPSW 97
Query: 248 LVEGTDVRLYCKAEAN--PSHMKYRWYINDQPVPAAASATE----LYLTNITRHQHDSIV 301
G ++ L C+ E +++ ++ + + E + R H +
Sbjct: 98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 302 KCEVQVSV-----------------------------IGSNRLVEGTDVRLYCKAEANP- 331
C ++ + + L T + C +
Sbjct: 158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217
Query: 332 -SHMKYRWYINDQPVPAAASA------TELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
S + + DQ + + + ++ + + C V E +T
Sbjct: 218 VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT 444
+ + P +V G V + C+ + + +G L L T
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP---LGPRAQLLLKAT 334
Query: 445 SDDLAGRYYCKASV-MGFPEVGAEATVYL--KGRPTIISH---RTQFGIPGDTARVECSA 498
+D + C A++ + + T L P + C A
Sbjct: 335 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394
Query: 499 FSIPPPEKVTWSYRGEEIG-------VGSSDD--YS--VHNDVGKSEDSETLDVTY 543
+ P PE + G V + Y + G+ T++V
Sbjct: 395 WGNPLPE-LKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 6e-26
Identities = 57/396 (14%), Positives = 109/396 (27%), Gaps = 67/396 (16%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + P VG +TL C+V + + + L R +G
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL---------KREPAVG 137
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGI----LGEPAIRSRFATLTVLVPPDPPRIVQ 139
E + + A + C+ + L S L V P P +
Sbjct: 138 EPAEV--TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
D + + C P +E G + R+ + + K+++
Sbjct: 196 SPR-VLEVDTQGTVVCSLDGLFPVSEAQVHLALG----DQRLNPTVTYGNDSFSAKASVS 250
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCK 259
+T ++ TC + + + AP V ++ + EGT+V + C+
Sbjct: 251 VTA-EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT---KPEVSEGTEVTVKCE 306
Query: 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR----- 314
A + P A +L L T + C + V G
Sbjct: 307 AHPRAK-VTLNGVPAQPLGPRA----QLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 315 ---------------------LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 353
E + C+A NP + + +
Sbjct: 361 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL-PELKCLKDGTFPLPIGE--- 416
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
+TR + C + G+ T++V
Sbjct: 417 --SVTVTRD-LEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 45/212 (21%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIG 83
Y + G+ VT+ C + V L
Sbjct: 281 YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-------------- 326
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
L + D+ + C + + G+ +++ L VL P
Sbjct: 327 ------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380
Query: 144 YTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
E+ + C A G P E+ + DGT + G TV
Sbjct: 381 TWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPI-----------GESVTV-------- 420
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234
T+ C+A++T + + V
Sbjct: 421 -TRDLEGTYLCRARSTQGEVTREVTVN--VLS 449
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 8e-39
Identities = 78/393 (19%), Positives = 117/393 (29%), Gaps = 75/393 (19%)
Query: 390 GPRFRARPYSVQV---DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL---- 442
GP F P V V L C+V GNP P I W +D +G +++
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 443 ----MTSDDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH--RTQFGIPGDTA 492
AG Y C A+ G EA + + T G
Sbjct: 65 LINNPNKTQDAGTYQCIATN----SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGM 120
Query: 493 RVECSAFSIPPPEKVTWSYRGEEI------------------GVGSSD--DYS--VHNDV 530
+ C W + V SD +Y+ V N V
Sbjct: 121 VLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Query: 531 GKSE----------DSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
+ ++ + Y P+ P +V ++G V L C GNP P I W
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 580 HED------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
D + ++ L + + AG Y C A G + A+ + +P
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG--KNVAKGQLTFYAQPNW 298
Query: 633 ISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ ++ EC A P P W G+ + + D +E
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPL---LTRDRIQIEQ-------G 347
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
TL I G+Y C N +G L
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-36
Identities = 69/349 (19%), Positives = 106/349 (30%), Gaps = 57/349 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKC 370
E V+L C+ + NP RW +N V L + N + Q +C
Sbjct: 22 EEKKVKLSCEVKGNPK-PHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 371 EVHNDVGKSEDSE-TLDVTYGPRFRARPYS-VQVDRGAGVNLLCDV-DGNPAPEITWIHE 427
N G E L Y F+ R S V V RG G+ LLC + WI
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
Query: 428 D-----SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS--VMGFPEVGAEATVYLKGRPT 477
+ ++ + L + D G Y C + V +G + L+
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 478 IISHRTQFGIP---------GDTARVECSAFSIPPPEKVTWSYRGEEI------------ 516
+ + + + G T ++EC A P P + W +
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT-ILWRRADGKPIARKARRHKSNG 258
Query: 517 -----GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
D Y N GK+ L P + + V V C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 568 VDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
+G P P W+ D++ L + + + AG Y C A
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAE 367
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 3e-31
Identities = 71/382 (18%), Positives = 123/382 (32%), Gaps = 71/382 (18%)
Query: 131 PPDPPRIVQ--GDTLY--TTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEA 185
P P VQ ++ +E+++++L C G P I W +GT +
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGM------- 53
Query: 186 SVDGRRTTVKSTLVLT-PKKEHHNTTFTCQAQNTA--DRTYKVARLKLLVKYAPKVQVSV 242
D R + V +L++ P K T+ C A N+ + + KL Y +
Sbjct: 54 --DFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREA---KLQFAYLENFKTRT 108
Query: 243 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS------ATELYLTNITRHQ 296
+ + G + L C + + Y W N+ P LY+ + +
Sbjct: 109 RSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSD 168
Query: 297 -------------HDSIVKCEVQVSVIGSNRLVE-----------------GTDVRLYCK 326
+ ++ + + + E GT V+L C
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF 228
Query: 327 AEANPSHMKYRWY-INDQPVPAAASATE----LYLTNITRHQHDS-IVKCEVHNDVGKSE 380
A NP W + +P+ A + L + N Q D+ +C N GK+
Sbjct: 229 ALGNPVP-TILWRRADGKPIARKARRHKSNGILEIPNFQ--QEDAGSYECVAENSRGKNV 285
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGN 435
L P + + V V C +G P P W+ D++
Sbjct: 286 AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345
Query: 436 SPNLTLLMTSDDLAGRYYCKAS 457
L + + + AG Y C A
Sbjct: 346 QGTLNITIVNLSDAGMYQCVAE 367
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 2e-28
Identities = 77/406 (18%), Positives = 124/406 (30%), Gaps = 78/406 (19%)
Query: 29 KFAMEPQDQTAVV---GSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAM 81
F EP + +V L C V G ++W + + + RY++
Sbjct: 7 VFVQEPSHVMFPLDSEEKKVKLSCEV---KGNPKPHIRWKLNGTDVDIGMD----FRYSV 59
Query: 82 IGSDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
+ SL I DA YQC + G I SR A L + +
Sbjct: 60 VDG------SLLINNPNKTQDAGTYQCIATNS-FGT--IVSREAKLQFAYLENFKTRTR- 109
Query: 141 DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
T+ + + L C WI + + N R + + L
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET---------GNLY 160
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV--------KYAPKVQVSVIGSNRLVEG 251
+ ++ +TC NT + L+ +Y PK++V + +G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 252 TDVRLYCKAEANPSHMKYRWY-INDQPVPAAASATE----LYLTNITRHQHDS------- 299
T V+L C A NP W + +P+ A + L + N Q D+
Sbjct: 221 TTVKLECFALGNPVP-TILWRRADGKPIARKARRHKSNGILEIPNFQ--QEDAGSYECVA 277
Query: 300 -----IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 345
+ Q++ I + V CKA P YRW N P+
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPL 336
Query: 346 PAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
L +T + + +C N G S L V
Sbjct: 337 LTRDRIQIEQGTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSV 381
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 37/234 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
+V L+ + G + +Y + P+ A G+ V L C G + W
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA---LGNPVPTILW 239
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
+ D + ++ R + + LEI +D Y+C G+
Sbjct: 240 RRAD-----GKPIARKARR------HKSNGILEIPNFQQEDAGSYECVAENS-RGK---N 284
Query: 121 SRFATLTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179
LT P VQ + ++ + + EC ANG+P W+
Sbjct: 285 VAKGQLTFYA---QPNWVQIINDIHVAMEESVFWEC-KANGRPKPTYRWL---------- 330
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + R + TL +T + C A+N + A L ++ +
Sbjct: 331 KNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 62/410 (15%), Positives = 109/410 (26%), Gaps = 87/410 (21%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIH--------EDSDKVVGN 435
L V P + +P V L C ++GN + +W E + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 436 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH-RTQFGIPGD 490
+L L G Y C A G + + + I G
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAET----PAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVG---------------------------SSD- 522
+++C + P +TW R SD
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 523 -DYS--VHNDVGKSE-----------DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
Y N E + P + + G + C
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236
Query: 569 DGNPAPEITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFP 616
NP + D + L T + G Y C+ +G P
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 617 EVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 674
+ + + P + G + C +P P V WS+ + + S
Sbjct: 297 QK-HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPL---S 351
Query: 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+V + S L+I+ ++ G Y C +N +G E +++
Sbjct: 352 GGRATVTD--------SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-32
Identities = 66/408 (16%), Positives = 109/408 (26%), Gaps = 70/408 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+P + + L C + D+ W KD + + +
Sbjct: 8 VLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL---------R 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTT 146
+ + SL D+ YQC T G SR + P
Sbjct: 59 KDEGSLVFLRPQASDEGHYQCFAET-PAGV--ASSRVISFRKTYLIASPAKTH--EKTPI 113
Query: 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL-----T 201
E R +L+C+ N P ITW N VT+ RR T L T
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF----DRRITAGPDGNLYFTIVT 169
Query: 202 PKKEHHNTTFTCQAQNTADRTYKV-ARLKLLV-------KYAPKVQVSVIGSNRLVEGTD 253
+ + C A+N A V ++ V V G
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229
Query: 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRH-------- 295
+YC +NP ++ N + V L
Sbjct: 230 TMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 296 ---QHDSIVKCEVQVSVIG----------SNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342
K ++++V+ + +G DV + CK P+ W N
Sbjct: 289 VDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNA 347
Query: 343 QPVPA---AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+P+ + + L + + C N+ G + V
Sbjct: 348 KPLSGGRATVTDSGLVIKGVKN-GDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 54/369 (14%), Positives = 86/369 (23%), Gaps = 78/369 (21%)
Query: 230 LLVKYAPKVQV---SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286
L V P ++ V+ E L C E N +KY W + +
Sbjct: 1 LPVDKYPVLKDQPAEVL----FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA 56
Query: 287 LYLTN----ITRHQHD--------------SIVKCEVQVSVIG---------SNRLVEGT 319
L R Q + +EG
Sbjct: 57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATE------------LYLTNITRHQHDSI 367
+L C W A T+ LY T +T+ I
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 368 VK--CEVHNDVGKSE-----------DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 414
K C N E + P + + G + C
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236
Query: 415 DGNPAPEITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFP 462
NP + D + L T + G Y C+ +G P
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 463 EVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520
+ + + P + G + C +P P V WS+ + + S
Sbjct: 297 QK-HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPL---S 351
Query: 521 SDDYSVHND 529
+V +
Sbjct: 352 GGRATVTDS 360
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 71/399 (17%), Positives = 117/399 (29%), Gaps = 86/399 (21%)
Query: 126 LTVLVPPDPPRIVQ--GDTLYTTEDREIELECISANGKP-PAEITWI-DGTGTVMSNVRV 181
L V P + + L+ E+ LEC G + +W DG +
Sbjct: 1 LPVDKYP---VLKDQPAEVLFR-ENNPTVLEC-IIEGNDQGVKYSWKKDGK-----SYNW 50
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQV 240
E + + +LV + + C A+ A + +V + A +
Sbjct: 51 QEH---NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107
Query: 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE------------LY 288
+EG +L C W A T+ LY
Sbjct: 108 HEK---TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Query: 289 LTNITRHQ----------------HDSIVKCEVQVSVIGSNRL----------------- 315
T +T+ + +V E ++ + +
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA 224
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRHQHD 365
G +YC +NP ++ N + V L D
Sbjct: 225 KAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL--PED 281
Query: 366 S-IVKCEVHNDVGKSED-SETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVDGNPAPEI 422
+ CEV N VGK + S L V P++ +P V V +G V + C V G PAP +
Sbjct: 282 EGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV 341
Query: 423 TWIHE----DSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
W H + L + + G Y C+A+
Sbjct: 342 VWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 380
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-20
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 35/232 (15%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
V + + ++ + E +D A G + C +
Sbjct: 190 EEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY---GSNPMGYPNY 246
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIR 120
K+ ++++G + + L + +D+ Y C+V G +G+ +
Sbjct: 247 FKNG------KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG-VGK--PQ 297
Query: 121 SRFATLTVLVPPDPPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMS 177
LTV+ P+ Q + + +++ + C G P + W +
Sbjct: 298 KHSLKLTVVS---APKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNA------ 347
Query: 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ GR T S LV+ K + C+A N Y ++
Sbjct: 348 ------KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 59/345 (17%), Positives = 106/345 (30%), Gaps = 82/345 (23%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P F +P SV + G C V G +ITW ++ + + N + + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN--REIRPGGNYKMTLVENT--- 60
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ + +V D + C A
Sbjct: 61 ------ATLTVLKVTKG----------------------DAGQYTCYA------------ 80
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQ-VDRGAGVNLLCDVD 569
N GK S L V PRF + + V + C +
Sbjct: 81 ----------------SNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVG 619
G+P ++ W ++++ V + L + S + +G Y C+A G
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG--SAS 182
Query: 620 AEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678
+ ++ +K P + G +EC PP + V+W E+ S Y
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ-VSWHKDKRELR--SGKKY 239
Query: 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
++ + +++ I G Y C SN GS + +
Sbjct: 240 KIMSE----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 53/257 (20%), Positives = 88/257 (34%), Gaps = 35/257 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F ++P +G T C V TG + W KD+ + P Y M +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHV---TGTAPIKITWAKDNREIRPG------GNYKM--T 55
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG--DT 142
E +L + V D +Y C S + G+ S A L V PPR ++ +
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASN-VAGK---DSCSAQLGVQE---PPRFIKKLEPS 108
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+D EC G P ++ W + + + + L +
Sbjct: 109 RIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESV------AVLEMYN 161
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
+ +TC+A N A LK VK P ++G DV L C+ +
Sbjct: 162 LSVEDSGDYTCEAHNAAGSASSSTSLK--VKEPPVF-RKKPHPVETLKGADVHLECELQG 218
Query: 263 NPSHMKYRWYINDQPVP 279
P + W+ + + +
Sbjct: 219 TPP-FQVSWHKDKRELR 234
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 21/192 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 595
P F +P SV + G C V G +ITW ++ + +V N+ LT+
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSA 652
L + AG+Y C AS V G + A + ++ P I ++ + R EC
Sbjct: 66 LKVTKGDAGQYTCYASNVAG--KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 653 FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712
P + V W EI S S +E + L + + G Y C N
Sbjct: 124 GGSPEIK-VLWYKDETEIQESSKFRMSFVES------VAVLEMYNLSVEDSGDYTCEAHN 176
Query: 713 PYGSDSVEIMLK 724
GS S LK
Sbjct: 177 AAGSASSSTSLK 188
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 57/277 (20%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHD 298
L G C +K W +++ + + L + +T + D
Sbjct: 16 DLALGESGTFKCHVTGTA-PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT--KGD 72
Query: 299 S------------IVKCEVQVSV---------IGSNRLV-EGTDVRLYCKAEANPSHMKY 336
+ C Q+ V + +R+V + R CK +P +K
Sbjct: 73 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKV 131
Query: 337 RWYINDQPVPAA--------ASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
WY ++ + + S L + N++ DS CE HN G + S +L V
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLS--VEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPN 438
P FR +P+ V+ +GA V+L C++ G P +++W + K +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 439 LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+ +L G Y CKAS +G ++ LK
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG--SYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 31/206 (15%)
Query: 29 KFAMEPQD-QTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
+F + + + C++ G + W KD+ + ++ M
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDE------TEIQESSKFRM-- 148
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DT 142
S E LE+Y + ++D Y C+ G S +L V PP +
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAA-GS---ASSSTSLKVKEPP---VFRKKPHP 201
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ T + ++ LEC G PP +++W + S + + +++ +
Sbjct: 202 VETLKGADVHLEC-ELQGTPPFQVSWHKDKRELRSGKKYK--IMSENFL----TSIHILN 254
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARL 228
+ C+A N V +
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F +P + G+ V L C + + W KD L +Y + E
Sbjct: 194 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG------KKYKI--MSEN 245
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
S+ I V D YQC+ S +G + ++T+
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASN-DVGS---YTCVGSITL 282
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-35
Identities = 60/376 (15%), Positives = 101/376 (26%), Gaps = 72/376 (19%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT-------ELYLTNITRHQHDSIV- 368
T + CKA NP + W +D +L + V
Sbjct: 18 NSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 76
Query: 369 ----KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD---GNPAP 420
C N G + + + A V RG + C + +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136
Query: 421 EITWIHEDSDKVVGNS---------PNLTLLMTS---DDLAGRYYCKAS--VMGFPEVGA 466
++W ++ + + P+ L + +D Y C+ + G + A
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 196
Query: 467 EATVYLKGRPTI--------ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
+ P + + + T + C A P P W E
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPS-FRWYKFIEGTTR 255
Query: 519 GSSDDYS--------------------------VHNDVGKSEDSETLDVTYGPRFRARPY 552
+ + V+N VG L VT + P
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 315
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS- 611
+ VD G C GNP ++W+ D + + L + + G Y C
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQCFVRN 374
Query: 612 VMGFPEVGAEATVYLK 627
AEA+ LK
Sbjct: 375 DRES----AEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 1e-34
Identities = 81/407 (19%), Positives = 126/407 (30%), Gaps = 95/407 (23%)
Query: 390 GPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLL 442
GP F P + + G + C GNP PEI WI D + S + L+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 443 MTS--------DDLAGRYYCKASVMGFPEVGA----EATVYLKGRPTIISH-RTQFGIPG 489
+ A Y C A + G+ + V + + I G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARN----QFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 118
Query: 490 DTARVECSAFSIP--PPEKVTWSYRGEEIG----------------------VGSSD--- 522
++A ++C S E V+W EE VG D
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178
Query: 523 DYS--VHNDVG---KSEDSETLDVTYGPRFRARPY-------SVQVDRGAGVNLLCDVDG 570
Y + + + ++ V P + P +++ ++LLC G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 571 NPAPEITWIHED-----------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEV 618
PAP W +D+V S L + + +G+Y C + +G
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG--GE 296
Query: 619 GAEATVYLKGRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
E + + + I TQ G A C P V+W G+ I G S+
Sbjct: 297 SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT-VSWMKDGKAI--GHSE- 352
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L I + + G+Y C V N S LK
Sbjct: 353 -------------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 70/397 (17%), Positives = 127/397 (31%), Gaps = 70/397 (17%)
Query: 134 PPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P ++ + + + E+EC A+G P EI WI GT + +V + S DG+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSNRLVE 250
++E H + C A+N + ++ +V + V+ ++
Sbjct: 62 V-FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE---HVIR 117
Query: 251 GTDVRLYCKAEANPSHMK--YRWYINDQPVPAAASAT----------ELYLTNITRHQHD 298
G + C + + W+ +++ + EL++ +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 299 SIVKCEVQVSVIGSNRL------------------------------VEGTDVRLYCKAE 328
+C + + G RL + + L C A+
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 329 ANPSHMKYRWYINDQPVPAAASATE----------LYLTNITRHQHDSIV-KCEVHNDVG 377
P+ +RWY + + L + + DS C V+N VG
Sbjct: 238 GFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCVVNNSVG 294
Query: 378 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP 437
L VT + P + VD G C GNP ++W+ D + +
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES 353
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK 473
L + + G Y C AEA+ LK
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRES----AEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 82/412 (19%)
Query: 29 KFAMEPQDQTAVV-GSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP ++ + + C+ +G + W + D + I
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSD-----GTAVGDVPGLRQIS 56
Query: 84 SDEEGDYSLEIYPV------MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
SD L P Y C G +I SR + +V
Sbjct: 57 SD----GKLVFPPFRAEDYRQEVHAQVYACLARN-QFG--SIISRDVHVRAVVAQYYEAD 109
Query: 138 VQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V + ++C+ S ++W DG+ +
Sbjct: 110 VN--KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY-----DGKYLVLP 162
Query: 196 S-TLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLV-------KYAPKVQVSVIGSN 246
S L + E ++ C+ ++ +++ K + AP+ V
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNITRHQ 296
L+ + L C A+ P+ +RWY + + L + +
Sbjct: 223 ELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--V 279
Query: 297 HDS------------IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMK 335
DS E ++V + + G C+ NP
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-T 338
Query: 336 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
W + + + S + L + ++ + + + +C V ND +E S L +
Sbjct: 339 VSWMKDGKAIG--HSESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 44/277 (15%), Positives = 78/277 (28%), Gaps = 28/277 (10%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ----WTKDDFALGPHRNLSGFDRYAMIG 83
Q + + + + G+ + C + W D+ +Y ++
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKYLVLP 162
Query: 84 SDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQ 139
S L I V +D YQC+ L S V+ P PR
Sbjct: 163 S-----GELHIREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSSAPRTPA 216
Query: 140 G--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
L I L C A G P W V ++ R V T
Sbjct: 217 LVQKPLELMVAHTISLLCP-AQGFPAPSFRWYKFIEGTTRKQAVV----LNDRVKQVSGT 271
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
L++ + + C N+ L V ++ + + G
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLT--VTAPLSAKID-PPTQTVDFGRPAVFT 328
Query: 258 CKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
C+ NP W + + + S + L + ++ +
Sbjct: 329 CQYTGNPIK-TVSWMKDGKAIG--HSESVLRIESVKK 362
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-33
Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 30/228 (13%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
P + G V L C +L+W D + R S + + +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 88 --------GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV- 138
L + + D+ Y C V G G A L V P+ +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAG---TAEATARLNVFAKPEATEVSP 123
Query: 139 -QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV-------DGR 190
+G + + C S NG P +ITW + V + E +
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNT----ADRTYKVARLKLLVKY 234
++ STL L +K+ + +F C A + L + Y
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 5e-08
Identities = 37/226 (16%), Positives = 57/226 (25%), Gaps = 46/226 (20%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV----------------------- 586
P V+V RG V L C G + W D
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 587 ------VGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
+ + L L D+ Y C A A + + +P
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDE--RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 639 FGI-----PGDTARVECSAFSIPPPEKVTW-------SYRGEEIGVGSSDDYSVLEDPLK 686
G C++ + P K+TW E G +V E
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGL 184
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLL 732
+ STL +R + D ++C+ + P L
Sbjct: 185 LSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-30
Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 32/271 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ + P VG C+V + W + LS + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-----GEKLSPNQQRISVVWND 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQGDTL 143
+ +L IY +DD Y+C V+ G + + + P +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAE-DGT--QSEATVNVKIFQKLMFKNAPTPQE---- 111
Query: 144 YTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
E + + C P I W + +VR ++ + L +
Sbjct: 112 -FKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---------NYLQIR 160
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKA 260
K+ T+ C+ + A ++++V P VQ N G V L C A
Sbjct: 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA 220
Query: 261 EANPSHMKYRWYINDQPVPAAASATELYLTN 291
+ P W + +P+ E ++ +
Sbjct: 221 DGFPE-PTMSWTKDGEPIENEEEDDEKHIFS 250
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 47/276 (17%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS----------------------- 525
G++ C + ++W E + S
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 526 ----VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
V + G ++ + + F+ P + G ++CDV + P I W H
Sbjct: 77 YKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 581 EDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRP 630
+ D ++ +L + D G Y C+ ++ E+ + V + P
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARGEINFKDIQVIVNVPP 195
Query: 631 TIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
T+ + ++ G + + C A P P ++W+ GE I DD +
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKH----IFS 250
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
S L IR + Y C N G I L
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 51/292 (17%), Positives = 97/292 (33%), Gaps = 58/292 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 449 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 497 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-----------------------NDVGKS 533
S PP + W ++G ++ + + V
Sbjct: 123 DVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 534 EDSE--TLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------ 583
+ + + V P +AR + + G V L+CD DG P P ++W +
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241
Query: 584 ---DKVVGNSPNLTL----LMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLK 627
+K + + + L + +D Y C A + G + V+ K
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKND--EAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-27
Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 31/256 (12%)
Query: 306 QVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQP-----------VPAAASATE 353
QV ++ S + G C+ + W+ + V ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 354 LYLTNITRHQHDS-IVKCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLL 411
L + N D+ I KC V + G ++ + + F+ P + G ++
Sbjct: 64 LTIYNAN--IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLL---------MTSDDLAGRYYCKASVMGFP 462
CDV + P I W H+ D ++ +L + D G Y C+ ++
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARG 180
Query: 463 EVG-AEATVYLKGRPTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
E+ + V + PT+ + ++ G + + C A P P ++W+ GE I
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIEN 239
Query: 519 GSSDDYSVHNDVGKSE 534
DD SE
Sbjct: 240 EEEDDEKHIFSDDSSE 255
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 5e-21
Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F P Q G + C V + W + ++ R+ ++ +
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKD----VRFIVLSN 154
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ L+I + D+ Y+C+ I + + V VPP
Sbjct: 155 N-----YLQIRGIKKTDEGTYRCEGRILA--RGEINFKDIQVIVNVPPTVQARQSIVNAT 207
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ + L C A+G P ++W + + E+ + S L +
Sbjct: 208 ANLGQSVTLVC-DADGFPEPTMSWTKDGEPIENEEEDDEKHIF----SDDSSELTIRNVD 262
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++ + C A+N A LK+ K
Sbjct: 263 KNDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 47/307 (15%), Positives = 87/307 (28%), Gaps = 62/307 (20%)
Query: 125 TLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVT 182
L V + P I G++ C A +I+W +G + R++
Sbjct: 2 VLQVDIVPSQGEISVGES--------KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS 53
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV 242
+ D STL + + C + A + + + + +
Sbjct: 54 VVWNDDDS-----STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAP 107
Query: 243 IGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITR 294
+ + EG D + C ++ W + V L + I +
Sbjct: 108 --TPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164
Query: 295 H------------QHDSIVKCEVQVSV-----------IGSNRLVEGTDVRLYCKAEANP 331
I ++QV V I + G V L C A+ P
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224
Query: 332 SHMKYRWYINDQPVPAAASATE----------LYLTNITRHQHDSIVKCEVHNDVGKSED 381
W + +P+ E L + N+ + ++ C N G+ +
Sbjct: 225 E-PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEAEYVCIAENKAGEQDA 282
Query: 382 SETLDVT 388
S L V
Sbjct: 283 SIHLKVF 289
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 50/287 (17%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
+ G++ C+A P ++ +GE+I
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 517 --GVGSSDD--YS--VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD 569
D Y + G+++++ L++ FR + +G ++C V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620
+PAP ++W++ + + ++ N+ NL +L + G Y C+ V E+
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 621 EATVYLKGRPTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676
+ + P IS G+ C A P P ++W G+ I ++
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLI--EENE 239
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
Y + + L +R + G Y C +N G D + L
Sbjct: 240 KYILKGS------NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 53/291 (18%), Positives = 99/291 (34%), Gaps = 50/291 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLT 440
+ V++ G C G P I W + +K++ G LT
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAF 499
+ + + AG Y C+A+ A + + + T Q G+ A V C
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 500 SIPPPEKVTWSYRGEEIGVGSSDDYSVHND------------------------VGKSED 535
S P P V+W Y EE+ S + +++ + G+ +
Sbjct: 124 SSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 536 SETLDVTYGP---RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------K 585
+ + + P + ++ +RG + C G+P P I+W
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
+ G++ LT+ + G Y C+A+ G E +A + + + H
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQHHHHHH 291
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 44/282 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + VG C G + W + R +
Sbjct: 6 QVTISLSKVELSVGESKFFTCTA---IGEPESIDWYNPQ-----GEKIISTQRVVV--QK 55
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPRIVQGDT 142
E L IY ++D Y+CQ + G+ + L + + +
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDA-KGQ--TQEATVVLEIYQKLTFREVVSPQE--- 109
Query: 143 LYTTEDREIELECISANGKPPAEITWI--DGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ + E+ C + P ++W+ + T +S+ R A+ + L +
Sbjct: 110 --FKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---------NNLQI 157
Query: 201 TPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCK 259
+ + C+ + A + ++V P + + N G ++ C+
Sbjct: 158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 217
Query: 260 AEANPSHMKYRWYINDQPVPA------AASATELYLTNITRH 295
A +P W+ N + + S TEL + NI
Sbjct: 218 ASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 258
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 50/279 (17%), Positives = 93/279 (33%), Gaps = 52/279 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYIND-QPVPAAA--------SATELYLTNITRHQHDS 366
G C A P WY + + + + L + N D+
Sbjct: 17 SVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN--IEDA 72
Query: 367 -IVKCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
I +C+ + G+++++ L++ FR + +G ++C V +PAP ++W
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 132
Query: 425 IHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475
++ + + ++ N+ NL +L + G Y C+ V E+ + +
Sbjct: 133 LYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 191
Query: 476 PTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI--------------- 516
P IS G+ C A P P ++W G+ I
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEENEKYILKGSNTEL 250
Query: 517 ---GVGSSDD--YS--VHNDVGKSEDSETLDVTYGPRFR 548
+ +SD Y N G+ E L V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 27/209 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q G + CRV + + W + + + +R+AM+
Sbjct: 100 TFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISD----NRFAML-- 150
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ +L+I + D+ Y+C+ GE I R + V VPP +
Sbjct: 151 ---ANNNLQILNINKSDEGIYRCEGRVEARGE--IDFRDIIVIVNVPPAISMPQKSFNAT 205
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E+ C A+G P I+W + N + + S + L +
Sbjct: 206 AERGEEMTFSC-RASGSPEPAISWFRNGKLIEENEKYILKGSN--------TELTVRNII 256
Query: 205 EHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ C+A N A K A L++ V+
Sbjct: 257 NSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 8e-20
Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 58/283 (20%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYIND-QPVPAAA--------SATELYLTNITRHQHDS 299
G C A P WY + + + + L + N D+
Sbjct: 17 SVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN--IEDA 72
Query: 300 -------------IVKCEVQVSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYR 337
+ V + + + +G D + C+ ++P+
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVS 131
Query: 338 WYINDQPVPAAASA-------TELYLTNITRHQHDSIVKCEVHNDVGKSEDS--ETLDVT 388
W +++ V + L + NI + + I +CE + D + V
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEIDFRDIIVIVN 190
Query: 389 YGPRFRA--RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------KVVGNSPNL 439
P + ++ +RG + C G+P P I+W + G++ L
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
T+ + G Y C+A+ G E +A + + + H
Sbjct: 251 TVRNIINSDGGPYVCRATNKAG--EDEKQAFLQVFVQHHHHHH 291
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + TA G +T CR +G + W ++ + + ++Y + GS+
Sbjct: 197 MPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEEN------EKYILKGSN 247
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L + ++ D Y C+ T GE + A L V V
Sbjct: 248 ----TELTVRNIINSDGGPYVCRA-TNKAGE---DEKQAFLQVFVQH 286
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 7e-30
Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 34/279 (12%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH------ 527
P+I +++ + GDT + C P+ V W+++ + +
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYFNEMVENKKNEWIQEKAEA 66
Query: 528 NDVGK--------SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
G S + V + + + + C + + + I
Sbjct: 67 TRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLI 126
Query: 580 HEDSDKVVGN-----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVY----LK 627
D + + +P + + + C A G + T+ +K
Sbjct: 127 ECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186
Query: 628 GRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-VGSSDDYSVLEDPL 685
P + + + GDT V C+ + W + + S
Sbjct: 187 AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF 246
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ TL I +R D GV+ C +N +GS +V LK
Sbjct: 247 NYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 5e-21
Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 22/237 (9%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
G + L C W + ++ C N +
Sbjct: 26 AGDTLSLTCIDPDFVR-----WTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN- 435
S + V + + + + C + + + I D + +
Sbjct: 81 TSSI---YVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137
Query: 436 ----SPNLTLLMTS---DDLAGRYYCKASVMGFPEVGAEATVY----LKGRPTI-ISHRT 483
+P + + + C A G + T+ +K P + + +
Sbjct: 138 TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS 197
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-VGSSDDYSVHNDVGKSEDSETL 539
GDT V C+ + W + + S H E ETL
Sbjct: 198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL 254
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 7e-16
Identities = 34/271 (12%), Positives = 70/271 (25%), Gaps = 41/271 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G ++L C ++WT + N
Sbjct: 18 AQSELIVEAGDTLSLTCID---PDFVRWTFKTYFNEMVENKKN---------------EW 59
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
Y C S G+ + + V P + G L+ ED +
Sbjct: 60 IQEKAEATRTGTYTCSNSNGL-------TSSIYVFVRDPAKL--FLVGLPLFGKEDSDAL 110
Query: 153 LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
+ C ++ + I ++ +++ + + + K+ +H
Sbjct: 111 VRC-PLTDPQVSQYSLIECDGKSLPTDLTF----VPNPKAGI----TIKNVKRAYHRLCV 161
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG---SNRLVEGTDVRLYCKAEANPSHMK 268
C AQ + L V+ A K V S+ L +G + C + + +
Sbjct: 162 RCAAQR-DGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 269 YRWYINDQPVPAAASATELYLTNITRHQHDS 299
W + A +
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQ 251
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 3e-14
Identities = 34/287 (11%), Positives = 71/287 (24%), Gaps = 58/287 (20%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
P + V+ G ++L C + W + + + + +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATR 68
Query: 449 AGRYYCKASVMGFPEVGAEATVYLKGRPTI-ISHRTQFGIPGDTARVECSAFSIPPPEKV 507
G Y C S + + V+++ + + FG A V C + P +
Sbjct: 69 TGTYTCSNS----NGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL-TDPQVSQY 123
Query: 508 TW-SYRGEEIGVGSSDDYSVHNDV---------------------GKSEDSETLDVTYG- 544
+ G+ + + + + G S+ +
Sbjct: 124 SLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE 183
Query: 545 -----PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMT 598
P S + +G ++C + W+ +
Sbjct: 184 AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR 243
Query: 599 SDDL----------------AGRYYCKAS-VMGFPEVGAEATVYLKG 628
D +G + C A+ G V V KG
Sbjct: 244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 3e-13
Identities = 25/210 (11%), Positives = 49/210 (23%), Gaps = 18/210 (8%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDF-ALGPHRNLSGFDRYAMIGSDE 86
K + S + C + D + D +L + + +
Sbjct: 93 KLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN- 151
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIVQGDTLYT 145
+C + S TL V P + +T +
Sbjct: 152 ---------VKRAYHRLCVRCAAQRD---GTWLHSDKFTLKVREAIKAIPVVSVPETSHL 199
Query: 146 -TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C + W+ + TL ++
Sbjct: 200 LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA 259
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + F C A NT LK++ K
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 7e-10
Identities = 38/301 (12%), Positives = 75/301 (24%), Gaps = 69/301 (22%)
Query: 132 PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P PP I L + L C + W T + +
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTC-IDPD----FVRW-------------TFKTYFNEM 51
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
K+ + + T+TC N + + + V+ K+ + + E
Sbjct: 52 VENKKNEWIQEKAEATRTGTYTCSNSNGLT-----SSIYVFVRDPAKLFLVGLPLFG-KE 105
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDSIVKCE- 304
+D + C + + +P + + + N+ R H V+C
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAA 165
Query: 305 -----------VQVSVIG-------------SNRLVEGTDVRLYCKAEANPSHMKYRWYI 340
+ V S+ L +G + C + + + W
Sbjct: 166 QRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 341 NDQPVPAAASATELYLTNITRHQHDSIV--------------KCEVHNDVGKSEDSETLD 386
+ A + C +N G + + TL
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Query: 387 V 387
V
Sbjct: 286 V 286
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-29
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676
G+ T+ + G P I S +TQ + G+ +++C S PPP+++ WS++ + G+S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 677 DYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLKPQKS 728
Y+V +EG+ STL I F +YNC+ N +GSD+ I LK Q S
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 8e-14
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 463 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522
G+ T+ + G P I S +TQ + G+ +++C S PPP+++ WS++ + G+S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 523 DYSVHNDVGKSEDSETL 539
Y+V + TL
Sbjct: 62 RYTVETISTEEGVISTL 78
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-10
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR 180
TLTV PP I T + + +++C + PP I W + S
Sbjct: 4 GSSGTLTVNGPP---IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 181 VTEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLK 229
V STL ++ + T + C A N+ ++ RLK
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGN 435
G S S TL V P + + G + C + P P+ I W +++ G
Sbjct: 1 GSSGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 436 SPNLTLLMTSD----------------DLAGRYYCKAS 457
S T+ S D Y C A
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGN 589
G S S TL V P + + G + C + P P+ I W +++ G
Sbjct: 1 GSSGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 590 SPNLTLLMTSD----------------DLAGRYYCKAS 611
S T+ S D Y C A
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 33 EPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
Q Q A+ G + + C + + W+ + L SG I ++E
Sbjct: 19 STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES--GTSGRYTVETISTEEGVIS 76
Query: 91 SLEIYPVMLDDDAR-YQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+L I ++ D Y C G + L
Sbjct: 77 TLTISNIVRADFQTIYNCTAWNS-FGS---DTEIIRLKEQGSEMSG 118
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 70/306 (22%), Positives = 105/306 (34%), Gaps = 63/306 (20%)
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGN 435
ET PRF P G + +C G+P P +TW + + + +
Sbjct: 1 ET--GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 436 SPNLTLLM-----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RT 483
+L T D Y C A +G V A+ TV + G P I +
Sbjct: 59 ESAGAVLRIQPLRTPRD-ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 484 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-------------------- 523
+ TA + C+A P PE +TW + +S+
Sbjct: 118 KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 524 --YS--VHNDVGKSEDSE---TLDVTYG-PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
Y N G S + V PRF P S ++ G VN+ C G+P P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 576 ITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLKG 628
+ W + + D VG + L L D + Y C A S +G + A A + +K
Sbjct: 237 VKWMQGAEDLTPEDDMPVGRN-VLELTDVKD--SANYTCVAMSSLG--VIEAVAQITVKS 291
Query: 629 RPTIIS 634
P +
Sbjct: 292 LPKAGT 297
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 49/287 (17%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------LYLTNITRHQH 364
V G C+A +P + W + V + T L + + +
Sbjct: 17 IGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRD 75
Query: 365 DSIVKCEVHNDVGKSEDSETLDVTYG-------PRFRARPYSVQVDRGAGVNLLCDVDGN 417
+++ +C N VG+ L V P P V+R +LC GN
Sbjct: 76 ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGN 135
Query: 418 PAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKASVMGFPEVGAEA 468
P PEITW + S + S L G+Y C A+ + A
Sbjct: 136 PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPA 195
Query: 469 TVYLKGR---PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI-------- 516
+Y++ + P + +PG + C A P P V W E++
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY-VKWMQGAEDLTPEDDMPV 254
Query: 517 ------GVGSSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPYS 553
D +Y+ + +G E + V P+ + +
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHH 301
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 63/263 (23%), Positives = 99/263 (37%), Gaps = 35/263 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F EP+DQ V G + C+ TG + W K + R+ I
Sbjct: 8 RFIKEPKDQIGVSGGVASFVCQA---TGDPKPRVTWNKKGKKVNS-------QRFETIEF 57
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQ 139
DE L I P+ D Y+C +GE + A LTVL P I
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNS-VGE---ITVHAKLTVLREDQLPSGFPNIDM 113
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-T 197
G L R + C +A+G P EITW V + ++ +GR ++S
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPV-------DPSASNGRIKQLRSGA 165
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKV-ARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
L + +E + C A N+A Y A L + V+ + S+ ++ G +V +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225
Query: 257 YCKAEANPSHMKYRWYINDQPVP 279
C A +P +W + +
Sbjct: 226 TCVAVGSPM-PYVKWMQGAEDLT 247
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 6e-23
Identities = 56/304 (18%), Positives = 96/304 (31%), Gaps = 64/304 (21%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291
+ P+ + V G C+A +P + W + V + T + +
Sbjct: 3 GEEPPRF-IKEPKDQIGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFDES 60
Query: 292 I--------TRHQHDS------------IVKCEVQVSVIGSNRL---------------- 315
R D + +++V+ ++L
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT--------ELYLTNITRHQHDSI 367
+ C A NP + W+ + PV +AS L + +
Sbjct: 121 ERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE-TDQGK 178
Query: 368 VKCEVHNDVGKSEDSE---TLDVTYG-PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 423
+C N G S + V PRF P S ++ G VN+ C G+P P +
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Query: 424 W------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEATVYLKGRP 476
W + + D VG + L L D + Y C A S +G + A A + +K P
Sbjct: 239 WMQGAEDLTPEDDMPVGRN-VLELTDVKD--SANYTCVAMSSLG--VIEAVAQITVKSLP 293
Query: 477 TIIS 480
+
Sbjct: 294 KAGT 297
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 4e-22
Identities = 49/217 (22%), Positives = 73/217 (33%), Gaps = 34/217 (15%)
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGN 589
ET PRF P G + +C G+P P +TW + + + +
Sbjct: 1 ET--GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 590 SPNLTLLM-----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RT 637
+L T D Y C A +G V A+ TV + G P I +
Sbjct: 59 ESAGAVLRIQPLRTPRD-ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIR 696
+ TA + C+A P PE +TW + +S+ L L I
Sbjct: 118 KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRS-------GALQIE 169
Query: 697 ESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSFP 730
S G Y C +N G S + ++ Q P
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP 206
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-21
Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 34/214 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
M PQ + T+ C +G + W KD + P + R + S
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAA---SGNPDPEITWFKDFLPVDPSAS---NGRIKQLRS 163
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+L+I D +Y+C + G S A L V V PR +
Sbjct: 164 G-----ALQIESSEETDQGKYECVATN-SAGV--RYSSPANLYVRVQNVAPRFSILPMSH 215
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ + C+ A G P + W+ G + + VL
Sbjct: 216 EIMPGGNVNITCV-AVGSPMPYVKWMQGAEDLTPEDDMPV------------GRNVLELT 262
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
+ +TC A ++ VA+ + VK PK
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAVAQ--ITVKSLPK 294
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+F++ P + G V + C + ++W + L P + +G
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-------EDDMPVGR--- 256
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + D A Y C + LG A +TV P
Sbjct: 257 ----NVLELTDVKDSANYTCVAMS-SLGV---IEAVAQITVKSLPKAG 296
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 22/194 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 603 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 650
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 651 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710
S PP + W ++G ++ + + VL + + L IR + G Y C
Sbjct: 123 DVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN-------NYLQIRGIKKTDEGTYRCEG 174
Query: 711 SNPYGSDSVEIMLK 724
+ ++
Sbjct: 175 RILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 6e-23
Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 26/209 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ + P VG C+V K + W + LS + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-----GEKLSPNQQRISVVWND 58
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYT 145
+ +L IY +DD Y+C V+ G + +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAE-DGT--QSEATVNVKIFQ---KLMFKNAPTPQEF 112
Query: 146 TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPK 203
E + + C P I W G ++ D R + + L +
Sbjct: 113 KEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKK---------DVRFIVLSNNYLQIRGI 162
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLV 232
K+ T+ C+ + A ++++V
Sbjct: 163 KKTDEGTYRCEGRILARGEINFKDIQVIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-20
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
+ P ++ G LC V G+ +I+W + +K+ N ++++ DD
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 449 -----------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496
AG Y C + + A V + + + Q G+ A + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 497 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
S PP + W ++G ++ + + V ++
Sbjct: 123 DVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN 154
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 3e-17
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 31/180 (17%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYIND-----------QPVPAAASATELYLTNITRH 362
+ G C+ + W+ + V ++ L + N
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 363 QHDS-IVKCEVHNDVG-KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
D+ I KC V + G +SE + + + F+ P + G ++CDV + P
Sbjct: 73 --DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 421 EITWIHEDSDKVVGNSPNLTLL----------MTSDDLAGRYYCKASVMGFPEVGAEATV 470
I W H+ D ++ +L +D G Y C+ + E
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD--EGTYRCEGRI----LARGEINF 184
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-14
Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 44/174 (25%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV---------------------- 526
G++ C + ++W E + SV
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 527 -----HNDVG-KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
+ G +SE + + + F+ P + G ++CDV + P I W H
Sbjct: 77 YKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 581 EDSDKVVGNSPNLTLL----------MTSDDLAGRYYCKASVMGFPEVGAEATV 624
+ D ++ +L +D G Y C+ + E
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTD--EGTYRCEGRI----LARGEINF 184
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 20/181 (11%), Positives = 44/181 (24%), Gaps = 42/181 (23%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYIND-----------QPVPAAASATELYLTNITRH 295
+ G C+ + W+ + V ++ L + N
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 296 -----------QHDSIVKCEVQVSVIG--------SNRLV-EGTDVRLYCKAEANPSHMK 335
+ + + V V + + + EG D + C ++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PT 131
Query: 336 YRWYINDQPVPAAASA-------TELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLDV 387
W + V L + I + D +CE + + + V
Sbjct: 132 IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK--TDEGTYRCEGRILARGEINFKDIQV 189
Query: 388 T 388
Sbjct: 190 I 190
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 44/284 (15%), Positives = 79/284 (27%), Gaps = 43/284 (15%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSV------ 526
P I + + PG T + C V W + S S+
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVG-----NGSVEWDGPPSPHWTLYSDGSSSILSTNNA 58
Query: 527 ------------HNDVGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDV-DGNP 572
D + L V R + V V L C + D
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 573 APEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625
++ + + T+ + Y C A + G + +
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK 178
Query: 626 ----LKGRPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 680
+ G P + + G+ A++ CSA S+ V + ++ + D+
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH- 237
Query: 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ TL + + H G Y+C SN G S + +
Sbjct: 238 ---NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 3e-19
Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 37/258 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G+ VTL C G ++W PH L + L
Sbjct: 10 SVPELVVKPGATVTLRCVG---NGSVEWDGPP---SPHWTLY----------SDGSSSIL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ Y+C +P S L V P P ++ + + ED++
Sbjct: 54 STNNATFQNTGTYRCTEPG----DPLGGSAAIHLYVKDPARPWNVLAQE-VVVFEDQDAL 108
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV--KSTLVLTPKKEHHNTT 210
L C+ + A ++ + G + + + K +
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLM----------RHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 211 FTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI---GSNRLVEGTDVRLYCKAEANPSHM 267
+ C A R ++L V+ ++ + G ++ C A + +
Sbjct: 159 YQCSALM-GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF 217
Query: 268 KYRWYINDQPVPAAASAT 285
N+ + +
Sbjct: 218 DVFLQHNNTKLAIPQQSD 235
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 7e-18
Identities = 44/293 (15%), Positives = 71/293 (24%), Gaps = 55/293 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----GNSPNLTLLMTSD 446
P + V GA V L C +G + W S G+S L+ +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATF 60
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
G Y C V RP + + A + C
Sbjct: 61 QNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 506 KVTWSYRGEEIGVGSSDDYSVHND----------------------VGKSEDSETLDVT- 542
V+ + +YS G+ S ++ +
Sbjct: 121 GVSLVRVRGRP-LMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179
Query: 543 -----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------- 587
P P + RG ++C ++ ++ K+
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 588 GNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 636
LTL + AG Y C AS V G + + H
Sbjct: 240 RYQKVLTLNLDQVDFQH-AGNYSCVASNVQG--KHSTSMFFRVVESAGNSHHH 289
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 7e-17
Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 23/213 (10%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + Q+ LPC + D + + R L Y+
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR-----GRPLMRHTNYSF---SPW 143
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIVQGDTLYT- 145
I+ YQC G + S L V V P PP +
Sbjct: 144 H--GFTIHRAKFIQSQDYQCSALMGGRK---VMSISIRLKVQKVIPGPPALTLVPAELVR 198
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
++ C SA+ ++ T + + +++ R TL L
Sbjct: 199 IRGEAAQIVC-SASSVDVNFDVFLQHNNT---KLAIPQQSDFHNNRYQKVLTLNLDQVDF 254
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
H ++C A N + + V +
Sbjct: 255 QHAGNYSCVASNVQGKHSTSMFFR--VVESAGN 285
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 44/370 (11%), Positives = 75/370 (20%), Gaps = 105/370 (28%)
Query: 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P I L + L C NG + W G + + + S
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRC-VGNG----SVEW---DGPPSPHWTLYSDGSS----- 50
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT 252
S L + T+ C L VK + + + E
Sbjct: 51 ---SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY--VKDPARPWNVLAQEVVVFEDQ 105
Query: 253 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGS 312
D L C ++ +
Sbjct: 106 DALLPCLLTDPV------------LEA-----------GVSLVRVRG------------- 129
Query: 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 372
H Y + + +C
Sbjct: 130 ---------------RPLMRHTNYSFSPWH----------GFTIHRAKFI-QSQDYQCSA 163
Query: 373 HNDVGKSEDSETLDVT------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
G+ S ++ + P P + RG ++C ++
Sbjct: 164 LMG-GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQ 222
Query: 427 EDSDKVV----------GNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYL 472
++ K+ LTL + AG Y C AS V G + +
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQH-AGNYSCVASNVQG--KHSTSMFFRV 279
Query: 473 KGRPTIISHR 482
H
Sbjct: 280 VESAGNSHHH 289
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-26
Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 23/193 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 595
FR + +G ++C V +PAP ++W++ + + ++ N+ NL +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQI 61
Query: 596 LMTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRPTIISHRT---QFGIPGDTARVECS 651
L + G Y C+ V E+ + V + P I + G+ C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711
A P P ++W G+ I ++ Y + + L +R + G Y C +
Sbjct: 122 ASGSPEPA-ISWFRNGKLI--EENEKYILKGS------NTELTVRNIINSDGGPYVCRAT 172
Query: 712 NPYGSDSVEIMLK 724
N G D + L+
Sbjct: 173 NKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-23
Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
F Q G + CRV + + W + + + +R+AM+
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISD----NRFAML--- 54
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ +L+I + D+ Y+C+ GE I R + V VPP +
Sbjct: 55 --ANNNLQILNINKSDEGIYRCEGRVEARGE--IDFRDIIVIVNVPPAISMPQKSFNATA 110
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E+ C A+G P I+W + N + + S + L +
Sbjct: 111 ERGEEMTFSC-RASGSPEPAISWFRNGKLIEENEKYILKGS--------NTELTVRNIIN 161
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ C+A N A K A L++ V+
Sbjct: 162 SDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 3e-18
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------KVVGNSPNLTL 441
FR + +G ++C V +PAP ++W++ + + ++ N+ NL +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQI 61
Query: 442 LMTSDDLAGRYYCKASVMGFPEVG-AEATVYLKGRPTIISHRT---QFGIPGDTARVECS 497
L + G Y C+ V E+ + V + P I + G+ C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531
A P P ++W G+ I ++ Y +
Sbjct: 122 ASGSPEPA-ISWFRNGKLI--EENEKYILKGSNT 152
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-16
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 24/163 (14%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITRHQHDSI 367
+G D + C+ ++P+ W +++ V + L + NI + + I
Sbjct: 14 FKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGI 71
Query: 368 VKCEVHNDVGKSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 423
+CE + D + V + ++ +RG + C G+P P I+
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 424 WIHEDSDKVVGNSPNLTLLMTSDDL---------AGRYYCKAS 457
W K++ + L ++ +L G Y C+A+
Sbjct: 132 WFRNG--KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 5e-12
Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 28/180 (15%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVT 182
+ LT P QG+ E+ C + P ++W+
Sbjct: 1 SMLTFREVVSPQEFKQGEDA--------EVVC-RVSSSPAPAVSWLYHN---------EE 42
Query: 183 EEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
D R + + L + + + C+ + A + ++V P + +
Sbjct: 43 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMP 102
Query: 242 VIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITR 294
N G ++ C+A +P W+ N + + S TEL + NI
Sbjct: 103 QKSFNATAERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIIN 161
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ + TA G +T CR +G + W ++ + + ++Y +
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNG------KLIEENEKYIL--- 147
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+ + L + ++ D Y C+ T GE + A L V V
Sbjct: 148 -KGSNTELTVRNIINSDGGPYVCRA-TNKAGE---DEKQAFLQVFV 188
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 41/177 (23%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-------TELYLTNITRHQHDSI 300
+G D + C+ ++P+ W +++ V + L + NI + + I
Sbjct: 14 FKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGI 71
Query: 301 VKCEVQVSVIGSN------------------------RLVEGTDVRLYCKAEANPSHMKY 336
+CE +V G G ++ C+A +P
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAI 130
Query: 337 RWYINDQPVPA------AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
W+ N + + S TEL + NI C N G+ E L V
Sbjct: 131 SWFRNGKLIEENEKYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQV 186
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-26
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 25/195 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------KVVGNSPNL 593
P F SV V G+ + G P PE++W + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 648
T+ + +GRY KA+ G + + A + +K P + ++ G R+
Sbjct: 66 TIPAVTKANSGRYSLKATNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ IP P V + G EI SS D+ + ++ G +L+I E+ + G Y+
Sbjct: 124 QVRVTGIPTPV-VKFYRDGAEIQ--SSLDFQISQE----GDLYSLLIAEAYPEDSGTYSV 176
Query: 709 SVSNPYGSDSVEIML 723
+ +N G + L
Sbjct: 177 NATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 2e-23
Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 25/205 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q + GS T + +G + W +D + +S + S
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHI---SGFPVPEVSWFRDG------QVISTSTLPGVQIS 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
+G L I V + RY + + G G+ + A L V PP VQ ++
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGS-GQ---ATSTAELLVKAETAPPNFVQRLQSM 113
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ ++ L+ G P + + + S++ D +L++
Sbjct: 114 TVRQGSQVRLQV-RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL------YSLLIAEA 166
Query: 204 KEHHNTTFTCQAQNTADRTYKVARL 228
+ T++ A N+ R A L
Sbjct: 167 YPEDSGTYSVNATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-17
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------KVVGNSPNL 439
P F SV V G+ + G P PE++W + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 494
T+ + +GRY KA+ G + + A + +K P + ++ G R+
Sbjct: 66 TIPAVTKANSGRYSLKATNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
+ IP P V + G EI SS D+ + +
Sbjct: 124 QVRVTGIPTPV-VKFYRDGAEI--QSSLDFQISQE 155
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 6e-17
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 26/165 (15%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 365
+EG+ P + W+ + Q + + +L + +T+ +
Sbjct: 18 LEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA--N 74
Query: 366 S-IVKCEVHNDVGKSEDSETLDVTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
S + N G++ + L V P F R S+ V +G+ V L V G P P
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134
Query: 422 ITWIHED-----SDKVV----GNSPNLTLLMTSDDLAGRYYCKAS 457
+ + + S G+ +L + + +G Y A+
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P Q ++ E E +G P E++W DG S + + + DGR
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR- 62
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG 251
+ L + + ++ ++ +A N + + A L + + AP V + S + +G
Sbjct: 63 ----AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 252 TDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ VRL + P ++Y + +
Sbjct: 119 SQVRLQVRVTGIP-TPVVKFYRDGAEIQ 145
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F Q T GS+V L RV TG V+++ +D + + + S
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRV---TGIPTPVVKFYRDGAEIQSS------LDFQI--S 153
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E YSL I +D Y + +G + A L V
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATN-SVGR---ATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
PT ++ + G TA E P PE V+W G+ I + +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISF----SD 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
++ L I + G Y+ +N G + L
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/181 (11%), Positives = 48/181 (26%), Gaps = 47/181 (25%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 298
+EG+ P + W+ + Q + + +L + +T+ +
Sbjct: 18 LEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA--N 74
Query: 299 S------------IVKCEVQVSVIGSN------------RLVEGTDVRLYCKAEANPSHM 334
S ++ V + +G+ VRL + P
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP-TP 133
Query: 335 KYRWYINDQPVP--------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386
++Y + + L + + N VG++ + L
Sbjct: 134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP-EDSGTYSVNATNSVGRATSTAELL 192
Query: 387 V 387
V
Sbjct: 193 V 193
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 45/288 (15%), Positives = 81/288 (28%), Gaps = 51/288 (17%)
Query: 129 LVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
++P PP++V L D + + C P +E G N VT
Sbjct: 1 VLPATPPQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG---- 54
Query: 189 GRRTTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
+ + ++ E T TC + + + AP V ++
Sbjct: 55 --NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV---ILTKPE 109
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV 307
+ EGT+V + C+A +N P +L L T + C +
Sbjct: 110 VSEGTEVTVKCEAHPRAK-----VTLNGVPAQPLGPRAQLLL-KATPEDNGRSFSCSATL 163
Query: 308 SVIG--------------------------SNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341
V G + E + C+A NP + + +
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKD 222
Query: 342 DQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
+TR + C + G+ T++V
Sbjct: 223 GTFPLPIGE-----SVTVTRD-LEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 98.6 bits (245), Expect = 5e-23
Identities = 43/251 (17%), Positives = 77/251 (30%), Gaps = 46/251 (18%)
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI--NDQPVPA-------AASATELYLTNI 292
++ L T + C + + + ++ DQ + + SA
Sbjct: 9 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 68
Query: 293 TRHQHDSIVKCEVQVS--------------------VIGSNRLVEGTDVRLYCKAEANPS 332
+ C V + ++ + EGT+V + C+A
Sbjct: 69 EDEGTQRLT-CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK 127
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG----KSEDSETLDVT 388
+N P +L L T + C +V + L V
Sbjct: 128 -----VTLNGVPAQPLGPRAQLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Query: 389 YGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
YGPR R P + + +C GNP PE+ + + + + P + +
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTR 237
Query: 447 DLAGRYYCKAS 457
DL G Y C+A
Sbjct: 238 DLEGTYLCRAR 248
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 5e-21
Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 40/242 (16%)
Query: 402 VDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-------VGNSPNLTLLMT---SDDLAG 450
++ ++C +DG P E D+ +S + ++ D+
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 74
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPT-IISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509
R C + TV + P + G V+C A P KVT
Sbjct: 75 RLTCAVILGN-QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTL 130
Query: 510 SYRGEE---------IGVGSSDD---------YSVHNDVGKSEDSETLDVTYGPRFRAR- 550
+ + + D+ V + + L V YGPR R
Sbjct: 131 NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 190
Query: 551 -PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCK 609
P + + +C GNP PE+ + + + + P + + DL G Y C+
Sbjct: 191 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCR 246
Query: 610 AS 611
A
Sbjct: 247 AR 248
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 5e-20
Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 31/261 (11%)
Query: 309 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI--NDQPVPA-------AASATELYLTNI 359
++ L T + C + + + ++ DQ + + SA
Sbjct: 9 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 68
Query: 360 TRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
+ C V E +T+ + P +V G V + C+ +P
Sbjct: 69 EDEGTQRLT-CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE--AHPR 125
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK--GRP 476
++T + + +G L L T +D + C A+ + + T L+ P
Sbjct: 126 AKVTL-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184
Query: 477 TIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-------VGSSD--DY 524
+ C A+ P PE + G V Y
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPLPIGESVTVTRDLEGTY 243
Query: 525 S--VHNDVGKSEDSETLDVTY 543
+ G+ T++V
Sbjct: 244 LCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 8e-20
Identities = 42/285 (14%), Positives = 79/285 (27%), Gaps = 49/285 (17%)
Query: 37 QTAVVGSRVTLPCRVIDK----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ V ++ T+ C + + D L P D +
Sbjct: 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN---------DSFSAKAS 63
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ R C V G + T+T+ P P V +E E+
Sbjct: 64 VSVTAEDEGTQRLTCAVILG----NQSQETLQTVTIYSFPAP--NVILTKPEVSEGTEVT 117
Query: 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212
++C A+ + + + ++ L+L E + +F+
Sbjct: 118 VKC-EAHPRAKVTLNGVPAQPL------------------GPRAQLLLKATPEDNGRSFS 158
Query: 213 CQAQNTA--DRTYKVARLKLLVKYAPKVQVSVIGSN-RLVEGTDVRLYCKAEANPSHMKY 269
C A +K +L V Y P++ N E + C+A NP +
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-EL 217
Query: 270 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR 314
+ + +TR + C + S G
Sbjct: 218 KCLKDGTFPLPIGE-----SVTVTRD-LEGTYLCRAR-STQGEVT 255
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 3e-18
Identities = 40/279 (14%), Positives = 76/279 (27%), Gaps = 56/279 (20%)
Query: 476 PTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGEEIG---------------- 517
P ++S R V CS + P +V + + +
Sbjct: 7 PQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV 64
Query: 518 ---VGSSDDY----SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 570
+V E +T+ + P +V G V + C+
Sbjct: 65 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA-- 122
Query: 571 NPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-- 627
+P ++T + + +G L L T +D + C A+ + + T L+
Sbjct: 123 HPRAKVTL-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Query: 628 GRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
P + C A+ P PE + G
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFP-------------- 226
Query: 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+ + +R G Y C + G + E+ +
Sbjct: 227 ----LPIGESVTVTRDLE-GTYLCRARSTQGEVTREVTV 260
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 8e-15
Identities = 28/204 (13%), Positives = 53/204 (25%), Gaps = 39/204 (19%)
Query: 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
Y + G+ VT+ C + T + P
Sbjct: 96 YSFPAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTLNGVPAQP--------------- 137
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
L + D+ + C + + G+ +++ L VL P
Sbjct: 138 -LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E+ + C A G P E+ + + G TV
Sbjct: 197 WPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPI----------GESVTV---------T 236
Query: 205 EHHNTTFTCQAQNTADRTYKVARL 228
T+ C+A++T + +
Sbjct: 237 RDLEGTYLCRARSTQGEVTREVTV 260
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 19/183 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 596
P +V +C V+ P PEI+W + N LT+L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI 655
D G Y C A+ V + + +K +P I I G A + C+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
P P V+W + + +VLE +L I + + G Y C N G
Sbjct: 128 PKPS-VSWIKGDSALR--ENSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 716 SDS 718
+
Sbjct: 178 TAY 180
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 7e-21
Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 34/210 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ A+V T C V + WT++ + RY++
Sbjct: 9 VITTPLETVDALVEEVATFMCAV---ESYPQPEISWTRNKILIKLFDT-----RYSI--- 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
E L I V DD Y C + G+ G L V + P+I + +
Sbjct: 58 -RENGQLLTILSVEDSDDGIYCCTANNGV-GG--AVESCGALQVKM---KPKITRPPINV 110
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
E + L C + G P ++WI G + N R+ S +L +
Sbjct: 111 KIIEGLKAVLPC-TTMGNPKPSVSWIKGDSALRENSRIAVLES---------GSLRIHNV 160
Query: 204 KEHHNTTFTCQAQNTADRTY-KVARLKLLV 232
++ + C A+N+ Y K+ +L++ V
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-18
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDS- 366
+ C E+ P + W N + + L + ++ D
Sbjct: 19 ALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRENGQLLTILSVEDS--DDG 75
Query: 367 IVKCEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 425
I C +N VG + E L V P+ P +V++ G L C GNP P ++WI
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWI 135
Query: 426 HEDSD-------KVVGNSPNLTLLMTSDDLAGRYYCKAS 457
DS V+ + +L + + AG+Y C A
Sbjct: 136 KGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAK 173
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 12/148 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 442
P +V +C V+ P PEI+W + N LT+L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI 501
D G Y C A+ V + + +K +P I I G A + C+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 502 PPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P P V+W + + +V
Sbjct: 128 PKPS-VSWIKGDSAL--RENSRIAVLES 152
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 16/151 (10%)
Query: 132 PDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDG 189
P P I +T+ + C + P EI+W + + + R + +G
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYS--IRENG 61
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
L + ++ + + C A N + L VK PK+ N +
Sbjct: 62 ------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGA-LQVKMKPKITRPP--INVKI 112
Query: 250 -EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
EG L C NP W D +
Sbjct: 113 IEGLKAVLPCTTMGNP-KPSVSWIKGDSALR 142
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K P + + G + LPC G + W K D AL + R A++
Sbjct: 102 KITRPPINVKIIEGLKAVLPCTT---MGNPKPSVSWIKGDSALREN------SRIAVL-- 150
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
SL I+ V +D +Y+C LG S+ L V V
Sbjct: 151 ---ESGSLRIHNVQKEDAGQYRCVAKN-SLGT--AYSKLVKLEVEVF 191
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 41/191 (21%)
Query: 235 APKVQ-----VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------A 282
A K+ + + + + C E+ P + W N +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRE 59
Query: 283 SATELYLTNITRH-----------QHDSIVKCEVQVSVIG--------SNRLV-EGTDVR 322
+ L + ++ V+ + V N + EG
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119
Query: 323 LYCKAEANPSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDSIVKCEVHNDVG 377
L C NP W D + + + L + N+ + + +C N +G
Sbjct: 120 LPCTTMGNP-KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQK-EDAGQYRCVAKNSLG 177
Query: 378 KSEDSE-TLDV 387
+ L+V
Sbjct: 178 TAYSKLVKLEV 188
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 39/286 (13%), Positives = 73/286 (25%), Gaps = 43/286 (15%)
Query: 473 KGRPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS------ 525
P I + + PG+T + C + V W +
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVS-----NGSVEWDGPISPYWTLDPESPGSTLTTR 56
Query: 526 -------------VHNDVGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDV-DG 570
D + L V + V V G L C + D
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 571 NPAPEITWIHEDSD-------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623
++ + E + + Y CK V G
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Query: 624 VYLKGR----PTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678
+ + P I ++ G+ A++ CSA + V ++ + + D+
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + G+Y+C SN G+ + + +
Sbjct: 237 QDNYY----KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 9e-20
Identities = 37/255 (14%), Positives = 68/255 (26%), Gaps = 35/255 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ G VTL C G ++W P+ L E +L
Sbjct: 10 SGPELVVEPGETVTLRCVS---NGSVEWDGPI---SPYWTL----------DPESPGSTL 53
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE 152
+ Y+C +P S L V P + + E +E
Sbjct: 54 TTRNATFKNTGTYRCTEL----EDPMAGSTTIHLYVKDPA-HSWNLLAQEVTVVEGQEAV 108
Query: 153 LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C+ + ++ + +G V+ R ++ K + T+
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYF----FSPWR-----GFIIRKAKVLDSNTY 159
Query: 212 TCQAQNTADRTYKVARLKLLVKYAPKV--QVSVIGSNRLV-EGTDVRLYCKAEANPSHMK 268
C+ R + L V Q+ + S + G ++ C A
Sbjct: 160 VCKTMV-NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN 218
Query: 269 YRWYINDQPVPAAAS 283
D + +
Sbjct: 219 VILKRGDTKLEIPLN 233
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 5e-19
Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 21/210 (10%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ + Q+ T V G LPC + D + ++ + + F
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS-------- 141
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV-LVPPDPPRIVQGDTLY 144
I + D Y C+ S L V V P+PP+I +
Sbjct: 142 --PWRGFIIRKAKVLDSNTYVCKTMVNGRES---TSTGIWLKVNRVHPEPPQIKLEPSKL 196
Query: 145 T-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
++ C + N + + G + + + + L L
Sbjct: 197 VRIRGEAAQIVCSATNAEVGFNVILKRGD----TKLEIPLNSDFQDNYYKKVRALSLNAV 252
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++C A N +++
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQVVES 282
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 2e-17
Identities = 39/265 (14%), Positives = 61/265 (23%), Gaps = 48/265 (18%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----LTLLMTSD 446
P + V+ G V L C +G + W S + + LT +
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATF 60
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
G Y C V + + + G A + C +
Sbjct: 61 KNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 506 KVTWSYRGEEI------------------GVGSSDD--YS---VHNDVGKSEDSETLDVT 542
V+ G D Y + N + L V
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Query: 543 YG----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------SDKV 586
P+ + P + RG ++C + D
Sbjct: 181 RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY 240
Query: 587 VGNSPNLTLLMTSDDLAGRYYCKAS 611
L+L AG Y C AS
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVAS 265
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 40/298 (13%), Positives = 65/298 (21%), Gaps = 62/298 (20%)
Query: 132 PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P I G L + L C +NG + W + ++ ++D
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRC-VSNG----SVEW---------DGPISPYWTLDPE 47
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
STL + T+ C L VK + +VE
Sbjct: 48 SPG--STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY--VKDPAHSWNLLAQEVTVVE 103
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCE 304
G + L C + + C+
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL-DSNTYVCK 162
Query: 305 VQVSVIGSNR-------------------------LVEGTDVRLYCKAEANPSHMKYRWY 339
V+ S + G ++ C A
Sbjct: 163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK 222
Query: 340 INDQPVPAAASATE----------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
D + ++ L L + Q I C NDVG + V
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKKVRALSLNAVDF-QDAGIYSCVASNDVGTRTATMNFQV 279
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 5e-12
Identities = 36/269 (13%), Positives = 59/269 (21%), Gaps = 53/269 (19%)
Query: 236 PKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAA---ASATELYLTN 291
P + G +V G V L C + + W P + + L N
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNGSVE-----WDGPISPYWTLDPESPGSTLTTRN 57
Query: 292 ITR----------HQHDSIVKCEVQVSVIGSNRL----------VEGTDVRLYCKAEANP 331
T + + + V VEG + L C
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 332 SHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSE-T 384
+ + C+ + +S +
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL-DSNTYVCKTMVNGRESTSTGIW 176
Query: 385 LDVTYG----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------ 428
L V P+ + P + RG ++C +
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 429 SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
D L+L AG Y C AS
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVAS 265
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 26/198 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP------------- 591
P + + V L+CD +G P PEITW
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 592 ---NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 646
+L + +GRY C+A+ +G + ++ P IS+ + G+
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
+ C S PP + W + ++ + G K L I + + FG Y
Sbjct: 119 NISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYST----GRKMILEIAPTSDNDFGRY 173
Query: 707 NCSVSNPYGSDSVEIMLK 724
NC+ +N G+ E +L
Sbjct: 174 NCTATNHIGTRFQEYILA 191
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-20
Identities = 42/222 (18%), Positives = 76/222 (34%), Gaps = 23/222 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKD-DFALGPHRNLSGFDRYAMIGSDEEGD 89
++ +++T +VTL C + + W + D + S R + G
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS- 63
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTED 148
SL I V L D RY C+ ++ I G + L + P+ + Y+ E
Sbjct: 64 -SLHIKDVKLSDSGRYDCEAASRI-GG---HQKSMYLDIE---YAPKFISNQTIYYSWEG 115
Query: 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
I + C PPA I W + + + GR+ L + P ++
Sbjct: 116 NPINISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK----MILEIAPTSDNDF 170
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAP----KVQVSVIGSN 246
+ C A N ++ L + P V++ +
Sbjct: 171 GRYNCTATNHIGTRFQEYILA--LADVPSSPYGVKIIELSQT 210
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP------------- 437
P + + V L+CD +G P PEITW
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 438 ---NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTA 492
+L + +GRY C+A+ +G + ++ P IS+ + G+
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534
+ C S PP + W + ++ + ++ K
Sbjct: 119 NISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 46/222 (20%), Positives = 70/222 (31%), Gaps = 44/222 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------------LYLTNIT 360
E V L C AE P + W L++ ++
Sbjct: 13 YENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 361 RHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
CE + +G + S LD+ Y P+F + G +N+ CDV NP
Sbjct: 72 L-SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA 130
Query: 421 EITWIHEDSD-----------KVVGNSPNLTLLMTSDDLAGRYYCKA-SVMGFPEVGAEA 468
I W + G L + TSD+ GRY C A + +G E
Sbjct: 131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG--TRFQEY 188
Query: 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ L P P +E S + KV+++
Sbjct: 189 ILALADVP---------SSPYGVKIIELSQTTA----KVSFN 217
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 6e-14
Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 18/189 (9%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
P I+Q T E+ ++ L C A G+P EITW G + + + ++ +
Sbjct: 2 PHIIQLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253
S+L + K + + C+A + K L ++YAPK + EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD--IEYAPKFISNQ-TIYYSWEGNP 117
Query: 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASA----------TELYLTNITRHQHDSIVKC 303
+ + C ++NP W + +PA + L + + C
Sbjct: 118 INISCDVKSNPP-ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNC 175
Query: 304 EVQVSVIGS 312
+ IG+
Sbjct: 176 TAT-NHIGT 183
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
KF + G+ + + C V + + W +D L + +
Sbjct: 102 KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA----KNTTNLKTYSTGRK 157
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
LEI P +D RY C + +G R + L + P P V+
Sbjct: 158 M--ILEIAPTSDNDFGRYNCTATN-HIGT---RFQEYILALADVPSSPYGVK 203
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKE 687
+P II + + + C A P P ++TW + D +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S+L I++ + G Y+C ++ G + L
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 4e-25
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 28/218 (12%)
Query: 38 TAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD-------- 85
A+VG LPC + L+W + G + +
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
Query: 86 ----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
G +L I+ V D +Y C G L V +
Sbjct: 75 RDGITAGKAALRIHNVTASDSGKYLCYFQDG----DFYEKALVELKVAALGSDLHV---- 126
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ +D I LEC S P +I W + G + V A G V +++++
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG-LYAVAASVIM- 184
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+ +C +++ K A + + + Q
Sbjct: 185 --RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQ 220
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 44/203 (21%)
Query: 553 SVQVDRGAGVNLLCDVDGNP---APEITWIHEDSDKVV---------------------- 587
+ G +L C + E+ W+ +VV
Sbjct: 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTS 72
Query: 588 --------GN-SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRT 637
G + + + SD +G+Y C F E +A V LK H
Sbjct: 73 ILRDGITAGKAALRIHNVTASD--SGKYLCYFQDGDFYE---KALVELKVAALGSDLHVD 127
Query: 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE 697
G +EC + P ++ WS E L + +++I+R
Sbjct: 128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA-VAASVIMRG 186
Query: 698 SRHDHFGVYNCSVSNPYGSDSVE 720
S +C++ +
Sbjct: 187 SSG---EGVSCTIRSSLLGLEKT 206
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 26/200 (13%), Positives = 53/200 (26%), Gaps = 50/200 (25%)
Query: 304 EVQVSVIGSNRLVE---GTDVRLYCKA--EANPSHMKYRWYINDQPVP------------ 346
++Q SV+G + + G D L C + M+ +W +
Sbjct: 2 DLQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVED 61
Query: 347 -----------------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
A A L + N+T C + + +++
Sbjct: 62 RQSAPYRGRTSILRDGITAGKAA-LRIHNVT-ASDSGKYLCYFQDGDFYEKA--LVELKV 117
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVVGNSPNLT-------- 440
V+ + G++L C G P P+I W + + + +
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA 177
Query: 441 ---LLMTSDDLAGRYYCKAS 457
++ C
Sbjct: 178 VAASVIMRGSSGEGVSCTIR 197
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-25
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 16/190 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT--WIHED----SDKVVGNSPNLTLLMT 598
PR + D V L C++ + + W + + ++ +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP 657
+ +G Y+C + A AT+ +K P I H R++ G A + C + P
Sbjct: 64 RAEDSGEYHCVYHFVS--APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 658 PEKVTWSYRGEEI---GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
PE W + + SS + ++ E I+ + G Y C+ +N
Sbjct: 122 PE-WMWRKKENGVFEEISNSSGRFFIINK---ENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 715 GSDSVEIMLK 724
GS SV +L+
Sbjct: 178 GSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 7e-20
Identities = 32/211 (15%), Positives = 54/211 (25%), Gaps = 32/211 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV------LQWTKDDFALGPHRNLSGFDRYAMI 82
+ + VTL C + T WTK+ L R
Sbjct: 5 RIVTSEEVIIRDSLLPVTLQCNL---TSSSHTLMYSYWTKNGVELTATRK---------- 51
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-D 141
+ I +D Y C P AT+ V P I
Sbjct: 52 ---NASNMEYRINKPRAEDSGEYHCVYHFV--SAP---KANATIEVKA---APDITGHKR 100
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ E ++ + C + G P E W V + + + ++
Sbjct: 101 SENKNEGQDAMMYC-KSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
+ + C A N+ L++ V
Sbjct: 160 LQITEDPGEYECNATNSIGSASVSTVLRVRV 190
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 2e-18
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT--WIHED----SDKVVGNSPNLTLLMT 444
PR + D V L C++ + + W + + ++ +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP 503
+ +G Y+C + A AT+ +K P I H R++ G A + C + P
Sbjct: 64 RAEDSGEYHCVYHFVS--APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 504 PEKVTWSYRGEEI---GVGSSDDYSVHNDVGKSE 534
PE W + + SS + + N +E
Sbjct: 122 PE-WMWRKKENGVFEEISNSSGRFFIINKENYTE 154
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-17
Identities = 39/178 (21%), Positives = 55/178 (30%), Gaps = 28/178 (15%)
Query: 316 VEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAA---ASATELYLTNITRHQHDSIV-KC 370
V L C ++ M W N + A AS E + DS C
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAE--DSGEYHC 73
Query: 371 EVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-- 428
H V + + T++V P S + G + C G P PE W ++
Sbjct: 74 VYHF-VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132
Query: 429 ---------SDKVVGNSPNLTLL------MTSDDLAGRYYCKAS-VMGFPEVGAEATV 470
+ N N T L +T D G Y C A+ +G V V
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITED--PGEYECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-15
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 40/187 (21%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYS-------- 525
P I++ ++C+ S W+ G E+ + +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 526 ----------VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
V++ V + + T++V P S + G + C G P PE
Sbjct: 64 RAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE 123
Query: 576 ITWIHED-----------SDKVVGNSPNLTLL------MTSDDLAGRYYCKAS-VMGFPE 617
W ++ + N N T L +T D G Y C A+ +G
Sbjct: 124 WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED--PGEYECNATNSIGSAS 181
Query: 618 VGAEATV 624
V V
Sbjct: 182 VSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 20/157 (12%)
Query: 133 DPPRIVQG-DTLYTTEDREIELEC-ISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDG 189
+ PRIV + + + L+C ++++ W +G V +T
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-------VELTA-----T 49
Query: 190 RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
R+ + + + + C + A + VK AP + S
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK---ANATIEVKAAPDI-TGHKRSENKN 105
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286
EG D +YCK+ P H ++ W + V S +
Sbjct: 106 EGQDAMMYCKSVGYP-HPEWMWRKKENGVFEEISNSS 141
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 43/221 (19%), Positives = 72/221 (32%), Gaps = 36/221 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVI--------DKTGVLQWTKDDFALGPHRNLSGFD-------- 77
+ T G V +PC + W +D ++ +
Sbjct: 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66
Query: 78 ---RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R+ ++G ++ + SL I ++D Y +V G + + + L V +
Sbjct: 67 TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 135 PRIVQGDTLYTTEDREIELECI---SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P I + L R L C S PP +W + +
Sbjct: 127 PDIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL------------DPE 172
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
TT S L LTP+ E H T TCQ + + ++L V
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 5e-04
Identities = 31/211 (14%), Positives = 52/211 (24%), Gaps = 52/211 (24%)
Query: 551 PYSVQVDRGAGVNLLCDV-------DGNPAPEITWIHEDSDK-----VVGNSP------- 591
SV V G V + C +P + W + V N+P
Sbjct: 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66
Query: 592 --------------NLTLLMT--SDDLAGRYYCKASVMG-----FPEVGAEATVYLKGRP 630
N +L + + G Y+ + + + V
Sbjct: 67 TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 631 TIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
I G R+ CS S +T+S+ G + +
Sbjct: 127 PDIHFLEPLE-SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR---------- 175
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720
S L + DH C + + E
Sbjct: 176 SSELTLTPRPEDHGTNLTCQMKRQGAQVTTE 206
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 42/295 (14%), Positives = 78/295 (26%), Gaps = 58/295 (19%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH-------------------- 527
+ C +TW + V + +H
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 528 ----NDVGKSEDSETLDVTYGPR----FRARPYSVQVDRGAGVNLLC------DVDGNPA 573
N + + ++ L+C + N
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 574 PEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYL 626
P++ W + D+ G L ++ ++ G Y C AS + +
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 627 K-------GRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG---S 674
RP I+S + T G ++ C+ W + G I
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVL 257
Query: 675 SDDYSVLEDPLK---EGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKP 725
+DY +E+P + + L I E + + C N +G D+ I L
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 8e-18
Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 30/218 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV-------LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
Q V L C ++ LQW KD L
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF----------- 157
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG--D 141
L + V Y C S LG+ +R L P IV +
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANE 217
Query: 142 TLYTTEDREIELECISANGKPPAEITW------IDGTGTVMSNVRVTEEASVDGRRTTVK 195
T+ +I+L C + G+ W ID V+ + E + RR+T+
Sbjct: 218 TMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 196 STLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
+ L ++ + + FTC A+NT +L V
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 37/263 (14%), Positives = 71/263 (26%), Gaps = 38/263 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
E + PC + + G + W KDD ++ + I
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV-----STEQASRIHQH---KE 62
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP----DPPRIVQGDTLYTT 146
L P ++D Y C V + + + + L
Sbjct: 63 KLWFVPAKVEDSGHYYCVVR-NSSYC---LRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 147 EDREIE---LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
D + +E ++ W ++ + + + VK L++
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD---------NIHFSGVKDRLIVMNV 169
Query: 204 KEHHNTTFTCQAQNTAD-------RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
E H +TC A T R + L+ P + + + G+ ++L
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 257 YCKAEANPSHMKYRWYINDQPVP 279
C S W N +
Sbjct: 230 ICNVTGQLS-DIAYWKWNGSVID 251
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 43/312 (13%), Positives = 75/312 (24%), Gaps = 79/312 (25%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDL---- 448
R + C ++ N ITW +DS V + + L
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVP 68
Query: 449 -----AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECS-- 497
+G YYC + A + + Q + C
Sbjct: 69 AKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYM 128
Query: 498 ----AFSIPPPEKVTWSYRGEEI-----------------GVGSSD--DYS--VHNDVGK 532
+ P+ + W + + V +Y+
Sbjct: 129 EFFKNENNELPK-LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG 187
Query: 533 SEDSETLDV---TYGPRFRARPY-------SVQVDRGAGVNLLCDVDGNPAPEITWIHE- 581
+ T + T RP +++VD G+ + L+C+V G + W
Sbjct: 188 KQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG 247
Query: 582 ---DSDKVVGNSPNLTLLM------------------TSDDLAGRYYCKAS-VMGFPEVG 619
D D V ++ S + C A G
Sbjct: 248 SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI---- 303
Query: 620 AEATVYLKGRPT 631
A + L T
Sbjct: 304 DAAYIQLIYPVT 315
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 8e-13
Identities = 46/306 (15%), Positives = 77/306 (25%), Gaps = 85/306 (27%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE--------LYLTNITRHQHDS- 299
C N WY +D P + L+ DS
Sbjct: 18 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK--VEDSG 75
Query: 300 -----------IVKCEVQVSVIGSN-------------RLVEGTDVRLYC------KAEA 329
++ ++ + + +L D L C K E
Sbjct: 76 HYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 330 NPSHMKYRWYINDQPVPA-----AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384
N K +WY + +P+ + L + N+ H C + T
Sbjct: 136 NELP-KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK-HRGNYTCHASYTYLGKQYPIT 193
Query: 385 LDV---TYGPRFRARPY-------SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSD 430
+ T RP +++VD G+ + L+C+V G + W D D
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253
Query: 431 KVVGNSPNLTLLM------------------TSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
V ++ S + C A G A +
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI----DAAYIQ 309
Query: 472 LKGRPT 477
L T
Sbjct: 310 LIYPVT 315
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 7/125 (5%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
+ C +TW + V + + + K L ++ +
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH------KEKLWFVPAKVE 72
Query: 702 HFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761
G Y C V N ++I K ++ P L I + VA ++C
Sbjct: 73 DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD-GGLVCPYMEFF 131
Query: 762 PPPGN 766
N
Sbjct: 132 KNENN 136
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 26/200 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKV-----VGNSPNL 593
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII------SHRTQFGIPGDTA 646
+ +DD A Y +A+ G V A++ ++ I + G+
Sbjct: 65 IIASVTDDDATVYQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706
++ P P +TW + I ++ Y V+ S + G Y
Sbjct: 123 SIKIPFSGKPDPV-ITWQKGQDLI--DNNGHYQVIVT---RSFTSLVFPNGVERKDAGFY 176
Query: 707 NCSVSNPYGSDSVEIMLKPQ 726
N +G D + L
Sbjct: 177 VVCAKNRFGIDQKTVELDVA 196
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F E ++ S TL C+V +++W + + I +
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD------GLKYRIQEFKG 59
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTLY 144
G + L I V DD YQ + + G S A+L V VP P + ++
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQG-GS---VSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ ++ +GKP ITW G + +N + + +
Sbjct: 116 ALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK--- 171
Query: 205 EHHNTTFTCQAQNTADRTYKVARLK 229
+ A+N K L
Sbjct: 172 --DAGFYVVCAKNRFGIDQKTVELD 194
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 43/221 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS----------ATELYLTNITRHQHD 365
++ L CK +P +WY + + A +L + ++T
Sbjct: 17 RYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 366 SIVKCEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 420
N G + +L+V + P+ +V RG V++ G P P
Sbjct: 76 VYQ-VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 421 EITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKA-SVMGFPEVGAEAT 469
ITW I + V + + T L+ + + AG Y A + G
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG--IDQKTVE 192
Query: 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ + P P + S S+ +TW+
Sbjct: 193 LDVADVP---------DPPRGVKVSDVSRDSV----NLTWT 220
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 23/157 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKV-----VGNSPNL 439
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII------SHRTQFGIPGDTA 492
+ +DD A Y +A+ G V A++ ++ I + G+
Sbjct: 65 IIASVTDDDATVYQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
++ P P +TW + I ++ Y V
Sbjct: 123 SIKIPFSGKPDPV-ITWQKGQDLI--DNNGHYQVIVT 156
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 15/152 (9%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P + L L C G P + W G + ++ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG-- 60
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN----R 247
L++ + T + +A N A L+ V+ K+ +
Sbjct: 61 ---YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE--VEVPAKIHLPKTLEGMGAVH 115
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G V + P W +
Sbjct: 116 ALRGEVVSIKIPFSGKPD-PVITWQKGQDLID 146
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 25/149 (16%), Positives = 39/149 (26%), Gaps = 28/149 (18%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP----------------NLT 440
VD G+ V+L CD D E+ I KV ++
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 441 L----LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RPTIISHRTQFGIPGDTARV 494
+ D +G+Y C + + +K I R ++
Sbjct: 69 FHIPSVQVRD--SGQYRCLVICGAAWD---YKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Query: 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDD 523
C A P E V+W
Sbjct: 124 TCQARGYPLAE-VSWQNVSVPANTSHIRT 151
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 8e-07
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 30/192 (15%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
TV P + + G + + LEC + + E+ I + + N +
Sbjct: 4 TVTAPKEVYTVDVGSS--------VSLEC-DFDRRECTELEGIRASLQKVENDT----SL 50
Query: 187 VDGRRTTVKS-------TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
R T ++ + + + + C A YK +K+ Y
Sbjct: 51 QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR--- 107
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT-----R 294
+ +V+L C+A P + W P + T L +T +
Sbjct: 108 -IDTRILEVPGTGEVQLTCQARGYP-LAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK 165
Query: 295 HQHDSIVKCEVQ 306
Q C
Sbjct: 166 PQPSRNFSCMFW 177
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 43/219 (19%), Positives = 66/219 (30%), Gaps = 35/219 (15%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 590
+ V G + P S V G V L C G+P + W + + GN+
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT 64
Query: 591 PNLTLLMTSDDLAGRYYCKAS--------------VMGFPEVGAEATVYLKGRPTIISH- 635
L AG Y C+ + V PE + + I
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
Query: 636 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
+Q +PG T ++C A P P W + + K +
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHET---------------KKLYM 168
Query: 695 IRESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSFP 730
+ +H G Y C V N S VEI++ +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-20
Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 32/211 (15%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 436
+ V G + P S V G V L C G+P + W + + GN+
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT 64
Query: 437 PNLTLLMTSDDLAGRYYCKAS--------------VMGFPEVGAEATVYLKGRPTIISH- 481
L AG Y C+ + V PE + + I
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
Query: 482 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDD--YS-- 525
+Q +PG T ++C A P P W + V Y
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCH 183
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQV 556
V+ND + + + P + +
Sbjct: 184 VYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 5e-18
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 21/158 (13%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV-KCEVHND 375
G V+L C+A +P ++Y+W+ ++ +P ++ L + D+ C V+N+
Sbjct: 32 AGQFVKLCCRATGHPF-VQYQWFKMNKEIPNGNTSE-LIFNAVHVK--DAGFYVCRVNNN 87
Query: 376 VGKSEDSE-TLDVTYGP---------------RFRARPYSVQVDRGAGVNLLCDVDGNPA 419
LDV P + P S ++ G+ + L C G+P
Sbjct: 88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPI 147
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
P W + + + G Y+C
Sbjct: 148 PHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-16
Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 59/228 (25%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K + P+ + + G V L CR TG QW K + +
Sbjct: 20 KITVNPESKAVLAGQFVKLCCRA---TGHPFVQYQWFKMNKEI----------------- 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD----------- 133
L V + D Y C+V+ S+++ L V P+
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNN-FTF--EFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 134 -PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
+I + + L+C A G P W + + + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNE-----------LPLTHETK 164
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
+ ++ H T+ C N D +++ +
Sbjct: 165 K-----LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-IIIDELNNL 206
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 8e-16
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 33/178 (18%)
Query: 466 AEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--- 521
++ + I + ++ + G ++ C A P + W +EI G++
Sbjct: 9 HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNGNTSEL 67
Query: 522 -------DD---YS--VHNDVGKSEDSE-TLDVTYGP---------------RFRARPYS 553
D Y V+N+ LDV P + P S
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
++ G+ + L C G+P P W + + + G Y+C
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 43/217 (19%)
Query: 222 TYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
+ LV K+ V+ ++ V G V+L C+A +P ++Y+W+ ++ +P
Sbjct: 5 HHHHHHSSGLVPRGSKITVNP--ESKAVLAGQFVKLCCRATGHPF-VQYQWFKMNKEIPN 61
Query: 281 AASATELYLTNITRHQ-----------HDSIVKCEVQVSVIG------------------ 311
++ L + Q+ V
Sbjct: 62 GNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 312 ------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365
S +L+ G+ + L C A +P Y+W+ N+ P+ + + +H
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL-EHQ 177
Query: 366 SIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQV 402
C V+ND + + + P + +
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 7e-12
Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 35/190 (18%)
Query: 121 SRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNV 179
+ LVP V ++ + ++L C A G P + W
Sbjct: 6 HHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNK------- 57
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
+ T S L+ + C+ N + +L V P+
Sbjct: 58 ------EIPNGNT---SELIFNAVHVKDAGFYVCRVNNNFTFEFS-QWSQLDVCDIPESF 107
Query: 240 VSVIG--------------SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 285
+ S +L+ G+ + L C A +P Y+W+ N+ P+
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL 166
Query: 286 ELYLTNITRH 295
+ +
Sbjct: 167 -YMVPYVDLE 175
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 4e-09
Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 27/112 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP Q + GS + L C G QW K++ L
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVA---VGSPIPHYQWFKNELPLTH--------------- 161
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
E + V L+ Y C V S+ + + +
Sbjct: 162 --ETKKLYMVPYVDLEHQGTYWCHVYND-RDS--QDSKKVEIIIDELNNLGH 208
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 49/311 (15%), Positives = 87/311 (27%), Gaps = 68/311 (21%)
Query: 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------G 517
P + + + ++C +I + W EI
Sbjct: 8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITE 67
Query: 518 VGSSDD--YSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG--- 570
D Y V +D GK + L + + +G
Sbjct: 68 FSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQL 127
Query: 571 -------NPAPEITWIHED-----SDKV----VGNSPNLTLLMTSDDLAGRYYCKA---- 610
++ W H SD+V G L + + + G+Y +
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Query: 611 ---------SVMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTARVECSAF 653
S + E AE A + K R ++ G + C+ +
Sbjct: 188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247
Query: 654 SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713
PPPE V+W + + S D ++ + G + I G Y V N
Sbjct: 248 GDPPPE-VSWLKNEKALA--SDDHCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 714 YGSDSVEIMLK 724
YGS++ + +
Sbjct: 302 YGSETSDFTVS 312
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 39/276 (14%), Positives = 79/276 (28%), Gaps = 50/276 (18%)
Query: 32 MEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+E V L C+V I K + W KD+ + +++ ++G
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD------EKHDF----KDGI 60
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+L I D Y+ + G+ L + V + D
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDD-RGK---DKSRLKLVDEAFKELMMEVCKKIALSATDL 116
Query: 150 EIE-------LECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+I+ L ++ W +G+ + + RV V G + L +
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS-AIRYSDRVK--TGVTGEQ----IWLQIN 169
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLK------------------LLVKYAPKVQVSVI 243
+ + + + K L + K +V +
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 244 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ EG + L C +P + W N++ +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALA 264
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 4e-19
Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 30/208 (14%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHED-----SDKVVGNSPN 592
+D GP F S +V V L C V I W ++ +K
Sbjct: 2 IDPFTGPHF-VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 593 LTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTAR 647
TLL + D AG Y G + + + + ++ + + +
Sbjct: 61 CTLLITEFSKKD-AGIYEVILKDDRG--KDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117
Query: 648 VECSAFSIP---------PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698
++ +A I KV WS+ G I SD G + L I E
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVT----GEQIWLQINEP 171
Query: 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+ G Y + + + L Q
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 1e-16
Identities = 49/369 (13%), Positives = 100/369 (27%), Gaps = 115/369 (31%)
Query: 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
P P V+ + T + + L+C AN K I W + + + + +
Sbjct: 4 PFTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI--- 60
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
TL++T + + ++ + +RLKL+ + ++
Sbjct: 61 -----CTLLITEFSKKDAGIYEVILKDDRGKDK--SRLKLVDEAFKEL------------ 101
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
+ + A SAT+L +
Sbjct: 102 ----------------------MMEVCKKIALSATDLKIQ-------------------- 119
Query: 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLTNITRH 362
++LY +K W N + + L + T
Sbjct: 120 -----STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT-- 172
Query: 363 QHDS-IVKCEVHNDVGKSEDSETLDV---------------------TYGPRFRARPYSV 400
+D E+ + + + L P V
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 232
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------------ 448
+ G +NL C+V G+P PE++W+ +K + + + L +
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKN--EKALASDDHCNLKFEAGRTAYFTINGVSTAD 290
Query: 449 AGRYYCKAS 457
+G+Y
Sbjct: 291 SGKYGLVVK 299
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 26/247 (10%), Positives = 64/247 (25%), Gaps = 48/247 (19%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-----------LQWTKDD 64
S L ++ ME + A+ + + + + W+ +
Sbjct: 87 DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG 146
Query: 65 FALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFA 124
A+ DR L+I +D +Y ++ G +
Sbjct: 147 SAIRYS------DRVKT--GVTGEQIWLQINEPTPNDKGKYVMELFDGK-TG---HQKTV 194
Query: 125 TLTVLVPPD------------------PPRIVQG-DTLYTTEDREIELECISANGKPPAE 165
L+ + + D + E + + L C + G PP E
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC-NVWGDPPPE 253
Query: 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225
++W+ + S+ + + + + + +N
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSD 308
Query: 226 ARLKLLV 232
+ + +
Sbjct: 309 FTVSVFI 315
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 12/139 (8%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P + + + ++C +I + W EI + + +
Sbjct: 8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS--VDEKHDFKDG------ 59
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML----KPQKSFPLLLILTGVIGCVVIL 745
TL+I E G+Y + + G D + L + + + + I
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 746 VALTMVVILCQRKVKKPPP 764
+ +
Sbjct: 120 STAEGIQLYSFVTYYVEDL 138
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRY 79
+ R + P T G + L C V G + W K++ AL D +
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAS-------DDH 268
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
+ + I V D +Y V G + T++V +P
Sbjct: 269 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKN-KYGS---ETSDFTVSVFIP 316
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-24
Identities = 53/431 (12%), Positives = 104/431 (24%), Gaps = 98/431 (22%)
Query: 38 TAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD---------EE 87
G V L C K+ W + S + +D ++
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G++ L I + ++D Y C+V + + D ++QG +L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED-----QKEEVQLLVFGLTANSDTH-LLQGQSL---- 114
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L + + G + TL ++ +
Sbjct: 115 ----TLTL-ESPPGSSPSVQCRSPRGKNIQG----------------GKTLSVSQLELQD 153
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 267
+ T+TC ++ ++ ++V K V L E
Sbjct: 154 SGTWTCTVLQ--NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211
Query: 268 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327
+ W + +L ++ + K ++ +
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH--------------- 256
Query: 328 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSETLD 386
L L S + + GK L
Sbjct: 257 --------------------------LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 446
V NL C+V G +P++ + +K S + +
Sbjct: 291 VMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLN 337
Query: 447 DLAGRYYCKAS 457
AG + C S
Sbjct: 338 PEAGMWQCLLS 348
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 9e-20
Identities = 43/353 (12%), Positives = 95/353 (26%), Gaps = 68/353 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
+G V L C A S +++ W ++Q + L + +
Sbjct: 7 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 370 ------------------CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLL 411
CEV + + + +T + +G + L
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLT 117
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-------------V 458
+ +P + K + L++ +G + C V
Sbjct: 118 LESPPGSSPSVQCRSPRG-KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Query: 459 MGFPEVGAEATVYLKGRPTIISHRTQFGI--PGDTARVECSAFSIPPPE----------K 506
+ F + + +G S F + + + A + +
Sbjct: 177 LAFQKASSIVYK-KEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 235
Query: 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE--------TLDVTYGPRFRARPYSVQVDR 558
V+ ++ + +H + ++ L+ G + V
Sbjct: 236 VSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
NL C+V G +P++ + +K S + + AG + C S
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLS 348
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 3e-17
Identities = 40/344 (11%), Positives = 91/344 (26%), Gaps = 70/344 (20%)
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
V +G V L C + + W + + K++GN G + K
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ-------------GSFLTKGPSK 50
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519
+ +++ +G +I + D+ C
Sbjct: 51 LNDRADSRRSLWDQGNFPLIIKNLK---IEDSDTYICEV--------------------- 86
Query: 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI 579
+ + + +T + +G + L + +P +
Sbjct: 87 -------EDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLTLESPPGSSPSVQCR 131
Query: 580 HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-------------VMGFPEVGAEATVYL 626
K + L++ +G + C V+ F + +
Sbjct: 132 SPRG-KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYK-K 189
Query: 627 KGRPTIISHRTQFGI--PGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLED 683
+G S F + + + A +T+ + +E+ V L+
Sbjct: 190 EGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQM 249
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
K + TL ++ G ++ G E+ L +
Sbjct: 250 GKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR 293
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 32/300 (10%), Positives = 81/300 (27%), Gaps = 67/300 (22%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
D + G +TL +Q G + +G
Sbjct: 103 NSDTHLLQGQSLTLTLES---PPGSSPSVQCRSPR------------------GKNIQGG 141
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV---QGDTLYTT 146
+L + + L D + C V + + VL IV +G+ + +
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQN--QKKVEFK--IDIVVLAFQKASSIVYKKEGEQVEFS 197
Query: 147 EDREIELECISANGK----------PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS 196
+E ++ +G+ + IT+ V + G++ +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256
TL + + T + + ++ L ++ L
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR----------------ATQLQKNL 301
Query: 257 YCKAEANPS-HMKYRWYINDQPVPAAASATELYLTN--------ITRHQHDSIVKCEVQV 307
C+ S + + ++ + +++ N + +++ ++V
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 49/336 (14%), Positives = 92/336 (27%), Gaps = 61/336 (18%)
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500
++ +++ ++ K + A+ + +L G+ +C
Sbjct: 1 MIDIENEI-TEFFNKMR----DTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIE 55
Query: 501 IP--------PPEKVTWSYRGEEIG---------------VGSSDD---YS--VHNDVGK 532
V W G+ S+D Y V G
Sbjct: 56 DSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD 115
Query: 533 SE-DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITW------IHEDSD 584
+ P Y + G++L C + ITW + D
Sbjct: 116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT 175
Query: 585 KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK------------GRPTI 632
K + NL + + +GRY C + +V + + + R +
Sbjct: 176 KYSQSGQNLIIHNPELEDSGRYDCYVH---YDDVRIKNDIVVSRCKILTVIPSQDHRFKL 232
Query: 633 ISHRTQFGIPGDTARVECSAFSIPPPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
I G+ A + C+A S + W I YS+L
Sbjct: 233 ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI-T 291
Query: 690 KSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLK 724
++TL ++ G Y C N Y ++ +
Sbjct: 292 EATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 1e-18
Identities = 37/268 (13%), Positives = 71/268 (26%), Gaps = 49/268 (18%)
Query: 33 EPQDQTAVVGSRVTLPCRVID----------KTGVLQWTKDDFALGPHRNLSGFDRYAMI 82
+ A +G + C I+ K V+ W K P
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR---------- 84
Query: 83 GSDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
+ L I +D RY C V+T + PP I +
Sbjct: 85 ---RVKNGDLWIANYTSNDSHRRYLCTVTTK---NGDCVQGIVRSHIRKPPS--CIPETY 136
Query: 142 TLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
L T + I+L C K ITW + ++ + ++ L++
Sbjct: 137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----------GQNLII 186
Query: 201 TPKKEHHNTTFTCQAQNTADRTYK------VARLKLLVKYAPKVQVSVIGSNRLVEGTDV 254
+ + + C R L ++ + ++ + + G
Sbjct: 187 HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPA 246
Query: 255 RLYCKAEANP---SHMKYRWYINDQPVP 279
+ C A + + W +
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWII 274
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 5e-16
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 23/208 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
E + + L C ++ + W K++ L +
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY-----------SQSGQ 182
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEP--AIRSRFATLTVLVPPDPPRIV-QGDTLYTTE 147
+L I+ L+D RY C V + + SR LTV+ D + + T
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
Query: 148 DREIELECISANGKP----PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP- 202
+ C +A I W + +G ++ + + ++TL
Sbjct: 243 GEPANITC-TAVSTSLLVDDVLIDWENPSGWIIGLDF-GVYSILTSSGGITEATLYFENV 300
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKL 230
+E+ T+TC+ N + L
Sbjct: 301 TEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 9e-12
Identities = 33/306 (10%), Positives = 67/306 (21%), Gaps = 55/306 (17%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
+C + D V + R
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKC-PPIEDSLLSHRYNDKDNVVNW--EKIGKTRRPLNR 84
Query: 192 TTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
L + + + C + ++ ++ P +
Sbjct: 85 RVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPE-TYELGTHD 142
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPA-----AASATELYLTNITRH---------- 295
+ LYC + WY N+Q + + S L + N
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 296 ------QHDSIVKCEVQVSVIG------------SNRLVEGTDVRLYCKAEANP---SHM 334
++D +V ++VI + G + C A + +
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV 262
Query: 335 KYRWYINDQPVP-------------AAASATELYLTNITRHQHDSIVKCEVHNDVGKSED 381
W + + LY N+T + C HN
Sbjct: 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTL 322
Query: 382 SETLDV 387
+ T+ +
Sbjct: 323 TTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 2e-10
Identities = 35/294 (11%), Positives = 65/294 (22%), Gaps = 66/294 (22%)
Query: 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE--------ANPSHMKYRWYINDQPVPA 280
K P ++ G C N W +
Sbjct: 22 KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 281 AASATE---LYLTNITRHQHDSIVKCEVQVSVIGSNR---------------------LV 316
+ L++ N T + C V +
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTH 141
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPA-----AASATELYLTNITRHQHDSIVKCE 371
+ + LYC + WY N+Q + + S L + N C
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE-DSGRYDCY 200
Query: 372 VHNDVGKSEDSETLDVT---------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE- 421
VH D + ++ + + V G N+ C
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVD 260
Query: 422 ---ITWIHEDSDKVVGNSPNLTLL---------------MTSDDLAGRYYCKAS 457
I W + + + ++L +T + + Y C+
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGH 314
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 27 EQKFAMEPQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDFALGPHRNLSGFDRYAM 81
+ + +G + C + ++ W G L +
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS---GWIIGLDFGVYSIL 284
Query: 82 IGSDEEGDYSLEIYPVMLDDDAR-YQCQVSTGILGEPAIRSRFATLTV 128
S + +L V + Y C+ + ++ T+ +
Sbjct: 285 TSSGGITEATLYFENVTEEYIGNTYTCRGHN-YYFD---KTLTTTVVL 328
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 5e-24
Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 10/175 (5%)
Query: 556 VDRGAGVNLLCDVDGNPAPEI--TWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
D G+ + L C ++ + W+ + + SDD G Y C
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 612 VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 670
PE A + L G P + + ++ G+TA + C + S+PP W +
Sbjct: 70 ----PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125
Query: 671 GVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ +S L I + G Y C+ ++ GSD I L+
Sbjct: 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-15
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 9/143 (6%)
Query: 402 VDRGAGVNLLCDVDGNPAPEI--TWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
D G+ + L C ++ + W+ + + SDD G Y C
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 458 VMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
PE A + L G P + + ++ G+TA + C + S+PP W +
Sbjct: 70 ----PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125
Query: 517 GVGSSDDYSVHNDVGKSEDSETL 539
+ V S+ L
Sbjct: 126 DKALMNGSESRFFVSSSQGRSEL 148
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 1e-13
Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 34/204 (16%)
Query: 37 QTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLE 93
+GS++ L C + D +W K ++ D E
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGG---------------VVLKEDALPGQKTE 52
Query: 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREIE 152
D Y C +G A + + PP R+ + + E
Sbjct: 53 FKVDSDDQWGEYSCVFLPEPMGT-------ANIQLHGPP---RVKAVKSSEHINEGETAM 102
Query: 153 LECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP-KKEHHNTT 210
L C + PP + W T + + E+ + +S L + E
Sbjct: 103 LVC-KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161
Query: 211 FTCQAQNTADRTYKVARLKLLVKY 234
+ C ++ + L+ V+
Sbjct: 162 YRCNGTSSKGSDQAIITLR--VRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-13
Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 36/187 (19%)
Query: 317 EGTDVRLYCKAEANPS-HMKYRWYINDQPVP-AAASATELYLTNITRHQHDSIVKCEVHN 374
G+ + L C + + +RW + A + + C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD-DQWGEYSCVFLP 70
Query: 375 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK-- 431
+ + + + PR +A S ++ G L+C + P + W +
Sbjct: 71 EPMGTA---NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 432 ----------VVGNSPNLTLL------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLKG 474
V +S + L M +D G+Y C + G +A + L
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEAD--PGQYRCNGT----SSKGSDQAIITL-- 179
Query: 475 RPTIISH 481
+ SH
Sbjct: 180 --RVRSH 184
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 5e-12
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 34/173 (19%)
Query: 250 EGTDVRLYCKAEANPS-HMKYRWYINDQPVP-AAASATELYLTNITRHQHDSIVKCEVQV 307
G+ + L C + + +RW + A + + C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD-DQWGEYSCVFLP 70
Query: 308 SVIGSNRL-----------------VEGTDVRLYCKAEANPSHMKYRWYINDQP------ 344
+G+ + EG L CK+E+ P + WY
Sbjct: 71 EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM 130
Query: 345 --------VPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389
V ++ +EL++ N+ +C + G + TL V
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 9e-11
Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 45/188 (23%)
Query: 483 TQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS----- 536
T G + CS W G + + V +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSC 66
Query: 537 ---------ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK- 585
+ + PR +A S ++ G L+C + P + W +
Sbjct: 67 VFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126
Query: 586 -----------VVGNSPNLTLL------MTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
V +S + L M +D G+Y C + G +A + L
Sbjct: 127 KALMNGSESRFFVSSSQGRSELHIENLNMEAD--PGQYRCNGT----SSKGSDQAIITL- 179
Query: 628 GRPTIISH 635
+ SH
Sbjct: 180 ---RVRSH 184
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 21 SLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWT--KDDFALGPHRNLSGFDR 78
++ + + + G L C+ V W K + R
Sbjct: 77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESR 136
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTV 128
+ + S G L I + ++ D +Y+C ++ G TL V
Sbjct: 137 FFVSSSQ--GRSELHIENLNMEADPGQYRCNGTSSK-GSD---QAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 637 TQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
T G + CS W G + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEF 53
Query: 696 RESRHDHFGVYNCSVSN-PYGSDSVEIMLKPQ 726
+ D +G Y+C P G+ ++++ P+
Sbjct: 54 KVDSDDQWGEYSCVFLPEPMGTANIQLHGPPR 85
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 7e-24
Identities = 57/365 (15%), Positives = 88/365 (24%), Gaps = 82/365 (22%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVVGNSPNLTLLMT 444
+ + G V L C G P W+ S++V+ L +L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP 504
S + +G Y C+ + V
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRV---------------------------------- 94
Query: 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF----RARPYSVQVDRGA 560
+ S ++ G+ E +T T P + R + V
Sbjct: 95 ---------------TDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAAN 139
Query: 561 GVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYCKA 610
V C GNP P I+W+ + K+ +L + G Y C
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 611 S-VMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPPPEKVTWSY 665
G V + I + G C +S P + W
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLK 258
Query: 666 RGEEIGVGSSDDYSVLEDPLKEGIK-------STLIIRESRHDHFGVYNCSVSNPYGSDS 718
E G D + LK L + + G Y C N G
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH 318
Query: 719 VEIML 723
L
Sbjct: 319 HSAWL 323
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 2e-19
Identities = 43/304 (14%), Positives = 85/304 (27%), Gaps = 42/304 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + G V L C + W KD L +R +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG------TGLVPSERVLV------ 58
Query: 88 GDYSLEIYPVMLDDDARYQC--------------QVSTGILGEPAIRSRFATLTVLVPPD 133
G L++ +D Y C +V+ V
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 134 PPRIVQGD-----TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
P + + L + C A G P I+W+ R+
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQVSVIGSN 246
+ +LV+ +TC +N + L +L + + P +Q + +
Sbjct: 178 Q-----QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 232
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
V G+DV +CK ++ +W + + + + + + E++
Sbjct: 233 TAVLGSDVEFHCKVYSDA-QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 307 VSVI 310
V +
Sbjct: 292 VLSL 295
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 7e-19
Identities = 45/232 (19%), Positives = 67/232 (28%), Gaps = 31/232 (13%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDR 78
A Y + M+ + + V C G + W K+ + G
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREFRGEHRIGGI-- 173
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV 138
+SL + V+ D Y C V G IR TL VL I+
Sbjct: 174 -----KLRHQQWSLVMESVVPSDRGNYTCVVENK-FGS--IRQT-YTLDVLERSPHRPIL 224
Query: 139 QGDT---LYTTEDREIELECISANGKPPAEITW-----IDGTGTVMSNVRVTEEASVDGR 190
Q ++E C I W ++G+ G
Sbjct: 225 QAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 191 RTTVK--STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQV 240
TT K L L +TC A N+ ++ A L+V A + V
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW--LVVLPAEEELV 333
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 9e-16
Identities = 47/335 (14%), Positives = 79/335 (23%), Gaps = 73/335 (21%)
Query: 234 YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYL 289
P + G V L C W + + + L +
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 290 TNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLY-CKAEANPSHMKYRWYINDQPVPAA 348
N + D Y C+ + + + P++
Sbjct: 66 LNASH------------------------EDSGAYSCRQR-LTQRVLCHFSVRVTDAPSS 100
Query: 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRF----RARPYSVQVDR 404
++ G+ E +T T P + R + V
Sbjct: 101 GD-----------------------DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA 137
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYC 454
V C GNP P I+W+ + K+ +L + G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 455 KAS-VMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPPPEKVTW 509
G V + I + G C +S P + W
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQW 256
Query: 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG 544
E G D + + V K+ + T D
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 3e-15
Identities = 59/381 (15%), Positives = 92/381 (24%), Gaps = 100/381 (26%)
Query: 131 PPDPPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASV 187
+ P G + L +EL C G P W+ DG
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247
R L + + ++C+ + T +
Sbjct: 53 SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFS--------------------- 91
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV 307
V TD E + P Y T R +
Sbjct: 92 -VRVTDAPSSGDDEDGEDEAEDTGVDTGAP----------YWTRPERMDKKLLA------ 134
Query: 308 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN------ITR 361
+ VR C A NP+ W N + + L + +
Sbjct: 135 -------VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 186
Query: 362 -HQHDS-IVKCEVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLLCDV 414
D C V N G + TLDV P + G+ V C V
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246
Query: 415 DGNPAPEITWIHE----------------------DSDKVVGNSPNLTLLMTSDDLAGRY 452
+ P I W+ ++ L+L + + AG Y
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 453 YCKAS-VMGFPEVGAEATVYL 472
C A +GF + + +L
Sbjct: 307 TCLAGNSIGF----SHHSAWL 323
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 4e-15
Identities = 46/252 (18%), Positives = 70/252 (27%), Gaps = 40/252 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVVGNSPNLTLLMT 598
+ + G V L C G P W+ S++V+ L +L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKG-------------------------RPTII 633
S + +G Y C+ + V RP +
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTL 693
+ +T R C A P P ++W G E L + +L
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQ-----QWSL 182
Query: 694 IIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVI 753
++ G Y C V N +GS L + P IL + V + V
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242
Query: 754 LCQRKVK-KPPP 764
C KV P
Sbjct: 243 HC--KVYSDAQP 252
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDR 78
+ +R A P +QTAV+GS V C+V +QW K G G
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 79 YAMIGSD-----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ + ++ L ++ V +D Y C I G A L VL
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI-GF---SHHSAWLVVLPA-- 328
Query: 134 PPRIVQ 139
+V+
Sbjct: 329 EEELVE 334
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 7e-24
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P R V G L C + G P P+I W + + + + L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECS 651
+D G Y C A+ +G E ++ + + P +G G T R+
Sbjct: 68 MTEEQED-EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRE-SRHDHFGVYNCSV 710
P P +TW + + + +S++ ++ + L+++ R H G Y +
Sbjct: 127 YIGRPVPA-MTWFHGQKLL--QNSENITIENT----EHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 711 SNPYGSDSVEIMLK 724
SN +G+ + ++
Sbjct: 180 SNVFGTVDAILDVE 193
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-23
Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 26/210 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
E +D T +G L C++ G ++W + L R +Y M
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQI---VGRPLPDIKWYRFGKELIQSR------KYKMS-- 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIVQGDTL 143
+ ++L + +D+ Y C ++T +GE + + + L + P P +
Sbjct: 58 SDGRTHTLTVMTEEQEDEGVYTC-IATNEVGE--VETS-SKLLLQATPQFHPGYPLKEKY 113
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
Y + L G+P +TW G + ++ +T E + +K+ +
Sbjct: 114 YGAVGSTLRLHV-MYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKN-----VQ 167
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
++ H + Q N + +++ K
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 7e-17
Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 32/185 (17%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
G +L C+ P +WY + + + L + Q D
Sbjct: 20 KLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE--QEDEG 76
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEIT 423
+ C N+VG+ E S L + P+F G+ + L G P P +T
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 424 WIHEDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATV 470
W H K++ NS N+T+ T AG+Y + S V G V A V
Sbjct: 137 WFHG--QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG--TVDAILDV 192
Query: 471 YLKGR 475
++ +
Sbjct: 193 EIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 4e-16
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 17/152 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P R V G L C + G P P+I W + + + + L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECS 497
+D G Y C A+ +G E ++ + + P +G G T R+
Sbjct: 68 MTEEQED-EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
P P +TW + + + +S++ ++ N
Sbjct: 127 YIGRPVPA-MTWFHGQKLL--QNSENITIENT 155
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 46/195 (23%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
P I + G+ A++ C P P+ + W G+E+
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD-IKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 517 --GVGSSD--DYSV--HNDVGKSEDSETLDVTYGPRFRARPY---SVQVDRGAGVNLLCD 567
D Y+ N+VG+ E S L + P+F G+ + L
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 568 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMG 614
G P P +TW H K++ NS N+T+ T AG+Y + S V G
Sbjct: 127 YIGRPVPAMTWFHG--QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 615 FPEVGAEATVYLKGR 629
V A V ++ +
Sbjct: 185 --TVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 23/176 (13%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P I + + T +L C G+P +I W G ++ + + + S DGR
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGK-ELIQSRKY--KMSSDGR- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL--V 249
TL + +++ +TC A N ++L ++ P+ +
Sbjct: 62 ---THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL--LQATPQFHPGYPLKEKYYGA 116
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP--------AAASATELYLTNITRHQH 297
G+ +RL+ P W+ + + T L + N+ R H
Sbjct: 117 VGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 8e-24
Identities = 37/269 (13%), Positives = 67/269 (24%), Gaps = 41/269 (15%)
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS---------------------- 525
T + CS V W +E +
Sbjct: 14 VSSTFVLTCSG-----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 526 -VHNDVGKSEDSE-TLDVTYGPRFRA------RPYSVQVDRGAGVNLLCDVDGNPAPEIT 577
++ G D L + + + + + C V P +T
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 578 WIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI---IS 634
+ D + + + Y CK ++ VY +I ++
Sbjct: 128 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 187
Query: 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
G+ + C W+Y +E G L D I+S L
Sbjct: 188 AVQTVVRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYH-IRSILH 245
Query: 695 IRESRHDHFGVYNCSVSNPYGSDSVEIML 723
I + + G Y C+V+ E +
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAI 274
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 3e-18
Identities = 35/239 (14%), Positives = 61/239 (25%), Gaps = 25/239 (10%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-------LYLTNITRHQHDSI 367
L + L C A W Q P + + L LTN+T
Sbjct: 12 LNVSSTFVLTCSGSA-----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG-LDTGE 65
Query: 368 VKCEVHNDVGKSEDSE-TLDVTYGPRFRA------RPYSVQVDRGAGVNLLCDVDGNPAP 420
C ++ G D L + + + + + C V P
Sbjct: 66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQL 124
Query: 421 EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI-- 478
+T + D + + + Y CK ++ VY +I
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINV 184
Query: 479 -ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536
++ G+ + C W+Y +E G D+ S
Sbjct: 185 SVNAVQTVVRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRS 242
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 4e-17
Identities = 41/282 (14%), Positives = 79/282 (28%), Gaps = 37/282 (13%)
Query: 32 MEPQDQTAVV--GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ P V+ S L C + + W + + D
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSG---SAPVVWERMSQEP---------PQEMAKAQDGTFS 50
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP--PRIVQGDTLYTTE 147
L + + D Y C + G + + V P P + ++ TE
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDS-RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE 109
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
EI + C + P +T + G V V D +R
Sbjct: 110 ITEITIPCRVTD--PQLVVTLHEKKGDVALPV------PYDHQRGFSGI---------FE 152
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSH 266
+ ++ C+ DR + + VSV +V +G ++ L C N
Sbjct: 153 DRSYICKTTI-GDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV- 210
Query: 267 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVS 308
+ + W + +L ++ H + ++
Sbjct: 211 VNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE 252
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 2e-14
Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
E + +T+PCRV D V+ + + Y
Sbjct: 100 AEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVAL-----------------PVPYD 142
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
+ + +D Y C+ + G + S + L V + I
Sbjct: 143 HQRGFSGIFEDRSYICKTTIGDR---EVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C G W V + +D ++S L + + + T+
Sbjct: 200 TLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-YHIRSILHIPSAELEDSGTY 257
Query: 212 TCQAQNTADRTYKVARLKLLV 232
TC + + + + V
Sbjct: 258 TCNVTESVNDHQDEKAINITV 278
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 42/301 (13%), Positives = 84/301 (27%), Gaps = 65/301 (21%)
Query: 128 VLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
V+ PP P ++ T L C A + W + + ++
Sbjct: 2 VVTPPGPELVLNVSSTF--------VLTC-----SGSAPVVWERMSQEPPQEMAKAQD-- 46
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQVSVIGS 245
T S L LT + C ++ T + RL + V +
Sbjct: 47 -----GTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAE 101
Query: 246 NRLV---EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK 302
+ E T++ + C+ +P + + V + + D
Sbjct: 102 ELFIFLTEITEITIPCRVT-DP-QLVVTLHEKKGDVAL--PVPYDHQRGFSGIFEDRSYI 157
Query: 303 CE----------------------VQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWY 339
C+ + VSV +V +G ++ L C N + + W
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV-VNFEWT 216
Query: 340 INDQPVPAAASATELYLTNITRHQHDSIV------------KCEVHNDVGKSEDSETLDV 387
+ +L ++ H + C V V +D + +++
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Query: 388 T 388
T
Sbjct: 277 T 277
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 36/285 (12%), Positives = 68/285 (23%), Gaps = 60/285 (21%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-------LYLTNITRH----- 295
L + L C A W Q P + + L LTN+T
Sbjct: 12 LNVSSTFVLTCSGSA-----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 296 ----------QHDSIVKCEVQVSVIGSNRLV-----------EGTDVRLYCKAEANPSHM 334
+ D + + V L E T++ + C+ +P +
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DP-QL 124
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYG---P 391
+ V + + D C+ + +
Sbjct: 125 VVTLHEKKGDVAL--PVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSI 182
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN------------- 438
V +G + L+C V GN W + + P
Sbjct: 183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS 242
Query: 439 -LTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
L + + +G Y C + + + + + H
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
++ G +TL C VI V +WT G R + + +
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESG--RLVEPVTDFLLDMPYHIR 241
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I L+D Y C V+ + + + + V
Sbjct: 242 -SILHIPSAELEDSGTYTCNVTESV-ND---HQDEKAINITV 278
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 8e-24
Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 31/247 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+P V V + V L C+V P T + ++P+ + S + +G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSG 61
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
Y C+ + G + + ++ ++ G+ + C A+ V +
Sbjct: 62 EYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 511 YRGEEIGVGSSD--------------DY--SVHNDVGKSEDSETLDVTYGPR---FRARP 551
G+ + Y S + ++ V A
Sbjct: 119 RNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV 178
Query: 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLL-MTSDDLAG 604
+ + G V L C+ ++ S +L +D +G
Sbjct: 179 -TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRED-SG 236
Query: 605 RYYCKAS 611
Y+C+A+
Sbjct: 237 LYWCEAA 243
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 2e-23
Identities = 43/272 (15%), Positives = 77/272 (28%), Gaps = 37/272 (13%)
Query: 475 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHN---- 528
+ I +T + C +P W G S+ Y + +
Sbjct: 1 KAVITLQPPWVSV-FQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-STPSYRITSASVN 58
Query: 529 DVGK---------SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITW 578
D G+ D L++ G V G + L C + + +
Sbjct: 59 DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY 117
Query: 579 IHEDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATV-YLKGRPTIISH 635
K + NLT+L T+ G Y+C + G TV L P + +
Sbjct: 118 YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNAS 177
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
T + G+ + C + + + + S I
Sbjct: 178 VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS----------SEYQI 227
Query: 696 RESRHDHFGVYNCSVSNPYG-----SDSVEIM 722
+R + G+Y C + G S +E+
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 7e-21
Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 50/270 (18%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVL--QWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
++P + VTL C V+ G QW + A
Sbjct: 6 LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------------- 48
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
S I ++D Y+CQ +P I+ +L+ +G+ L
Sbjct: 49 -SYRITSASVNDSGEYRCQRGLSGRSDP-IQLEIHRGWLLLQVSSRVFTEGEPL------ 100
Query: 150 EIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
L C + K + + +G + S L + HN
Sbjct: 101 --ALRCHAWKDKLVYNVLYYRNGK-------------AFKFFHWN--SNLTILKTNISHN 143
Query: 209 TTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH-- 266
T+ C T + + + P ++ ++ L+EG V L C+ +
Sbjct: 144 GTYHCSGMGKHRYTSAGISVTVKELF-PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPG 202
Query: 267 --MKYRWYINDQPVPAAASATELYLTNITR 294
+ + +Y+ + + +++E + R
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARR 232
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-20
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 12/206 (5%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV-KC 370
+ + V L+C+ P +W++N S +T+ + + DS +C
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--STPSYRITSASVN--DSGEYRC 65
Query: 371 EVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDS 429
+ D L++ G V G + L C + + +
Sbjct: 66 QRGL--SGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLYYRNGK 122
Query: 430 D-KVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATV-YLKGRPTIISHRTQFG 486
K + NLT+L T+ G Y+C + G TV L P + + T
Sbjct: 123 AFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPL 182
Query: 487 IPGDTARVECSAFSIPPPEKVTWSYR 512
+ G+ + C + + +
Sbjct: 183 LEGNLVTLSCETKLLLQRPGLQLYFS 208
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-19
Identities = 41/252 (16%), Positives = 86/252 (34%), Gaps = 20/252 (7%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+P V V + V L C+V P T + ++P+ + S + +G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSG 61
Query: 605 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
Y C+ + G + + ++ ++ G+ + C A+ V +
Sbjct: 62 EYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
G+ + S L I ++ H G Y+CS + S I +
Sbjct: 119 RNGKAFKFFHWN--------------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 725 PQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQCKES 784
++ FP ++ V L+ +V + C+ K+ PG + + + + +
Sbjct: 165 VKELFPAPVLNASV---TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221
Query: 785 DNSSNISDIKLE 796
+ I + E
Sbjct: 222 SSEYQILTARRE 233
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 9e-18
Identities = 42/292 (14%), Positives = 91/292 (31%), Gaps = 65/292 (22%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
+ + P + Q +T+ L C + + W
Sbjct: 3 VITLQPPWVSVFQEETV--------TLHCEVLHLPGSSSTQW-----------------F 37
Query: 187 VDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK-VQVSVIG 244
++G T + + +T + + + CQ + + ++L + +QVS
Sbjct: 38 LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSG----RSDPIQLEIHRGWLLLQVS--- 90
Query: 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 304
S EG + L C A + +Y N + + L + H+ C
Sbjct: 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNIS-HNGTYHCS 149
Query: 305 V----------------------QVSVIGSNRLVEGTDVRLYCKAEANPSH----MKYRW 338
++ ++ L+EG V L C+ + + + +
Sbjct: 150 GMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF 209
Query: 339 YINDQPVPAAASATELYLTNITRHQHDS-IVKCEVHNDVGKSE-DSETLDVT 388
Y+ + + +++E + R DS + CE + G S L++
Sbjct: 210 YMGSKTLRGRNTSSEYQILTARR--EDSGLYWCEAATEDGNVLKRSPELELQ 259
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 6e-12
Identities = 26/217 (11%), Positives = 56/217 (25%), Gaps = 41/217 (18%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
++ + G + L C V + ++ A S
Sbjct: 85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNS------------- 131
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
+L I + + Y C G S ++TV P + T E
Sbjct: 132 ---NLTILKTNISHNGTYHCSG-MGKHRY---TSAGISVTVKELFPAPVLNASVTSPLLE 184
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
+ L C + + + + S + +
Sbjct: 185 GNLVTLSC-ETKLLLQRPGLQL--YFSFYMGSKTLRGRNTS-------SEYQILTARRED 234
Query: 208 NTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
+ + C+A +K +P++++ V+G
Sbjct: 235 SGLYWCEAATEDGNV---------LKRSPELELQVLG 262
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 9e-24
Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 26/207 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F E ++ S TL C+V TG ++W + + I
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIAD------GLKYRIQE 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG-D 141
+ G + L I V DD YQ +T G S A+L V VP P+ ++G
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQV-RATNQGGS---VSGTASLEVEVPAKIHLPKTLEGMG 112
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
++ + ++ +GKP ITW G + +N + S +
Sbjct: 113 AVHALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT-----SLVFPN 166
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARL 228
+ + A+N K L
Sbjct: 167 GVERKDAGFYVVCAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 5e-23
Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 22/195 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 593
P F+ ++ V + L+C V G+P P + W I D K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH-RTQFGIPGDTARV 648
+ +DD A Y +A+ G A V + + P + + G+ +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ P P +TW + I ++ Y V+ S + G Y
Sbjct: 125 KIPFSGKPDPV-ITWQKGQDLID--NNGHYQVIVT---RSFTSLVFPNGVERKDAGFYVV 178
Query: 709 SVSNPYGSDSVEIML 723
N +G D + L
Sbjct: 179 CAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 8e-18
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 25/168 (14%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ--------HD 365
+ ++ L CK +P +WY + + A + HQ D
Sbjct: 15 NVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 366 S-IVKCEVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
+ + + N G + +L+V + P+ +V RG V++ G P
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 420 PEITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKAS 457
P ITW I + V + + T L+ + + AG Y A
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-16
Identities = 39/236 (16%), Positives = 67/236 (28%), Gaps = 74/236 (31%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P F+ ++ V + L+C V G+P P + W +++ + +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYH- 62
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
L II+ T D + A
Sbjct: 63 --------------------QL-----IIASVT----DDDATVYQVRA------------ 81
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDV-----TYGPRFRARPYSVQVDRGAGVNLL 565
N G + +L+V + P+ +V RG V++
Sbjct: 82 ----------------TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 566 CDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDL----AGRYYCKAS 611
G P P ITW I + V + + T L+ + + AG Y A
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 11/150 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
P + L L C G P + W G + ++ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV--KYAPKVQVSVIGSNRLV 249
L++ + T + +A N A L++ V K + +G+ +
Sbjct: 62 ----HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
G V + P W +
Sbjct: 118 RGEVVSIKIPFSGKPDP-VITWQKGQDLID 146
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-09
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P R A + C P P V W +G+EI + Y + E G
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEI-IADGLKYRIQEFK---G 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDS----VEIMLKPQKSFP 730
LII D VY +N GS S +E+ + + P
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 45/197 (22%)
Query: 234 YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
AP + + + ++ L CK +P +WY + + A +
Sbjct: 3 MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 294 RHQ--------HDS------------IVKCEVQVSVIGSNRL--------------VEGT 319
HQ D+ V + V ++ + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITR-HQHDS-IVKCE 371
V + P W + + + L + D+
Sbjct: 121 VVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 372 VHNDVGKSEDSETLDVT 388
N G + + LDV
Sbjct: 180 AKNRFGIDQKTVELDVA 196
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 2e-23
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 31/215 (14%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGPHRNLSGFDRYAMIGSD-- 85
GS +T+ C+ + ++ W +D + + G + + S
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVH--GEEDLKVQHSSYR 65
Query: 86 ----------EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
G+ +L+I V L D Y+C +S G + + +TV V
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-------GADYKRITVKVNAPYN 118
Query: 136 RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
+I Q + E EL C A G P AE+ W V+S T + + + V
Sbjct: 119 KINQRILVVDPVTSEHELTC-QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230
STL + N F C + A L +
Sbjct: 178 STLRINT---TTNEIFYCTFRRLDPEENHTAELVI 209
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-09
Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 45/209 (21%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPE-----ITWIHED----------------------- 582
V+ G+ + + C + + W ED
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67
Query: 583 ----SDKVVGNSPNLTL--LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 636
D++ + L + + D AG Y C S G TV + I+ R
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQD--AGVYRCMISYGGADY--KRITVKVNAPYNKINQR 123
Query: 637 TQFGIP-GDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
P + C A P E V W S + + ++ S E+ L + STL
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAE-VIWTSSDHQVLSGKTTTTNSKREEKLF-NVTSTLR 181
Query: 695 IRESRHDHFGVYNCSVSNPYGSDSVEIML 723
I + + ++ C+ ++ L
Sbjct: 182 INTTTN---EIFYCTFRRLDPEENHTAEL 207
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 9e-08
Identities = 33/217 (15%), Positives = 58/217 (26%), Gaps = 50/217 (23%)
Query: 308 SVIGSNRLVE---GTDVRLYCKA--EANPSHMKYRWY--INDQPVPAAASATE------- 353
+V L G+++ + CK E Y + D+ + E
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 354 -------------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR 394
L +T++ Q + +C + G T+ V
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVK-LQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120
Query: 395 ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL------ 448
+ V + L C +G P E+ W D + G + T + L
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT-TTTNSKREEKLFNVTST 179
Query: 449 -------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
+YC PE A + + P
Sbjct: 180 LRINTTTNEIFYCTFR-RLDPEENHTAELVIPELPLA 215
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 15/118 (12%)
Query: 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV 587
+ G T+ V + V + L C +G P E+ W D +
Sbjct: 100 SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
Query: 588 GNSPNLTLLMTSDDL-------------AGRYYCKASVMGFPEVGAEATVYLKGRPTI 632
G + T + L +YC PE A + + P
Sbjct: 160 GKT-TTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR-RLDPEENHTAELVIPELPLA 215
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 41/207 (19%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE-----ITWIDGTGTVMS---- 177
TV VP D + G + +EC + + + W ++
Sbjct: 3 TVTVPKDLYVVEYGSN--------MTIEC-KFPVEKQLDLAALIVYWEMEDKNIIQFVHG 53
Query: 178 NVRVTEEASVDGRRTTV--------KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + S +R + + L +T K + C YK +K
Sbjct: 54 EEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVK 112
Query: 230 LLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS------ 283
+ Y Q ++ ++ L C+AE P + W +D V + +
Sbjct: 113 VNAPYNKINQRILVVDP---VTSEHELTCQAEGYPKA-EVIWTSSDHQVLSGKTTTTNSK 168
Query: 284 -ATELYLTNIT---RHQHDSIVKCEVQ 306
+L+ T + I C +
Sbjct: 169 REEKLFNVTSTLRINTTTNEIFYCTFR 195
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 2e-23
Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 23/202 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------------SDKVV 587
VQV + L C G +P + W +D+V
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 588 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 644
+S +T + G Y C S + E +++L P+ + + G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSE-EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP--LKEGIKSTLIIRESRHDH 702
A + CS PP + +W G + + + + LI
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C N YG+
Sbjct: 181 SGEYYCQAQNGYGTAMRSEAAH 202
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 6e-22
Identities = 38/211 (18%), Positives = 61/211 (28%), Gaps = 13/211 (6%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
D + L C +G ++W + +
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTY---SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ V D+ Y C VS G+ LTVLVPP P I
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEG-GQ-NYGEVSIHLTVLVPPSKPTISV--PSS 115
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT--TVKSTLVLTP 202
T L C +G PP+E +W ++++ A ++ T L+ P
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + CQAQN + +
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 5e-16
Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITW--IDGTGTVMSNVRVTEE 184
+V ++ + ++ I+L C + +G + W + G+ T +
Sbjct: 3 SVYTAQSDVQVPENES--------IKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQIT 53
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
A R T S + + N +TC + Y + L V P +
Sbjct: 54 APYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV- 112
Query: 245 SNRLVEGTDVRLYCKA-EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS 299
+ + G L C + +P +Y W+ + + A + N +
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK 167
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 2e-15
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------------SDKVV 433
VQV + L C G +P + W +D+V
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 434 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 490
+S +T + G Y C S + E +++L P+ + + G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSE-EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538
A + CS PP + +W G + + + + D ++
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 3e-12
Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 39/201 (19%)
Query: 316 VEGTDVRLYCKAEANP-----------SHMKYRWYINDQPVPAAASAT----ELYLTNIT 360
E ++L C S Y + P A T + +++T
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 361 RHQHDSIVKCEVHNDVGK--SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGN 417
R + + C V + G+ E S L V P V G L C DG+
Sbjct: 74 R-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGS 132
Query: 418 PAPEITWIHED-----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
P E +W + S + S +L + +G YYC+A
Sbjct: 133 PPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 460 GFPEVGAEATVYLKGRPTIIS 480
G ++ +
Sbjct: 193 G--TAMRSEAAHMDAVELNVG 211
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 24/192 (12%), Positives = 51/192 (26%), Gaps = 53/192 (27%)
Query: 249 VEGTDVRLYCKAEANP-----------SHMKYRWYINDQPVPAAASAT----ELYLTNIT 293
E ++L C S Y + P A T + +++T
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 294 RHQH------------DSIVKCEVQVSVIG---------SNRLVEGTDVRLYCKA-EANP 331
R + + + + ++V+ + + G L C + +P
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133
Query: 332 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDS-----IVK----------CEVHNDV 376
+Y W+ + + A + N + C+ N
Sbjct: 134 P-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 377 GKSEDSETLDVT 388
G + SE +
Sbjct: 193 GTAMRSEAAHMD 204
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 48/364 (13%), Positives = 99/364 (27%), Gaps = 90/364 (24%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P + +V D +N CD P E +W + +SP L + S
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDY--VSTEDSPRLE--VESKG--- 55
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
+ M F ++G + D C
Sbjct: 56 ----NKTKMTFKDLGMD----------------------DLGIYSCDVTD---------- 79
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD- 569
G + Y + + K + + + + +V++ V +
Sbjct: 80 ------TDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 570 GNPAPEITWIHEDSD---------KVVGNSPNLTLLM---TSDDLAGRYYCKAS------ 611
+ ++ +I + + + N+ + + M +D G Y +
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED-EGTYTFQLQDGKATN 192
Query: 612 -------VMGFPEVGAEATVYL-----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
F ++ EA K P + + + ++C +I
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Query: 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
+ W EI + + + TL+I E G+Y + + G D
Sbjct: 253 HIVWYKDEREIS--VDEKHDFKDG------ICTLLITEFSKKDAGIYEVILKDDRGKDKS 304
Query: 720 EIML 723
+ L
Sbjct: 305 RLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 9e-20
Identities = 31/274 (11%), Positives = 72/274 (26%), Gaps = 35/274 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ + C + W+KD + R + +
Sbjct: 5 FTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDY------VSTEDSPRLEV--ESKGN 56
Query: 89 DYSLEIYPVMLDDDARYQCQVS------TGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+ + +DD Y C V+ + L + R L+ +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 143 LYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
+ E ++ + A++ +I + + + + R T + +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEK-----EIFEGPKYKMHIDRNTGIIEMFME 171
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG---------------SN 246
++ T+T Q Q+ + L V + + S
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280
+ +V L CK WY +++ +
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 2e-17
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 26/203 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKV----VGNSPNLTL 595
P + +V D +N CD P E +W EDS ++ GN +T
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTF 62
Query: 596 LMTSDDLAGRYYCKA-----SVMGFPEVGAEATVYLKGRPTIISHRTQFGIP-------G 643
D G Y C + E L
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 644 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
R A + KV + + +EI Y + D + + + + + +
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIF--EGPKYKMHID--RNTGIIEMFMEKLQDEDE 178
Query: 704 GVYNCSVSNPYGSDSVEIMLKPQ 726
G Y + + ++ ++L
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGD 201
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 4e-15
Identities = 26/267 (9%), Positives = 70/267 (26%), Gaps = 57/267 (21%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDSIV 368
+ C + P ++ W + + + T++ ++ I
Sbjct: 17 GVISLNFECD-KMTPK-SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGM-DDLGIY 73
Query: 369 KCEVHNDVGKSEDSETLDVTYG------------PRFRARPYSVQVDRGAGVNLLCDVD- 415
C+V + G + + +V++ V +
Sbjct: 74 SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 416 GNPAPEITWIHEDSD---------KVVGNSPNLTLLM---TSDDLAGRYYCKAS------ 457
+ ++ +I + + + N+ + + M +D G Y +
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED-EGTYTFQLQDGKATN 192
Query: 458 -------VMGFPEVGAEATVYL-----KGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
F ++ EA K P + + + ++C +I
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Query: 506 KVTWSYRGEEIGVGSSDDYSVHNDVGK 532
+ W EI + + + +
Sbjct: 253 HIVWYKDEREI--SVDEKHDFKDGICT 277
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 30/219 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ +V + + + ++ + + +Y M
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNE------KEIFEGPKYKMHIDRN 162
Query: 87 EGDYSLEIYPVMLDDDARYQCQVS------------TGILGEPAIRSRFATLTVLVPPDP 134
G + + + +D+ Y Q+ G + + + +
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
P V+ + T + + L+C AN K I W + + + + +
Sbjct: 223 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI------- 275
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
TL++T + + ++ + +RLKL+ +
Sbjct: 276 -CTLLITEFSKKDAGIYEVILKDDRGKD--KSRLKLVDE 311
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 47/365 (12%), Positives = 92/365 (25%), Gaps = 112/365 (30%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTG-TVMSNVRVTEEASVDGR 190
P + + + EC P +E +W D + V + +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN---- 56
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
K+ + ++C +T +A L+ + K +++ ++
Sbjct: 57 ----KTKMTFKDLGMDDLGIYSCDVTDTDG----IASSYLIDEEELKRLLALSHEHKFP- 107
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVI 310
VP VK E+ V +
Sbjct: 108 --------------------------TVP---------------------VKSELAVEI- 119
Query: 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP----------AAASATELYLTNIT 360
+E VR + +AE + K + N++ + E+++ +
Sbjct: 120 -----LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174
Query: 361 RHQHDS-IVKCEVHNDVGKSEDSETLDV-------------------TYGPRFRARPYSV 400
D ++ + + + L GP F S
Sbjct: 175 --DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSW 231
Query: 401 QVDRGAGVNLLCDVDGNPAP-EITWIHED-----SDK--VVGNSPNLTLLMTSDDLAGRY 452
+V V L C V I W ++ +K L + S AG Y
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 291
Query: 453 YCKAS 457
Sbjct: 292 EVILK 296
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 15/129 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ EC P E +WS S V G K+ + ++ D
Sbjct: 18 VISLNFECDK-MTPKSE-FSWSKDYVSTE--DSPRLEVESK----GNKTKMTFKDLGMDD 69
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVI-------GCVVILVALTMVVILC 755
G+Y+C V++ G S ++ + + L L V ++ V
Sbjct: 70 LGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWM 129
Query: 756 QRKVKKPPP 764
Q +
Sbjct: 130 QAEKLSGNA 138
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 3e-23
Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 27/208 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLLM 597
PRF P G + +C G+P P+I W + + + + + ++L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 598 -----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RTQFGIPGDT 645
T D Y C AS +G V TV + G PTI + + T
Sbjct: 67 IQPLRTPRD-EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
A + C+A P PE +TW + +++ G L I +S G
Sbjct: 126 ATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESIG---ALQIEQSEESDQGK 181
Query: 706 YNCSVSNPYGSD---SVEIMLKPQKSFP 730
Y C +N G+ + ++ K
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKHHH 209
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 2e-19
Identities = 51/202 (25%), Positives = 70/202 (34%), Gaps = 30/202 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F P DQT V G + C+ TG + W K + R+ +I
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQA---TGDPRPKIVWNKKGKKVSN-------QRFEVIEF 57
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQ 139
D+ L I P+ D Y+C S +GE S LTVL P I
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNN-VGE---ISVSTRLTVLREDQIPRGFPTIDM 113
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKST 197
G L R + C +A+G P EITW D SN +
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSES----IGA 168
Query: 198 LVLTPKKEHHNTTFTCQAQNTA 219
L + +E + C A N+A
Sbjct: 169 LQIEQSEESDQGKYECVATNSA 190
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 9e-18
Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 33/196 (16%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS 366
V G C+A +P K W + V S + L + + + ++
Sbjct: 19 VSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA 77
Query: 367 IVKCEVHNDVGKSEDSETLDVTY-------GPRFRARPYSVQVDRGAGVNLLCDVDGNPA 419
I +C N+VG+ S L V P P V+R +LC GNP
Sbjct: 78 IYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 420 PEITWIHEDSDKVVGNSPNLTLLMTSDDL-------------AGRYYCKAS-VMGFPEVG 465
PEITW D V ++ N + + G+Y C A+ G
Sbjct: 138 PEITWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT-RYS 195
Query: 466 AEATVYLKGRPTIISH 481
A A +Y++G H
Sbjct: 196 APANLYVRGTKHHHHH 211
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 4e-16
Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-------DSDKVVGNSPNLTLLM 443
PRF P G + +C G+P P+I W + + + + + ++L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 444 -----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLK-----GRPTIISH-RTQFGIPGDT 491
T D Y C AS +G V TV + G PTI + + T
Sbjct: 67 IQPLRTPRD-EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 492 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
A + C+A P PE +TW + +++
Sbjct: 126 ATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESI 166
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 4e-13
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
M PQ + T+ C +G + W KD + + +
Sbjct: 110 TIDMGPQLKVVERTRTATMLCAA---SGNPDPEITWFKDFLPVDTSN-----NNGRIKQL 161
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
E +L+I D +Y+C + G S A L V
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATN-SAGT--RYSAPANLYVRGTKHHH 209
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 28/159 (17%), Positives = 41/159 (25%), Gaps = 16/159 (10%)
Query: 127 TVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEE 184
T PP R + C A G P +I W G V E
Sbjct: 2 TGETPP---RFTRTPVDQTGVSGGVASFIC-QATGDPRPKIVWNKKGKKVSNQRFEVIEF 57
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
G ++ + + C A N RL +L + I
Sbjct: 58 DDGSGSVLRIQPL-----RTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112
Query: 245 SN----RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ + C A NP + W+ + PV
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVD 150
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 55/200 (27%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS 299
V G C+A +P K W + V S + L + + + ++
Sbjct: 19 VSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA 77
Query: 300 IVKCE-----------VQVSVIGSNRL----------------VEGTDVRLYCKAEANPS 332
I +C +++V+ +++ + C A NP
Sbjct: 78 IYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK----------CEVHNDVGKSEDS 382
+ W+ + PV + + + I + C N G +
Sbjct: 138 -PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Query: 383 E-TLDVTYGPRFRARPYSVQ 401
L V R +
Sbjct: 197 PANLYV------RGTKHHHH 210
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 97.4 bits (242), Expect = 4e-23
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 14/188 (7%)
Query: 38 TAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRN--LSGFDRYAMIGS-DEEGD 89
T V TL C + W K+ + + ++ + Y D +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
S+ I + D+ Y+C V + R A +T+ V D P D T +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKY-EKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN- 122
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+ C ++ G P ++W++ + + + V S L N
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETE-LYAVSSKLDFNM---TTNH 178
Query: 210 TFTCQAQN 217
+F C +
Sbjct: 179 SFMCLIKY 186
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 592 NLTLLM---TSDDLAGRYYCKASVMG----FPEVGAEATVYLKGRPTIISHRTQFGIPGD 644
NL++++ D G Y C E AE T+ +K S +
Sbjct: 64 NLSIVILALRPSD-EGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
R+ CS P ++W GEE+ ++ E L + S L + +
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA-VSSKLDFNMTTN---H 178
Query: 705 VYNCSVSNPYGSDSVE 720
+ C + + +
Sbjct: 179 SFMCLIKYGHLRVNQT 194
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 16/189 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLM-- 597
P + + + VD G V L C V+G + WI + + G P+L L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 598 -TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 655
TSD C A +G AE +V + S + + + S
Sbjct: 219 VTSDLNRKNVTCWAENDVGR----AEVSVQVNVSFP-ASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK-STLIIRESRHDHFGVYNCSVSNPY 714
P P + W + G + S LE E ++ L + + H + G Y +NP+
Sbjct: 274 PAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 715 GSDSVEIML 723
G S IM
Sbjct: 333 GQASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 1e-13
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLM-- 443
P + + + VD G V L C V+G + WI + + G P+L L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 444 -TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 501
TSD C A +G AE +V + S + + + S
Sbjct: 219 VTSDLNRKNVTCWAENDVGR----AEVSVQVNVSFP-ASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 502 PPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE-TLDVT 542
P P + W + G + S L +
Sbjct: 274 PAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 1e-12
Identities = 41/233 (17%), Positives = 69/233 (29%), Gaps = 37/233 (15%)
Query: 266 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLV-EGTDVRLY 324
+++ ++ + + + V N V G DV L
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179
Query: 325 CKAEANPS-HMKYRWYINDQPVPAAAS------ATELYLTNITRHQHDSIVKCEVHNDVG 377
C+ E W + + A + L L N+T + V C NDVG
Sbjct: 180 CQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237
Query: 378 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--------- 428
++E S ++V+ F A + VDG PAP + W+
Sbjct: 238 RAEVSVQVNVS----FPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI 293
Query: 429 -----SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYL 472
+ L + T + G Y A+ G A A++
Sbjct: 294 FTEFLEPAANETVRHGCLRLNQPTHVN-NGNYTLLAANPFGQ----ASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 30/212 (14%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + + VG V L C+V G W + ++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQV---EGRGLEQAGWILTELEQSAT----------VMK 205
Query: 84 SDEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
S L + V D + C +G A ++V V P VQ T
Sbjct: 206 SGGLPSLGLTLANVTSDLNRKNVTCWAE-NDVG-------RAEVSVQVNVSFPASVQLHT 257
Query: 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK-STLVLT 201
+ S +G+P + W+ + + E TV+ L L
Sbjct: 258 AVEMH--HWCIPF-SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+N +T A N + +
Sbjct: 315 QPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-08
Identities = 9/97 (9%), Positives = 18/97 (18%), Gaps = 8/97 (8%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
+ GD + C + W E +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSL------ 212
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+ + + C N G V + +
Sbjct: 213 -GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 248
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 6e-06
Identities = 24/169 (14%), Positives = 43/169 (25%), Gaps = 18/169 (10%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P VQ ++ L C G+ + WI A+V
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQ--------SATVMKSG 207
Query: 192 TTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
L L N TC A+N R ++ + + ++ +V +
Sbjct: 208 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH---- 263
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS 299
+ + P RW N + + +L
Sbjct: 264 ---WCIPFSVDGQP-APSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 308
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-05
Identities = 31/183 (16%), Positives = 48/183 (26%), Gaps = 42/183 (22%)
Query: 247 RLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAAS------ATELYLTNITRHQHDS 299
+ G DV L C+ E W + + A + L L N+T +
Sbjct: 169 SVDVGDDVLLRCQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRK 226
Query: 300 IVKC-------------EVQVSVIGSNRLVEGT---DVRLYCKAEANPSHMKYRWYINDQ 343
V C +V VS S +L + + P RW N
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP-APSLRWLFNGS 285
Query: 344 PVPAAASATE---------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ + L L T H ++ N G++ S
Sbjct: 286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPT-HVNNGNYTLLAANPFGQASASIMAAFM 344
Query: 389 YGP 391
P
Sbjct: 345 DNP 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 5e-04
Identities = 15/105 (14%), Positives = 24/105 (22%), Gaps = 6/105 (5%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F Q TAV +P V L+W + L +
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L + ++ Y G+ S + P
Sbjct: 308 HG-CLRLNQPTHVNNGNYTLLA-ANPFGQ---ASASIMAAFMDNP 347
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 1e-22
Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 31/189 (16%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
G + P + V +G V L C V+G P+I W+ + VV N L + ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQNLDQLYIPVSEQHWI 59
Query: 603 ------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 649
AGRY+C+ G E+ + ++G P + P ++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C A P P + W +IG G + SVL +++C
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIG-GPAPSPSVLNVTGVT-------------QS-TMFSCE 164
Query: 710 VSNPYGSDS 718
N G S
Sbjct: 165 AHNLKGLAS 173
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 8e-20
Identities = 48/197 (24%), Positives = 63/197 (31%), Gaps = 37/197 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
K P T G V L C V G+ +QW KD + D+ + S
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSV---EGMEEPDIQWVKDGAVVQNL------DQLYIPVS 54
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTL 143
++ L + V D RY CQV G S+ LTV P L
Sbjct: 55 EQHWIGFLSLKSVERSDAGRYWCQVEDGG-ETEI--SQPVWLTVEG---VPFFTVEPKDL 108
Query: 144 YTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ +L C A G P P I W GT + S VL
Sbjct: 109 AVPPNAPFQLSC-EAVGPPEPVTIVWWRGTTKI---------------GGPAPSPSVLNV 152
Query: 203 KKEHHNTTFTCQAQNTA 219
+T F+C+A N
Sbjct: 153 TGVTQSTMFSCEAHNLK 169
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-19
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
G + P + V +G V L C V+G P+I W+ + VV N L + ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQNLDQLYIPVSEQHWI 59
Query: 449 ------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 495
AGRY+C+ G E+ + ++G P + P ++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534
C A P P + W +IG G + SV N G ++
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIG-GPAPSPSVLNVTGVTQ 157
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 134 PPRIVQGDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
+++ T ++ + ++L C S G +I W+ DG + V+ ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNC-SVEGMEEPDIQWVKDG-----AVVQNLDQLYIPVSE 55
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG 251
L L + + CQ ++ + + L V+ P V +
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTV-EPKDLAVPPN 113
Query: 252 TDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
+L C+A P + W+ + A + L
Sbjct: 114 APFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-SVLNVTG 154
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-14
Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 16/155 (10%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT----------ELYLTNITRHQHD 365
+G V+L C E +W + V L L ++ R D
Sbjct: 15 SQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS--D 71
Query: 366 SIV-KCEVHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EI 422
+ C+V + L V P F P + V A L C+ G P P I
Sbjct: 72 AGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI 131
Query: 423 TWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
W + L +T + + C+A
Sbjct: 132 VWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAH 166
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 30/165 (18%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG----------------- 517
++ G ++ CS + P+ + W G +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 518 -----VGSSD--DYS--VHNDVGKSEDSE-TLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
V SD Y V + L V P F P + V A L C+
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 568 VDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
G P P I W + L +T + + C+A
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAH 166
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 44/204 (21%), Positives = 66/204 (32%), Gaps = 36/204 (17%)
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 596
ET + P +P + V G + C G+P P I W + KV G T+L
Sbjct: 1 ET--GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVL 57
Query: 597 MTSDDL-------------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIP 642
+ Y C A +G V A+AT+ + +
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQG 116
Query: 643 --------GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
G T + C A P P + W ++ S+ L+D L
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKV--DMSNPRYSLKD-------GFLQ 166
Query: 695 IRESRHDHFGVYNCSVSNPYGSDS 718
I SR + G Y C N G++
Sbjct: 167 IENSREEDQGKYECVAENSMGTEH 190
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-19
Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 35/217 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +PQ+Q VG + C G + W K+ + +SG +
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAA---RGDPPPSIVWRKNG------KKVSGTQSRYTVLE 58
Query: 85 DEEGDYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTVLV----PPDPPRIVQ 139
G L I PV D Y+C G +G+ S ATLT+ P P I Q
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENG-VGD--AVSADATLTIYEGDKTPAGFPVITQ 115
Query: 140 GDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-T 197
G + + C A G P I WI + + + R ++K
Sbjct: 116 GPGTRVIEVGHTVLMTC-KAIGNPTPNIYWI----------KNQTKVDMSNPRYSLKDGF 164
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVK 233
L + +E + C A+N+ + K L + V+
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 2e-15
Identities = 49/260 (18%), Positives = 77/260 (29%), Gaps = 60/260 (23%)
Query: 383 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL 442
ET + P +P + V G + C G+P P I W + KV G T+L
Sbjct: 1 ET--GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVL 57
Query: 443 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502
++ I D A EC A +
Sbjct: 58 EQPGGIS-----------------------------ILRIEPVRAGRDDAPYECVAEN-- 86
Query: 503 PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562
GVG + + + + P P + ++ G V
Sbjct: 87 --------------GVGDAVSADATLTIYEGDK----TPAGFPVITQGPGTRVIEVGHTV 128
Query: 563 NLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VMGF 615
+ C GNP P I W + + + L + + ++ G+Y C A MG
Sbjct: 129 LMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188
Query: 616 PEVGAEATVYLKGRPTIISH 635
A +Y+K R H
Sbjct: 189 EHSKA-TNLYVKVRRVGTKH 207
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 21/112 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
P + VG V + C+ G + W K+ + RY++
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKA---IGNPTPNIYWIKNQTKVDMSN-----PRYSL--- 160
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
D L+I +D +Y+C +G S+ L V V +
Sbjct: 161 ---KDGFLQIENSREEDQGKYECVAEN-SMGT--EHSKATNLYVKVRRVGTK 206
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 8e-10
Identities = 35/154 (22%), Positives = 48/154 (31%), Gaps = 15/154 (9%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
PP I++ C +A G PP I W +G + R T G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI- 63
Query: 192 TTVKSTLVLTPKKEHHNT-TFTCQAQNTA-DRTYKVARLKLLVKYAPKVQVSVIGSN--- 246
S L + P + + + C A+N D A L + VI
Sbjct: 64 ----SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 247 -RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+ G V + CKA NP W N V
Sbjct: 120 RVIEVGHTVLMTCKAIGNP-TPNIYWIKNQTKVD 152
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/211 (14%), Positives = 54/211 (25%), Gaps = 48/211 (22%)
Query: 232 VKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASA 284
+ P++ + + + G YC A +P W N + V
Sbjct: 3 GAHPPEI-IRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 285 TELYLTNIT--RHQHDS-------------IVKCEVQVSVIGSNRL-------------- 315
+ + I R D V + +++ ++
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 316 --VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIV 368
G V + CKA NP W N V + L + N +
Sbjct: 121 VIEVGHTVLMTCKAIGNP-TPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKY 178
Query: 369 KCEVHNDVGKSEDSET-LDVTYGPRFRARPY 398
+C N +G T L V +
Sbjct: 179 ECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 3e-21
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 12/201 (5%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ + V L C +G ++W D + +
Sbjct: 11 EPEVRIPENNPVKLSCAY---SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP 67
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ V +D Y C VS + L VLVPP P + T
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEG--GNSYGEVKVKLIVLVPPSKPTVNI--PSSATIGN 123
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK-STLVLTPKKEHHN 208
L C +G PP+E TW + +N + T S LV P
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 209 TTFTCQAQNTADRTYKVARLK 229
++C+A+N ++
Sbjct: 184 GEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 6e-21
Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 22/201 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
+ V++ V L C G +P + W + D N + + +D
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 603 ---------------AGRYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIP-GD 644
G Y C S E V L P+ + G+
Sbjct: 65 FLPTGITFKSVTREDTGTYTCMVSE-EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
A + CS PP + TW G + S + L+
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 704 GVYNCSVSNPYGSDSVEIMLK 724
G Y+C N YG+ ++
Sbjct: 184 GEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITW--IDGTGTVMSNVRV 181
++TV RI + + ++L C + +G + W G T +
Sbjct: 3 GSVTVHSSEPEVRIPENNP--------VKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNN 53
Query: 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
AS + R T + + + T+TC +Y ++KL+V P
Sbjct: 54 KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV 113
Query: 242 VIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
I + G L C + +Y W+ + +P
Sbjct: 114 NI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP 150
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-12
Identities = 34/191 (17%), Positives = 48/191 (25%), Gaps = 38/191 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------------SATELYLTNI 359
E V+L C S + W + T + ++
Sbjct: 17 PENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 360 TRHQHDSIVKCEVHNDVGKSEDSE--TLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DG 416
TR + C V + G S L V P G L C DG
Sbjct: 76 TR-EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG 134
Query: 417 NPAPEITWIHED----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS-VM 459
+P E TW + S + + L S G Y C+A
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 194
Query: 460 GFPEVGAEATV 470
G P +
Sbjct: 195 GTPMTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 4e-12
Identities = 39/254 (15%), Positives = 56/254 (22%), Gaps = 73/254 (28%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ V++ V L C G +P + W + D N + +
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKI---TASYED 61
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
R + + F V E DT C
Sbjct: 62 RVTFLPTGITFKSVTRE----------------------DTGTYTCMV------------ 87
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSE--TLDVTYGPRFRARPYSVQVDRGAGVNLLCDV 568
+ G S L V P G L C
Sbjct: 88 ----------------SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 569 -DGNPAPEITWIHED----------------SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
DG+P E TW + S + + L S G Y C+A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 612 -VMGFPEVGAEATV 624
G P +
Sbjct: 192 NGYGTPMTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGP-HRNLSGFDRYAMIG 83
+A +G+R L C D G W KD + ++ F + +
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQD--GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ G L P+ D Y C+ G G P + +
Sbjct: 167 NPTTG--ELVFDPLSASDTGEYSCEARNG-YGTP---MTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 57/207 (27%)
Query: 236 PKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------ 282
V V + E V+L C S + W +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 283 ----SATELYLTNITRH----------------QHDSIVKCEVQV-----SVIGSNRLVE 317
T + ++TR + VK V V +V +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------------ELYLTNITRH 362
G L C + +Y W+ + +P +T EL ++
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA- 180
Query: 363 QHDS-IVKCEVHNDVGKSEDSETLDVT 388
D+ CE N G S + +
Sbjct: 181 -SDTGEYSCEARNGYGTPMTSNAVRME 206
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 94.0 bits (233), Expect = 8e-21
Identities = 43/309 (13%), Positives = 80/309 (25%), Gaps = 70/309 (22%)
Query: 483 TQFGIPGDTARVECSAFS-------IPPPEKVTWSYRGEEIGVGSSDDYSVH-------- 527
+F + G+ + C P +TW V ++ +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQDGALWL 85
Query: 528 ----------------NDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLC--- 566
N + S L V Y + L+C
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDL 145
Query: 567 --DVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMG 614
+I W + +D++K + LL+ +D AG Y C +
Sbjct: 146 SEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED-AGYYRCVLTFAHE 204
Query: 615 FPEVGAEATVYLKGRPTIISHRTQFGIP--------GDTARVECSAFS---IPPPEKVTW 663
+ ++ L+ + P G + C F P + W
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLW 263
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKE-------GIKSTLIIRESRHDHFGV-YNCSVSNPYG 715
+ + V E P +E I+ LI + + + C V N
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323
Query: 716 SDSVEIMLK 724
++ +K
Sbjct: 324 FQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 28/215 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
Q + + L C + + +QW KD L + +
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS------LLLDKDNEKFLS---VR 177
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG-DTLY 144
G L ++ V L+D Y+C ++ G+ +R L + + P I+ T+
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237
Query: 145 TTEDREIELEC--ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR-------TTVK 195
+ + + C G P + W T + + + R+ ++
Sbjct: 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297
Query: 196 STLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLK 229
L+ P +E + F C NT +K
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 7e-17
Identities = 41/272 (15%), Positives = 68/272 (25%), Gaps = 42/272 (15%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV--------LQWTKDDFALGPHRNLSGFDRYAM 81
+ + + G V L C + L W K+D A + G + M
Sbjct: 21 RGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSAR----TVPGEEETRM 76
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
D +L + P + +D Y C L V D
Sbjct: 77 WAQD----GALWLLPALQEDSGTYVCTTRNAS-YC---DKMSIELRVFENTDAFLPFISY 128
Query: 142 TLYTTEDREIELECIS----ANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS 196
T L C K +I W D N + +
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--------TT 180
Query: 197 TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL--KLLVKYAPKVQVSVI----GSNRLVE 250
L++ + C + +L +K + + VI +
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASL 240
Query: 251 GTDVRLYCKAEA---NPSHMKYRWYINDQPVP 279
G+ + + CK P W ND +
Sbjct: 241 GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 42/256 (16%), Positives = 68/256 (26%), Gaps = 49/256 (19%)
Query: 316 VEGTDVRLYCK-------AEANPSHMKYRWYINDQPVPAAASATE--------LYLTNIT 360
+EG V L C A +P + W+ ND L+L
Sbjct: 31 LEGEPVALRCPQVPYWLWASVSPR-INLTWHKNDSARTVPGEEETRMWAQDGALWLLPAL 89
Query: 361 RHQHDSIV-KCEVHNDVGKSEDSETLDVTYGPRFRA--RPYSVQVDRGAGVNLLC----- 412
Q DS C N + S L V Y + L+C
Sbjct: 90 --QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 413 DVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFP 462
+I W + +D++K + LL+ +D AG Y C +
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED-AGYYRCVLTFAHEGQ 206
Query: 463 EVGAEATVYLKGRPTIISHRTQFGIP--------GDTARVECSAF---SIPPPEKVTWSY 511
+ ++ L+ + P G + C F P + W
Sbjct: 207 QYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLWWT 265
Query: 512 RGEEIGVGSSDDYSVH 527
+ + V
Sbjct: 266 ANDTHIESAYPGGRVT 281
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 3e-13
Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 29/199 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLC-------DVDGNPAPEITWIHEDSDKVVGNSPNLTLLM 597
G V L C +P +TW DS + V +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 598 TSDDL---------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTA 646
L +G Y C ++ E V+ + Q +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 647 RVECSAFSIP----PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ C S K+ W + ++ + + L++ + +
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLD--KDNEKFLSVRG-----TTHLLVHDVALED 191
Query: 703 FGVYNCSVSNPYGSDSVEI 721
G Y C ++ + I
Sbjct: 192 AGYYRCVLTFAHEGQQYNI 210
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 7e-13
Identities = 38/318 (11%), Positives = 70/318 (22%), Gaps = 85/318 (26%)
Query: 391 PRFRARPYSVQVDRGAGVNLLC-------DVDGNPAPEITWIHEDSDKVVGNSPNLTLLM 443
G V L C +P +TW DS + V +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 444 TSDDL---------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTA 492
L +G Y C ++ E V+ + Q +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 493 RVECSAFSIP----PPEKVTWSYRGEEI-------------------GVGSSD--DYS-- 525
+ C S K+ W + V D Y
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 526 VHNDVGKSEDSETLDVT---------YGPRFRARPYSVQVDRGAGVNLLCDV---DGNPA 573
+ + + T + P + ++ G+ + + C V G P
Sbjct: 199 LTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL 258
Query: 574 PEITWIHEDSDKVVGNSPNLTLL-----------------------MTSDDLAGRYYCKA 610
+ W + + P + +T +DL + C
Sbjct: 259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV 318
Query: 611 SVMGFPEVG-AEATVYLK 627
+ +K
Sbjct: 319 HN----TLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 5e-07
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 637 TQFGIPGDTARVECSAFS-------IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
+F + G+ + C P +TW V ++ +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQ------ 79
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
L + + + G Y C+ N D + I L+ ++
Sbjct: 80 DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDD-----FALGPHRNLSGFDRY 79
+ +A +GSR+T+PC+V TG + W + A R G +
Sbjct: 228 VIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQE 287
Query: 80 AMIGSDEEGDYSLEIYPVMLDDD-ARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ + L PV +D ++C V L + TV
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHN-TLSF-----QTLRTTVKEHHH 336
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-20
Identities = 43/224 (19%), Positives = 64/224 (28%), Gaps = 37/224 (16%)
Query: 530 VGKSEDSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD- 584
+ + SE + P + + V V C GNP P + W+ +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 585 ---------KVVGNSPNLTL--LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK----- 627
KV +L + ++ SD G Y C G T +L
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSD--KGNYTCVVENEYGS----INHTYHLDVVERS 114
Query: 628 -GRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
RP + + + G C +S P + W E+ G D
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKV 173
Query: 685 LKEGI-----KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
LK L + G Y C VSN G + L
Sbjct: 174 LKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 4e-20
Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 27/218 (12%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
ME + + V C G ++W K+ + G+
Sbjct: 20 NTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGY------- 69
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT- 142
+SL + V+ D Y C V G + L V+ I+Q
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENE-YGS---INHTYHLDVVERSRHRPILQAGLP 125
Query: 143 --LYTTEDREIELECISANGKPPAEITWI-----DGTGTVMSNVRVTEEASVDGRRTTVK 195
T ++E C I WI +G+ + + G ++
Sbjct: 126 ANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
L L E + C+ N + + A L +L K
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 3e-14
Identities = 35/177 (19%), Positives = 47/177 (26%), Gaps = 40/177 (22%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------ELYLTNITRHQHDS- 366
V+ C A NP RW N + L + ++ D
Sbjct: 33 AANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV--PSDKG 89
Query: 367 IVKCEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V N+ G + LDV P + G V +C V + P
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 422 ITWIHEDSDKVVGNSPNLTLLM---------------------TSDDLAGRYYCKAS 457
I WI P+ + T D AG Y CK S
Sbjct: 150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD-AGEYICKVS 205
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 6e-14
Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 32/190 (16%)
Query: 376 VGKSEDSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD- 430
+ + SE + P + + V V C GNP P + W+ +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 431 ---------KVVGNSPNLTL--LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK----- 473
KV +L + ++ SD G Y C G T +L
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSD--KGNYTCVVENEYGS----INHTYHLDVVERS 114
Query: 474 -GRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530
RP + + + G C +S P + W E+ G D + V
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKV 173
Query: 531 GKSEDSETLD 540
K + +
Sbjct: 174 LKHSGINSSN 183
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMI---GSD 85
A P + + VVG V C+V D +QW K G G ++ G +
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN 180
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
L ++ V D Y C+VS I G+ ++ A LTVL P +
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYI-GQ---ANQSAWLTVLPKQQAPGREK 230
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 16/175 (9%)
Query: 134 PPRIVQGDTLYT-----TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASV 187
P + + ++ C A G P + W+ +G R+
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNG-KEFKQEHRIGGYKVR 72
Query: 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQVSVIGS 245
+ +L++ +TC +N L ++ + + P +Q + +
Sbjct: 73 NQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSI 300
V G DV CK ++ +W + + + L + +H +
Sbjct: 128 ASTVVGGDVEFVCKVYSDA-QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 36/174 (20%), Positives = 49/174 (28%), Gaps = 53/174 (30%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEI---------------------GVGSSD--DYS 525
+T + C A P P + W G+E V SD +Y+
Sbjct: 34 ANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 526 --VHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 578
V N+ G + LDV P + G V +C V + P I W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 579 IHEDSDKVVGNSPNLTLLM---------------------TSDDLAGRYYCKAS 611
I P+ + T D AG Y CK S
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD-AGEYICKVS 205
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 29/201 (14%), Positives = 52/201 (25%), Gaps = 57/201 (28%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT---------ELYLTNITRHQHDS- 299
V+ C A NP RW N + L + ++ D
Sbjct: 33 AANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV--PSDKG 89
Query: 300 -----------IVKCEVQVSVIGSNR--------------LVEGTDVRLYCKAEANPSHM 334
+ + V+ +R V G DV CK ++
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA-QP 148
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------------------CEVHNDV 376
+W + + + L + +H + C+V N +
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Query: 377 GKSEDSETLDVTYGPRFRARP 397
G++ S L V + R
Sbjct: 209 GQANQSAWLTVLPKQQAPGRE 229
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+T + C A P P + W G+E + + +LI+
Sbjct: 34 ANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ-----HWSLIMESVVPSD 87
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C V N YGS + L
Sbjct: 88 KGNYTCVVENEYGSINHTYHLD 109
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 5e-20
Identities = 42/218 (19%), Positives = 69/218 (31%), Gaps = 21/218 (9%)
Query: 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDR 78
QY+ + P D TL C+V G ++W KD + +
Sbjct: 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKV---EGKPEPTIEWFKDGEPVSTNEK----KS 57
Query: 79 YAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV 138
+ + D + + D Y C +G+ SR A+L + V
Sbjct: 58 HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNR-VGQ--AVSRHASLQIAVL--RDDFR 112
Query: 139 QGDTLYT-TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS- 196
+ LEC G P + WI + ++ A R V
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA--SSRVRIVDGG 170
Query: 197 TLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVK 233
L+++ + + C AQN R A+L + VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-17
Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 30/195 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
PR P + V + L C V+G P P I W + + + L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 603 -----------AGRYYCKASVMGFPEVGAEATVYLK-GRPTIISH-RTQFGIPGDTARVE 649
G Y+C A V A++ + R + G+TA +E
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 650 CS-AFSIPPPEKVTWSYRGEEI------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
C IP P + W G + G+S +++ L+I
Sbjct: 130 CGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDG-------GNLLISNVEPID 181
Query: 703 FGVYNCSVSNPYGSD 717
G Y C N G+
Sbjct: 182 EGNYKCIAQNLVGTR 196
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 46/264 (17%), Positives = 71/264 (26%), Gaps = 78/264 (29%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
PR P + V + L C V+G P P I W D + V N + D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGA-- 66
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
L T+ + Q D C A
Sbjct: 67 ---------------------LFFYRTMQGKKEQ-----DGGEYWCVA------------ 88
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSE-TLDVTYG-PRFRARPYSVQVDRGAGVNLLCD- 567
N VG++ +L + FR P +V +G L C
Sbjct: 89 ----------------KNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGP 132
Query: 568 VDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT----------SDDLAGRYYCKAS 611
G P P + W + + G S + ++ D G Y C A
Sbjct: 133 PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPID--EGNYKCIAQ 190
Query: 612 VMGFPEVGAEATVYLKGRPTIISH 635
+ + A + ++ + H
Sbjct: 191 NLVGTRESSYAKLIVQVKAAAHHH 214
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 6e-12
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGF--DRYAMI 82
F +EP+D G L C G+ L W KD L + +S R ++
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPP--KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+L I V D+ Y+C ++G S +A L V V
Sbjct: 168 D-----GGNLLISNVEPIDEGNYKCIAQN-LVGT--RESSYAKLIVQVKAAAHHHHH 216
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/197 (13%), Positives = 47/197 (23%), Gaps = 49/197 (24%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELY----------LTNITRHQH 297
+ + L CK E P W+ + +PV + T + +
Sbjct: 21 VKKNEPATLNCKVEGKPE-PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 298 DS-------------IVKCEVQVSVIG----------SNRLVEGTDVRLYC-KAEANPSH 333
D V + + R+ +G L C + P
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP-E 138
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDS--IVK----------CEVHNDVGKSED 381
W + P+ + + + + + I C N VG E
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198
Query: 382 SE-TLDVTYGPRFRARP 397
S L V
Sbjct: 199 SYAKLIVQVKAAAHHHH 215
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 2e-19
Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 35/217 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVI-----DKTGVLQWTKDDFALGPHRNLSGF------------ 76
Q G LPC+ ++W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 77 ---DRYAMIGSD-EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
R +D + GD S+ + + L D YQC+V P + ++ LTVLV P
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKFLLTVLVKP 122
Query: 133 DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
R + +L+C G P + W + + E +
Sbjct: 123 SGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT------ 174
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + ++ T++C QN + RL
Sbjct: 175 --SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 5e-12
Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 49/213 (23%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNSP--------------- 591
++ +G L C +P +I W+ SD + +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 592 ----------------NLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 631
+ ++ +T+ D G Y CK G TV +K T
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSD-IGTYQCKVKKAPGVANKKFLLTVLVKPSGT 125
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
G+ +++C P + W + + + + +
Sbjct: 126 RCFVDGS-EEIGNDFKLKCEPKEGSLPLQFEW-QKLSDSQTMPTPWLAEMTS-------P 176
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ ++ + ++ G Y+C+V N GSD + L
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 2e-10
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 47/197 (23%)
Query: 307 VSVIGSNRLV---EGTDVRLYCKAEANPS---HMKYRW----------------YINDQP 344
+S+ + + +G L CK +P + W Y D+
Sbjct: 1 LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60
Query: 345 VPAAASATE----------------LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
+ + +TN+ +C+V G + L V
Sbjct: 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQ-LSDIGTYQCKVKKAPGVANKKFLLTVL 119
Query: 389 YGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVGNSP-------NLT 440
P + G L C+ +G+ + W + + ++
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179
Query: 441 LLMTSDDLAGRYYCKAS 457
+ S + +G Y C
Sbjct: 180 VKNASSEYSGTYSCTVQ 196
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-09
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 41/209 (19%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECI---SANGKPPAEITWI---------DGTG 173
L++ P +G+T L C S + P +I W+ D
Sbjct: 1 LSITTPEQRIEKAKGET--------AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVI 52
Query: 174 TVMSNVRVTEEASVDGR-RTTV--------KSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224
+ S ++ + D + R +++ +T + T+ C+ + K
Sbjct: 53 ILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 112
Query: 225 VARLKLLVK-YAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS 283
L +LVK + V G D +L C+ + +++ W
Sbjct: 113 KFLLTVLVKPSGTRCFVDG----SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168
Query: 284 AT------ELYLTNITRHQHDSIVKCEVQ 306
+ + N + ++ C VQ
Sbjct: 169 WLAEMTSPVISVKNASS-EYSGTYSCTVQ 196
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-09
Identities = 32/227 (14%), Positives = 58/227 (25%), Gaps = 49/227 (21%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRY 452
++ +G L C +P +I W+ SD + +L + D + Y
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQ--IVDQVIILYSGDKIYDNY 64
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR 512
Y V + G +I Q D +C
Sbjct: 65 YPDLK----GRVHFTSNDVKSGDASINVTNLQ---LSDIGTYQCK--------------- 102
Query: 513 GEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGN 571
V G + L V P + G L C+ +G+
Sbjct: 103 -------------VKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGS 149
Query: 572 PAPEITWIHEDSDKVVGNSP-------NLTLLMTSDDLAGRYYCKAS 611
+ W + + +++ S + +G Y C
Sbjct: 150 LPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQ 196
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 17/106 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
D + +G+ L C +W K + + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS------DSQTMPTPWLAEMTSP 176
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ + + Y C V + + L V VPP
Sbjct: 177 ----VISVKNASSEYSGTYSCTVQNRVGSD----QCMLRLDV-VPP 213
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 34/147 (23%)
Query: 643 GDTARVECSAFSIP---PPEKVTW---------------SYRGEEIGVGSSDDY----SV 680
G+TA + C P P + W Y G++I D
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK--SFPLLLI-LTG 737
+ +K G +++ + + G Y C V G + + +L S + +
Sbjct: 75 TSNDVKSG-DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 738 VIGCVVILVALTMVVILCQRKVKKPPP 764
IG L C+ K P
Sbjct: 134 EIGNDFKLK--------CEPKEGSLPL 152
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 3e-19
Identities = 36/225 (16%), Positives = 57/225 (25%), Gaps = 30/225 (13%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
M+ + + V C G + W K+ + G
Sbjct: 20 MDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREFRGEHRIGGI-------KLRH 69
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV--PPDPPRIVQGDTLYT 145
+SL + V+ D Y C V G + TL VL P P T
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKF-GS---IRQTYTLDVLERSPHRPILQAGLPANQT 125
Query: 146 -TEDREIELECISANGKPPAEITW-----IDGTGTVMSNVRVTEEASVDGRRTTVK-STL 198
++E C I W ++G+ + L
Sbjct: 126 AVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVI 243
L E + C+A N K L V + ++
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLS--VHGPRAAEEELV 227
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 1e-17
Identities = 42/215 (19%), Positives = 57/215 (26%), Gaps = 28/215 (13%)
Query: 535 DSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------ED 582
D +T T P + R + V V C GNP P I+W+
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 583 SDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH 635
+ +L+M S D G Y C G V +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSD-RGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 636 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK---- 690
Q + G C +S P + W E G D + LK I
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 691 --STLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L + G Y C +N G L
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 5e-16
Identities = 36/217 (16%), Positives = 55/217 (25%), Gaps = 45/217 (20%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS- 366
VR C A NP+ W N + L + ++ D
Sbjct: 29 AANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRG 85
Query: 367 IVKCEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 421
C V N G + TLDV P + G+ V C V + P
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH 145
Query: 422 ITWIHEDSDKVVGNSPNLTLLMTSDDL---------------------AGRYYCKAS-VM 459
I W+ P+ T +T G Y C+A+ +
Sbjct: 146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Query: 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 496
G + + G + + V
Sbjct: 206 G--VAEKAFWLSVHGPRAAEEELVE---ADEAGSVHH 237
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 3e-13
Identities = 40/228 (17%), Positives = 61/228 (26%), Gaps = 58/228 (25%)
Query: 475 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI------------------ 516
RP + + +T R C A P P ++W G E
Sbjct: 16 RPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQQWSL 74
Query: 517 ---GVGSSD--DYS--VHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNL 564
V SD +Y+ V N G + TLDV P + G+ V
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 134
Query: 565 LCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---------------------A 603
C V + P I W+ P+ T +T
Sbjct: 135 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDG 194
Query: 604 GRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 650
G Y C+A+ +G + + G + + V
Sbjct: 195 GEYLCRATNFIG--VAEKAFWLSVHGPRAAEEELVE---ADEAGSVHH 237
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-12
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 17 LSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSG 75
L + + +R A P +QTAV+GS V C+V D +QW K G G
Sbjct: 104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 163
Query: 76 FDRYAMIGS----DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
++ S E D L + V D Y C+ + I G + L+V P
Sbjct: 164 TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI-GV---AEKAFWLSVHGP 219
Query: 132 PDPPR 136
Sbjct: 220 RAAEE 224
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-12
Identities = 37/182 (20%), Positives = 54/182 (29%), Gaps = 22/182 (12%)
Query: 381 DSETLDVTYGPRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH--------ED 428
D +T T P + R + V V C GNP P I+W+
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 429 SDKVVGNSPNLTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGR---PTIISH 481
+ +L+M S D G Y C G V +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSD-RGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 482 -RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540
Q + G C +S P + W E G D + + V KS SE+++
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 541 VT 542
Sbjct: 180 AD 181
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 130 VPPDPPRIVQGD-----TLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTE 183
V P + + L + C A G P I+W+ +G
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR-------EFRG 58
Query: 184 EASVDGRRTTVK-STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK--YAPKVQV 240
E + G + + +LV+ +TC +N + L +L + + P +Q
Sbjct: 59 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 118
Query: 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 295
+ + V G+DV +CK ++ +W + + + + +
Sbjct: 119 GLPANQTAVLGSDVEFHCKVYSDA-QPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
RP + + +T R C A P P ++W G E L
Sbjct: 16 RPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQ---- 70
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ +L++ G Y C V N +GS L
Sbjct: 71 -QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 9e-07
Identities = 28/214 (13%), Positives = 54/214 (25%), Gaps = 60/214 (28%)
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---------SATELYLTNITRHQHDS- 299
VR C A NP+ W N + L + ++ D
Sbjct: 29 AANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRG 85
Query: 300 -----------IVKCEVQVSVIGSNR--------------LVEGTDVRLYCKAEANPSHM 334
++ + V+ + V G+DV +CK ++
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA-QP 144
Query: 335 KYRWYINDQPVPAAASATELYLTNITRHQHDSIVK-------------------CEVHND 375
+W + + + + + V+ C N
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 376 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVN 409
+G +E + L V V+ D V+
Sbjct: 205 IGVAEKAFWLSVHGPRAA--EEELVEADEAGSVH 236
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 4e-19
Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 23/172 (13%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
PK + + V + V L C+ +P +W+ N +P Y
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT--HTQPSYRFKAN 59
Query: 294 RHQHDSIVKCEVQ-----------------VSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336
C+ V EG + L C + + +K
Sbjct: 60 N-NDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKV 118
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388
++ N + + + H C + S+ + +T
Sbjct: 119 TFFQNGKSQKFSHLDPTFSIPQANHS-HSGDYHCTGNIGYT-LFSSKPVTIT 168
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 22/181 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLA 603
+ P + V + V L C +P + I W H + P+ ++D +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNND-S 63
Query: 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 663
G Y C+ + + + ++ G+T + C ++ P KVT+
Sbjct: 64 GEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG---SDSVE 720
G+ D T I ++ H H G Y+C+ + Y S V
Sbjct: 121 FQNGKSQKFSHLD--------------PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166
Query: 721 I 721
I
Sbjct: 167 I 167
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-12
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 31/183 (16%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
+ + P ++Q D++ L C A I W + ++ + +
Sbjct: 6 VLKLEPPWINVLQEDSV--------TLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK 57
Query: 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSN 246
+ + + +TCQ T + L V + V +
Sbjct: 58 AN----------------NNDSGEYTCQTGQ----TSLSDPVHLTVLFEWLVLQT--PHL 95
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQ 306
EG + L C + + +K ++ N + + + H C
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS-HSGDYHCTGN 154
Query: 307 VSV 309
+
Sbjct: 155 IGY 157
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLA 449
+ P + V + V L C +P + I W H + P+ ++D +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNND-S 63
Query: 450 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509
G Y C+ + + + ++ G+T + C ++ P KVT+
Sbjct: 64 GEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 510 SYRGEEIGVGSSD 522
G+ D
Sbjct: 121 FQNGKSQKFSHLD 133
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 34/191 (17%), Positives = 54/191 (28%), Gaps = 45/191 (23%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+EP + VTL C+ +QW + + H
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------------- 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ +D Y CQ L +P LTVL ++Q L E
Sbjct: 52 -PSYRFKANNNDSGEYTCQTGQTSLSDPV------HLTVLFEW---LVLQTPHLEFQEGE 101
Query: 150 EIELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
I L C S KP ++T+ +G S++ T + H+
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD---------------PTFSIPQANHSHS 146
Query: 209 TTFTCQAQNTA 219
+ C
Sbjct: 147 GDYHCTGNIGY 157
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-19
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 29/196 (14%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT---LLM 597
+ PR P + V +G L C +G P P I W ++V + + +L+
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 598 TSDDL--------------AGRYYCKASVMGFPEVGAEATVYLKG-RPTIISH-RTQFGI 641
S L G Y C A V +A++ + R +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G+ A +EC P ++W G + D+ + L+I +R
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPL--DDKDERITIRG-------GKLMITYTRKS 175
Query: 702 HFGVYNCSVSNPYGSD 717
G Y C +N G
Sbjct: 176 DAGKYVCVGTNMVGER 191
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-18
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 30/214 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P D G TL C+ G ++W K + ++ R +
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA---EGRPTPTIEWYKGGERVETDKDDPRSHRMLL--- 64
Query: 85 DEEGD---YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG- 140
G + D+ Y C V+ LGE S A+L V + Q
Sbjct: 65 -PSGSLFFLRIVHGRKSRPDEGVYVC-VARNYLGE--AVSHDASLEVAIL--RDDFRQNP 118
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVL 200
+ +EC G P I+W + D R T L++
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK---------DERITIRGGKLMI 169
Query: 201 TPKKEHHNTTFTCQAQNTADRTY-KVARLKLLVK 233
T ++ + C N +VA L +L +
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 41/206 (19%), Positives = 62/206 (30%), Gaps = 42/206 (20%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT---LLM 443
+ PR P + V +G L C +G P P I W ++V + + +L+
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 444 TSDDL--------------AGRYYCKASVMGFPEVGAEATVYLKG-RPTIISH-RTQFGI 487
S L G Y C A V +A++ + R +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 488 PGDTARVECSAFSIPPPEKVTWSYRGEEI-----------------GVGSSD--DYS--V 526
G+ A +EC P ++W G + SD Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVG 184
Query: 527 HNDVGKSEDSE-TLDVTYGPRFRARP 551
N VG+ E L V P F
Sbjct: 185 TNMVGERESEVAELTVLERPSFVKAA 210
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 29/114 (25%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F P D VG + C+ + W KD L D I
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK------DERITIRGG- 165
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
L I D +Y C V T ++GE S A LTVL P V+
Sbjct: 166 ----KLMITYTRKSDAGKYVC-VGTNMVGE--RESEVAELTVLE---RPSFVKA 209
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 48/194 (24%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE----------LYLTNIT---R 294
+ +G L CKAE P+ WY + V L+ I +
Sbjct: 21 VSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 295 HQHDS-------------IVKCEVQVSVIG----------SNRLVEGTDVRLYCKA-EAN 330
+ D V + + V + G + C+ +
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139
Query: 331 PSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDS-IVKCEVHNDVGKSEDSE- 383
P W + P+ +L +T + D+ C N VG+ E
Sbjct: 140 P-EPTISWKKDGSPLDDKDERITIRGGKLMITYTRK--SDAGKYVCVGTNMVGERESEVA 196
Query: 384 TLDVTYGPRFRARP 397
L V P F
Sbjct: 197 ELTVLERPSFVKAA 210
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 5e-19
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 40/210 (19%)
Query: 545 PRFRARPYSVQVDRGAGVNLL-CDVDGNPAPEITWIH-----EDSDK----VVGNSPNLT 594
F +V++ V + ++ +I + K + N+ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 595 LLM---TSDDLAGRYYCKAS-------------VMGFPEVGAEAT-----VYLKGRPTII 633
+ M +D G Y + F ++ EA K P +
Sbjct: 63 MFMEKLQDED-EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTL 693
+ + ++C +I + W EI S D+ +D + TL
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFKDGI-----CTL 173
Query: 694 IIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+I E G+Y + + G D + L
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 1e-16
Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 30/218 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F + +V + +G + + ++ + + +Y M
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNE------KEIFEGPKYKMHIDRNT 58
Query: 88 GDYSLEIYPVMLDDDARYQCQVS------------TGILGEPAIRSRFATLTVLVPPDPP 135
G + + + +D+ Y Q+ G + + + + P
Sbjct: 59 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 136 RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195
V+ + T + + L+C AN K I W + + + + +
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI-------- 170
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
TL++T + + ++ + +RLKL+ +
Sbjct: 171 CTLLITEFSKKDAGIYEVILKDDRGKD--KSRLKLVDE 206
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 34/173 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLL-CDVDGNPAPEITWIH-----EDSDK----VVGNSPNLT 440
F +V++ V + ++ +I + K + N+ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 441 LLM---TSDDLAGRYYCKAS-------------VMGFPEVGAEAT-----VYLKGRPTII 479
+ M +D G Y + F ++ EA K P +
Sbjct: 63 MFMEKLQDED-EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 480 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532
+ + ++C +I + W EI + + + +
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGICT 172
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 8e-10
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 43/183 (23%)
Query: 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------SATELYLTNITRHQ 363
++E VR + +AE + K + N++ + E+++ +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD-- 70
Query: 364 HDS-IVKCEVHNDVGKSEDSETLDVTY-------------------GPRFRARPYSVQVD 403
D ++ + + + L GP F S +V
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSWEVT 129
Query: 404 RGAGVNLLCDVDGNPAP-EITWIHED-----SDKVVGNSPNLTLL---MTSDDLAGRYYC 454
V L C V I W ++ +K TLL + D AG Y
Sbjct: 130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD-AGIYEV 188
Query: 455 KAS 457
Sbjct: 189 ILK 191
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 4e-08
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 19/149 (12%)
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E ++ + A++ +I + + + +D + + + ++
Sbjct: 15 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY--KMHIDRNTGII--EMFMEKLQD 70
Query: 206 HHNTTFTCQAQN-----TADRTYKVARLKLLVKYAPKVQVSVIG----------SNRLVE 250
T+T Q Q+ + K L K A + I S +
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 130
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+V L CK WY +++ +
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREIS 159
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 56/195 (28%)
Query: 247 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----------SATELYLTNITR-- 294
++E VR + +AE + K + N++ + E+++ +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 295 -----------------------------------HQHDSIVKCEVQVSVIGSNRLVEGT 319
+ + I K S +
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 320 DVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITRHQHDSIVKCEVH 373
+V L CK WY +++ + L +T ++ + I + +
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK-KDAGIYEVILK 191
Query: 374 NDVGKSEDSETLDVT 388
+D G +D L +
Sbjct: 192 DDRG--KDKSRLKLV 204
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 9e-19
Identities = 31/206 (15%), Positives = 57/206 (27%), Gaps = 36/206 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 602
F P ++ RG L C + PE+ W+ + + +S + + D+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 603 -----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGD 644
G+Y C + V V L+G P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
+ C A P P + W + + +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG-------------PQRSLHVPGLNKTS 169
Query: 705 VYNCSVSNPYG---SDSVEIMLKPQK 727
++C N G S + I + PQ+
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVLPQQ 195
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 1e-17
Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 27/205 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
F P + T G TL C++ G + W +D L + D+
Sbjct: 5 FVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 87 -EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLY 144
L I + L D +YQC V G S+ + + P ++ +
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLG-HQT--FVSQPGYVGLEG---LPYFLEEPEDRT 117
Query: 145 TTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ L C A G P P ++ W+ ++A L
Sbjct: 118 VAANTPFNLSC-QAQGPPEPVDLLWL-------------QDAVPLATAPGHGPQRSLHVP 163
Query: 204 KEHHNTTFTCQAQNTADRTYKVARL 228
+ ++F+C+A N T
Sbjct: 164 GLNKTSSFSCEAHNAKGVTTSRTAT 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 6e-15
Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 38/193 (19%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL- 448
F P ++ RG L C + PE+ W+ + + +S + + D+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 449 -----------------AGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGD 490
G+Y C + V V L+G P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 491 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD---------------YS--VHNDVGKS 533
+ C A P P + W + +S HN G +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVT 182
Query: 534 EDSETLDVTYGPR 546
S T +T P+
Sbjct: 183 T-SRTATITVLPQ 194
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 9e-15
Identities = 26/162 (16%), Positives = 44/162 (27%), Gaps = 20/162 (12%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
G L C+ + + W + Q + A S +V
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 370 ----------CEVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP 418
C V + + P F P V NL C G P
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 419 AP-EITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
P ++ W+ + G+ P +L + + + C+A
Sbjct: 135 EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-12
Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 38/175 (21%)
Query: 475 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS-------- 525
+ + G G T + C P +V W G+ + + S
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 526 -------------------------VHNDVGKSE-DSETLDVTYGPRFRARPYSVQVDRG 559
V + + P F P V
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 560 AGVNLLCDVDGNPAP-EITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
NL C G P P ++ W+ + G+ P +L + + + C+A
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 5/149 (3%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRT 192
P + + L C P E+ W+ DG +++ T+ + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 193 TVK--STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
S L +T + + C + ++ P + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYF-LEEPEDRTVAA 120
Query: 251 GTDVRLYCKAEANPSHMKYRWYINDQPVP 279
T L C+A+ P + W + P+
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 38/181 (20%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASA-----------------TELYLTN 291
G L C+ + + W + Q + A S ++L +T+
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 292 ITRH-----------QHDSIVKCEVQVSVIG---------SNRLVEGTDVRLYCKAEANP 331
+ H + V V + G + T L C+A+ P
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 332 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391
+ W + P+ A ++ S CE HN G + S T +T P
Sbjct: 135 EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTT-SRTATITVLP 193
Query: 392 R 392
+
Sbjct: 194 Q 194
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 30/113 (26%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV-----LQWTKDDFALGPHRNLSGFDRYAMIG 83
F EP+D+T + L C+ G L W +D L
Sbjct: 108 YFLEEPEDRTVAANTPFNLSCQA---QGPPEPVDLLWLQDAVPLATAP------------ 152
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
SL + L+ + + C+ G SR AT+TVL P +
Sbjct: 153 -GHGPQRSLHV--PGLNKTSSFSCEAHN-AKGV--TTSRTATITVL----PQQ 195
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 1e-18
Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 28/219 (12%)
Query: 29 KFAMEPQDQTAV-VGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
K P+ + +G V+L C + W L+G +E
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI-----DSPLNGKVT------NE 50
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTT 146
+L + PV ++ Y C + + + + P P I L
Sbjct: 51 GTTSTLTMNPVSFGNEHSYLCTATCE----SRKLEKGIQVEIYSFPKDPEIHLSGPL--E 104
Query: 147 EDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
+ I ++C A+ P EI + G + S + + + + TP
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTFTPVI 162
Query: 205 EHHNTTFTCQAQNTADR-----TYKVARLKLLVKYAPKV 238
E C+A+ D T + A +L V +PK
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 7e-15
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 10/172 (5%)
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLLMTSDDLAGRY 606
G V+L C G +P +W + G + LT+ S Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 607 YCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWS- 664
C A+ ++ V + P H + G V+CS + P +++
Sbjct: 70 LCTATCES-RKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
+G+ + + S + + E + D V C
Sbjct: 129 LKGDHL-MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 3e-11
Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 35/202 (17%)
Query: 126 LTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
+ P+ + Q GD+ + L C S G +W + ++ E
Sbjct: 1 FKIETTPESRYLAQIGDS--------VSLTC-STTGCESPFFSWRTQIDSPLNGKVTNE- 50
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
STL + P + ++ C A + + K ++++ Y+ +
Sbjct: 51 --------GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI---YSFPKDPEIHL 99
Query: 245 SNRLVEGTDVRLYCKAEANP--SHMKYRWYINDQPVP-----------AAASATELYLTN 291
S L G + + C ++ D + + + +
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT 159
Query: 292 ITRHQHDSIVKCEVQVSVIGSN 313
++ C ++ + +
Sbjct: 160 PVIEDIGKVLVCRAKLHIDEMD 181
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 3e-10
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 27/194 (13%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ-----PVPAAASATELYLTN 358
+++ + G V L C + W V + + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNP 60
Query: 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN- 417
++ ++ C + K E +++ P+ S ++ G + + C V
Sbjct: 61 VSF-GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 418 --PAPEITW-----------IHEDSDKVVGNSPNLTLLMT--SDDLAGRYYCKASV---- 458
EI ED+D+ + +L + T +D+ C+A +
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 459 MGFPEVGAEATVYL 472
M +A L
Sbjct: 180 MDSVPTVRQAVKEL 193
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 1e-09
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%)
Query: 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHED------SDKVVGNSPNLTLLMTSDDLAGRY 452
G V+L C G +P +W + G + LT+ S Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 453 YCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWS- 510
C A+ ++ V + P H + G V+CS + P +++
Sbjct: 70 LCTATCES-RKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 511 YRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPR 546
+G+ + + + KS ++++L+VT+ P
Sbjct: 129 LKGDHL---MKSQEFLEDADRKSLETKSLEVTFTPV 161
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-08
Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
K G +T+ C V D + K D + L DR
Sbjct: 92 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR----K 147
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILG---EPAIRSRFATLTVLVPP 132
S E + PV+ D C+ I P +R L V + P
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 9e-08
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 42/180 (23%)
Query: 488 PGDTARVECSAFSIPPPEKVTW------SYRGEEIGVGSSDDYSV--------------- 526
GD+ + CS P +W G+ G++ ++
Sbjct: 15 IGDSVSLTCSTTGCESPF-FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTA 73
Query: 527 HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN---PAPEITW----- 578
+ K E +++ P+ S ++ G + + C V EI
Sbjct: 74 TCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133
Query: 579 ------IHEDSDKVVGNSPNLTLLMT--SDDLAGRYYCKASV----MGFPEVGAEATVYL 626
ED+D+ + +L + T +D+ C+A + M +A L
Sbjct: 134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKEL 193
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
GD+ + CS P +W + D + EG STL +
Sbjct: 15 IGDSVSLTCSTTGCESPF-FSWR---------TQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
+ Y C+ + I +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQV 86
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 5e-05
Identities = 20/202 (9%), Positives = 48/202 (23%), Gaps = 47/202 (23%)
Query: 237 KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ-----PVPAAASATELYLTN 291
K++ + G V L C + W V + + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNP 60
Query: 292 ITRHQHDSIVKC-----------EVQVSVIG---------SNRLVEGTDVRLYCKAEANP 331
++ ++ C +QV + S L G + + C
Sbjct: 61 VSF-GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 332 --SHMKYRWYINDQPVP-----------AAASATELYLTNITRHQHDSIVKCEVHNDVGK 378
++ D + + + + ++ C + +
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 379 -------SEDSETLDVTYGPRF 393
+ + L V P+
Sbjct: 180 MDSVPTVRQAVKELQVYISPKN 201
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 2e-18
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
K +VS+ + +G +V L C +W+ N + + L + N
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--TNSSLNIVNAK 59
Query: 294 RHQHDSIVKCEVQVS-----------------VIGSNRLVEGTDVRLYCKAEANPSHMKY 336
+ KC+ Q + ++EG + L C N K
Sbjct: 60 F-EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKV 118
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-KSEDSETLDVTYGPRFR 394
+Y + + + + +TN T C + + V PR +
Sbjct: 119 IYYKDGEALKYWYENHNISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 7e-18
Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 599
V P+ P ++ +G V L C+ + W H + + +L ++
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAK 59
Query: 600 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
+ +G Y C+ + E + + ++ + + G + C +
Sbjct: 60 FEDSGEYKCQHQQVNESE---PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG---S 716
KV + GE + + + I + + G Y C+ S
Sbjct: 117 KVIYYKDGEALKYWYEN--------------HNISITNATVEDSGTYYCTGKVWQLDYES 162
Query: 717 DSVEI 721
+ + I
Sbjct: 163 EPLNI 167
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 6e-14
Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 22/180 (12%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTS 445
V P+ P ++ +G V L C+ + W H + + +L ++
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAK 59
Query: 446 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
+ +G Y C+ + E + + ++ + + G + C +
Sbjct: 60 FEDSGEYKCQHQQVNESE---PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 506 KVTWSYRGEEIGVGSSD--------------DY--SVHNDVG-KSEDSETLDVTYGPRFR 548
KV + GE + + Y + + + V PR +
Sbjct: 117 KVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-12
Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 46/210 (21%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
P G VTL C + V +W + EE +
Sbjct: 10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS------------------EETNS 51
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
SL I +D Y+CQ EP F+ +L +++G L+
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEV-VMEGQPLF------ 104
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
L C ++ + DG + +T +
Sbjct: 105 --LRCHGWRNWDVYKVIYYKDGEALKYWYEN---------------HNISITNATVEDSG 147
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239
T+ C + Y+ L + V AP+ +
Sbjct: 148 TYYCTGKVWQ-LDYESEPLNITVIKAPREK 176
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 32/170 (18%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEA 185
V + P RI +G+ + L C N + W +G+
Sbjct: 6 KVSLNPPWNRIFKGENVT--------LTCNGNNFFEVSSTKWFHNGS------------- 44
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
S+L + K + + CQ Q + + L V + +
Sbjct: 45 ----LSEETNSSLNIVNAKFEDSGEYKCQHQQVN----ESEPVYLEVFSDWLL--LQASA 94
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRH 295
++EG + L C N K +Y + + + + +TN T
Sbjct: 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE 144
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 21/172 (12%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 475 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND--- 529
+P + + + G+ + C+ + W + G ++ ++ N
Sbjct: 4 KPKVSLNPPWNRI-FKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFE 61
Query: 530 --------VGKSEDSETLDVTYGPR-FRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWI 579
+ +SE + + + + V G + L C N ++ +
Sbjct: 62 DSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 580 HEDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630
+ K + N+++ + + +G YYC V + + P
Sbjct: 122 KDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 629 RPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
+P + + + G+ + C+ + W + G
Sbjct: 4 KPKVSLNPPWNRI-FKGENVTLTCNGNNFFEVSSTKWFHNGSLS---------------- 46
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
E S+L I ++ + G Y C S+ V + +
Sbjct: 47 EETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSD 86
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 21/111 (18%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAM 81
+ ++ + + G + L C V + + KD AL
Sbjct: 82 EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------- 132
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
++++ I ++D Y C L S +TV+ P
Sbjct: 133 -------NHNISITNATVEDSGTYYCTGKVWQLDY---ESEPLNITVIKAP 173
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 4e-18
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
R++E V L C+ +P +W+ N+ + + AS ++ T +C+
Sbjct: 16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--SYFIDAATV-DDSGEYRCQ 72
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSD 430
S D L+V G P V ++L C N A ++T++
Sbjct: 73 TQLST-LS-DPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKG 129
Query: 431 -KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 478
K ++ + + + +G Y+C+ V + + +
Sbjct: 130 RKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-16
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 23/177 (12%)
Query: 235 APKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNIT 293
PK V + V E V L C+ +P +W+ N+ + + AS ++ T
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--SYFIDAAT 62
Query: 294 RHQHDSIVKCEVQVS-----------------VIGSNRLVEGTDVRLYCKAEANPSHMKY 336
+C+ Q+S E + L C + N + K
Sbjct: 63 V-DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121
Query: 337 RWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-KSEDSETLDVTYGPR 392
+ N + ++ Y+ T + C S ++ + +T G
Sbjct: 122 TYLQNGKGRKYFHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-15
Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 24/190 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
P +V V L C +P + T + + + + + + D +G Y C+
Sbjct: 14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQT 73
Query: 611 SVMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668
+ + V L ++ D + C ++ KVT+ G+
Sbjct: 74 QLSTLSD-----PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN---PYGSDSVEIMLKP 725
+ S I ++ G Y C S++V+I +
Sbjct: 129 GRKYFHHN--------------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Query: 726 QKSFPLLLIL 735
+ +
Sbjct: 175 GLAVSTISSF 184
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 6e-12
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGS------------SDDYSVHNDVGKSEDS 536
D+ ++C P + W + I + S +Y + D
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDP 81
Query: 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSD-KVVGNSPNLT 594
L+V G P V ++L C N A ++T++ K ++ +
Sbjct: 82 VQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFY 140
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 632
+ + +G Y+C+ V + + +
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 46/209 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
EPQ + VTL C+ QW ++ + +
Sbjct: 13 EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS------------------ 54
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S I +DD Y+CQ L +P L V + ++Q E+
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTLSDPV------QLEVHIGWL---LLQAPRWVFKEEDP 105
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
I L C S ++T+ +G G + S + +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFH---------------HNSDFYIPKATLKDSG 150
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYAPKV 238
++ C+ + + +++ + V
Sbjct: 151 SYFCRGLVGS-KNVSSETVQITITQGLAV 178
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 7e-10
Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 24/169 (14%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
P +V V L C +P + T + + + + + + D +G Y C+
Sbjct: 14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQT 73
Query: 457 SVMGFPEVGAEATVYL--KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 514
+ + V L ++ D + C ++ KVT+ G+
Sbjct: 74 QLSTLSD-----PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 515 EIGVGSSD--------------DY--SVHNDVG-KSEDSETLDVTYGPR 546
+ Y S ++ + +T G
Sbjct: 129 GRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 5e-18
Identities = 47/327 (14%), Positives = 84/327 (25%), Gaps = 56/327 (17%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAM-IGSDEEGDY 90
+ P G V + C L G + G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTS---------------CDQPKLLGIETPLPKKELLLPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + +
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVELAPLPSWQP-VGKN 103
Query: 151 IELECISANGKPPAEIT--WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A +T + G + V E A V T + +++HH
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHG 154
Query: 209 TTFTCQAQNTAD------RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262
F+C+ + A +L P ++ L T + C +
Sbjct: 155 ANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDG 214
Query: 263 NP--SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTD 320
S + + DQ + +T K V V+
Sbjct: 215 LFPVSEAQVHLALGDQRLNP----------TVTYGNDSFSAKASVSVTAEDEG------T 258
Query: 321 VRLYCKAEANPSHMKYRWYINDQPVPA 347
RL C + + PA
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSFPA 285
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 4e-11
Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 31/296 (10%)
Query: 306 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
Q SV S ++ G V + C P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDG-NPAPE 421
DS C + G+S L V + P R P G + L C V+G P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 422 ITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA------- 466
+T + + T+L+ D + C+ + P+
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 467 --EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524
+ ++ + V CS + P + + + +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTV 236
Query: 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG---VNLLCDVDGNPAPEIT 577
+ ND ++ S ++ + + V G + PAP +
Sbjct: 237 TYGNDSFSAKASVSVTAE---DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 1e-10
Identities = 39/287 (13%), Positives = 76/287 (26%), Gaps = 47/287 (16%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL--AGR 451
P V + RG V + C + + K + N + ++ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 452 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C ++ TVY ++ + G + C P +T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 511 -YRGEE-----------------IGVGSSDD---YS--VHNDVG--------KSEDSETL 539
RGE+ + V +S D+ + L
Sbjct: 123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQL 182
Query: 540 DVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV-------GNS 590
P + ++ ++C +DG P E D+ + +S
Sbjct: 183 QTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS 242
Query: 591 PNLTLLMT---SDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTII 633
+ ++ D+ R C + E T+Y P +I
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 8e-10
Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 27/223 (12%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
++ + P VG +TL C+V + + + L +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--------- 137
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQV--STGILGEPAIRSRFATLTVLV---PPDPPRIV 138
E + + + A + C+ G + A + P PP++V
Sbjct: 138 --EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195
Query: 139 QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTL 198
L D + + C P +E G N VT + K+++
Sbjct: 196 SPRVL--EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG----NDSFSAKASV 249
Query: 199 VLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
+T ++ TC + + + AP V ++
Sbjct: 250 SVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-09
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 12/188 (6%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL--AGR 605
P V + RG V + C + + K + N + ++ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 606 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C ++ TVY ++ + G + C P +T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
RGE+ E + E + T + R H ++C +E+
Sbjct: 123 LLRGEKELKR--------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Query: 724 KPQKSFPL 731
+ L
Sbjct: 175 NTSAPYQL 182
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 41/291 (14%), Positives = 84/291 (28%), Gaps = 52/291 (17%)
Query: 239 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 296
Q SV S ++ G V + C P + + + + + ++Y ++ Q
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVY--ELSNVQ 58
Query: 297 HDSIVKCEV--------------------QVSVIGSNRLV-EGTDVRLYCKAEAN--PSH 333
DS C +V + G ++ L C+ E ++
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 334 MKYRWYINDQPVPAAASATELYLTNIT----RHQHDSIVKCEVHNDVG--------KSED 381
+ ++ + + E T R H + C D+ +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 382 SETLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV------ 433
L P + ++ ++C +DG P E D+ +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 434 -GNSPNLTLLMT---SDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTII 479
+S + ++ D+ R C + E T+Y P +I
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 9e-08
Identities = 37/285 (12%), Positives = 74/285 (25%), Gaps = 42/285 (14%)
Query: 488 PGDTARVECSAFSIPPPEKVTWS-YRGEEIGVGSSDDYSVHNDVGKSEDSE--------- 537
G + V CS S P+ + ++ + ++ V+ EDS+
Sbjct: 13 RGGSVLVTCST-SCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPD 71
Query: 538 -TLDVTYGPRFRARPYSVQ-------VDRGAGVNLLCDVDG-NPAPEITW--------IH 580
P V+ G + L C V+G P +T +
Sbjct: 72 GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131
Query: 581 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA---------EATVYLKGRPT 631
+ T+L+ D + C+ + P+ + ++
Sbjct: 132 REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP 191
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
+ V CS + P + + + + Y K +
Sbjct: 192 PQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV 251
Query: 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILT 736
T + + C+V S + +ILT
Sbjct: 252 T-----AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 5e-18
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
++E V L C+ +P +W+ N+ + + A+ ++ T + +C+
Sbjct: 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFIDAATVN-DSGEYRCQ 72
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSD 430
+ D L+V G P V ++L C N ++T++ D
Sbjct: 73 TNLSTL--SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKD 129
Query: 431 -KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470
K ++ + + + +G Y+C+ V +
Sbjct: 130 RKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 232 VKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLT 290
+ PK V + V E V L C+ +P +W+ N+ + + A+ ++
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFID 59
Query: 291 NITRHQHDSIVKCEVQVSV-----------------IGSNRLVEGTDVRLYCKAEANPSH 333
T + +C+ +S E + L C + N +
Sbjct: 60 AATVN-DSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTAL 118
Query: 334 MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGK-SEDSETLDVTYG 390
K + N + ++ ++ T C S ++ + +T
Sbjct: 119 HKVTYLQNGKDRKYFHHNSDFHIPKATLK-DSGSYFCRGLVGSKNVSSETVNITITQA 175
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 5e-15
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 610
P V V L C +P T + + + + + + + +G Y C+
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73
Query: 611 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 670
++ + + + ++ D + C ++ KVT+ G++
Sbjct: 74 NLSTLSD---PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN---PYGSDSVEI 721
+ S I ++ G Y C S++V I
Sbjct: 131 KYFHHN--------------SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-12
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 475 RPTIISHRTQFGI-PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD----------- 522
+ + + + D+ ++C P W + I +S
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDS 66
Query: 523 -DYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIH 580
+Y ++ D L+V G P V ++L C N ++T++
Sbjct: 67 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQ 125
Query: 581 EDSD-KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624
D K ++ + + + +G Y+C+ V +
Sbjct: 126 NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 46/206 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
EPQ + + VTL C+ QW ++ + +
Sbjct: 13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------------ 54
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S I ++D Y+CQ + L +P L V + ++Q E+
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSDPV------QLEVHIGW---LLLQAPRWVFKEEDP 105
Query: 151 IELECISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
I L C S ++T+ +G + S + +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKDRKYFH---------------HNSDFHIPKATLKDSG 150
Query: 210 TFTCQAQNTADRTYKVARLKLLVKYA 235
++ C+ + + + + A
Sbjct: 151 SYFCRGLVGSKNVSS-ETVNITITQA 175
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-10
Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
P V V L C +P T + + + + + + + +G Y C+
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73
Query: 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI 516
++ + + + ++ D + C ++ KVT+ G++
Sbjct: 74 NLSTLSD---PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 517 GV-GSSDDYSVHN 528
+ D+ +
Sbjct: 131 KYFHHNSDFHIPK 143
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 5e-18
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD---FALGPHRNLSGFDRY 79
+ D+T V G V L C+V D + LQW+ G R L +R
Sbjct: 35 NLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRD-NRI 93
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
++ S + S+ I V L D+ Y C + T +R+ + +TVL P P I
Sbjct: 94 QLVTSTP-HELSISISNVALADEGEYTCSIFTM-----PVRTAKSLVTVLGIPQKPII 145
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 44/298 (14%), Positives = 85/298 (28%), Gaps = 29/298 (9%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNL---------SGFDRYAMI 82
+ + G L C V V +QW + GP R L +
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGA---GPARELIYNQKEGHFPRVTTVSES 66
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
E D+S+ I + D Y C + +S T + +V G
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126
Query: 143 LYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
T + C S P + W + + + ST +
Sbjct: 127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIH-STAKVV 185
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261
+E ++ C+ + + + L + + + V + C+
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245
Query: 262 A-NPSHMKYRWYINDQPVPAAASATEL-----------YLT-NITRHQHDSIVKCEVQ 306
P ++ W N ++T +L N++ H+ D + C+V+
Sbjct: 246 KFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE 303
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 29/205 (14%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ A V+ C + L+W K+ L +G
Sbjct: 118 SAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS-----DFQTNVDPVGE 172
Query: 85 DEEGDYS----LEIYPVMLDDDARYQCQV-----STGILGEPAIRSRFATLTVLVPPDPP 135
YS ++ D ++ C+V L A S + +
Sbjct: 173 S--VSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ 230
Query: 136 RIVQGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
+ + + + C P ++TW++ + T + DG +
Sbjct: 231 PVRAENQ--------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWM 282
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTA 219
S L++ + TCQ ++
Sbjct: 283 -SWLLVNVSAHRDDVKLTCQVEHDG 306
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 52/210 (24%)
Query: 551 PYSVQVDRGAGVNLLCDVDGN-----------PAPEITWIHE-----------DSDKVVG 588
SV V G L C V P I+ S+
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 589 NSPNLTLLMTS---DDLAGRYYC----KASVMGFPEVGAEATVYLKGRP--TIISHRTQF 639
+ + ++ +++ D AG YYC K S + GA + ++ +P ++S
Sbjct: 70 ENMDFSISISNITPAD-AGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 640 GIPGDTARVECSA--FSIPPPEKVTWSYRGEEIG--------VGSSDDYSVLEDPLKEGI 689
P T C + FS P + W G E+ VG S YS+
Sbjct: 129 ATPQHTVSFTCESHGFS-PRDITLKWFKNGNELSDFQTNVDPVGESVSYSI--------- 178
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
ST + +R D C V++
Sbjct: 179 HSTAKVVLTREDVHSQVICEVAHVTLQGDP 208
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 9e-17
Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 32/200 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDL 602
P V+V G G+ LLCD + + W+ + + + T+ +L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 603 ---------AGRYYCKASVMGFPEVGAEATVYLKGRPT----------IISHRTQFGIPG 643
G Y C S + + L P ++ + + + G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 644 DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHF 703
+EC A P P+ + W E + S + L I + +
Sbjct: 129 QNVTLECFALGNPVPD-IRWRKVLEPM---PSTAEISTSG-------AVLKIFNIQLEDE 177
Query: 704 GVYNCSVSNPYGSDSVEIML 723
G+Y C N G D + +
Sbjct: 178 GIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 3e-16
Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 28/217 (12%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRV---IDKTGVLQWTKDDFALGPHRNLSGF 76
G + Y + E + G + L C +W ++F + +
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD---K 57
Query: 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP----P 132
R+ + +L I V D Y C VS+ ++ S+F L + P
Sbjct: 58 RRFVSQTNG-----NLYIANVEASDKGNYSCFVSS-PSITKSVFSKFIPLIPIPERTTKP 111
Query: 133 DPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P IV +Y + + LEC A G P +I W + S ++
Sbjct: 112 YPADIVVQFKDVYALMGQNVTLECF-ALGNPVPDIRWRKVLEPMPSTAEISTS------- 163
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ L + + + C+A+N + AR+
Sbjct: 164 ---GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 4e-15
Identities = 34/168 (20%), Positives = 52/168 (30%), Gaps = 25/168 (14%)
Query: 314 RLVEGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAAASATE--------LYLTNITRHQH 364
R+ EG + L C + P + YRW +N+ PV LY+ N+
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEA-SD 77
Query: 365 DSIVKCEVHNDVGKSEDSETLDVT----------YGPRFRARPYSVQVDRGAGVNLLCDV 414
C V + Y + V G V L C
Sbjct: 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137
Query: 415 DGNPAPEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
GNP P+I W + ++ + L + + G Y C+A
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 6e-11
Identities = 24/163 (14%), Positives = 39/163 (23%), Gaps = 40/163 (24%)
Query: 489 GDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSD----------------------DYS 525
G + C + P W + + +YS
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYS 82
Query: 526 --VHNDVGKSEDSETLDVT----------YGPRFRARPYSVQVDRGAGVNLLCDVDGNPA 573
V + Y + V G V L C GNP
Sbjct: 83 CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142
Query: 574 PEITWIHED-----SDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
P+I W + ++ + L + + G Y C+A
Sbjct: 143 PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 42/192 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDL 448
P V+V G G+ LLCD + + W+ + + + T+ +L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 449 ---------AGRYYCKASVMGFPEVGAEATVYLKGRPT----------IISHRTQFGIPG 489
G Y C S + + L P ++ + + + G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 490 DTARVECSAFSIPPPEKVTWSYRGEEI----------------GVGSSDD--YS--VHND 529
+EC A P P+ + W E + + D+ Y N
Sbjct: 129 QNVTLECFALGNPVPD-IRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 530 VGKSEDSETLDV 541
GK + + V
Sbjct: 188 RGKDKHQARIYV 199
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVD 188
+ P PP + E + + L C P W+ V ++D
Sbjct: 7 LDPFPPEERP--EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV--------FITMD 56
Query: 189 GRRTTVKS--TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-------KYAPKVQ 239
RR ++ L + + ++C + + ++ L+ K P
Sbjct: 57 KRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 240 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNIT 293
V + G +V L C A NP RW +P+P+ A S L + NI
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPSTAEISTSGAVLKIFNIQ 173
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 5 TRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQW 60
V S L+ + + Y ++ +D A++G VTL C G ++W
Sbjct: 92 KSVFSKFIPLIPIPERTTKPY-PADIVVQFKDVYALMGQNVTLECFA---LGNPVPDIRW 147
Query: 61 TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110
K + +S L+I+ + L+D+ Y+C+
Sbjct: 148 RKVLEPMPSTAEISTSGA------------VLKIFNIQLEDEGIYECEAE 185
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 643 GDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + C + P W + + V + L I
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT------NGNLYIANVEAS 76
Query: 702 HFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
G Y+C VS+P + SV P P
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIP 105
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-16
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFAL--GPHRNLSGFDRYAMIGSDEEGDY 90
Q+ T V G L CRV + LQW+ + +R ++ + +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW-HEL 71
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
S+ + V L D+ +Y C + T +++ A LTVL P
Sbjct: 72 SISVSDVSLSDEGQYTCSLFTM-----PVKTSKAYLTVLGVP 108
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 2e-16
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 33/235 (14%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
P + + + C +D + W + + N+
Sbjct: 123 PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--------- 173
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIV-- 138
+L ++ ++ Y C V+ G +R T+ V+ P PP I
Sbjct: 174 ---PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230
Query: 139 -QGDTLYTTEDREIELEC---ISANGKPPAEITW-IDGTGTVMSNVRVTEEASVDGRRT- 192
E+ + C S E+ W IDG + VT S+ RT
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE 290
Query: 193 --TVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
T L + E ++ C A++ K A++K V AP+ V +
Sbjct: 291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV-PAPRYTVELAC 344
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 7e-16
Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 34/239 (14%)
Query: 526 VHNDVGKSEDSETLDV----TYGPRFRARPYSVQVDRGAGVNLLCD-----VDGNPAPEI 576
+ N S+ + L+V + P + C + P I
Sbjct: 98 LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI 157
Query: 577 TWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMG---FPEVGAEATVYLKG 628
TW + + V+ NL+ L+ G Y C + + TV + G
Sbjct: 158 TWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217
Query: 629 RPTII---------SHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGVGSSD 676
P H PG+ + C+ + +V W+ G++ + D
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277
Query: 677 DYSV----LEDPLKEGIKSTLIIRESRHDHFGV-YNCSVSNPYGSDSVEIMLKPQKSFP 730
E L I++ + Y C + G + +K + P
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAP 336
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-11
Identities = 41/278 (14%), Positives = 71/278 (25%), Gaps = 51/278 (18%)
Query: 316 VEGTDVRLYCKAEANPSHMKY----------RWYINDQPVPAAASATELYLTNITRHQHD 365
E R+ C + Y WY Q N + D
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79
Query: 366 SIV------------KCEVHNDVGKSEDSETLDV----TYGPRFRARPYSVQVDRGAGVN 409
+ C + N S+ + L+V + P
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 410 LLCD-----VDGNPAPEITWIHE-----DSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM 459
+ C + P ITW + + V+ NL+ L+ G Y C +
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYP 199
Query: 460 G---FPEVGAEATVYLKGRPTII---------SHRTQFGIPGDTARVECSAFSIP---PP 504
+ TV + G P H PG+ + C+ +
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSR 259
Query: 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVT 542
+V W+ G++ + D + + ET
Sbjct: 260 NEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI 297
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 2e-10
Identities = 36/276 (13%), Positives = 68/276 (24%), Gaps = 47/276 (17%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG------------VLQWTKDDFALGPHRNLSGFDRYA 80
+ + C + + L W ++
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV--PPDPPRIV 138
I + L P +L+D Y C + L V+ +
Sbjct: 73 RISKE---KDVLWFRPTLLNDTGNYTCMLR----NTTYCSKVAFPLEVVQKDSCFNSPMK 125
Query: 139 QGDTLYTTEDREIELECIS----ANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
E + C + ITW G + + V E
Sbjct: 126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE---------- 175
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTAD-RTYKVAR-LKLLVKYAPKVQVSVIGSNRL---- 248
L +N +TC + RT+ + R L + V +PK V + +
Sbjct: 176 GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVV 235
Query: 249 ---VEGTDVRLYCKAEANPS---HMKYRWYINDQPV 278
G ++ + C + + W I+ +
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 37/320 (11%), Positives = 69/320 (21%), Gaps = 104/320 (32%)
Query: 249 VEGTDVRLYCKAEANPSHMKY----------RWYINDQPVPAAASATE------------ 286
E R+ C + Y WY Q
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79
Query: 287 -LYLTNITRHQHDS------------IVKCEVQVSVIGSN-------------RLVEGTD 320
L+ +D+ K + V+ + +E
Sbjct: 80 VLWFRPTL--LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGI 137
Query: 321 VRLYC-----KAEANPSHMKYRWYINDQPVPAA----ASATELYLTNITRHQHDS----- 366
R+ C ++ WY+ + L ++
Sbjct: 138 QRITCPNVDGYFPSSVKP-TITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTC 194
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPY--------SVQVDRGAGVNLLCDV---- 414
+V + + T+ V P+ P + + G + + C V
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 415 DGNPAPEITWIHEDSD----------------KVVGNSPNLTLLM----TSDDLAGRYYC 454
+ E+ W + + +L TS+DL Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 455 KAS-VMGFPEVGAEATVYLK 473
A G +K
Sbjct: 315 HARSAKGE----VAKAAKVK 330
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 2e-16
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 21/194 (10%)
Query: 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAG 604
+ ++ V + C ++ +K + T+ AG
Sbjct: 19 ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 605 RYYCKASVMGFPEVGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIPPPE- 659
+C+A + V + G + G+ + C+A +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 660 KVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717
W Y + + D + STL I G+Y C+ S+ +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 718 SVEIML----KPQK 727
+ P +
Sbjct: 198 KNSTFVRVHEDPIE 211
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 5e-11
Identities = 21/199 (10%), Positives = 44/199 (22%), Gaps = 13/199 (6%)
Query: 38 TAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97
T V +PC + + + + G I
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG--------FTIPSY 71
Query: 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-I 156
M+ C+ E + + V + + + ++ L C
Sbjct: 72 MISYAGMVFCEAKIN--DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA 129
Query: 157 SANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK--STLVLTPKKEHHNTTFTCQ 214
+ W + V + K STL + +TC
Sbjct: 130 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 189
Query: 215 AQNTADRTYKVARLKLLVK 233
A + +++
Sbjct: 190 ASSGLMTKKNSTFVRVHED 208
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 6e-07
Identities = 18/172 (10%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
+ +++ + + C+ + ++ + DG R
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSI--SNLNVSLCARYPE--------KRFVPDGNR 57
Query: 192 TTV--KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRL 248
+ K + + C+A+ + + + ++V Y V +S L
Sbjct: 58 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 249 VEGTDVRLYCKAEANPSHM-KYRWYINDQPVPAAASATELYLTNITRHQHDS 299
G + L C A + + W T
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 169
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 16/146 (10%), Positives = 37/146 (25%), Gaps = 15/146 (10%)
Query: 400 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAG 450
+ ++ V + C ++ +K + T+ AG
Sbjct: 19 ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 451 RYYCKASVMGFPEVGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIPPPE- 505
+C+A + V + G + G+ + C+A +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 506 KVTWSYRGEEIGVGSSDDYSVHNDVG 531
W Y + + + G
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSG 163
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Query: 33 EPQDQTAVVGSRVTLPCRVI---DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
VG ++ L C + W + ++ + ++
Sbjct: 111 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 170
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
+L I V D Y C S+G+ + + V P R
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGL-MT---KKNSTFVRVHEDPIEGR 213
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 30/170 (17%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AASATELYLTNITRHQHDSIVKC 370
+ V + C + ++ ++ S + + + +V C
Sbjct: 23 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVFC 81
Query: 371 EVHNDVGKSEDSETLDVTYGPRFR----ARPYSVQVDRGAGVNLLCDVDGNP--APEITW 424
E + + + V G R + + +++ G + L C + W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 425 IHEDSDKVVGNSPNLTLLMTSDDL-----------------AGRYYCKAS 457
+ S N L S G Y C AS
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 3e-15
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQW-TKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ T G +TL C K LQW T F + + + +
Sbjct: 4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
S+ + V L D+ Y+C + ++ ++ + VL
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYSD-----SVSTKEVKVIVLATMKGE 106
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 3e-15
Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 41/204 (20%)
Query: 38 TAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD---------EE 87
G V L C K+ W + S + +D ++
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTE 147
G++ L I + ++D Y C+V + + D ++QG +L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVED-----QKEEVQLLVFGLTANSD-THLLQGQSL---- 115
Query: 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L + + G + TL ++ +
Sbjct: 116 ----TLTL-ESPPGSSPSVQCRSPRGKNIQG----------------GKTLSVSQLELQD 154
Query: 208 NTTFTCQAQNTADRTYKVARLKLL 231
+ T+TC + + +L
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVL 178
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 4e-12
Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 49/187 (26%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 369
+G V L C A S +++ W ++Q + L + +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 370 ------------------CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLL 411
CEV + + + +T + +G + L
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLT 118
Query: 412 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS------------- 457
+ +P + + G L++ + D +G + C
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK-TLSVSQLELQD-SGTWTCTVLQNQKKVEFKIDIV 176
Query: 458 VMGFPEV 464
V+ F +
Sbjct: 177 VLAFQKA 183
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 5e-12
Identities = 29/206 (14%), Positives = 53/206 (25%), Gaps = 56/206 (27%)
Query: 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------------------- 589
V +G V L C + + W + + K++GN
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63
Query: 590 -SPNLTL----LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGD 644
N L L D + Y C+ + V L + T + G
Sbjct: 64 DQGNFPLIIKNLKIED--SDTYICEVE-------DQKEEVQLLVFGLTANSDTHL-LQGQ 113
Query: 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704
+ + + P V S ++ TL + + G
Sbjct: 114 SLTLTLESPPGSSPS-VQCR----------SPRGKNIQG------GKTLSVSQLELQDSG 156
Query: 705 VYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ C+V +I + +F
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVVL-AFQ 181
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 6e-11
Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 68/234 (29%)
Query: 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458
V +G V L C + + W + + K++GN G + K
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ-------------GSFLTKGPS 50
Query: 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518
+ +++ +G +I + D+ C
Sbjct: 51 KLNDRADSRRSLWDQGNFPLIIKNLK---IEDSDTYICEV-------------------- 87
Query: 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 578
+ + + +T + +G + L + +P +
Sbjct: 88 --------EDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLTLTLESPPGSSPSVQC 131
Query: 579 IHEDSDKVVGNSPNLTLL-MTSDDLAGRYYCKAS-------------VMGFPEV 618
+ G L++ + D +G + C V+ F +
Sbjct: 132 RSPRGKNIQGGK-TLSVSQLELQD-SGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 23/194 (11%), Positives = 59/194 (30%), Gaps = 40/194 (20%)
Query: 141 DTLYTTEDREIELECISANGKPPAEITWIDG--------TGTVMSNVRVTEEASVDGRRT 192
+ + +EL C +A+ K + W + G+ ++ D RR+
Sbjct: 3 KVVLGKKGDTVELTC-TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 193 TVKS---TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLV 249
L++ K + T+ C+ ++ + +V L + + +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVED---QKEEVQLLVFGLTANSDTHL--------L 110
Query: 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---------- 299
+G + L ++ + L ++ + DS
Sbjct: 111 QGQSLTLTLESPPGS-SPSVQCRSPRGKNIQGGK--TLSVSQLEL--QDSGTWTCTVLQN 165
Query: 300 --IVKCEVQVSVIG 311
V+ ++ + V+
Sbjct: 166 QKKVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 41/175 (23%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK------ 302
+G V L C A S +++ W ++Q + L + +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 303 ------------------CEVQ------------VSVIGSNRLVEGTDVRLYCKAEANPS 332
CEV+ ++ L++G + L ++
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS- 125
Query: 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387
+ L ++ + Q C V + K E + V
Sbjct: 126 SPSVQCRSPRGKNIQGGK--TLSVSQLEL-QDSGTWTCTVLQNQKKVEFKIDIVV 177
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-15
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 37/197 (18%)
Query: 559 GAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLAGRYYC 608
G+ L V ++ W H SD+V G L + + + G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 609 KAS-------------VMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTAR 647
+ + E AE A + K R ++ G
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ C+ + PPPE V+W + + +D ++ + G + I G Y
Sbjct: 137 LTCNVWGDPPPE-VSWLKNEKALA--QTDHCNLKFE---AGRTAYFTINGVSTADSGKYG 190
Query: 708 CSVSNPYGSDSVEIMLK 724
V N YGS++ + +
Sbjct: 191 LVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 7e-12
Identities = 27/225 (12%), Positives = 62/225 (27%), Gaps = 40/225 (17%)
Query: 31 AMEPQD-QTAVVGSRVTLPCRVIDKTGVLQ--WTKDDFALGPHRNLSGFDRYAMIGSDEE 87
A+ D + + L V L+ W+ + A+ DR +
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS------DRVKTGVTG-- 56
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-------------- 133
L+I +D +Y ++ G + L+ +
Sbjct: 57 EQIWLQINEPTPNDKGKYVMELFDGK-TG---HQKTVDLSGQAYDEAYAEFQRLKQAAIA 112
Query: 134 ---PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
R++ G D + E + + L C + G PP E++W+ + +
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+ + + + +N + + +
Sbjct: 172 R-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 9e-11
Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 53/197 (26%)
Query: 311 GSNRLVEGTDVRLYCKAEANPSH---------MKYRWYINDQPVPAA------ASATELY 355
GS+ + TD+++ AE + +K W N + + + +++
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 356 LTNITR-HQHDS-IVKCEVHNDVGKSEDSETLDV---------------------TYGPR 392
L I +D E+ + + + L
Sbjct: 61 LQ-INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 119
Query: 393 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL---- 448
P V + G +NL C+V G+P PE++W+ +K + + + L +
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN--EKALAQTDHCNLKFEAGRTAYFT 177
Query: 449 --------AGRYYCKAS 457
+G+Y
Sbjct: 178 INGVSTADSGKYGLVVK 194
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 4e-09
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 628 GRPTIISHRT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G +S + + ++ KV WS+ G I SD
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVT--- 55
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
G + L I E + G Y + + + L Q
Sbjct: 56 -GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
P T G + L C V G + W K++ AL D + +
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAQT------DHCNLK-FE 169
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
I V D +Y V G + T++V +P
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVV-KNKYGS---ETSDFTVSVFIP 211
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 28/164 (17%)
Query: 136 RIVQGDTLYTTEDRE-IELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTT 193
+ L E I+L ++ W +G+ + + RV V G
Sbjct: 4 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS-AIRYSDRVK--TGVTGE--- 57
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK------------------LLVKYA 235
+ L + + + + + K L + K
Sbjct: 58 -QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 116
Query: 236 PKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVP 279
+V + + EG + L C +P + W N++ +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDP-PPEVSWLKNEKALA 159
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 405 GAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLTLLMTSDDLAGRYYC 454
G+ L V ++ W H SD+V G L + + + G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 455 KAS-------------VMGFPEVGAE------ATVYLKGRPTIISH--RTQFGIPGDTAR 493
+ + E AE A + K R ++ G
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533
+ C+ + PPPE V+W + + +D ++ + G++
Sbjct: 137 LTCNVWGDPPPE-VSWLKNEKAL--AQTDHCNLKFEAGRT 173
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-15
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 663
Y +S + V + +Y P + + G+ + C F+ P ++W
Sbjct: 1 ATYAAASSAL----VPRGSHMY---APKLQGPVAVYTWEGNQVNITCEVFAYPSA-TISW 52
Query: 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
G+ + + + + S L + + FG YNC+ N G +S+E +L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNT----PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 724 K 724
Sbjct: 109 V 109
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
P G++V + C V + + W +D L S + + +
Sbjct: 24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS----SNYSNIKIYNTP--SASY 77
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
LE+ P +D Y C +G+ S L P P I Q +
Sbjct: 78 LEVTPDSENDFGNYNCTAVN-RIGQ---ESLEFILVQADTPSSPSIDQVEP 124
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----- 438
Y P+ + P +V G VN+ C+V P+ I+W + N N
Sbjct: 13 RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 439 ------LTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK-----GRPTII------- 479
L + S++ G Y C A +G L P+I
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVN----RIGQESLEFILVQADTPSSPSIDQVEPYSS 127
Query: 480 SHRTQFGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSD------------DYS 525
+ + QF P T V + + W + + S + Y+
Sbjct: 128 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 187
Query: 526 V----HNDVGKSEDSETLDVT 542
V N G E S +
Sbjct: 188 VRLAALNGKGLGEISAASEFK 208
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVT 182
A + P++ +YT E ++ + C P A I+W DG + +
Sbjct: 9 ALVPRGSHMYAPKLQGPVAVYTWEGNQVNITC-EVFAYPSATISWFRDG-----QLLPSS 62
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP--KVQV 240
+++ T S L +TP E+ + C A N + L + QV
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
Query: 241 SVIGSN 246
S
Sbjct: 123 EPYSST 128
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----- 592
Y P+ + P +V G VN+ C+V P+ I+W + N N
Sbjct: 13 RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 593 ------LTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
L + S++ G Y C A +G L
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVN----RIGQESLEFILV 109
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 5e-15
Identities = 29/206 (14%), Positives = 55/206 (26%), Gaps = 41/206 (19%)
Query: 33 EPQDQTAVVGSRVTLPCRVI---DKTGVLQWTK--DDFALGPHRN----LSGFDRYAMIG 83
+ +G + L D ++W K D + R D Y +
Sbjct: 5 NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ +L+I + DD Y+ + G+ + F L + P+I
Sbjct: 65 -----NGTLKIKHLKTDDQDIYKVSIYD-TKGKNVLEKIF-DLKIQERVSKPKI------ 111
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
+ L C E+ DG+ + ++
Sbjct: 112 -SWTCINTTLTC-EVMNGTDPELNL-----------------YQDGKHLKLSQRVITHKW 152
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLK 229
+ F C A N + V +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVS 178
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 6e-09
Identities = 30/201 (14%), Positives = 48/201 (23%), Gaps = 54/201 (26%)
Query: 554 VQVDRGAGVNLLCD--VDGNPAPEITWIHEDSDKVVGN----------------SPNLTL 595
G +NL + +I W K + N TL
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 596 LM---TSDDLAGRYYCKASVMGFPEVGAEATVYLK-----GRPTIISHRTQFGIPGDTAR 647
+ +DD Y V E LK +P I
Sbjct: 69 KIKHLKTDD-QDIYKVSIYDTKGKNV-LEKIFDLKIQERVSKPKIS-------WTCINTT 119
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ C + PE + G+ LK +I + +
Sbjct: 120 LTCEVMNGTDPE-LNLYQDGK---------------HLKLS--QRVITHKWTTSLSAKFK 161
Query: 708 CSVSNPYGSDSVEIMLK-PQK 727
C+ N +S + P+K
Sbjct: 162 CTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 11/142 (7%)
Query: 142 TLYTTEDREIELEC-ISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRRTTVKS--T 197
+ ++I L+ +I W ++ R +E + + T
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLY 257
L + K + +T + L ++ + L
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKIS------WTCINTTLT 121
Query: 258 CKAEANPSHMKYRWYINDQPVP 279
C+ + Y + + +
Sbjct: 122 CEVMNGTD-PELNLYQDGKHLK 142
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 413
L + ++ I K +++ GK+ + D+ R +P + L C+
Sbjct: 68 LKIKHLKT-DDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS-KP-KISWT-CINTTLTCE 123
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V PE+ + K + S + + L+ ++ C A
Sbjct: 124 VMNGTDPELNLYQD--GKHLKLSQRVITHKWTTSLSAKFKCTAG 165
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
++Q V + L C+ + Y + + + + + T
Sbjct: 101 KIQERVSKPKISWTCINTTLTCEVMNGTD-PELNLYQDGKHLK---LSQRVITHKWTTSL 156
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVT 388
KC N V K E +
Sbjct: 157 SAKF-KCTAGNKVSKESSVEPVSCP 180
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 27/182 (14%), Positives = 42/182 (23%), Gaps = 49/182 (26%)
Query: 400 VQVDRGAGVNLLCD--VDGNPAPEITWIHEDSDKVVGN----------------SPNLTL 441
G +NL + +I W K + N TL
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 442 LM---TSDDLAGRYYCKASVMGFPEVGAEATVYLK-----GRPTIISHRTQFGIPGDTAR 493
+ +DD Y V E LK +P I
Sbjct: 69 KIKHLKTDD-QDIYKVSIYDTKGKNV-LEKIFDLKIQERVSKPKIS-------WTCINTT 119
Query: 494 VECSAFSIPPPEKVTWSYRGEEIGVGS-----------SDDYS--VHNDVGKSEDSETLD 540
+ C + PE + G+ + + S + N V K E +
Sbjct: 120 LTCEVMNGTDPE-LNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Query: 541 VT 542
Sbjct: 179 CP 180
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 5e-15
Identities = 34/243 (13%), Positives = 58/243 (23%), Gaps = 44/243 (18%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS---- 84
+ G V LPC + W K + G + G
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 85 -----------------DEEGDYSLEIYPVMLDDDARYQCQVST-GILGEPAIRSRFATL 126
+L + V D RY CQV+ I E + ++ L
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 127 TVLVPPDPPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
V + + + E +I + C A +TW G + T +
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFENYETGTYQ 186
Query: 185 ASVDGRRTTVKS---------------TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
+ + + LV+ K C+
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 230 LLV 232
+L
Sbjct: 247 ILK 249
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 5e-11
Identities = 44/267 (16%), Positives = 69/267 (25%), Gaps = 67/267 (25%)
Query: 397 PYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYY 453
V+V G V L C P I+W+ S + L G
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL-GFVE 67
Query: 454 CKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 513
+ F + A+V PT+ P D R C
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVH---PQDGGRYWCQVA-------------- 110
Query: 514 EEIGVGSSDDYSVHNDVGKSEDSETLDVTYG----PRFRARPYSVQVDRGAGVNLLCDVD 569
+S+ + G S L VT + VQVD G + + C
Sbjct: 111 ---------QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161
Query: 570 GNPAPEITWIHEDSDKVVGN----------------------------SPNLTLLMTS-- 599
+TW + S L++ +
Sbjct: 162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAK 221
Query: 600 -DDLAGRYYCKA-SVMGFPEVGAEATV 624
D AGR +C+ + G + +T+
Sbjct: 222 ITD-AGRVWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 6e-11
Identities = 32/238 (13%), Positives = 52/238 (21%), Gaps = 66/238 (27%)
Query: 551 PYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL----- 602
V+V G V L C P I+W+ S + L
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 603 ---------------------------------AGRYYCKAS------VMGFPEVGAEAT 623
GRY+C+ + G
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 624 VYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 680
V + + G+ + C VTW + Y
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN-VTWYTGPTFFENYETGTYQP 187
Query: 681 LEDPLKEGIKS---------------TLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L + + GI L+IR ++ G C ++ G +
Sbjct: 188 LANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 6e-07
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL-----GPHRNLSGFDRYAMIG 83
+ G+ +T+ C D + W G ++ L+ +++ +
Sbjct: 139 HVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITW 198
Query: 84 SDEE--------GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
E G +L I + D R C+++TG GE + T+L
Sbjct: 199 FSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ-GEL---DADRSSTILK 249
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 7e-07
Identities = 39/277 (14%), Positives = 73/277 (26%), Gaps = 76/277 (27%)
Query: 238 VQVSVIGSNRLV-EGTDVRLYCKAEANPSH--MKYRWYINDQPVPAAASATELYLTNITR 294
+ V + V G V L C + W P
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPD---------------- 46
Query: 295 HQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATEL 354
+ + + + + ++++ + ++ V A+ T L
Sbjct: 47 -----------RSTKVFKGNYNWQGEGLGFVESDSYKES--FGDFLGRASVANLAAPT-L 92
Query: 355 YLTNITRHQHDSIVKCEVHN-----DVGKSEDSETLDVTYG----PRFRARPYSVQVDRG 405
LT++ Q C+V + G S L VT + VQVD G
Sbjct: 93 RLTHVHP-QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG 151
Query: 406 AGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------------------------SP 437
+ + C +TW + S
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211
Query: 438 NLTLLMTS---DDLAGRYYCKA-SVMGFPEVGAEATV 470
L++ + D AGR +C+ + G + +T+
Sbjct: 212 ARNLVIRAAKITD-AGRVWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 1e-06
Identities = 43/223 (19%), Positives = 62/223 (27%), Gaps = 41/223 (18%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELEC--ISANGKPPAEITWI-------------- 169
+TV + G T +EL C AN P I+W+
Sbjct: 3 MTVRTTHTEVEVHAGGT--------VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54
Query: 170 ------DGTGTVMSNVRVTEEASVDGRRTTVKS---TLVLTPKKEHHNTTFTCQAQNTAD 220
+G G V S+ GR + TL LT + CQ +
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Query: 221 RT-----YKVARLKLLVKYAPKVQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYIN 274
RT K LK+ V EG D+ + C + WY
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN-ANVTWYTG 173
Query: 275 DQPVPAAASATELYLTNITRHQHDSIV-KCEVQVSVIGSNRLV 316
+ T L N + + + S G+ LV
Sbjct: 174 PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLV 216
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 77.7 bits (190), Expect = 8e-15
Identities = 71/574 (12%), Positives = 142/574 (24%), Gaps = 122/574 (21%)
Query: 34 PQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFAL--------GPHRNLSGFDRYAM 81
P++ +V G+ V++ C +++ W + + + R +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
E G + + I + DD RY+C + R +++ V P +
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGIN------SRGLSFDVSLEVSQGPGLLNDTK 120
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE--EASVDGRRTTVKS--- 196
R + + C + G V + R +
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180
Query: 197 -----TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE- 250
++V+ + + CQA + ++ K A L++L V + GS
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCA 240
Query: 251 -----GTDVRLYCKAEANPSHMKYRWYINDQPVPA-----------AASATELYLTNITR 294
+ C+ + + + PA + + +T + +
Sbjct: 241 LGPEVANVAKFLCRQSSGENC-DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRK 299
Query: 295 ------------------HQHDSIVKCEVQVSVIGSN-----RLVEGTDVRLYCKAEANP 331
+ V + V G+ V + C
Sbjct: 300 EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359
Query: 332 SHMKYRWYINDQPVPAAASAT--------------------------ELYLTNITRHQHD 365
S W + + + L +T D
Sbjct: 360 SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTS--RD 417
Query: 366 S-IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD----GNPAP 420
+ C + D E + P + +V G + + C
Sbjct: 418 AGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG-NVTAVLGETLKVPCHFPCKFSSYEKY 476
Query: 421 EITWIHEDSDKVVG--------------NSPNLTLLMTS---DDLAGRYYCKASVMGFPE 463
W + + NS ++L + D G Y+C F
Sbjct: 477 WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD-EGWYWCGVKQGHFYG 535
Query: 464 VGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 497
A V ++ R S D A E
Sbjct: 536 ETAAVYVAVEERKAAGSRDVS-LAKADAAPDEKV 568
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 76.2 bits (186), Expect = 2e-14
Identities = 58/503 (11%), Positives = 118/503 (23%), Gaps = 100/503 (19%)
Query: 317 EGTDVRLYCKAEANPSH-MKYRWYINDQP----VPAAASATELYLTNITRHQHDSIVK-- 369
G V + C + + K + + ++ Y I +
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185
Query: 370 ----------------CEVHNDVGKSEDSETLDVTYGPRFRARPY---------SVQVDR 404
C+ +D ++ + L V ++ +
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS----------PNLTLLMTS---DDLAGR 451
LC ++ + ++++T +D AGR
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGR 304
Query: 452 YYCKASVMGFPEVGAEATVYLK----GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKV 507
Y C A G + G+ + S G+ G + V C
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIK 364
Query: 508 TWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
W V + S+ + G G +
Sbjct: 365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGR--------------LSLLEEPGNGTFTV-- 408
Query: 568 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627
L L + D AG Y+C + ++
Sbjct: 409 ------------------------ILNQLTSRD--AGFYWCLTNGDTLWRT-TVEIKIIE 441
Query: 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEK---VTWSYRGEEIGVGSSDDYS-VLED 683
G P + + G+T +V C + W+ G + + S +
Sbjct: 442 GEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVN 501
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD---SVEIMLKPQKSFPLLLILTGVIG 740
+ +L + G Y C V + +V + ++ +K+ +
Sbjct: 502 CDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKAD 561
Query: 741 CVVILVALTMVVILCQRKVKKPP 763
L + K + P
Sbjct: 562 AAPDEKVLDSGFREIENKAIQDP 584
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 71.2 bits (173), Expect = 9e-13
Identities = 52/423 (12%), Positives = 101/423 (23%), Gaps = 90/423 (21%)
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+S ++ Y P R R C + ++ + + N T
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGG-CITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 441 LLMTSDDL----AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 496
++ L +GRY C + + +G + + G T + C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 497 SAFSIPPPEKVTWSYRGEEI-------------------------------------GVG 519
+ K Y+ + +
Sbjct: 135 PFKTENAQ-KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 520 SSD--DYS--VHNDVGKSEDSETLDVTYGPRFRARPY---------SVQVDRGAGVNLLC 566
SD Y +D ++ + L V ++ + LC
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 567 DVDGNPAPEITWIHEDSDKVVGNS----------PNLTLLMTS---DDLAGRYYCKASVM 613
++ + ++++T +D AGRY C A
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGRYLCGAHSD 312
Query: 614 GFPEVGAEATVYLK----GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS----- 664
G + G+ + S G+ G + V C W
Sbjct: 313 GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGA 372
Query: 665 ---------YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715
+ S+LE+P T+I+ + G Y C +
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEP--GNGTFTVILNQLTSRDAGFYWCLTNGDTL 430
Query: 716 SDS 718
+
Sbjct: 431 WRT 433
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 53.5 bits (127), Expect = 2e-07
Identities = 29/261 (11%), Positives = 67/261 (25%), Gaps = 27/261 (10%)
Query: 27 EQKFAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFAL----------GPHRNLS 74
E P V GS V + C + + W + A
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 75 GFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R +++ G +++ + + D Y C + T+ + +
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT-------LWRTTVEIKIIEGE 443
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWI----DGTGTVMSNVRVTEEASVDGR 190
P + + +++ C E W G + S +A V+
Sbjct: 444 PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD 503
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVE 250
+ +L L + C + A + + V+ + L +
Sbjct: 504 ENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA-VYVAVEERK---AAGSRDVSLAK 559
Query: 251 GTDVRLYCKAEANPSHMKYRW 271
++ ++ +
Sbjct: 560 ADAAPDEKVLDSGFREIENKA 580
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 7e-07
Identities = 34/251 (13%), Positives = 69/251 (27%), Gaps = 25/251 (9%)
Query: 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 594
+S ++ Y P R R C + ++ + + N T
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGG-CITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 595 LLMTSDDL----AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVEC 650
++ L +GRY C + + +G + + G T + C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 651 SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS-----------TLIIRESR 699
+ K Y+ + D S +P G +++I + R
Sbjct: 135 PFKTENAQ-KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIG------CVVILVALTMVVI 753
G Y C + S+ Q P ++ + C + +
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNA--DLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 754 LCQRKVKKPPP 764
LC++ +
Sbjct: 252 LCRQSSGENCD 262
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 8e-05
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 13/157 (8%)
Query: 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRN 72
+ + + P + TAV+G + +PC K +W P ++
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492
Query: 73 LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ + + SL + V D+ Y C V G A + V V
Sbjct: 493 EGP-SKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY-----GETAAVYVAVEE 546
Query: 133 DPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI 169
+ + + E + +G E I
Sbjct: 547 RKAAGSRDVS--LAKADAAPDEKVLDSGFREIENKAI 581
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 8e-15
Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 48/264 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGF-------- 76
+ VG V + C V + W + +
Sbjct: 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66
Query: 77 ----DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+R ++G D SL + V D+ Y C++ + + + V P
Sbjct: 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRL----KNESMVMKKPVELWVLP 122
Query: 133 DPPRIVQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGT---------------- 174
+ PR ++ ++ C S K ++ W+ +G+
Sbjct: 123 EEPRDLR-----VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 175 --VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
S R + G + ++ L KE +TC + K L ++
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Query: 233 KYAPKVQVSVIGSNRLVEGTDVRL 256
Q ++ + +G L
Sbjct: 238 DEF---QRTISPTPPTDKGQQGIL 258
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 3e-12
Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 57/243 (23%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV---DGNPAPEITWIHEDSDKVVGN------------ 589
P ++V G V + C V + + W+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 590 ---------------SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
+ +LL + D G Y C+ + V + V L P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKAD-EGIYTCEIRLKNESMV-MKKPVELWVLPE 123
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRG-----EEIGVGSSDDYSVLEDP 684
R GDT ++ CS S KV W + EE + + +
Sbjct: 124 E--PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQ 181
Query: 685 LKEGIKS-------------TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPL 731
++ ++ ++ + G+Y CS+ I+L +
Sbjct: 182 SLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241
Query: 732 LLI 734
I
Sbjct: 242 RTI 244
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-06
Identities = 30/192 (15%), Positives = 50/192 (26%), Gaps = 42/192 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV---DGNPAPEITWIHEDSDKVVGN------------ 435
P ++V G V + C V + + W+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 436 ---------------SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
+ +LL + D G Y C+ + V + V L P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKAD-EGIYTCEIRLKNESMV-MKKPVELWVLPE 123
Query: 478 IISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGEEIGVGSSDDYSVHNDVGKSED 535
R GDT ++ CS S KV W + G + ++ + D
Sbjct: 124 E--PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS---GSHTEEETVLSYDSNMRSG 178
Query: 536 SETLDVTYGPRF 547
+ R
Sbjct: 179 KFQSLGRFRNRV 190
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+F +D + G TL C + ++W + L P D+Y++ E
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPG------DKYSL--RQEGA 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L + + D RY C ++ ATLTV P P
Sbjct: 62 MLELVVRNLRPQDSGRYSCSFGD--------QTTSATLTVTALPSGP 100
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
RF+ ++V G L C + AP + W + + DK G L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+GRY C + AT+ + P+ S
Sbjct: 68 RNLRPQDSGRYSCSFG-----DQTTSATLTVTALPSGPS 101
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
RF+ ++V G L C + AP + W + + DK G L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+GRY C + AT+ + P+ S
Sbjct: 68 RNLRPQDSGRYSCSFG-----DQTTSATLTVTALPSGPS 101
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G A + C S+ P V W Y + D YS+ ++ G L++R R
Sbjct: 23 GGAATLRCVLSSVAAP--VKWCYGNNVLR--PGDKYSLRQE----GAMLELVVRNLRPQD 74
Query: 703 FGVYNCSVSN 712
G Y+CS +
Sbjct: 75 SGRYSCSFGD 84
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F M+ + G VT CRV G + W KD + P + I
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRV---AGNPKPKIYWFKDGKQISPK------SDHYTIQR 60
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
D +G SL LDDD Y + G S L V P
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAAN-PQGR---ISCTGRLMVQAVNSGP 107
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 439
P F + ++ G V C V GNP P+I W I SD + +L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 440 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 477
++ D G Y A+ G + + ++ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQG--RISCTGRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV-----GNSPNL 593
P F + ++ G V C V GNP P+I W I SD + +L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 594 TLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPT 631
++ D G Y A+ G + + ++ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQG--RISCTGRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G C P P K+ W G++I SD Y++ D +G +L S D
Sbjct: 23 GMPVTFTCRVAGNPKP-KIYWFKDGKQI-SPKSDHYTIQRDL--DGT-CSLHTTASTLDD 77
Query: 703 FGVYNCSVSNPYGSDSVEIML 723
G Y +NP G S L
Sbjct: 78 DGNYTIMAANPQGRISCTGRL 98
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F P D T G + C+V +G+ L W D + P D +
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKV---SGLPTPDLSWQLDGKPVRP-------DSAHKMLV 60
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
E G +SL I PV D Y C ++T G+ S L V P
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTC-IATNRAGQ---NSFSLELVVAAKESGP 107
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-KVVGNSPNLTLLM 443
P F P + V G + C V G P P+++W + DS K++ + L+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 444 ----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
TS D AG Y C A+ G + + + + + S
Sbjct: 70 IEPVTSRD-AGIYTCIATNRAG--QNSFSLELVVAAKESGPS 108
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSD-KVVGNSPNLTLLM 597
P F P + V G + C V G P P+++W + DS K++ + L+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 598 ----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
TS D AG Y C A+ G + + + + + S
Sbjct: 70 IEPVTSRD-AGIYTCIATNRAG--QNSFSLELVVAAKESGPS 108
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
RP + G R++C +P P+ ++W G+ + + +L E
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVR--PDSAHKMLVR---E 62
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LII G+Y C +N G +S + L
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P +Q L E + ++C +G P +++W V + +G
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV-- 65
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+L++ P +TC A N A + L + K +
Sbjct: 66 ---HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 3e-14
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 31/199 (15%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFAL-------GPHRNLSGFDRYAMIGS 84
P ++G VTLP +K + W ++ +L + +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
+ YSL++ + ++D Y+ Q+ST + S TL +L ++ L+
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTK--TSAKLSSY--TLRILRQLRNIQVTNHSQLF 120
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK- 203
E+ L C + W G + + L ++
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRW-----------------EALGNTLSSQPNLTVSWDP 163
Query: 204 KEHHNTTFTCQAQNTADRT 222
+ +TC A+N
Sbjct: 164 RISSEQDYTCIAENAVSNL 182
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 25/203 (12%), Positives = 49/203 (24%), Gaps = 45/203 (22%)
Query: 551 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGN-------------------- 589
P V G V L + G ITW+ ++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 590 --SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGA--EATVYLKGRPTIISHRTQFGIP 642
+ + +L + +D G Y + S ++ + + + +H F
Sbjct: 65 NFTQSYSLQLSNLKMED-TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ CS W G + + + + R
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPN----------------LTVSWDPRISS 167
Query: 703 FGVYNCSVSNPYGSDSVEIMLKP 725
Y C N + S + +
Sbjct: 168 EQDYTCIAENAVSNLSFSVSAQK 190
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 1e-06
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 18/181 (9%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVM---------SNVRVTEEA 185
P +V G + L G+ ITW+ ++ + VT
Sbjct: 5 PLMVNG-----ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPK 59
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGS 245
T +L L+ K ++ Q L +++ +QV+
Sbjct: 60 QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTL-RILRQLRNIQVTNHSQ 118
Query: 246 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 305
++ L C E ++ +RW + S L ++ R + C
Sbjct: 119 LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---SQPNLTVSWDPRISSEQDYTCIA 175
Query: 306 Q 306
+
Sbjct: 176 E 176
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
+QV+ ++ L C E ++ +RW + S L ++ R
Sbjct: 110 NIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---SQPNLTVSWDPRIS 166
Query: 364 HDSIVKCEVHNDVGKSEDSETLDVT 388
+ C N V S S ++
Sbjct: 167 SEQDYTCIAENAV--SNLSFSVSAQ 189
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 5e-14
Identities = 23/190 (12%), Positives = 48/190 (25%), Gaps = 29/190 (15%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD-- 89
++P+ G + L C P G + + G
Sbjct: 7 LQPRVAFVERGGSLWLNCSTN---------------CPRPERGGLETSLRRNGTQRGLRW 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+ ++ + + + + C + PD ++
Sbjct: 52 LARQLVDI-REPETQPVCFFRCA----RRTLQARGLIRTFQRPDRVELMPLPPWQP-VGE 105
Query: 150 EIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH 207
L C P A +T + G + E T + ++E H
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRG-AQELIRRSFAGEPPRARGAV---LTATVLARREDH 161
Query: 208 NTTFTCQAQN 217
F+C+A+
Sbjct: 162 GANFSCRAEL 171
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD--DLAGR 605
+P V+RG + L C + D + +
Sbjct: 6 DLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQ 65
Query: 606 YYCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C + + + + + G+ + C P +T +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT 125
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
RG + E P G T + R DH ++C + +
Sbjct: 126 LLRGAQE---LIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGL 180
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 14/127 (11%), Positives = 30/127 (23%), Gaps = 4/127 (3%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD--DLAGR 451
+P V+RG + L C + D + +
Sbjct: 6 DLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQ 65
Query: 452 YYCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C + + + + + G+ + C P +T +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT 125
Query: 511 -YRGEEI 516
RG +
Sbjct: 126 LLRGAQE 132
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 6e-14
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ +D TA G RV L C V + ++W K+ + P RY + E
Sbjct: 9 MVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK----SRYRI--RVEGK 62
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ L I D A Y + G A L+V + P
Sbjct: 63 KHILIIEGATKADAAEYSVMTTGG--------QSSAKLSVDLKSGPS 101
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ +EC S V W GEEI G Y + + G K LII +
Sbjct: 22 GERVELECEV-SEDDAN-VKWFKNGEEIIPGPKSRYRIRVE----GKKHILIIEGATKAD 75
Query: 703 FGVYNCSVSN 712
Y+ +
Sbjct: 76 AAEYSVMTTG 85
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 7e-14
Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 32/206 (15%)
Query: 38 TAVVGSRVTLPCRVIDKTG----VLQWTKD--------------DFALGPHRNLSGFDRY 79
TA +G RVTL + + W K D FD +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+ L + + D Y C++ G ++ L+V+ P V
Sbjct: 62 -----RSANTFFLVVTAANISHDGNYLCRMKLG----ETEVTKQEHLSVVKPLTL--SVH 110
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
+ + + + C + N P + W+ G + + + S V
Sbjct: 111 SERSQFPDFSVLTVTC-TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL--SVAV 167
Query: 200 LTPKKEHHNTTFTCQAQNTADRTYKV 225
+ + TC +N + + V
Sbjct: 168 DLSLPKPWHLPVTCVGKNDKEEAHGV 193
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 4e-13
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 536 SETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 590
S V+ GP F+ P QV G ++ P IH N+
Sbjct: 13 SYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRS-----ANT 66
Query: 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 649
L + + G Y C+ +G EV + + + T+ H V
Sbjct: 67 FFLVVTAANISHDGNYLCRMK-LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 650 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709
C+ + P P V W ++ + V+++ +G S + C
Sbjct: 126 CTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMKEK--DGSLSVAVDLSLPKPWHLPVTCV 182
Query: 710 VSNPYGS 716
N
Sbjct: 183 GKNDKEE 189
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 7e-12
Identities = 20/160 (12%), Positives = 40/160 (25%), Gaps = 23/160 (14%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
V + P + + + A+ L +T HD C
Sbjct: 34 GEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-------ANTFFLVVTAANI-SHDGNYLCR 85
Query: 372 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--- 428
+ + E L V Q + + + C V+ P P + W+ +
Sbjct: 86 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
Query: 429 -----SDKVVGNSPNLTLLM------TSDDLAGRYYCKAS 457
++ V + +L + C
Sbjct: 146 PAPTAANGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGK 184
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 16/156 (10%)
Query: 382 SETLDVTYGPR-----FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS 436
S V+ GP F+ P QV G ++ P IH N+
Sbjct: 13 SYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRS-----ANT 66
Query: 437 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVE 495
L + + G Y C+ +G EV + + + T+ H V
Sbjct: 67 FFLVVTAANISHDGNYLCRMK-LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDD--YSVHND 529
C+ + P P V W ++ + D
Sbjct: 126 CTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMKEKD 160
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-08
Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-- 582
+ + E L V Q + + + C V+ P P + W+ +
Sbjct: 85 RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144
Query: 583 ------SDKVVGNSPNLTLLM------TSDDLAGRYYCKAS 611
++ V + +L + C
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGK 184
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 17/145 (11%)
Query: 149 REIELECI--SANGKPPAEITWI--------DGTGTVMSNVRVTEE---ASVDGRRTTVK 195
+ L + P E++W G + +V E D R+
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVR 255
LV+T H+ + C+ + K L ++ P ++ + + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSERSQFPDFSVLT 123
Query: 256 LYCKAEANPSHMKYRWYINDQPVPA 280
+ C A P +W + + PA
Sbjct: 124 VTCTVNAFPHP-HVQWLMPEGVEPA 147
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 17/86 (19%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
++ + S +T+ C V +QW + +G
Sbjct: 106 TLSVHSERSQFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVEPAPTAANG--GVMK--- 157
Query: 85 DEEGDYSLEI---YPVMLDDDARYQC 107
E D SL + + C
Sbjct: 158 --EKDGSLSVAVDLSLPKPWHLPVTC 181
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-13
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
KF +++ A G+ L C + K ++W K L DR+++ +
Sbjct: 21 KFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRDG------DRHSL--RQDGA 71
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L+I ++ +D Y C A LTV P P
Sbjct: 72 RCELQIRGLVAEDAGEYLCMCGKE--------RTSAMLTVRAMPSGP 110
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 374 NDVGKSEDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---- 428
+ S L V +F + + GA L C++ + W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59
Query: 429 -SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
D+ G L + + AG Y C + A + ++ P+ S
Sbjct: 60 DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCG-----KERTSAMLTVRAMPSGPS 111
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 528 NDVGKSEDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---- 582
+ S L V +F + + GA L C++ + W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59
Query: 583 -SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
D+ G L + + AG Y C + A + ++ P+ S
Sbjct: 60 DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCG-----KERTSAMLTVRAMPSGPS 111
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 620 AEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
A + ++ P + R + G TA + C + P V W E + D
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP---VEWWKGHETLR--DGDR 63
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+S+ +D G + L IR + G Y C S + + P
Sbjct: 64 HSLRQD----GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMPSG 109
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-13
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 17/109 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F +PQ + + G V L C++ + + L W +++ + + +
Sbjct: 17 MFIYKPQSKKVLEGDSVKLECQI---SAIPPPKLFWKRNNEMVQFN------TDRISLYQ 67
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
D G +L I V D Y + G + L V P+
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTV-SAVNEAGV---TTCNTRLDVTARPN 112
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 376 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDS 429
+G + + P F +P S +V G V L C + P P++ W + ++
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Query: 430 DKV---VGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII 479
D++ N+ +TLL + D AG Y A G + + RP
Sbjct: 61 DRISLYQDNTGRVTLLIKDVNKKD-AGWYTVSAVNEAG--VTTCNTRLDVTARPNQT 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 530 VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDS 583
+G + + P F +P S +V G V L C + P P++ W + ++
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Query: 584 DKV---VGNSPNLTLL---MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTII 633
D++ N+ +TLL + D AG Y A G + + RP
Sbjct: 61 DRISLYQDNTGRVTLLIKDVNKKD-AGWYTVSAVNEAG--VTTCNTRLDVTARPNQT 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 6e-10
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 641 IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
+ GD+ ++EC +IPPP K+ W E + ++D S+ +D + TL+I++
Sbjct: 28 LEGDSVKLECQISAIPPP-KLFWKRNNEMVQF-NTDRISLYQD---NTGRVTLLIKDVNK 82
Query: 701 DHFGVYNCSVSNPYGSDSVEIML----KPQKSFP 730
G Y S N G + L +P ++ P
Sbjct: 83 KDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 121 SRFATLTVLVPPD---PPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVM 176
+ P P+ + E ++LEC + PP ++ W +
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKK-----VLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQF 58
Query: 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+ R++ GR TL++ + +T A N A T RL V P
Sbjct: 59 NTDRISLYQDNTGR-----VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD--VTARP 111
Query: 237 K 237
Sbjct: 112 N 112
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+DQ VG RV + V ++ + W K+ L + RY +
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKA--RYRF--KKDGK 65
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ L V+ +D RYQ + G A L V
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGG--------QCEAELIV 97
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
I++ Q GD + S + V W G E+ D + K+G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQ-VMWMKNGVELT--REDSFKARYRFKKDG 64
Query: 689 IKSTLIIRESRHDHFGVYNCSVSN 712
+ LI + + G Y +
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG 88
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-13
Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVL--QWTKDDFAL-----------GPHRNLSGFDRYA 80
+ VVG VTLPC G+ W + G RY
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 81 MIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PR 136
+ G EGD SL I + D Y C+V + T ++ V P+ PR
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIP----GWFNDQKVTFSLQVKPELVPR 116
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+DQ G V L C + + W KD A+ +Y ++ E
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKS------QKYDVV--CEGT 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L I L D Y C+V A+L V P
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEAS-KST-------ASLHVEEKASGP 100
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
II Q+ PG+ + C P V W + I S Y V+ + G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIR--KSQKYDVVCE----G 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
+ L+IR + G Y C V + S+ + K
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASG 99
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
V G V L C++ P + W+ + S K G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
S AG Y C+ + A+++++ + +
Sbjct: 68 RGASLKDAGEYTCEVE-----ASKSTASLHVEEKAS 98
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
V G V L C++ P + W+ + S K G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
S AG Y C+ + A+++++ + +
Sbjct: 68 RGASLKDAGEYTCEVE-----ASKSTASLHVEEKAS 98
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F D V GS C+V G + W KDD + R+ I
Sbjct: 43 YFTKTILDMEVVEGSAARFDCKV---EGYPDPEVMWFKDDNPVKE-------SRHFQIDY 92
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
DEEG+ SL I V DDDA+Y C + LGE A L V
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTC-KAVNSLGE--ATCT-AELLVETMGKEGEGEGE---- 144
Query: 145 TTEDREIELE 154
ED E E E
Sbjct: 145 GEEDEEEEEE 154
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 367 IVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
I +V N+ E+ P F ++V G+ C V+G P PE+ W
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 427 EDSDKVVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATVYLK 473
+ D V S + + + +Y CKA +G E A + ++
Sbjct: 78 D--DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTAELLVE 133
Query: 474 GRPTI 478
Sbjct: 134 TMGKE 138
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 8e-09
Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 603 AGRYYCKA-------SVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFS 654
+G + F E AE ++K P + G AR +C
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEEKPHVK--PYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 655 IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714
P P +V W + S + + D E +L I E D Y C N
Sbjct: 68 YPDP-EVMWFKDDNPVK--ESRHFQIDYD---EEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 715 GSDSVEIMLK 724
G + L
Sbjct: 122 GEATCTAELL 131
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 17/120 (14%)
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
V N+ E+ P F ++V G+ C V+G P PE+ W + D
Sbjct: 23 VENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD--DN 80
Query: 586 VVGNSPNLTLLMTSDDL------------AGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
V S + + + +Y CKA +G E A + ++
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTAELLVETMGKE 138
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 16/147 (10%)
Query: 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD---PPRIVQGDTLYTTEDRE 150
+ + + + E A A V P + E
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTIL-----DMEVVEGSA 58
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
+C G P E+ W V + + +G +L ++ +
Sbjct: 59 ARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN-----CSLTISEVCGDDDAK 112
Query: 211 FTCQAQNTADRTYKVARLKLLVKYAPK 237
+TC+A N+ +LLV+ K
Sbjct: 113 YTCKAVNSLGEA--TCTAELLVETMGK 137
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 1e-12
Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 34/235 (14%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGV------LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
M Q + VT+ C + + + W L + + F+ +
Sbjct: 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKS--LTFDKEVKVFEFFGDHQEA 65
Query: 86 ------------EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
+ GD SL + + L++ Y+C+V P L V+ P
Sbjct: 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT----PLKAQGTVQLEVVASPA 121
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRT 192
++ + ++ E + C S+ P A ITW T + ++E+
Sbjct: 122 SRLLLDQVGM---KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIK 178
Query: 193 ------TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
V S L L +E T + C ++ + T + L +
Sbjct: 179 NMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETE 233
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSA--FSIPPPEK 660
AG Y C+ V + + + P Q G+ + + C + F P
Sbjct: 94 AGEYRCEVVVTPL-KAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFY-PEAIN 151
Query: 661 VTWSYRGEEIGVGSS-DDYSVLEDPLKEG-----IKSTLIIRESRHDHFGVYNCSVSNP 713
+TW + ++ + + +K + S L + S+ D VY C V +
Sbjct: 152 ITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-12
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ T RV L C + W KD + + + + + L
Sbjct: 16 DKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEES------ELLVV--KMDGRKHRL 67
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ + D ++C+ S F +TV P P
Sbjct: 68 ILPEAKVQDSGEFECRTEG--------VSAFFGVTVQDPSGPS 102
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 7e-06
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
+ + C S TW G+++ S+ V D G K LI+ E++
Sbjct: 24 TSERVVLTCEL-SRVDFP-ATWYKDGQKVE--ESELLVVKMD----GRKHRLILPEAKVQ 75
Query: 702 HFGVYNCSVSN 712
G + C
Sbjct: 76 DSGEFECRTEG 86
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-12
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+F + + + A G+ TL C + K ++W K L RY++ +
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDG------GRYSL--KQDGT 60
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
L+I+ + + D Y C ATLTV P R +G
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQ--------ERTSATLTVRAL--PARFTEG 102
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
RF + + GA L C++ + + W + G L +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
S AG Y C + AT+ ++ P + +
Sbjct: 67 HDLSVADAGEYSCMCG-----QERTSATLTVRALPARFTEGSG 104
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
RF + + GA L C++ + + W + G L +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
S AG Y C + AT+ ++ P + +
Sbjct: 67 HDLSVADAGEYSCMCG-----QERTSATLTVRALPARFTEGSG 104
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G TA ++C + V W E + YS+ +D G + L I +
Sbjct: 23 GATATLQCE---LSKVAPVEWKKGPETLR--DGGRYSLKQD----GTRCELQIHDLSVAD 73
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727
G Y+C S ++ + P +
Sbjct: 74 AGEYSCMCGQERTSATLTVRALPAR 98
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ P V G V L C+V P+P+I W+ + + SP L L G
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQG 70
Query: 451 RYYCKAS-VMGFPEVGAEATV 470
Y C A+ P+ ++
Sbjct: 71 TYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+ P V G V L C+V P+P+I W+ + + SP L L G
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQG 70
Query: 605 RYYCKAS-VMGFPEVGAEATV 624
Y C A+ P+ ++
Sbjct: 71 TYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-10
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 26/107 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP+ G VTL C V + W KD L
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEV---PAQPSPQIHWMKDGVPLPL--------------- 53
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
L + + D Y C + G SR +++++ P
Sbjct: 54 --PPSPVLILPEIGPQDQGTYSCVATHSSHGPQE--SRAVSISIIEP 96
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-07
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
G+ + L ++ PG T + C + P P ++ W G + + S
Sbjct: 1 GSSGSSGL-EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLPLPPS-- 56
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
LI+ E G Y+C ++
Sbjct: 57 -------------PVLILPEIGPQDQGTYSCVATHSSHGPQE 85
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHND 375
G V L C+ A PS + W + P+P S L L I Q C +
Sbjct: 23 APGGTVTLTCEVPAQPS-PQIHWMKDGVPLPLPPSPV-LILPEIGP-QDQGTYSCVATHS 79
Query: 376 VGKSEDSETLDVT 388
++S + ++
Sbjct: 80 SHGPQESRAVSIS 92
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 2e-12
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 26/188 (13%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ P+ + + C + G + +E
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTT---------------CNQPEVGGLETSLNKILLDEQAQW 51
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
+ D QC + S + ++V PP + TL +
Sbjct: 52 KHYLVSNISHDTVLQCHFTCS----GKQESMNSNVSVYQPPRQVILTLQPTLVA-VGKSF 106
Query: 152 ELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209
+EC +P + G + + A +T T +E +
Sbjct: 107 TIECRVPTVEPLDSLTLFLFRG-NETLHYETFGKAAPAPQ---EATATFNSTADREDGHR 162
Query: 210 TFTCQAQN 217
F+C A
Sbjct: 163 NFSCLAVL 170
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-09
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 6/177 (3%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRY 606
RP + V+ + + C N + ++ + S+
Sbjct: 6 HVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVL 65
Query: 607 YCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS- 664
C + G + + +VY R I++ + G + +EC ++ P + +T
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL 125
Query: 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
+RG E + + +T R D ++C S I
Sbjct: 126 FRGNETLHYETFGKAAPAPQEAT---ATFNSTADREDGHRNFSCLAVLDLMSRGGNI 179
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRY 452
RP + V+ + + C N + ++ + S+
Sbjct: 6 HVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVL 65
Query: 453 YCKASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS- 510
C + G + + +VY R I++ + G + +EC ++ P + +T
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL 125
Query: 511 YRGEEI 516
+RG E
Sbjct: 126 FRGNET 131
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ AV RV L C + ++WTKD + + E+
Sbjct: 15 VYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVES------PALLL--QKEDT 66
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
L + V L+D Y C++ S T+TV P P RI+
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD--------ESASFTVTVTEP--PVRIIY 107
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
+ + C P E V W+ GEE+ S + KE L++ + +
Sbjct: 28 LERVVLTCEL-CRPWAE-VRWTKDGEEVV--ESPALLLQ----KEDTVRRLVLPAVQLED 79
Query: 703 FGVYNCSVSN 712
G Y C + +
Sbjct: 80 SGEYLCEIDD 89
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 379 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV 433
S S DV+ + + V R V L C++ P E+ W +S ++
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 434 ----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484
L L + +G Y C+ + A TV + P I +
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEID-----DESASFTVTVTEPPVRIIYSGP 110
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 533 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV 587
S S DV+ + + V R V L C++ P E+ W +S ++
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 588 ----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 638
L L + +G Y C+ + A TV + P I +
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEID-----DESASFTVTVTEPPVRIIYSGP 110
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
PTI + + + P P + W Y G + S + +
Sbjct: 5 PTIT--FLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAIL-NESKYICTKIHVTNHTEY 60
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + H + G Y N YG D +I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P I T D + + G P + W G +++ + T
Sbjct: 4 APTITF--LESPTSDHHWCIPF-TVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTE 59
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238
L L +N +T A+N + K P +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH--FMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------DKVVG 434
V + P + + V GNP P + W + +
Sbjct: 1 VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 435 NSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 478
+ L + T + G Y A G + + + + G P I
Sbjct: 58 TEYHGCLQLDNPTHMN-NGDYTLIAKNEYG--KDEKQISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------DKVVG 588
V + P + + V GNP P + W + +
Sbjct: 1 VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 589 NSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
+ L + T + G Y A G + + + + G P I
Sbjct: 58 TEYHGCLQLDNPTHMN-NGDYTLIAKNEYG--KDEKQISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 14/101 (13%)
Query: 37 QTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
++ +P V G LQW + L + + + E L
Sbjct: 11 ESPTSDHHWCIPFTV---KGNPKPALQWFYNGAILNESKY---ICTKIHVTNHTEYHGCL 64
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
++ ++ Y G+ + + + P
Sbjct: 65 QLDNPTHMNNGDYTLIAKN-EYGK---DEKQISAHFMGWPG 101
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+E + G + L CR+ D + W +D L +R + G
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAES------NRTRITGE---- 54
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPP 135
+E+ + D Y C S+ G + + ++ V P P
Sbjct: 55 --EVEVQDSVPADSGLYACVTSSP-SGSD---TTYFSVNVSDALPSGP 96
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
PGD ++ C + W G ++ S+ + + +++S
Sbjct: 17 PGDLLQLRCRLRDDVQS--INWLRDGVQLA--ESNRTRI--------TGEEVEVQDSVPA 64
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
G+Y C S+P GSD+ +
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSV 86
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVVGNSPNLTLLMTS 445
S V G + L C + + I W+ +S++ + + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 446 DDLAGRYYCKAS 457
+G Y C S
Sbjct: 63 PADSGLYACVTS 74
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVVGNSPNLTLLMTS 599
S V G + L C + + I W+ +S++ + + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 600 DDLAGRYYCKAS 611
+G Y C S
Sbjct: 63 PADSGLYACVTS 74
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
F+ +P+ GS ++W + + ++Y + + E
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISAS------NKYGL--ATEG 60
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
++L + V D Y + L V
Sbjct: 61 TRHTLTVREVGPADQGSYAVIAGSS--------KVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G A E + V W G +I +S+ Y + + G + TL +RE
Sbjct: 23 GSPAVFEAET-ERAGVK-VRWQRGGSDIS--ASNKYGLATE----GTRHTLTVREVGPAD 74
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y GS V+ LK
Sbjct: 75 QGSYAVIA----GSSKVKFDLK 92
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
F +P SV+V G+ + + ++ W S+K G LT+
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 442 LMTSDDLAGRYYCKA 456
G Y A
Sbjct: 68 REVGPADQGSYAVIA 82
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
F +P SV+V G+ + + ++ W S+K G LT+
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 596 LMTSDDLAGRYYCKA 610
G Y A
Sbjct: 68 REVGPADQGSYAVIA 82
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+F P++ + G + +V +G+ + W + + D +
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKV---SGLPAPDVSWYLNGRTVQS-------DDLHKMIV 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
E+G +SL V D Y C V+ GE + L VL
Sbjct: 57 SEKGLHSLIFEVVRASDAGAYAC-VAKNRAGE---ATFTVQLDVLA 98
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-09
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I G R++ +P P+ V+W G + S D + ++ E
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTVQ--SDDLHKMIVS---EK 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LI R G Y C N G + + L
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
PRF P ++ +D G + V G PAP+++W + V + ++++ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN--GRTVQSDDLHKMIVSEKGLHS 63
Query: 449 ----------AGRYYCKAS 457
AG Y C A
Sbjct: 64 LIFEVVRASDAGAYACVAK 82
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
PRF P ++ +D G + V G PAP+++W + V + ++++ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN--GRTVQSDDLHKMIVSEKGLHS 63
Query: 603 ----------AGRYYCKAS 611
AG Y C A
Sbjct: 64 LIFEVVRASDAGAYACVAK 82
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
PPR +Q + + E R ++ +G P +++W TV S+ S G
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDF-KVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL-- 61
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
+L+ + + C A+N A +L +L K
Sbjct: 62 ---HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-12
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G + C + +VTW + ++ +S+ Y + + + L +++
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLE--NSEKYEITYE----DGVAILYVKDITKLD 69
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C V N YG DS L
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELF 91
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ + G V C++ D++ + W R L ++Y + + E+
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGV------RQLENSEKYEI--TYED 55
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
G L + + DD Y+C+V GE S +A L V
Sbjct: 56 GVAILYVKDITKLDDGTYRCKVVN-DYGE---DSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-05
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQHDS- 366
EG V+ CK E + WY + + + LY+ +IT + D
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT--KLDDG 71
Query: 367 IVKCEVHNDVGKSEDSETLDV 387
+C+V ND G+ L V
Sbjct: 72 TYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLM----- 443
G + + G V +C ++ ++TW + + NS +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG--VRQLENSEKYEITYEDGVA 58
Query: 444 -------TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
T D G Y CK G E + A +++KG
Sbjct: 59 ILYVKDITKLD-DGTYRCKVVNDYG--EDSSYAELFVKGVR 96
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLM----- 597
G + + G V +C ++ ++TW + + NS +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG--VRQLENSEKYEITYEDGVA 58
Query: 598 -------TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
T D G Y CK G E + A +++KG
Sbjct: 59 ILYVKDITKLD-DGTYRCKVVNDYG--EDSSYAELFVKGVR 96
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 6e-12
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
K DQT +G + L C + + +WTK+ + DR + +
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPG-KWTKNGLPVQES------DRLKV--VQKGR 59
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ L I + +D+ Y + + A + V+ P
Sbjct: 60 IHKLVIANALTEDEGDYVFAPDAYNV------TLPAKVHVISGP 97
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G ++C P W+ G + SD V++ G L+I + +
Sbjct: 22 GKEICLKCEISENIP---GKWTKNGLPVQ--ESDRLKVVQK----GRIHKLVIANALTED 72
Query: 703 FGVYNCSVSNPYGSDSVE 720
G Y + + +
Sbjct: 73 EGDYVFAPDAYNVTLPAK 90
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 6e-12
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
++QT +G + + C +G + W KD+ L +
Sbjct: 12 TITGNLENQTTSIGESIEVSCTA---SGNPPPQIMWFKDN------ETLVEDSGIVL--- 59
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
++G+ +L I V +D+ Y CQ +LG A + + +
Sbjct: 60 -KDGNRNLTIRRVRKEDEGLYTCQA-CSVLGC---AKVEAFFIIEGAQEKTNL 107
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPN 438
T+ P + G + + C GNP P+I W ++ +V N
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 439 LTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 478
L + +D G Y C+A V+G EA ++G
Sbjct: 64 RNLTIRRVRKED-EGLYTCQACSVLG--CAKVEAFFIIEGAQEK 104
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPN 592
T+ P + G + + C GNP P+I W ++ +V N
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 593 LTLLMTS---DDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTI 632
L + +D G Y C+A V+G EA ++G
Sbjct: 64 RNLTIRRVRKED-EGLYTCQACSVLG--CAKVEAFFIIEGAQEK 104
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 621 EATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 679
+ TV + PTI + Q G++ V C+A PPP+ + W E +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWFKDNETLV--EDSGIV 58
Query: 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + L IR R + G+Y C + G VE
Sbjct: 59 LKDG------NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 126 LTVLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
LTVL P I + T+ IE+ C +A+G PP +I W T++ + + +
Sbjct: 3 LTVLERV-APTITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
L + ++ +TCQA + A ++ A +
Sbjct: 61 DGN--------RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI--IEGAQE 103
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 16/107 (14%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
F E + C+ + W K L ++ S E
Sbjct: 10 CFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGL------LELRASGKHQP--SQEGL 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L I + D Y C + +SR A L V P
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQ-------AQSR-AQLLVQGRRSGP 100
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
F ++QV+ C +PA +TW S K G + LT+
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+ Y C + + A + ++GR + S
Sbjct: 68 SALEKADSDTYTCDIG-----QAQSRAQLLVQGRRSGPS 101
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
F ++QV+ C +PA +TW S K G + LT+
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+ Y C + + A + ++GR + S
Sbjct: 68 SALEKADSDTYTCDIG-----QAQSRAQLLVQGRRSGPS 101
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
TA C P VTW E+ +S + ++ G
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAAT-VTWRKGLLELR--ASGKHQPSQE----G 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+ L I Y C + +++++ ++S P
Sbjct: 61 LTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRRSGP 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P+DQ G V L +V TG W K + + + +
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKV---TGTQPITCTWMKFR------KQIQESEHMKV--E 57
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ E L I + Y V LG R LTV+ PDPP
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVEN-KLGS---RQAQVNLTVVDKPDPP 104
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P II Q G++ + P TW ++I S+ V
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQ--ESEHMKVENS----E 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L I +R +H G Y V N GS ++ L
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+ P +V G V L V G TW I E V NS N + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
+ G Y +G A+ + + +P
Sbjct: 68 LAARQEH-CGCYTLLVENKLG--SRQAQVNLTVVDKP 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+ P +V G V L V G TW I E V NS N + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
+ G Y +G A+ + + +P
Sbjct: 68 LAARQEH-CGCYTLLVENKLG--SRQAQVNLTVVDKP 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P+I+Q + +EL G P TW+ + + + E S +G
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQIQESEHMKVENSENG--- 62
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
S L + ++ H +T +N L ++ K P
Sbjct: 63 ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 32/190 (16%), Positives = 49/190 (25%), Gaps = 33/190 (17%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALGPHRNLSGFDRYAMIGSDEEGDYS 91
Q VV VT + W K A + F + + S
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI 151
L IY + D+ Y+ + +F L VL P I E
Sbjct: 62 LTIYNLTSSDEDEYEMESPNI-----TDTMKF-FLYVLEMVSKPMI-------YWECSNA 108
Query: 152 ELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211
L C G E+ G + S ++ + + F
Sbjct: 109 TLTCEVLEG-TDVELKLYQGKEHLRSL-----------------RQKTMSYQWTNLRAPF 150
Query: 212 TCQAQNTADR 221
C+A N +
Sbjct: 151 KCKAVNRVSQ 160
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRY 79
GS + + + D T + C V D+ +W K+ + P R
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPS------KRI 54
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ S + L I V +D+ Y L S A L L
Sbjct: 55 TI--SHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL------SLSAKLNFLEIK 99
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685
G+ ++ + A +C S W G E+ S ++
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVT-GKWYKNGVEVR--PSKRITISHV-- 59
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
G L+I + R + G Y S S ++ K
Sbjct: 60 --GRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIK 99
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 9/76 (11%), Positives = 15/76 (19%), Gaps = 10/76 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
+ V C+V W S ++ G L +
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 442 LMTSDDLAGRYYCKAS 457
+ G Y
Sbjct: 68 DDVRPEDEGDYTFVPD 83
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 9/76 (11%), Positives = 15/76 (19%), Gaps = 10/76 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
+ V C+V W S ++ G L +
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 596 LMTSDDLAGRYYCKAS 611
+ G Y
Sbjct: 68 DDVRPEDEGDYTFVPD 83
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
QD T S + TG WTKD A+ +Y +
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKA---TGEPRPTAIWTKDGKAITQGG------KYKLS-- 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+++G + LEI+ D Y C G S LT+
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTC-TVKNSAGS---VSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I++ + A+ A P P W+ G+ I Y + ED
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWTKDGKAIT--QGGKYKLSED---- 58
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L I ++ G+Y C+V N GS S L
Sbjct: 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 12/91 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P V + G P P W I + + L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 444 ---TSDDLAGRYYCKAS-VMGFPEVGAEATV 470
+ D +G Y C G + T+
Sbjct: 67 HKTDTSD-SGLYTCTVKNSAGSVSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 12/91 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P V + G P P W I + + L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 598 ---TSDDLAGRYYCKAS-VMGFPEVGAEATV 624
+ D +G Y C G + T+
Sbjct: 67 HKTDTSD-SGLYTCTVKNSAGSVSSSCKLTI 96
|
| >2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-11
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDD----------FALGPHRNLSGFDRY 79
P+ T V + C G ++W + G H + +
Sbjct: 8 PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGR 67
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGIL-GEPAIRSRFATLTV 128
+ GD SL+I + +DD Y C+V+ G IR + L V
Sbjct: 68 LKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +P+ T G C G + W + L R+ + +
Sbjct: 16 RILTKPRSMTVYEGESARFSCDT---DGEPVPTVTWLRKGQVLSTS------ARHQV--T 64
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + EI V D+ Y V G+ + TLT+
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSV-VVENSEGK---QEAEFTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 440
+ T R +P S+ V G CD DG P P +TW+ + +V+ S
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK--GQVLSTSARHQ 62
Query: 441 LLMTSDDL-----------AGRYYCKAS 457
+ T G Y
Sbjct: 63 VTTTKYKSTFEISSVQASDEGNYSVVVE 90
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLT 594
+ T R +P S+ V G CD DG P P +TW+ + +V+ S
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK--GQVLSTSARHQ 62
Query: 595 LLMTSDDL-----------AGRYYCKAS 611
+ T G Y
Sbjct: 63 VTTTKYKSTFEISSVQASDEGNYSVVVE 90
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
I++ R+ G++AR C P P VTW +G+ + +S + V
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPT-VTWLRKGQVLS--TSARHQVTTT----K 67
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727
KST I + G Y+ V N G E L QK
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
RI+ ++ E C +G+P +TW+ + ++ R +
Sbjct: 14 AARILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK--- 69
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
ST ++ + ++ +N+ + L
Sbjct: 70 ---STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSG 75
GS P +QT V L C TG + W KD +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVA---TGSPVPTILWRKDGVLVSTQD---- 53
Query: 76 FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
R + + L+I L D RY C ST GE + A + V P
Sbjct: 54 -SRIKQLENG-----VLQIRYAKLGDTGRYTCIAST-PSGE---ATWSAYIEVQEFGVPV 103
Query: 136 R 136
+
Sbjct: 104 Q 104
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 9e-10
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I Q T + C A P P + W G + LE+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPT-ILWRKDGVLV-STQDSRIKQLEN----- 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L IR ++ G Y C S P G + +
Sbjct: 62 --GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS-----PNLTL---- 441
P R P + V L C G+P P I W + +S N L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
D GRY C AS G E A + ++ +
Sbjct: 69 AKLGD--TGRYTCIASTPSG--EATWSAYIEVQEFGVPVQ 104
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS-----PNLTL---- 595
P R P + V L C G+P P I W + +S N L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
D GRY C AS G E A + ++ +
Sbjct: 69 AKLGD--TGRYTCIASTPSG--EATWSAYIEVQEFGVPVQ 104
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 134 PPRIVQGDTLYT-TEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGRR 191
PP I QG T D L C A G P I W DG + R+ + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDSRIKQLEN----- 61
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
L + K +TC A + A +++ P
Sbjct: 62 ----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/118 (13%), Positives = 28/118 (23%), Gaps = 18/118 (15%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFD 77
GS + + G + C + + WT +G
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS------S 54
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
R+ + + Y L + D V + A+L V P
Sbjct: 55 RFQA--TRQGRKYILVVREAAPSDAGEVVFSVRG--------LTSKASLIVRERSGPS 102
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G++ EC + W+ G+ +G SS + G K L++RE+
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVG--SSSRFQATRQ----GRKYILVVREAAPSD 76
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQKS 728
G SV S+ + + S
Sbjct: 77 AGEVVFSVRGLTSKASLIVRERSGPS 102
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLT 440
R +++V G + C + + + W S + G L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
+ + AG + ++A++ ++ R S
Sbjct: 69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGPSS 103
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIH-----EDSDKVV----GNSPNLT 594
R +++V G + C + + + W S + G L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
+ + AG + ++A++ ++ R S
Sbjct: 69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGPSS 103
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 4e-11
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P ++S +E PPP + W + G+ + S V E
Sbjct: 9 PRVVSLEE--PELRLEHCIEFVVRGNPPPT-LHWLHNGQPLR--ESKIIHVEYYQEGEIS 63
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L+ + H + G Y NP G+ + I
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-07
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEE 184
LTV PP R+V E +E G PP + W+ +G + + + E
Sbjct: 3 LTVYYPP---RVVS--LEEPELRLEHCIEF-VVRGNPPPTLHWLHNGQ-PLRESKIIHVE 55
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244
+G + L+ ++N +T A+N + L + P +VS
Sbjct: 56 YYQEGEISE--GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV------ 433
L V Y PR + + V GNP P + W+H S +
Sbjct: 3 LTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 434 GNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 480
G LL T + G Y A +G + P +
Sbjct: 60 GEISEGCLLFNKPTHYN-NGNYTLIAKNPLG--TANQTINGHFLKEPFPVD 107
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV------ 587
L V Y PR + + V GNP P + W+H S +
Sbjct: 3 LTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 588 GNSPNLTLLM---TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIIS 634
G LL T + G Y A +G + P +
Sbjct: 60 GEISEGCLLFNKPTHYN-NGNYTLIAKNPLG--TANQTINGHFLKEPFPVD 107
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ + P P+ V W+ G + + V + +R++
Sbjct: 39 GEQLNLVVPFQGKPRPQ-VVWTKGGAPL---DTSRVHVRTSDFD----TVFFVRQAARSD 90
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y SV D+ I ++
Sbjct: 91 SGEYELSVQIENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 391 PRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKV-VGNSPNLTLL 442
P+ R + + G +NL+ G P P++ W D+ +V V S T+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 443 M----TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
D +G Y + E AT+ ++
Sbjct: 82 FVRQAARSD-SGEYELSVQI----ENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 545 PRFRARPY---SVQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKV-VGNSPNLTLL 596
P+ R + + G +NL+ G P P++ W D+ +V V S T+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 597 M----TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
D +G Y + E AT+ ++
Sbjct: 82 FVRQAARSD-SGEYELSVQI----ENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 20/103 (19%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
Q VG ++ L G + WTK L R + SD D
Sbjct: 31 RQTYIRKVGEQLNLVVPF---QGKPRPQVVWTKGGAPLDT-------SRVHVRTSD--FD 78
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ D Y+ V + + + V+
Sbjct: 79 TVFFVRQAARSDSGEYELSVQI-ENMK---DTATIRIRVVEKA 117
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-11
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 39/196 (19%)
Query: 33 EPQDQTAVVGSRVTLPCR---VIDKTGVLQWTKDDFALGPHRNLSGF----DRYAMIGSD 85
+ +G + L + D ++W + + + + ++
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-- 59
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
+ L+I + DD Y V + G + L +L P I
Sbjct: 60 ---NGDLKIKNLTRDDSGTYNVTVYSTN-GTRILNKAL-DLRILEMVSKPMI-------Y 107
Query: 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE 205
E L C E+ ++ +
Sbjct: 108 WECSNATLTC-EVLEGTDVELKL-----------------YQGKEHLRSLRQKTMSYQWT 149
Query: 206 HHNTTFTCQAQNTADR 221
+ F C+A N +
Sbjct: 150 NLRAPFKCKAVNRVSQ 165
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-08
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 354 LYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 413
L + N+TR V++ G ++ LD+ + + L C+
Sbjct: 63 LKIKNLTR-DDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLTCE 118
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V E+ + + + T+ +L + CKA
Sbjct: 119 VLEGTDVELKLYQG--KEHLRSLRQKTMSYQWTNLRAPFKCKAV 160
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 12/149 (8%)
Query: 159 NGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQN 217
E+ W G+ V R + G + + L + + T+ +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 218 TADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 277
T L L + V +I E ++ L C+ ++ + Y +
Sbjct: 83 TNGTRILNKALDL--RILEMVSKPMI----YWECSNATLTCEVLEGT-DVELKLYQGKEH 135
Query: 278 VPAAASATELYLTNITRHQHDSIVKCEVQ 306
+ S + ++ + KC+
Sbjct: 136 LR---SLRQKTMSYQWTNLRAPF-KCKAV 160
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-07
Identities = 24/187 (12%), Positives = 44/187 (23%), Gaps = 41/187 (21%)
Query: 551 PYSVQVDRGAGVNLLCDV--DGNPAPEITWIHEDS--------------DKVVGNSPNLT 594
+V G G+NL + E+ W + N
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 595 LL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 651
L +T DD +G Y + + L+ + A + C
Sbjct: 63 LKIKNLTRDD-SGTYNVTVYSTNGTRI-LNKALDLRILEMVSKPMIY--WECSNATLTCE 118
Query: 652 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711
E + E L+ + T+ + + + C
Sbjct: 119 VLEGTDVE-LKLYQGKE---------------HLRSLRQKTMSYQWTNLR--APFKCKAV 160
Query: 712 NPYGSDS 718
N +S
Sbjct: 161 NRVSQES 167
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 585
V++ G ++ LD+ + + L C+V E+ +
Sbjct: 80 VYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLTCEVLEGTDVELKLYQG--KE 134
Query: 586 VVGNSPNLTLLMTSDDLAGRYYCKAS 611
+ + T+ +L + CKA
Sbjct: 135 HLRSLRQKTMSYQWTNLRAPFKCKAV 160
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHND 375
E ++ L C+ ++ + Y + + S + ++ + KC+ N
Sbjct: 108 WECSNATLTCEVLEGT-DVELKLYQGKEHLR---SLRQKTMSYQWTNLRAPF-KCKAVNR 162
Query: 376 VGKSEDSETLDVT 388
V + + E ++
Sbjct: 163 VSQESEMEVVNCP 175
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 5e-11
Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 24/213 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE---- 87
E + V L + G W K + M + +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 88 ----GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL 143
+ SL + + D Y ++ V P P + +T
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYR---RTQATVRFHVHQPVTQPFLQVTNT- 120
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
E + L C+S A I W+ + ++ R+T S + L + P
Sbjct: 121 TVKELDSVTLTCLS--NDIGANIQWLFNSQSLQLTERMT--LSQNNS------ILRIDPI 170
Query: 204 KEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
K + C+ N + +KL + + P
Sbjct: 171 KREDAGEYQCEISNPVSVR-RSNSIKLDIIFDP 202
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-09
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ ++ + T VTL C D +QW + ++L +R + ++
Sbjct: 112 QPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFN------SQSLQLTERMTLSQNNS-- 163
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137
L I P+ +D YQC++S + RS L ++ P
Sbjct: 164 --ILRIDPIKREDAGEYQCEISNPV---SVRRSNSIKLDIIFDPHHHHH 207
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 8e-09
Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 36/196 (18%)
Query: 555 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----------------------SP 591
QV V LL W ++ +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 592 NLTLLM---TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 648
N +LL T D G Y + + A ++ T + + V
Sbjct: 70 NGSLLFQMITMKD-MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 649 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708
+ S + W + + + + ++ ++ ++ S L I + + G Y C
Sbjct: 129 TLTCLSNDIGANIQWLFNSQSLQL--TERMTLSQN------NSILRIDPIKREDAGEYQC 180
Query: 709 SVSNPYGS-DSVEIML 723
+SNP S I L
Sbjct: 181 EISNPVSVRRSNSIKL 196
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 1e-07
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 30/186 (16%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDG---------TGTVMSN 178
V + PP++ + + + L W G V ++
Sbjct: 2 VTIEAVPPQVAEDN--------NVLLLV-HNLPLALGAFAWYKGNTTAIDKEIARFVPNS 52
Query: 179 VRVTEEASVDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237
+ GR + +L+ +T + R + + + +
Sbjct: 53 NMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQ 112
Query: 238 VQVSVIGSNRLV-EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLT 290
+ V +N V E V L C + ++ +W N Q + T L +
Sbjct: 113 PFLQV--TNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRID 168
Query: 291 NITRHQ 296
I R
Sbjct: 169 PIKRED 174
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 32/198 (16%), Positives = 50/198 (25%), Gaps = 56/198 (28%)
Query: 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------------------SA 284
E +V L + WY + S
Sbjct: 12 AEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 285 TELYLTNITR-----------HQHDSIVKCEVQVSVIG---------SNRLV-EGTDVRL 323
L IT ++ + V+ V +N V E V L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 324 YCKAEANPSHMKYRWYINDQPVPAAASAT------ELYLTNITRHQHDSIVKCEVHNDVG 377
C + ++ +W N Q + T L + I R CE+ N V
Sbjct: 131 TCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ-CEISNPVS 187
Query: 378 KSE-DSETLDVTYGPRFR 394
+S LD+ + P
Sbjct: 188 VRRSNSIKLDIIFDPHHH 205
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 26/197 (13%), Positives = 47/197 (23%), Gaps = 50/197 (25%)
Query: 401 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----------------------SP 437
QV V LL W ++ +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 438 NLTLLM---TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 494
N +LL T D G Y + + A ++ T + + V
Sbjct: 70 NGSLLFQMITMKD-MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 495 ECSAFSIPPPEKVTWSYRGEEI------------------GVGSSD--DYS--VHNDVGK 532
+ S + W + + + + D +Y + N V
Sbjct: 129 TLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 533 SE-DSETLDVTYGPRFR 548
+S LD+ + P
Sbjct: 189 RRSNSIKLDIIFDPHHH 205
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 5e-11
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVL---QWTKDDFALGPHRNLSGFDRYAMIGS--DEEG 88
+ +A G + L C + T + W + D L G+
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136
L + + ++D Y C T G + L VL
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDG---TYTGRIFLEVLESSVAEH 114
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 640 GIPGDTARVECSAFSIPPPE--KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS----TL 693
G + ++C S + +V W + + + + ++D + K+ + L
Sbjct: 15 AEKGGSIILQCH-LSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 694 IIRESRHDHFGVYNCSVS-NPYGSDSVEIMLK 724
++ + G Y C P G+ + I L+
Sbjct: 74 TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-11
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F + DQ+ G V + RV G V+ W ++ + P D+
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRV---QGEPKPVVSWLRNRQPVRP-------DQRRFAEE 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E G L I D Y C+ G R A L V
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCKAVN-EYGA---RQCEARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G + P P V+W + + ++ + G L I +
Sbjct: 20 GQDVIMSIRVQGEPKP-VVSWLRNRQPV-RPDQRRFAEEAE----GGLCRLRILAAERGD 73
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C N YG+ E L+
Sbjct: 74 AGFYTCKAVNEYGARQCEARLE 95
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-08
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV----GNSPNLT 440
P F+ V G V + V G P P ++W + D + G L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+L AG Y CKA G EA + ++G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYG--ARQCEARLEVRG 98
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-08
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV----GNSPNLT 594
P F+ V G V + V G P P ++W + D + G L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 595 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 628
+L AG Y CKA G EA + ++G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYG--ARQCEARLEVRG 98
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-11
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 629 RPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I++ + I G T +E P P TW+ + + V
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAA--LAPELLVDAK---- 54
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ ++ G Y V N G D +
Sbjct: 55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 443
P+ +++ G NL D G P P TW + +V + T +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 444 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
D +G Y K E+G EA +
Sbjct: 63 PSAKRAD-SGNYKLKVKN----ELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLM- 597
P+ +++ G NL D G P P TW + +V + T +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 598 ---TSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
D +G Y K E+G EA +
Sbjct: 63 PSAKRAD-SGNYKLKVKN----ELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 15/104 (14%), Positives = 23/104 (22%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
K + G L G WT D + +
Sbjct: 4 KILTASRKIKIKAGFTHNLEVDF---IGAPDPTATWTVGD------SGAALAPELLV--D 52
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ S+ D Y+ +V LGE + V
Sbjct: 53 AKSSTTSIFFPSAKRADSGNYKLKVKN-ELGE---DEAIFEVIV 92
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 29/200 (14%), Positives = 50/200 (25%), Gaps = 49/200 (24%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-------------DKTGVLQWTKDDFALGPHRNLSGFDRY 79
+ A+ GS VTL +L++ + DR
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK--DRV 62
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
+ ++ +L IY V +D Y ++ + I T+ V P I
Sbjct: 63 DLDKTN----GALRIYNVSKEDRGDYYMRMLHETEDQWKI-----TMEVYEMVSKPMI-- 111
Query: 140 GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLV 199
E L C G E+
Sbjct: 112 -----YWECSNATLTCEVLEG-TDVELKL-----------------YQGKEHLRSLRQKT 148
Query: 200 LTPKKEHHNTTFTCQAQNTA 219
++ + + F C+A N
Sbjct: 149 MSYQWTNLRAPFKCKAVNRV 168
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 32/164 (19%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE---------------------L 354
+ G++V L S+ + W L
Sbjct: 12 ITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGAL 71
Query: 355 YLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG-VNLLCD 413
+ N+++ + + ++ + + T++V + L C+
Sbjct: 72 RIYNVSK-EDRGDYYMRMLHE-TEDQWKITMEVY------EMVSKPMIYWECSNATLTCE 123
Query: 414 VDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
V E+ + + + T+ +L + CKA
Sbjct: 124 VLEGTDVELKLYQG--KEHLRSLRQKTMSYQWTNLRAPFKCKAV 165
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 27/193 (13%), Positives = 50/193 (25%), Gaps = 51/193 (26%)
Query: 551 PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG--------------------N 589
+V G+ V L +TW+H + K++ +
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 590 SPNLTLL---MTSDDLAGRYYCKASVMGFPEVGAEATVYLK-GRPTIISHRTQFGIPGDT 645
N L ++ +D G YY + + VY +P I
Sbjct: 66 KTNGALRIYNVSKED-RGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWE-------CSN 117
Query: 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705
A + C E + E L+ + T+ + +
Sbjct: 118 ATLTCEVLEGTDVE-LKLYQGKE---------------HLRSLRQKTMSYQWTNLR--AP 159
Query: 706 YNCSVSNPYGSDS 718
+ C N +S
Sbjct: 160 FKCKAVNRVSQES 172
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ +D GS T CR+ + W D L + + + +
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN------ELNEID-AQPG 67
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
G + L + + L D + + A L V P
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGD--------QRASAALRVTEKP 104
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV-----GNSPNLT 440
V V G+ C + + W ++ G LT
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 480
L + +G Y +A + A A + + +P++ S
Sbjct: 74 LRQLALKDSGTIYFEAG-----DQRASAALRVTEKPSVFS 108
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV-----GNSPNLT 594
V V G+ C + + W ++ G LT
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634
L + +G Y +A + A A + + +P++ S
Sbjct: 74 LRQLALKDSGTIYFEAG-----DQRASAALRVTEKPSVFS 108
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 6/70 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A C V W + +++ + G L +R+
Sbjct: 28 GSSATFRCRISPANYEP-VHWFLDKTPLH--ANELNEIDAQ---PGGYHVLTLRQLALKD 81
Query: 703 FGVYNCSVSN 712
G +
Sbjct: 82 SGTIYFEAGD 91
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 30 FAMEPQDQTAV-VGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
FA V G RV + D ++W K+ + P +Y +
Sbjct: 10 FAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPS------TKYIF--EHKGC 61
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
L I + DD+ Y L V P
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGD--------EKCSTELFVRSGP 97
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G R + P E V W G+EI S Y G + L I +
Sbjct: 23 GGRVRFVVEL-ADPKLE-VKWYKNGQEIR--PSTKYIFEHK----GCQRILFINNCQMTD 74
Query: 703 FGVYNCSVSN 712
Y + +
Sbjct: 75 DSEYYVTAGD 84
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 390 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNL 439
G F + + QVD+G V + ++ +P E+ W S K + G L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 477
+ YY A + ++++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAG-----DEKCSTELFVRSGPS 98
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 544 GPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNL 593
G F + + QVD+G V + ++ +P E+ W S K + G L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT 631
+ YY A + ++++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAG-----DEKCSTELFVRSGPS 98
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 1e-10
Identities = 32/196 (16%), Positives = 49/196 (25%), Gaps = 42/196 (21%)
Query: 553 SVQVDR-GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTS--DDLAGRYYCK 609
V + V L CD A ITW + + S D G Y CK
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 610 AS-----------VMGFPEVGAEATVYLKGRPTIISHRT----------------QFGIP 642
S MG + + + + + I
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G T + C + P ++ W + + IG D + S +
Sbjct: 128 GTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNI------GSDEDHLSLKEFSELEQ 178
Query: 703 FGVYNCSVSNPYGSDS 718
G Y C D+
Sbjct: 179 SGYYVCYPRGSKPEDA 194
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 36/161 (22%)
Query: 399 SVQVDR-GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTS--DDLAGRYYCK 455
V + V L CD A ITW + + S D G Y CK
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 456 AS-----------VMGFPEVGAEATVYLKGRPTIISHRT----------------QFGIP 488
S MG + + + + + I
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHND 529
G T + C P ++ W + + IG D ++
Sbjct: 128 GTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE 165
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 31/198 (15%), Positives = 50/198 (25%), Gaps = 50/198 (25%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
E V L C AEA W+ + + + + + + +C+ +
Sbjct: 17 EDGSVLLTCDAEAKN----ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNK 72
Query: 377 GKSED------------SETLDVTYGPRFRARPYSVQVDR---------------GAGVN 409
K + + A+ + G V
Sbjct: 73 SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVI 132
Query: 410 LLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMTS----DDLAGRYYCKASVM 459
L C P EI W I D D S L + + +G Y C
Sbjct: 133 LTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ-SGYYVCYPR-- 187
Query: 460 GFPEVG--AEATVYLKGR 475
A +YL+ R
Sbjct: 188 --GSKPEDANFYLYLRAR 203
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 16/100 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ VG + + QW L + ++
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAAS------PDCEI--IEDGK 58
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ L ++ L Q + A L V
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANT--------KSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+TA E S P W +G+ + +S D ++ED G K LI+ +
Sbjct: 20 GETAHFEIE-LSEPDVH-GQWKLKGQPLA--ASPDCEIIED----GKKHILILHNCQLGM 71
Query: 703 FGVYNCSVSN 712
G + +N
Sbjct: 72 TGEVSFQAAN 81
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 441
Y V+V G + ++ P W + S G L L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 442 LMTSDDLAGRYYCKA 456
+ G +A
Sbjct: 65 HNCQLGMTGEVSFQA 79
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVV----GNSPNLTL 595
Y V+V G + ++ P W + S G L L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 596 LMTSDDLAGRYYCKA 610
+ G +A
Sbjct: 65 HNCQLGMTGEVSFQA 79
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-10
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I+ Q TA ++C A P P ++W G G ++ E
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPV-ISWLKEGFTF-PGRDPRATIQEQ----- 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL I+ R G Y C ++ G S +L
Sbjct: 62 --GTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 20 GSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSG 75
GS P +QT V L C+ TG + W K+ F
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKA---TGDPLPVISWLKEGFTFPGRD---- 53
Query: 76 FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
R + +L+I + + D Y C ++ GE S A L V
Sbjct: 54 -PRATIQEQG-----TLQIKNLRISDTGTYTCVATSS-SGE---TSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-------- 442
P P + + L C G+P P I+W+ + G P T+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIK 67
Query: 443 -MTSDDLAGRYYCKAS 457
+ D G Y C A+
Sbjct: 68 NLRISD-TGTYTCVAT 82
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLL-------- 596
P P + + L C G+P P I+W+ + G P T+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIK 67
Query: 597 -MTSDDLAGRYYCKAS 611
+ D G Y C A+
Sbjct: 68 NLRISD-TGTYTCVAT 82
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 128 VLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
PP I+QG D L+C A G P I+W+ T
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGR-------- 52
Query: 187 VDGRRTTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
D R T + TL + + T+TC A +++ T A L
Sbjct: 53 -DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 34 PQDQTAVVGSRVTLPCRV----IDKTGVLQ--WTKDDFA---------LGPHRNLSGFDR 78
P +G VTLPC + ++ T V Q W + + GP + S
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 79 YAMIGSDEE-GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+ E + SL ++ + ++D+ Y C T G RS L VL P
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQG---SRSVDIWLRVLAKP 118
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-10
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 38 TAVVGSRVTLPCRVIDKTG---VLQWTKDDFAL-----------GPHRNLSGFDRYAMIG 83
+G VTLPC + + + W K G +Y ++G
Sbjct: 7 IGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLG 66
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVST 111
+ G+ SL I D Y C++
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCCRIEV 94
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
+ P S ++ G+ + L C G+P P W + + + G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 451 RYYCKAS 457
Y+C
Sbjct: 64 TYWCHVY 70
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
+ P S ++ G+ + L C G+P P W + + + G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 605 RYYCKAS 611
Y+C
Sbjct: 64 TYWCHVY 70
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+ I +Q +PG T ++C A P P W ++ E PL
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH-YQW-FKNEL--------------PLTH 46
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYG---SDSVEIMLKPQKSF 729
K ++ +H G Y C V N S VEI++ +
Sbjct: 47 ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 27/109 (24%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ +EP Q + GS + L C G QW K++ L
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVA---VGSPIPHYQWFKNELPL----------------- 44
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
E + V L+ Y C V S+ + + +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY-NDRDS--QDSKKVEIIIDELNN 90
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN 374
L+ G+ + L C A +P Y+W+ N+ P+ + + +H C V+N
Sbjct: 15 LMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL-EHQGTYWCHVYN 71
Query: 375 DVGKSEDSETLDVT 388
D S+DS+ +++
Sbjct: 72 DRD-SQDSKKVEII 84
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294
L+ G+ + L C A +P Y+W+ N+ P+ + +
Sbjct: 15 LMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKKL-YMVPYVDL 59
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-10
Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 24/248 (9%)
Query: 312 SNRLVEGTDVRLYCKAEAN---PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 368
+ G L + PS++ Y W +DQP + L + + T S
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSENAGSY- 67
Query: 369 KCEVHNDVGKSE-DSETLDVTYGPR--FRARPYSVQVDRGAGVNLLCDVD---GNPAPEI 422
K V + + +SE + P V V L V G +
Sbjct: 68 KVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADN 127
Query: 423 TWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 479
+H + V+ + ++T+ + D G Y K + A A+ + +
Sbjct: 128 YELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG-ESEDSAASASTKIMLATMNV 186
Query: 480 SHRTQFGI---PGDTARVECSAFSIPPPE-----KVTWSYRGEEIGVGSSDDYSVHNDVG 531
G+ + + +T Y G + ++VG
Sbjct: 187 DQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVG 246
Query: 532 KSEDSETL 539
++ + ++
Sbjct: 247 EALEGFSI 254
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 35/264 (13%), Positives = 70/264 (26%), Gaps = 52/264 (19%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVL-----QWTKDDFALGPHRNLSGFDRYAMIGS 84
+++ + + G TL V + WTKDD
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------------- 47
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
E +L + ++ Y+ V + I + Y
Sbjct: 48 -ENNTATLTVADATSENAGSYKVTV-QDTDTM--TSVESEVFLMEEAELIVNITEPQHFY 103
Query: 145 TTEDREIELEC--ISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTP 202
+ ++EL + GK PA+ + S + +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYEL------------HYSWSKGEDVIDTTQDITIQE 151
Query: 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAE 261
N +T + ++ + A + A V V+ S + G ++ L
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASAS--TKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 262 AN---------PSHMKYRWYINDQ 276
+ +KY WY+ +
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQRE 233
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 36/299 (12%), Positives = 73/299 (24%), Gaps = 42/299 (14%)
Query: 476 PTIISH-RTQFGIPGDTARVECSAFSIPPPEK---VTWSYRGEEIGVGSSD--------- 522
T+ + + GD + + P TW+ + ++
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSE 62
Query: 523 ---DYSVH--NDVGKSE-DSETLDVTYGPR--FRARPYSVQVDRGAGVNLLCDVD---GN 571
Y V + + +SE + P V V L V G
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGK 122
Query: 572 PAPEITWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628
+ +H + V+ + ++T+ + D G Y K + A A+ +
Sbjct: 123 TPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG-ESEDSAASASTKIML 181
Query: 629 RPTIISHRTQFGI---PGDTARVECSAFSI---------PPPEKVTWSYRGEEIGVGSSD 676
+ G+ + K W + E +
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 677 DYSVLEDPLKEGIKS--TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLL 733
V E I L + +D + C + + + S +
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSM 300
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 59/279 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGN-PAPE---ITWIHEDSDKVVGNSPNLTLLMTSD 446
+ G G L V G+ P P TW D N+ LT+ +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTATLTVADATS 61
Query: 447 DLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISHRT--QFGIPGDTARVECS---AFS 500
+ AG Y V +E + + + + + + +
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG 121
Query: 501 IPPPEKVTWSY---RGEEIGVGSSD------------DYS--VHNDVGKSEDSETLDVTY 543
P + Y +GE++ + D Y+ V + S S + +
Sbjct: 122 KTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181
Query: 544 GPRFRARPY----------SVQVDRGAGVNLLCDVDGNPAPEITWI-------------- 579
+ + ++ +++ D G P I +
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 580 ---HEDSDKVVGNSPNLTLLM---TSDDLAGRYYCKASV 612
++ + +P+ L T DD +++C A +
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDD-TAKFWCVAKL 279
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 36/170 (21%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE---ITWIDGTGTVMSNVRVTE 183
TV + + + GD L A +P TW
Sbjct: 4 TVSIQSNKRCFLAGDG--------FTLTATVAGDEPLPSNLTYTW--------------- 40
Query: 184 EASVDGRR-TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV 242
+ D + +TL + + ++ Q+T T + + L+ + V ++
Sbjct: 41 --TKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITE 98
Query: 243 IGSNRLVEGTDVRLYCKAE-------ANPSHMKYRWYINDQPVPAAASAT 285
+ TDV L+ + A+ + Y W + + T
Sbjct: 99 PQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT 148
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN 435
S + + P F + V G L C V G P P ITW I
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG 62
Query: 436 SPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 471
L + + G Y C A +G A TV+
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 536 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGN 589
S + + P F + V G L C V G P P ITW I
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG 62
Query: 590 SPNLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVY 625
L + + G Y C A +G A TV+
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
F+ +D + G L C V G + W + + R+ +
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQCSV---RGTPVPRITWLLNGQPIQYARS-----------T 58
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E G L I + +D Y C ++ LG+ + A +TV
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTC-LAENALGQ--VSCS-AWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-07
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDD 677
G+ + ++ P+ S + I G ++CS P P ++TW G+ I
Sbjct: 1 GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPI---QYAR 56
Query: 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ + L I+++ + G Y C N G S +
Sbjct: 57 STCEAG------VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE-----LYLTNITRHQHDS-IVK 369
+EG D L C P + W +N QP+ A S E L++ + D
Sbjct: 24 IEGQDFVLQCSVRGTP-VPRITWLLNGQPIQYARSTCEAGVAELHIQDAL--PEDHGTYT 80
Query: 370 CEVHNDVGKSEDSETLDV 387
C N +G+ S + V
Sbjct: 81 CLAENALGQVSCSAWVTV 98
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 629 RPTIISHRTQ--FGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDDYSVLEDPL 685
R I + Q F G T + C A PPP + W S R + S+ +V D
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL +R ++ G Y C +N G+DS+ L
Sbjct: 441 -----GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 375 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG 434
D + V VD G V +C DG+P P I W+ +V
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHLVS 428
Query: 435 NSPN----------LTLLMTSDDLAGRYYCKAS 457
N L + G Y C A+
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 529 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG 588
D + V VD G V +C DG+P P I W+ +V
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHLVS 428
Query: 589 NSPN----------LTLLMTSDDLAGRYYCKAS 611
N L + G Y C A+
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 133 DPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
RI + ++ E ++ C A+G PP I W+ ++S
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSA--------KSNG 433
Query: 191 RTTVKS--TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
R TV TL + + N T+ C A N A L
Sbjct: 434 RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-10
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 14/86 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
K Q QT GS RV G +W K+ +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRV---VGKPDPECEWYKNGVKIER-------SDRIYWYW 56
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVS 110
E+ L I V +D A +
Sbjct: 57 PEDNVCELVIRDVTGEDSASIMVKAI 82
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-09
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 448
P+ R S V +G+ + V G P PE W + S + D++
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN--GVKIERSDRIYWYWPEDNVCE 63
Query: 449 ----------AGRYYCKAS-VMGFPEVGAEATVYLKGR 475
+ KA + G E + A + ++ +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG--ETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-09
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDL-- 602
P+ R S V +G+ + V G P PE W + S + D++
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN--GVKIERSDRIYWYWPEDNVCE 63
Query: 603 ----------AGRYYCKAS-VMGFPEVGAEATVYLKGR 629
+ KA + G E + A + ++ +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG--ETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I ++Q G A P PE W G +I SD E
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKIE--RSDRIYWYWP---ED 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L+IR+ + N G S L
Sbjct: 60 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 5e-10
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 38 TAVVGSRVTLPCRV----IDKTGVLQWTKDDFAL-----------GPHRNLSGFDRYAMI 82
VG LPC + W K + RY +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQV 109
G +GD SL I V LDD Y C++
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCCRI 91
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 6e-10
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
P I TQ I G CSA S P W E + ++Y+ L E
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 688 GIK--STLIIRESRHDHFGVYNCSVSNPYGSD 717
++ + L +R G Y C +SN +GS
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-08
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV---LQWTKDDFALGPHRNLSGFDRYAMIGSD 85
+ ++P+ Q+A+ GS V+ C + W D+ AL + A G
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
E L + V + YQC +S G S A LT+
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNH-FGS--SYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 384 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------------------- 424
D P+ +P + G+ V+ C + +T+
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 425 IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ +++ + L L G Y C S
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------------------- 578
D P+ +P + G+ V+ C + +T+
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 579 IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
+ +++ + L L G Y C S
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
GDT + C KV S E++ S+ + + L ++ + +
Sbjct: 261 GDTLTIRCDTKQQGMT-KVWVSPSNEQVLSQGSNGSVSVRN-------GDLFFKKVQVED 312
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
GVY C ++++ + LK
Sbjct: 313 GGVYTCYAMGETFNETLSVELK 334
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 396 RPYSVQVDRGAGVNLLCDVDGNPAPEITW-------IHEDSDK--VVGNSPNLTLLMTSD 446
+ + + G + + CD ++ + + S+ V N +L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 447 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 505
+ G Y C A + + H T + +A P+
Sbjct: 311 EDGGVYTCYAMGETF--NETLSVELKVYNFTLHGHHDT----------LNAAADPWSHPQ 358
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITW-------IHEDSDK--VVGNSPNLTLLMTSD 600
+ + + G + + CD ++ + + S+ V N +L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 601 DLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE 659
+ G Y C A + + H T + +A P+
Sbjct: 311 EDGGVYTCYAMGETF--NETLSVELKVYNFTLHGHHDT----------LNAAADPWSHPQ 358
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 8e-10
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+E + G + L CR+ D + W +D L +R + G
Sbjct: 11 GVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVES------NRTRITGE---- 60
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+E+ + D Y C S+ G + + ++ V
Sbjct: 61 --EVEVRDSIPADSGLYACVTSSP-SGSD---TTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
PGD ++ C + W G ++ S+ + + + +R+S
Sbjct: 23 PGDLLQLRCRL-RDDVQ-SINWLRDGVQLV--ESNRTRITGE--------EVEVRDSIPA 70
Query: 702 HFGVYNCSVSNPYGSDSVEIML 723
G+Y C S+P GSD+ +
Sbjct: 71 DSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTS 445
S+ V G + L C + + I W+ + S++ + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 446 DDLAGRYYCKAS 457
+G Y C S
Sbjct: 69 PADSGLYACVTS 80
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDKVVGNSPNLTLLMTS 599
S+ V G + L C + + I W+ + S++ + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 600 DDLAGRYYCKAS 611
+G Y C S
Sbjct: 69 PADSGLYACVTS 80
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 7e-04
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDS-IVK 369
+ G ++L C+ + W + + + + E+ + + DS +
Sbjct: 21 VHPGDLLQLRCRLRDDV--QSINWLRDGVQLVESNRTRITGEEVEVRDSIPA--DSGLYA 76
Query: 370 CEVHNDVGKSEDSETLDVT 388
C + G +++V+
Sbjct: 77 CVTSSPSGSDTTYFSVNVS 95
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-10
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 16 ALSMGSLAQYREQKFAMEPQDQTAVV-GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLS 74
S+ + + F + + V G ++ L + D ++W K+ +
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSG--- 60
Query: 75 GFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+Y +L I L DDA YQC V L V
Sbjct: 61 --SKYIF--ESIGAKRTLTISQCSLADDAAYQCVVGG--------EKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 384 TLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV--- 433
++D F+ + + QV +G + L ++ + E+ W I K +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 434 -GNSPNLTLLMTSDDLAGRYYCKA 456
G LT+ S Y C
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVV 91
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 538 TLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVV--- 587
++D F+ + + QV +G + L ++ + E+ W I K +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 588 -GNSPNLTLLMTSDDLAGRYYCKA 610
G LT+ S Y C
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVV 91
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G R+ + E V W G+EI S Y G K TL I +
Sbjct: 31 GHKIRLTVEL-ADHDAE-VKWLKNGQEI-QMSGSKYIFESI----GAKRTLTISQCSLAD 83
Query: 703 FGVYNCSVSN 712
Y C V
Sbjct: 84 DAAYQCVVGG 93
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ + + G V ++W + L + +
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNV---QSKPTAEVKWYHNG------VELQESSKIHY--T 58
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ G +LEI DD Y+ T GE S +ATL V
Sbjct: 59 NTSGVLTLEILDCHTDDSGTYRAVC-TNYKGE---ASDYATLDV 98
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I R+ G R + S P E V W + G E+ S
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAE-VKWYHNGVELQ--ESSKIHYTNT----S 61
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
TL I + D G Y +N G S L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPN 438
+ + PR R S +V G + +V P E+ W + E S N+
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 439 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 474
+ L +DD +G Y + G E AT+ + G
Sbjct: 63 VLTLEILDCHTDD-SGTYRAVCTNYKG--EASDYATLDVTG 100
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPN 592
+ + PR R S +V G + +V P E+ W + E S N+
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 593 LTLLM----TSDDLAGRYYCKAS-VMGFPEVGAEATVYLKG 628
+ L +DD +G Y + G E AT+ + G
Sbjct: 63 VLTLEILDCHTDD-SGTYRAVCTNYKG--EASDYATLDVTG 100
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 1e-09
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 643 GDTARVECSAFSIPPPE-KVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESR 699
G+ + C+A + W Y + + D + STL I
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 700 HDHFGVYNCSVSNPYGSDSVEIMLK 724
G+Y C+ S+ + ++
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVR 107
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-05
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 7/102 (6%)
Query: 34 PQDQTAVVGSRVTLPCRVI---DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
VG ++ L C + W + ++ + ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132
+L I V D Y C S+G+ + + V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGL----MTKKNSTFVRVHEKP 112
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 13/117 (11%)
Query: 128 VLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186
VL P + G+ L L C + W + V +
Sbjct: 11 VLSPSHGIELSVGEKL--------VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 187 VDG--RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVS 241
STL + +TC A + ++ V P V
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR--VHEKPFVAFG 117
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 16/111 (14%)
Query: 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFD 77
S GS + K ++ A G+ TL C V + W KD L
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSS------S 55
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + L + + Y C+ L V
Sbjct: 56 KVRV--EAVGCTRRLVVQQAGQAEAGEYSCEAGGQ--------QLSFRLQV 96
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A + C + E VTW G+++ SS V G L+++++
Sbjct: 26 GASATLSCEV-AQAQTE-VTWYKDGKKLS--SSSKVRVEAV----GCTRRLVVQQAGQAE 77
Query: 703 FGVYNCSVSN 712
G Y+C
Sbjct: 78 AGEYSCEAGG 87
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 441
+ + VQ + GA L C+V E+TW S KV G + L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476
AG Y C+A + + G+
Sbjct: 71 QQAGQAEAGEYSCEAG-----GQQLSFRLQVAGQC 100
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-----EDSDKVV----GNSPNLTL 595
+ + VQ + GA L C+V E+TW S KV G + L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630
AG Y C+A + + G+
Sbjct: 71 QQAGQAEAGEYSCEAG-----GQQLSFRLQVAGQC 100
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 30/198 (15%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGV--------LQWTKDDFALGPHRNLSGFDRYAMIGS 84
P+ + S T C + +K + W + F + +Y +I
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-------QYTIINR 61
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLY 144
S + + + + C + T G+ T+ +PP+ P+ + +
Sbjct: 62 TA----SSVTFTDIASLNIQLTCNILTF--GQLEQNVYGITIISGLPPEKPKNL---SCI 112
Query: 145 TTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK 204
E +++ E E T ++ T+ S + A +R T S V
Sbjct: 113 VNEGKKMRCEW-----DGGRE-THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTV 166
Query: 205 EHHNTTFTCQAQNTADRT 222
N +A+N +
Sbjct: 167 YFVNIEVWVEAENALGKV 184
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-09
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFD-RYAMIGS 84
F +PQ T VG +T +V + + ++W K + + +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ ++I + Y+C+V+ S L V
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEVTYKD-KF---DSCSFDLEVHESTGTT 116
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-06
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 643 GDTARVECSAFSIPPPEK--VTWSYRGEEIGVGSSDDYSV----LEDPLKEGIKSTLIIR 696
G+ + K + W ++G+ + + S + + + I
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKW-FKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ + G Y C V+ DS L+
Sbjct: 81 KAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 23/90 (25%)
Query: 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSD 430
G F +P V G + + V P I W +++
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 431 KVVGNSPNLTLLM---TSDDLAGRYYCKAS 457
+ + + + AG Y C+ +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNF-AGNYRCEVT 95
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 23/90 (25%)
Query: 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSD 584
G F +P V G + + V P I W +++
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 585 KVVGNSPNLTLLM---TSDDLAGRYYCKAS 611
+ + + + AG Y C+ +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNF-AGNYRCEVT 95
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-09
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 21/118 (17%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRN-LSGFDRYAMIG 83
F P Q VG V L C G +QW + + L R +
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEA---VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 84 SDEE----GDYSLEIYPVMLDDDARYQCQVS--------TGILGEPAIRSRFATLTVL 129
++ I ++ +D Y+C+ S T +R++ A + VL
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ-AVVLVL 136
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-09
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 619 GAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV----- 672
+ + +Q G + + C A P PE + W + G+
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGPNDICSQL 69
Query: 673 --GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719
G+ D + + ST+ I + G Y C SN + +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 30/117 (25%)
Query: 518 VGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT 577
+GSS + H+ G + F P S Q G V L C+ G+P PEI
Sbjct: 1 MGSSH-HHHHHSSGLVPRGSHM-----AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 578 WIHED--------------------SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS 611
W E T+ + +D G Y C+AS
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED-TGTYECRAS 110
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 24/111 (21%), Positives = 32/111 (28%), Gaps = 29/111 (26%)
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED- 428
H+ G + F P S Q G V L C+ G+P PEI W E
Sbjct: 6 HHHHHSSGLVPRGSHM-----AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
Query: 429 -------------------SDKVVGNSPNLTLLM---TSDDLAGRYYCKAS 457
T+ + +D G Y C+AS
Sbjct: 61 GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED-TGTYECRAS 110
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-06
Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 128 VLVPPDPPRIVQG-DTLYTTEDREIELECISANGKPPAEITW-------IDGTGTVMSNV 179
V VQ + +EL C A G P EI W D +
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHC-EAVGSPVPEIQWWFEGQGPNDICSQLWDGA 73
Query: 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA-PKV 238
R+ ST+ + E T+ C+A N DR + + VK+ +
Sbjct: 74 RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR--VKWVRAQA 131
Query: 239 QVSVI 243
V V+
Sbjct: 132 VVLVL 136
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-09
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 18/106 (16%)
Query: 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIG 83
ME + + V C G ++W K+ + G+
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGY------- 58
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+SL + V+ D Y C V G + L V+
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVV-ENEYGS---INHTYHLDVV 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ R +T + C A P P + W G+E + +
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ---- 63
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LI+ G Y C V N YGS + L
Sbjct: 64 -HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 391 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 436
P + + V V C GNP P + W+ + KV
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 437 PNLTLLMTSDDLAGRYYCKAS 457
+L + G Y C
Sbjct: 65 WSLIMESVVPSDKGNYTCVVE 85
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 545 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 590
P + + V V C GNP P + W+ + KV
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 591 PNLTLLMTSDDLAGRYYCKAS 611
+L + G Y C
Sbjct: 65 WSLIMESVVPSDKGNYTCVVE 85
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 134 PPRIVQGDTLYTT-----EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188
P + + ++ C A G P + W+ R+ +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCP-AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
+L++ +TC +N L ++
Sbjct: 63 Q-----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGS 84
+ P D G TL C+ G ++W K + ++ R +
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA---EGRPTPTIEWYKGGERVETDKDDPRSHRMLL--- 64
Query: 85 DEEGDYSLEIYPVML-----DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133
G SL ++ D+ Y C + GE S A+L V
Sbjct: 65 -PSG--SLFFLRIVHGRKSRPDEGVYVCVARNYL-GE--AVSHDASLEVAAAAH 112
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-08
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNS---P 437
+ PR P + V +G L C +G P P I W + D D + P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 438 NLTLL--------MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
+ +L + D G Y C A +G V +A++ + H
Sbjct: 66 SGSLFFLRIVHGRKSRPD-EGVYVCVARNYLG-EAVSHDASLEVAAAAHHHHH 116
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-08
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNS---P 591
+ PR P + V +G L C +G P P I W + D D + P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 592 NLTLL--------MTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
+ +L + D G Y C A +G V +A++ + H
Sbjct: 66 SGSLFFLRIVHGRKSRPD-EGVYVCVARNYLG-EAVSHDASLEVAAAAHHHHH 116
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I+ H G+ A + C A P P + W GE + DD L G
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERV-ETDKDDPRSHRMLLPSG 67
Query: 689 ---IKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724
+ R+SR D GVY C N G S + L+
Sbjct: 68 SLFFLRIVHGRKSRPDE-GVYVCVARNYLGEAVSHDASLE 106
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 134 PPRIVQ--GDTLYTTEDREIELECISANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
PPRIV+ D + ++ L C A G+P I W G +
Sbjct: 9 PPRIVEHPSDLI-VSKGEPATLNC-KAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYAPKVQV 240
+ +V K + C A+N + A L+ V A
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE--VAAAAHHHH 115
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 4e-09
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 23/121 (19%)
Query: 34 PQDQTAVVGSRVTLPCRV-----IDKTGVLQWTKDDFALGPHRNLSGF------------ 76
++ VGS+VTL C + W ++ +
Sbjct: 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGT 65
Query: 77 --DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
+R +G D S+ I+ + D+ + C V P I + + +T+ V
Sbjct: 66 FKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKN----PPDIVGKTSQVTLYVFEKV 121
Query: 135 P 135
P
Sbjct: 122 P 122
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-08
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P + + + + S P P + W + G + S LE E +
Sbjct: 4 PASV--QLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 690 K-STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+ L + + H + G Y +NP+G S IM
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 134 PPRIVQGDTLYTTEDREIELECI--SANGKPPAEITWI-DGTGTVMSNVRVTEEASVDGR 190
P VQ E+ CI S +G+P + W+ +G+ ++ TE
Sbjct: 3 MPASVQ-----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
T L L +N +T A N + +
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 397 PYSVQVDRGAGVNLLC---DVDGNPAPEITW----------------IHEDSDKVVGNSP 437
P SVQ+ ++ C VDG PAP + W E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 482
L L + G Y A+ G + A P +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFG--QASASIMAAFMDNPFEFNPE 107
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 551 PYSVQVDRGAGVNLLC---DVDGNPAPEITW----------------IHEDSDKVVGNSP 591
P SVQ+ ++ C VDG PAP + W E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 592 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISHR 636
L L + G Y A+ G + A P +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFG--QASASIMAAFMDNPFEFNPE 107
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 32/189 (16%)
Query: 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFD-RYAMIGSDEEGDY 90
+ P G V + C L G + G+
Sbjct: 4 VSPSKVILPRGGSVLVTCSTS---------------CDQPKLLGIETPLPKKELLLPGNN 48
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
+ +D++ C + + LTV P+ + + ++
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCP----DGQSTAKTFLTVYWTPERVELAPLPSWQP-VGKQ 103
Query: 151 IELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHN 208
+ L C G P A + + G + E + T + +++HH
Sbjct: 104 LTLRCQVEGGAPRAQLTVVLLRG-EKELKREPAVGEP--------AEVTTTVLVRRDHHG 154
Query: 209 TTFTCQAQN 217
F+C+ +
Sbjct: 155 AQFSCRTEL 163
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 2e-07
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 12/178 (6%)
Query: 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKVVGNSPNLTLLMTSD-DLAGR 605
P V + RG V + C + + +++ N + S+ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 606 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664
C ++ TVY ++ + G + C P ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVV 122
Query: 665 -YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721
RGE+ E + E + T + R H ++C +E+
Sbjct: 123 LLRGEKELKR--------EPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 172
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 4/127 (3%)
Query: 394 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKVVGNSPNLTLLMTSD-DLAGR 451
P V + RG V + C + + +++ N + S+ +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 452 YYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS 510
C ++ TVY ++ + G + C P ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVV 122
Query: 511 -YRGEEI 516
RGE+
Sbjct: 123 LLRGEKE 129
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 16/164 (9%)
Query: 306 QVSVIGSNRLVE-GTDVRLYCKAE-ANPSHMKYRWYINDQPVPAAASATELY-LTNITRH 362
Q SV S ++ G V + C P + + + + + ++Y L+N+
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDG-NPAP 420
DS C + G+S L V + P P G + L C V+G P
Sbjct: 59 -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117
Query: 421 EITW--------IHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456
++T + + T+L+ D ++ C+
Sbjct: 118 QLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDD-YSVLEDPL 685
P I+ R G A ++C PP V W G + S SVL D
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT---PPMSSVKWLLPNGTVLSHASRHPRISVLND-- 406
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
TL GVY C V+N G+ + L +
Sbjct: 407 -----GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 440
P P + + G L C P + W+ + + S + L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 441 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 481
G Y C + V G A A + + T H
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAG--NSNASAYLNVSTAGTHHHH 450
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 594
P P + + G L C P + W+ + + S + L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 595 LLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRPTIISH 635
G Y C + V G A A + + T H
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAG--NSNASAYLNVSTAGTHHHH 450
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P+D G L CR ++W + + + S R ++ D +L
Sbjct: 358 APRDLNISEGRMAELKCRT-PPMSSVKWLLPNGTV--LSHASRHPRISV-----LNDGTL 409
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV--LVPPDPP 135
V+L D Y C + T + G + A L V
Sbjct: 410 NFSHVLLSDTGVYTC-MVTNVAGN---SNASAYLNVSTAGTHHHH 450
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 133 DPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P I+ L +E R EL+C P + + W+ GTV+S+ AS R
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSH------ASRHPRI 401
Query: 192 TTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ + TL + +TC N A + A L
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTW-SYRGEEIGVGSSDD-YSVLEDPL 685
P I+ G A ++C A S V+W + G + G+ +VL D
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTS-VSWITPNGTVMTHGAYKVRIAVLSD-- 396
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
TL G+Y C VSN G+ + L
Sbjct: 397 -----GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P D G L CR + W + + H + R A+ D +L
Sbjct: 347 PPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHG--AYKVRIAV-----LSDGTL 399
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPP 135
V + D Y C VS +G + ATL V
Sbjct: 400 NFTNVTVQDTGMYTCMVSN-SVGN---TTASATLNVTGTHHHHH 439
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P + L TE EL+C ++ ++WI GTVM++ + R
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST--SLTSVSWITPNGTVMTH------GAYKVRI 391
Query: 192 TTVKS-TLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
+ TL T +TC N+ T A L
Sbjct: 392 AVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 440
P P + V G L C ++WI + + + L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 441 LLMTSDDLAGRYYCKAS 457
+ G Y C S
Sbjct: 401 FTNVTVQDTGMYTCMVS 417
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPN----------LT 594
P P + V G L C ++WI + + + L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 595 LLMTSDDLAGRYYCKAS 611
+ G Y C S
Sbjct: 401 FTNVTVQDTGMYTCMVS 417
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-08
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKD---DFALGPHRNLSGFDRYAMI 82
F M PQD VG +T RV + K V++W K D + ++L D Y
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR- 65
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + + L I Y+C+VST LTV
Sbjct: 66 -ASKVYLFELHITDAQPAFTGSYRCEVSTKD-KF---DCSNFNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 3e-07
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 643 GDTARVECSAFSIPPPEK--VTWSYRGE--EIGVGSSDDYSVLE--DPLKEGIKSTLIIR 696
G + + V W ++G+ ++ + + D + L I
Sbjct: 19 GGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+++ G Y C VS D L
Sbjct: 78 DAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 23/89 (25%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSDK 431
F RP +V G + V G P + W DS
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 432 VVGNSPNLTLLM---TSDDLAGRYYCKAS 457
L + G Y C+ S
Sbjct: 65 RASKVYLFELHITDAQPAF-TGSYRCEVS 92
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 23/89 (25%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIH----------------EDSDK 585
F RP +V G + V G P + W DS
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 586 VVGNSPNLTLLM---TSDDLAGRYYCKAS 611
L + G Y C+ S
Sbjct: 65 RASKVYLFELHITDAQPAF-TGSYRCEVS 92
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG---VLQWTKDDFAL-----------GPHRNLSGFDRY 79
+ G VTLPC G + W + G RY
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PR 136
+ G+ EG+ SL I ++ D Y C V E F + V P+ PR
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVV------EIPGAFHFVDYMLEVKPELVPR 115
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 2e-07
Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 8/181 (4%)
Query: 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD 601
T+ F S +N+ V+ P W N L + +
Sbjct: 74 THCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPN 133
Query: 602 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFG----IPGDTARVECSAFSIPP 657
+ + + + L T H + G A +CSA
Sbjct: 134 FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV 193
Query: 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717
+G ++ + V ++ + + G Y C + G
Sbjct: 194 AG-DRLWLQGIDVRDAPLKEIKVTSSR---RFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Query: 718 S 718
Sbjct: 250 I 250
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 19/190 (10%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
+ Q+ G T C I + + + + S
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP-----LKEIKVTSSRRFIA 223
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE 150
S + D +Y+C + T G S +A L V PP P Q ++
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRT-EGGV--GISNYAELVVKEPPVPIAPPQLASV-GATYLW 279
Query: 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTT 210
I+L S NG P ++ ++ + VD + L P E+
Sbjct: 280 IQLNANSINGDGPIVAREVEYC---TASGSWNDRQPVDSTSYKIGH---LDPDTEYE--- 330
Query: 211 FTCQAQNTAD 220
+ +
Sbjct: 331 ISVLLTRPGE 340
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 25/114 (21%)
Query: 38 TAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALG--------------PHRNLSGF-D 77
G LPC+ ++W
Sbjct: 16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKG 75
Query: 78 RYAMIGSD-EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
R +D + GD S+ + + L D YQC+V P + ++ L VLV
Sbjct: 76 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKIHLVVLV 125
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 629 RPTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685
+P +++ Q PG C+A S P + W+ + D++
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN------ 61
Query: 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L IR + G Y C+ SN + D L
Sbjct: 62 -----GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-06
Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 11/105 (10%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183
A L P + + + ++ C + + P + W +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP------ 54
Query: 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228
R L + + T+ C N A L
Sbjct: 55 -----SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 27/102 (26%), Positives = 33/102 (32%), Gaps = 23/102 (22%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
E + Q+ G+ VT C K+ L WT+ P R D G
Sbjct: 16 EQRSQSVRPGADVTFICTA--KSKSPAYTLVWTRLHNGKLPSRA-----------MDFNG 62
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I V D Y C S A+ ATL V V
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMF----AMDQGTATLHVQV 98
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 396 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNS--PNLTLLMTS---DDLA 449
S V GA V +C +PA + W + K+ + N L + + D A
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD-A 74
Query: 450 GRYYCKAS 457
G Y C S
Sbjct: 75 GTYVCTGS 82
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 550 RPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGNS--PNLTLLMTS---DDLA 603
S V GA V +C +PA + W + K+ + N L + + D A
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD-A 74
Query: 604 GRYYCKAS 611
G Y C S
Sbjct: 75 GTYVCTGS 82
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-07
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 38 TAVVGSRVTLPCRVIDKTG------VLQWTKDD------FALGPHRNLSGFDRYAMIGSD 85
A LPC+ + V+ W + LG + S +Y S
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVST 111
+ ++L ++ + + D YQC +
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHH 90
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 9e-07
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYT 145
G+ + + V + Y + L L V PP +
Sbjct: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQ----GQVTLELAVYKPPKVSLMPATLARAA 305
Query: 146 TEDREIELECISANGKP--PAEITWIDGTGTVMSNVRVTEEASVDGRRT------TVKST 197
+ EL C+ ++ P E+ W G + + + + R ++
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365
Query: 198 LVLTP-KKEHHNTTFTCQAQ 216
L P E H + C+
Sbjct: 366 LQPPPVTTEQHGARYACRIH 385
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 38 TAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD-------- 85
A+VG LPCR+ + W + F+ H +G D+ A +
Sbjct: 17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 86 ----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGD 141
EG +L I V D+ Y C L V P +
Sbjct: 77 KESIGEGKVALRIQNVRFSDEGGYTCFFRDH----SYQEEAAVELKVEDPFYWINPGRSR 132
Query: 142 T 142
+
Sbjct: 133 S 133
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G +A C + PP VTW E+ S Y + G L I + D
Sbjct: 497 GQSANFYCRVIASSPPV-VTWHKDDRELK--QSVKYMKRYN----GNDYGLTINRVKGDD 549
Query: 703 FGVYNCSVSNPYGSDS 718
G Y N YG+
Sbjct: 550 KGEYTVRAKNSYGTKE 565
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMI 82
+ +F ++P G CRVI + V+ W KDD R L +Y
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD------RELKQSVKYMK- 531
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
DY L I V DD Y + G + L V
Sbjct: 532 -RYNGNDYGLTINRVKGDDKGEYTVRAKNS-YGT---KEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 377 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 431
D+ PRF +PY +V G N C V + P +TW +D S K
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 432 VV----GNSPNLTLLMTSDDLAGRYYCKAS 457
+ GN LT+ D G Y +A
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----SDK 585
D+ PRF +PY +V G N C V + P +TW +D S K
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 586 VV----GNSPNLTLLMTSDDLAGRYYCKAS 611
+ GN LT+ D G Y +A
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 42/229 (18%), Positives = 67/229 (29%), Gaps = 33/229 (14%)
Query: 533 SEDSETLD--VTYG---PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV- 586
S + G P A P +V V RG V L C ED +
Sbjct: 8 SGSDDDDKGSHMGGQDKPFLSAWPSAV-VPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIP 65
Query: 587 ----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE--ATVYL-----KGRPTIISH 635
+ + + AG Y C+ S P + V + +P++++H
Sbjct: 66 IFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH 125
Query: 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLII 695
G+ ++C S E G S D ++ K+ I
Sbjct: 126 PGPLVKSGERVILQCW--SDIMFEHFFLHKEGI-----SKDPSRLVGQIHDGVSKANFSI 178
Query: 696 RESRHDHFGVYNCSVSNPYG-------SDSVEIMLKPQKSFPLLLILTG 737
G Y C S + SD ++I++ P L G
Sbjct: 179 GPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG 227
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 40/245 (16%), Positives = 63/245 (25%), Gaps = 30/245 (12%)
Query: 42 GSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101
G VTL C + K+D P I S + PV
Sbjct: 38 GGHVTLRCHYRHRFNNFMLYKEDRIHIP------------IFHGRIFQESFNMSPVTTAH 85
Query: 102 DARYQCQVSTGILGEPAIRSRF---ATLTVLVPPDPPRIVQGDTLYTTEDREIELECISA 158
Y C+ S P S + V P ++ + L+C
Sbjct: 86 AGNYTCRGSHP--HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQC--- 140
Query: 159 NGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218
E ++ G R+ + K+ + P T+ C T
Sbjct: 141 WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVS----KANFSIGPMMLALAGTYRCYGSVT 196
Query: 219 ADRTYKVAR---LKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 274
A L ++V K +S ++ G V L C + S+ Y
Sbjct: 197 HTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC--SSRSSYDMYHLSRE 254
Query: 275 DQPVP 279
Sbjct: 255 GGAHE 259
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 17/158 (10%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDV 376
V L C + P YR L++ + R +C N
Sbjct: 21 LEKPVTLRC--QGPPGVDLYRLEKLSSSRYQ--DQAVLFIPAMKRS-LAGRYRCSYQNGS 75
Query: 377 GKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431
S S+ L++ P A+P V G V L C + E
Sbjct: 76 LWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPA 133
Query: 432 VVGNSP-----NLTLLMTSDDLAGRYYCKASVMGFPEV 464
N + ++ + +G Y C + P +
Sbjct: 134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYL 171
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 22 LAQYREQKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRY 79
LA R + T++ G VTL C + + + W A G H + R+
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-----RW 55
Query: 80 AMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ 139
A +G L + V L D Y C + G L V VPP+ P++
Sbjct: 56 AGMGR------RLLLRSVQLHDSGNYSCYRAGRPAG-------TVHLLVDVPPEEPQLSC 102
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 19/176 (10%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCD-VDGNPAPEITW------IHEDSDKVVGNSPNLTLLM 443
P + G V L C V+ + W + G L L
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRS 66
Query: 444 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP- 502
+G Y C + G P V + +S + V C
Sbjct: 67 VQLHDSGNYSCYRA--GRPAGTVHLLVDVPPEEPQLSCFR----KSPLSNVVCEWGPRST 120
Query: 503 --PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQV 556
K R + + S L V G + Y V +
Sbjct: 121 PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGD---SSFYIVSM 173
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691
++ +PGD+ + C V W R G S G+
Sbjct: 10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA---------GMGR 60
Query: 692 TLIIRESRHDHFGVYNCSVSN 712
L++R + G Y+C +
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAG 81
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 22/180 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 609
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 610 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 669
+YLK R + D A+ + + K + +
Sbjct: 64 TP-----ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118
Query: 670 IGVGSS---------DDYSVLED----PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716
S L+D K+T + + D G Y C + +
Sbjct: 119 SRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 35/218 (16%), Positives = 58/218 (26%), Gaps = 54/218 (24%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD-DLAGRYYCK 455
Y V + G V L C +D + W + + +L L S+ + +G Y C
Sbjct: 7 EYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 456 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 515
+YLK R + D A+ + + K
Sbjct: 64 TP-----ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAK------- 111
Query: 516 IGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE 575
V D + + S V L C +
Sbjct: 112 --------NLVQVDGSRGDGS-------------------------VLLTCGLTDKT--- 135
Query: 576 ITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 611
I W+ + S + L + D G Y C+ +
Sbjct: 136 IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 3e-05
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 34/167 (20%)
Query: 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN--- 374
GT V L C +++ +W N Q +P L L + + + C
Sbjct: 14 GTSVELTCPLDSDE---NLKWEKNGQELPQK-HDKHLVLQDFSEVEDSGYYVCYTPASNK 69
Query: 375 --------DVGKSEDSETLDV-------------TYGPRFRARPYSVQVDRGAG-VNLLC 412
VG ++D++ V RG G V L C
Sbjct: 70 NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC 129
Query: 413 DVDGNPAPEITWIHEDS--DKVVGNSPNLTLLMTSDDLAGRYYCKAS 457
+ I W+ + S + L + D G Y C+ +
Sbjct: 130 GLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 19/165 (11%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
V++ C+A + N + E + ++ + +
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDAN-KAGRYQ 80
Query: 370 CEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
C+ + S+TL++ P A V + G ++L C P +
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSL 139
Query: 425 IHEDSDKVV-----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E + + N +L +++G Y C P +
Sbjct: 140 AKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYL 184
|
| >1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 34 PQDQTAVVGSRVTLPCRV-------IDKTGVLQWTKDD--------FALGPHRNLSGF-D 77
P++ + GS + +PC + W D + P F
Sbjct: 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
R ++G+ + +L + + +D Y +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
|
| >3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNL--------SGFD-RYAMI 82
P T G+ T C + + + +L W + + + D R+ +I
Sbjct: 6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII 65
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
D+ + I +D Y C + S A L V
Sbjct: 66 QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVV 111
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 43/270 (15%), Positives = 77/270 (28%), Gaps = 34/270 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
D + L C V T + W +D + +
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMD-----VDLSTASTTQEG--ELA 68
Query: 91 S----LEIYPVMLDDDARYQCQVS------TGILGEPAIRSRFATLTVLVPPDPPRIVQG 140
S L + D Y CQV+ + A + L P P +
Sbjct: 69 STQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIR 128
Query: 141 DTLYTTEDREIELECISANGKPP---AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKST 197
+ T C+ + P ++TW +G +++ EE +G TV ST
Sbjct: 129 KSPTIT--------CLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGT-LTVTST 179
Query: 198 LVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR-LVEGTDVRL 256
L + + T+ C+ + + +V + L
Sbjct: 180 LPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTL 239
Query: 257 YCKAEA-NPSHMKYRWYINDQPVPAAASAT 285
C + P + +W N+ +P A +T
Sbjct: 240 ACLIQNFMPEDISVQWLHNEVQLPDARHST 269
|
| >3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 33/124 (26%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ-----WTKDDFALGPHRNLSGF------------ 76
+ +G V LPC ++ L W + D A H+N++ F
Sbjct: 9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPD-APANHQNVAAFHPKMGPSFPSPK 67
Query: 77 ------------DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFA 124
E D +L ++ + ++D+ Y C+ +T G
Sbjct: 68 PGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKG---SVRGMT 124
Query: 125 TLTV 128
L V
Sbjct: 125 WLRV 128
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 20/157 (12%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
+ V + C + N ++Y+ + + + Y+ ++
Sbjct: 17 KEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR-MAGQYS 73
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ----VDRGAGVNLLCDVDGNPAPEITWI 425
C SE S LD+ + SV V G V C +D + +
Sbjct: 74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM-FLLL 132
Query: 426 HEDSDKVVGNSP-----NLTLLMTSDDLAGRYYCKAS 457
E V L + G Y C S
Sbjct: 133 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 169
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 30/215 (13%), Positives = 55/215 (25%), Gaps = 24/215 (11%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
+ V + C + N ++Y+ + + + Y+ ++
Sbjct: 20 KEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSR-MAGQYS 76
Query: 370 CEVHNDVGKSEDSETLDVTYGPRFRARPYSVQ----VDRGAGVNLLCDVDGNPAPEITWI 425
C SE S LD+ + SV V G V C +D + +
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM-FLLL 135
Query: 426 HEDSDKVVGNSP-----NLTLLMTSDDLAGRYYCKAS----VMGFPEVGAEATVYLKGRP 476
E V L + G Y C S FP + V
Sbjct: 136 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN 195
Query: 477 TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511
T ++ + + + W +
Sbjct: 196 TSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDH 230
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} Length = 270 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 42/250 (16%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 10 ALWVLLA-LSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALG 68
S G Q P+ G + + C V+ W + +
Sbjct: 13 KQATKGGGGSGGGGGMKVIQ----TPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNE 68
Query: 69 P-----HRNLSGFDRYAMI-----GSDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEP 117
+N + M SLEI D A Y C S +
Sbjct: 69 FKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDT 128
Query: 118 AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELE--------CISANGKPP-AEITW 168
F T L+ + + V + E E E+ C++ P E++W
Sbjct: 129 Q---YFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 185
Query: 169 -IDG----TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQ---NTA 219
++G +G + E+ +++ R + S L ++ ++ F CQ Q +
Sbjct: 186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245
Query: 220 DRTYKVARLK 229
+ + R K
Sbjct: 246 NDEWTQDRAK 255
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 8e-05
Identities = 34/185 (18%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 400 VQVDRGAGVNLLCDVDG-NPAPEITWIHEDSD----KVVGNSPNLTLLMTSDDLAGRYYC 454
V V GA L C + + + W D+ + LT+ S AG C
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVC 76
Query: 455 KASVMGFP-EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY-- 511
S G + + VY +S +PGD V C+A + P + S+
Sbjct: 77 VGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL--VPGD-PEVACTAHKVTPVDPNALSFSL 133
Query: 512 -RGEEIGVGS---SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCD 567
G + G+ + + + ++ VT R L C
Sbjct: 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLG------TPVPPALYCQ 187
Query: 568 VDGNP 572
Sbjct: 188 ATMRL 192
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 29/171 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
G V ++C + +YR + P P + + ++T + +
Sbjct: 18 WGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTE-DYAGRYR 74
Query: 370 CEVHNDVGKSEDSETLDVT-----YGPRFRARPYSVQVDRGAGVNLLCDV---------- 414
C + VG S+ S+ L++ P A P + V G V LLC
Sbjct: 75 CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSRSPMDTFLLC 133
Query: 415 -DGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
+ P + E + + + + G Y C +S +
Sbjct: 134 KERAAHPLLCLRSEHGAQ--QHQAEFPMSPVTSVHGGTYRCFSSHGFSHYL 182
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 27/207 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD----------FALGPHRNLSGF-DRYAMI 82
P+ G VTL C + W + D + + Y++
Sbjct: 10 PKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS 69
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDT 142
+E + L + + A Y C S+ T +
Sbjct: 70 REKKE-SFPLTVTSAQKNPTAFYLCASSSR--SSYEQYFGPGTRLTVTEDLKNVFPPEVA 126
Query: 143 LYTTEDREIE------LECISANGKP-PAEITW-IDG----TGTVMSNVRVTEEASVDGR 190
++ + EI L C++ P E++W ++G +G + E+ +++
Sbjct: 127 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDS 186
Query: 191 RTTVKSTLVLTPKK-EHHNTTFTCQAQ 216
R ++ S L ++ ++ F CQ Q
Sbjct: 187 RYSLSSRLRVSATFWQNPRNHFRCQVQ 213
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 28/171 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVP-------AAASATELYLTNITRHQHDSIVK 369
G V + C + +YR P P + + ++T H H +
Sbjct: 18 RGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEH-HAGRYR 74
Query: 370 CEVHNDVGKSEDSETLDVTYG-----PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW 424
C ++ G SE S+ L++ P A P V V G V L C
Sbjct: 75 CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSRLRFDR-FIL 132
Query: 425 IHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
E K+ + + C S +V
Sbjct: 133 TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQV 183
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} Length = 268 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 46/254 (18%), Positives = 84/254 (33%), Gaps = 36/254 (14%)
Query: 4 MTRVQSALWVLLALSMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKD 63
+ ++ + G Q P ++ G V L C I L W +
Sbjct: 7 VHFFKNIVTPRGGSGGGGGGAGVSQ----TPSNKVTEKGKYVELRCDPISGHTALYWYRQ 62
Query: 64 DFALGP----------HRNLSGF--DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111
GP + SG DR+ E +L+I D A Y C S
Sbjct: 63 SLGQGPEFLIYFQGTGAADDSGLPNDRFF-AVRPEGSVSTLKIQRTERGDSAVYLCATSA 121
Query: 112 GILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIE------LECISANGKPP-A 164
+ T+ + P V ++ + EI L C++ P
Sbjct: 122 LGDTQYFGPGTRLTVLEDLKNVFPPEV---AVFEPSEAEISHTQKATLVCLATGFYPDHV 178
Query: 165 EITW-IDG----TGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQN- 217
E++W ++G +G + E+ +++ R ++ S L ++ ++ F CQ Q
Sbjct: 179 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 238
Query: 218 --TADRTYKVARLK 229
+ + + R K
Sbjct: 239 GLSENDEWTQDRAK 252
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D Length = 245 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 23/206 (11%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP-----HRNLSGFDRYAMI-----G 83
P Q +G VTL C + W K N ++ +
Sbjct: 9 PSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV 68
Query: 84 SDEEG-DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR-----I 137
+G ++L+I P L+D A Y C S LTVL +
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAV 128
Query: 138 VQGDTLYTTEDREIELECISANGKP-PAEITW-IDG----TGTVMSNVRVTEEASVDGRR 191
+ + ++ L C++ P E++W ++G +G + E+ +++ R
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 188
Query: 192 TTVKSTLVLTPKK-EHHNTTFTCQAQ 216
+ S L ++ ++ F CQ Q
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQ 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 54/366 (14%), Positives = 104/366 (28%), Gaps = 121/366 (33%)
Query: 658 PEKVTWSYR--------GEEIG---VGSS--DDYSVLEDPLKEGIKSTLIIRE---SRHD 701
+ V+ + R EE+ V +Y L P+K + ++ + D
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 702 HFGVYNCSVSNPYGSDSVEIM------------LKPQKSFPLLLILTGVIGC---VVILV 746
+YN + + +V + L+P K +++ GV+G V L
Sbjct: 118 R--LYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAK----NVLIDGVLGSGKTWVALD 169
Query: 747 ALTMVVILCQ----------RKVKKPP----PGNGIEHHVTADGEKNQCKESDNSSNIS- 791
+ C+ + P + + + + N SD+SSNI
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKL 225
Query: 792 ---DIKLEFRTGSS-------------VSNV-HLDYAGHDSETGSESVHTRIGVPLAGPV 834
I+ E R V N + + + TR
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTR--------- 273
Query: 835 PMDQRYHRYSSADFADAVFPSLKPDGHNNNGF-------VFSDFIRDYNQTLPKLAPSPH 887
+ DF A + H++ + ++ Q LP+ + +
Sbjct: 274 --FK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 888 LPPSLSNSVIVTDKTPPPSHL------------TISSNSVDPRYSATYGNPY-----LRQ 930
P S+I + TI +S++ A Y +
Sbjct: 327 -P--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 931 SPNLPP 936
S ++P
Sbjct: 384 SAHIPT 389
|
| >1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* Length = 132 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 20/121 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQ--------WTKDDFALGPHRNLSGFD-------- 77
T G V + C W + + ++ +
Sbjct: 13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE 72
Query: 78 ---RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
R+ ++G + + +L I + D RY ++ G + + ++ V
Sbjct: 73 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQL-SVNVTALTHR 131
Query: 135 P 135
P
Sbjct: 132 P 132
|
| >1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGF--------DRYAMIGSD 85
PQ + G +T+ C LQW + + GP ++ R D
Sbjct: 8 PQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGD 67
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL--VPPDPPRIVQGDTL 143
D SL I D Y C + I + L+V + P + Q L
Sbjct: 68 ARKDSSLHITAAQPGDTGLYLCAGAGSQ--GNLIFGKGTKLSVKPNIQNPDPAVYQ---L 122
Query: 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK 203
++ + + C+ + ++ + +++ V + S+D + ++ V
Sbjct: 123 RDSKSSDKSV-CLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKS----NSAVAWSN 177
Query: 204 KEHHNTTFTCQAQ 216
K F C
Sbjct: 178 KSD----FACANA 186
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.8 bits (99), Expect = 4e-04
Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 29/207 (14%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
+ +E G V L C ++ G+ WT D G
Sbjct: 9 YVVELDWYPDAPGEMVVLTCDTPEEDGI-TWTLD-----------QSSEVLGSGK----- 51
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149
+L I D +Y C +L + L + D
Sbjct: 52 -TLTIQVKEFGDAGQYTCHKGGEVLS-------HSLLLLHKKEDGIWSTDILKDQKEPKN 103
Query: 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT----VKSTLVLTPKKE 205
+ L C + N W+ T ++ + S D + T S + +
Sbjct: 104 KTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNK 163
Query: 206 HHNTTFTCQAQNTADRTYKVARLKLLV 232
+ + CQ + + ++++V
Sbjct: 164 EYEYSVECQEDSACPAAEESLPIEVMV 190
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.0 bits (97), Expect = 6e-04
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464
G V L CD ITW + S +V+G+ LT+ + AG+Y C EV
Sbjct: 21 GEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG----GEV 74
Query: 465 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 514
+ + + L + I P + + C A + W
Sbjct: 75 LSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.0 bits (97), Expect = 6e-04
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618
G V L CD ITW + S +V+G+ LT+ + AG+Y C EV
Sbjct: 21 GEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG----GEV 74
Query: 619 GAEATVYLKGRPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668
+ + + L + I P + + C A + W
Sbjct: 75 LSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
|
| >1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} Length = 113 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 34 PQDQTAVVGSRVTLPCRV--IDKTGVLQWTKDDFALGPH--------RNLSGFDRYAMIG 83
P++ + +T+ CR K W + L +R ++
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD 67
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
+ + +++ + + + D Y C ++ G L +TV + P P
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWCGITKGGLD------PMFKVTVNIGPVP 112
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 8e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV----IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD 85
F +P + G + +V + ++W K + ++ + +
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS-GARFSFKESHNS 73
Query: 86 EEGDYS--LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131
Y+ L I V+L D Y+ +V + S + V P
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKA----KDTCDSCGFNIDVEAP 117
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 41/213 (19%), Positives = 60/213 (28%), Gaps = 35/213 (16%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK----------VVGNSPNLT 594
P A P + V V L C D E K + N +
Sbjct: 8 PSLLAHPGPL-VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFS 65
Query: 595 LLMTSDDLAGRYYCKASVMGFPEVGAEAT-------VYLKGRPTIISHRTQFGIPGDTAR 647
+ DLAG Y C SV P + + L +P++ + + G++
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVT 125
Query: 648 VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707
+ CS S + S GE S V H G Y
Sbjct: 126 LSCS--SRSSYDMYHLSREGEAHERRFSAGPKV-------NGTFQADFPLGPATHGGTYR 176
Query: 708 CSVS---NPYG----SDSVEIMLKPQKSFPLLL 733
C S +PY SD + + + S
Sbjct: 177 CFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPS 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1011 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.98 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.98 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.97 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.97 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.97 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.97 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.97 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.97 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.97 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.97 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.97 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.97 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.97 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.96 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.96 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.96 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.96 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.96 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.96 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.96 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.96 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.95 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.95 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.95 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.95 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.94 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.94 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.94 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.94 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.94 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.94 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.94 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.94 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.94 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.94 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.94 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.93 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.93 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.92 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.91 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.9 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.9 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.89 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.89 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.89 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.89 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.89 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.89 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.88 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.88 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.88 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.88 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.88 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.88 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.88 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.87 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.87 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.87 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.86 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.86 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.86 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.86 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.85 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.85 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.85 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.85 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.85 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.85 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.84 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.84 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.84 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.84 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.84 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.84 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.84 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.84 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.84 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.84 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.84 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.84 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.83 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.83 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.83 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.83 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.83 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.83 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.83 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.83 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.83 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.83 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.82 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.82 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.82 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.82 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.82 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.82 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.82 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.82 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.82 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.82 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.82 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.82 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.82 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.82 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.81 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.81 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.81 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.81 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.81 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.81 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.81 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.81 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.81 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.81 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.81 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.81 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.81 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.81 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.8 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.8 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.8 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.8 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.8 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.8 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.8 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.8 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.8 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.8 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.8 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.8 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.8 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.79 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.79 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.79 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.79 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.79 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.79 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.79 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.79 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.79 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.79 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.79 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.78 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.78 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.78 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.78 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.78 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.78 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.78 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.78 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.78 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.78 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.78 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.77 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.77 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.77 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.77 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.77 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.77 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.76 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.76 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.76 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.76 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.76 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.76 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.76 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.76 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.76 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.76 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.76 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.76 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.76 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.75 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.75 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.75 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.75 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.75 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.75 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.75 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.75 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.75 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.75 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.75 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.74 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.74 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.74 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.74 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.73 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.73 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.73 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.73 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.73 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.73 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.73 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.73 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.73 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.73 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.73 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.73 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.73 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.73 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.73 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.73 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.73 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.73 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.73 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.73 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.73 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.73 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.72 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.72 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.72 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.72 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.72 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.72 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.72 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.72 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.72 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.72 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.72 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.72 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.71 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.71 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.71 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.71 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.71 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.71 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.71 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.7 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.7 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.7 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.7 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.7 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.7 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.7 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.7 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.7 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.7 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.7 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.7 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.69 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.69 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.69 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.69 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.69 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.69 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.69 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.69 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.69 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.69 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.69 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.68 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.68 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.68 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.68 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.68 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.68 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.68 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.68 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.68 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.68 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.68 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.68 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.67 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.67 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.67 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.67 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.67 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.66 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.66 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.66 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.66 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.66 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.66 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.66 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.66 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.66 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.65 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.65 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.65 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.65 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.65 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.65 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.64 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.64 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.64 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.64 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.64 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.63 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.63 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.63 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.63 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.63 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.63 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.63 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.63 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.63 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.63 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.63 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.62 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.62 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.62 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.62 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.62 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.62 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.62 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.62 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.61 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.61 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.61 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.61 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.6 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.6 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.6 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.6 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.59 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.59 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.59 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.59 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.58 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.58 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.58 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.58 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.58 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.58 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.58 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.57 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.57 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.57 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.56 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.56 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.55 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.55 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.54 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.53 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.53 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.52 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.52 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.52 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.52 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.5 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.5 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.5 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.48 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.48 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.47 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.47 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.45 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.45 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.43 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.43 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.43 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.43 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.43 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.42 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.42 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.41 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.41 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.4 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.4 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.39 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.39 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.39 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.39 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.39 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.38 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.37 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.37 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.37 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.36 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.36 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.36 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.35 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.35 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.34 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.33 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.33 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.33 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.33 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.33 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.32 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.32 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.32 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.32 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.32 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.31 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.31 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.31 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.31 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.3 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.3 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.3 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.3 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.29 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.29 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.29 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.29 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.29 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.29 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.29 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.28 | |
| 1zxq_A | 192 | ICAM-2, intercellular adhesion molecule-2; immunog | 99.28 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.28 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.28 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.27 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.26 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.26 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.26 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.25 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.25 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.25 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.25 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.25 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.24 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.24 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.23 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.23 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.23 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.23 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.22 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.22 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.22 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.22 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.21 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.21 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.21 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.2 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.19 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.19 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.19 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.18 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.18 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.18 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.17 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.16 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.16 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.16 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.16 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.16 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.15 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.15 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.14 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=614.19 Aligned_cols=537 Identities=21% Similarity=0.341 Sum_probs=428.6
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...++++.+.+|++++|.|.+.+ +.+.+.|+|++..+. ...++.+... .+..+|.|.+++.+|+|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~------~~~~~~~~~~--~~~~~L~I~~v~~~D~G 74 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR------SAPAYKMQFK--NNVASLVINKVDHSDVG 74 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCC------CCSSEEEECC--TTEEEEEESSCCGGGCE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEcc------CCCCEEEEEE--CCEEEEEEccCChhhCE
Confidence 35799999999999999999999999997 678999999997763 2345555432 35678999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
.|+|.|.|.. +.....+.|.|.....+|.+.. ...+.+.+|+.+.|.|. +.|.|+++++|+||+..+..+.++.
T Consensus 75 ~Y~C~a~N~~----g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~-~~g~p~~~v~W~k~g~~l~~~~~~~ 149 (570)
T 3b43_A 75 EYTCKAENSV----GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR-INGSEPLQVSWYKDGELLKDDANLQ 149 (570)
T ss_dssp EEEEEEEETT----EEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEE-EESSSSCEEEEEETTEECCCCSSEE
T ss_pred EEEEEEEeCC----ceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEE-EccCCCCEEEEEECCEECcCCCCEE
Confidence 9999999863 3345556677766555555543 34567788999999999 6788999999999998876544433
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEccc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~ 262 (1011)
...... ..+|.|.++..+|+|.|+|.|.|..|....+..+.|.....|......+
T Consensus 150 ~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p------------------- 204 (570)
T 3b43_A 150 TSFIHN------VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP------------------- 204 (570)
T ss_dssp EEEETT------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECC-------------------
T ss_pred EEEECC------EEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCC-------------------
Confidence 222211 3689999999999999999999998877555555554332222211111
Q ss_pred CCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECC
Q psy17146 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g 342 (1011)
.+..+.+|+.++|.|.+.+.|.+ .++|+|+|
T Consensus 205 ------------------------------------------------~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~g 235 (570)
T 3b43_A 205 ------------------------------------------------VSVDLALGESGTFKCHVTGTAPI-KITWAKDN 235 (570)
T ss_dssp ------------------------------------------------CCBCCBSBSCEEEEEEEESSSCC-EEEEEETT
T ss_pred ------------------------------------------------ceeEecCCCeEEEEEEEEECCCC-EEEEEECC
Confidence 22345677777777777777665 78888887
Q ss_pred eecCCCc--------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCC-ceEecCCCcEEEEee
Q psy17146 343 QPVPAAA--------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPY-SVQVDRGAGVNLLCD 413 (1011)
Q Consensus 343 ~~l~~~~--------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~-~~~v~~G~~v~l~C~ 413 (1011)
..+..+. ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..+|.+...+. ...+.+|+.+.|.|.
T Consensus 236 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~ 314 (570)
T 3b43_A 236 REIRPGGNYKMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314 (570)
T ss_dssp EECCTTSSEEEEEETTEEEEEESSBCGG-GCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEE
T ss_pred EECcCCCcEEEEEECCEEEEEEcccCcc-cCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEE
Confidence 7765432 2468999999998 99999999999999999999999999999876554 346889999999999
Q ss_pred cCCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcc
Q psy17146 414 VDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484 (1011)
Q Consensus 414 ~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~ 484 (1011)
+.|.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|
T Consensus 315 ~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-------------------------- 368 (570)
T 3b43_A 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN-------------------------- 368 (570)
T ss_dssp EESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEB--------------------------
T ss_pred EeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEe--------------------------
Confidence 9999999999999985432 22345699999999999999999984
Q ss_pred cccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEE
Q psy17146 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564 (1011)
Q Consensus 485 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l 564 (1011)
..|....++.|.|..+|.|...|.+..+.+|+.+.|
T Consensus 369 --------------------------------------------~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l 404 (570)
T 3b43_A 369 --------------------------------------------AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 404 (570)
T ss_dssp --------------------------------------------TTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEE
T ss_pred --------------------------------------------CCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEE
Confidence 455566667778888999998899999999999999
Q ss_pred EEEEecCCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-
Q psy17146 565 LCDVDGNPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS- 634 (1011)
Q Consensus 565 ~C~~~g~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~- 634 (1011)
.|.+.|.|.|.+.|+|++..+... ...+|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.|..
T Consensus 405 ~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v~~~P~~~~~ 483 (570)
T 3b43_A 405 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN-DVGSDTCVGSITLKAPPRFVKK 483 (570)
T ss_dssp EEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEC-SSCEEEEEEEEEECCCCEEEEC
T ss_pred EEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEE-CCCeEEEEEEEEeccCCccccc
Confidence 999999999999999998543211 125799999999999999999999 678888999999999999884
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+.+..+.+|+.++|.|.+.|.|.| .|.|+|+|..+.. ...++.+.. .+..++|.|.++..+|+|.|+|.|.|.+
T Consensus 484 ~~~~~~~~g~~~~l~c~~~g~p~~-~v~W~k~~~~~~~-~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 557 (570)
T 3b43_A 484 LSDISTVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVR-ESDNIWISY----SENIATLQFSRAEPANAGKYTCQIKNEA 557 (570)
T ss_dssp CCCBCCBTTCCEEEEEEEESCSSC-CCEEEETTEECCC-CTTTEEECC----CSSEEEEEESSCCTTCCEEEEEEEECSS
T ss_pred CCCceecCCCeEEEEEEEecCCCC-EEEEEeCCeEecc-CCCeEEEEE----CCCEEEEEECcCCHHHCEEEEEEEEECC
Confidence 456778999999999999999999 9999999876643 344555543 2346799999999999999999999999
Q ss_pred CCeEEEEEEEec
Q psy17146 715 GSDSVEIMLKPQ 726 (1011)
Q Consensus 715 G~~~~~~~l~V~ 726 (1011)
|.++.++.|.|.
T Consensus 558 G~~~~~a~L~V~ 569 (570)
T 3b43_A 558 GTQECFATLSVL 569 (570)
T ss_dssp CEEEEEEEECCB
T ss_pred cEEEEEEEEEEe
Confidence 999999999874
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-64 Score=628.96 Aligned_cols=662 Identities=19% Similarity=0.301 Sum_probs=499.6
Q ss_pred eccceeecCCc-eeEEecCcEEEEEEEcC-CCCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC-
Q psy17146 26 REQKFAMEPQD-QTAVVGSRVTLPCRVID-KTGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD- 101 (1011)
Q Consensus 26 ~~p~~~~~p~~-~~v~~G~~v~L~C~v~~-~~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D- 101 (1011)
.+|.|..+|.+ +.+.+|++++|.|.+.+ +.+.+.|+| ||..+.... ....+.. ..+|.|.+++.+|
T Consensus 37 ~~P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~-----~~~~~~~-----~g~l~i~~~~~~~~ 106 (816)
T 3dmk_A 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-----GLRQISS-----DGKLVFPPFRAEDY 106 (816)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT-----TTBEECS-----TTEEEECCCCGGGC
T ss_pred CCCcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCC-----ceEEEee-----CCcEEEcCCChHHc
Confidence 45999999987 56888999999999996 788999999 776663211 1122221 2379999999887
Q ss_pred -----CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCce
Q psy17146 102 -----DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGT 174 (1011)
Q Consensus 102 -----~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~ 174 (1011)
+|.|+|.|.|..+ ...|..+.|.+...+.. ......+.+.+|+.+.|.|.+..+.|. +.+.|+|++..
T Consensus 107 ~~~~d~G~Y~C~a~n~~G---~~~S~~~~v~~~~~~~~--~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~ 181 (816)
T 3dmk_A 107 RQEVHAQVYACLARNQFG---SIISRDVHVRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE 181 (816)
T ss_dssp CHHHHEEEEEEEEEETTE---EEEEEEEEEEEECCCCC--CCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSC
T ss_pred cccccceEEEEEEecCcc---eEEccceEEEEEEcccc--EEEEecceEecCceEEEEECCCccccccEEEEEEEecCce
Confidence 8999999998642 22366677776654432 223345678899999999984333333 68999998876
Q ss_pred eeeceeEEEeeecCCceE-EEEEEEEEeeccCcCC-cEEEEEEEeCCCCceeE--EEEEEEEEeC-----CceEEEe-cC
Q psy17146 175 VMSNVRVTEEASVDGRRT-TVKSTLVLTPKKEHHN-TTFTCQAQNTADRTYKV--ARLKLLVKYA-----PKVQVSV-IG 244 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~-G~Y~C~a~n~~g~~~~s--~~v~v~v~~~-----P~~~~~~-~~ 244 (1011)
+.... ...++|.. ...+.|.|.+++.+|+ |.|+|.+.|..+..... ....+.+..+ |.+.... ..
T Consensus 182 ~~~~~-----~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~ 256 (816)
T 3dmk_A 182 NYFPG-----AEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256 (816)
T ss_dssp EECBS-----SCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEE
T ss_pred Eeccc-----cCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCcc
Confidence 64210 00112211 1123799999999999 99999999865543211 1123444332 3221100 02
Q ss_pred cceeecCceEEEEEEcccCCCccEEEEEeCCcccCC------cc----ccceEEEEeeecccCCcEEEEEEE--------
Q psy17146 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AA----SATELYLTNITRHQHDSIVKCEVQ-------- 306 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~------~~----~~~~l~i~~~~~~~~~~~~~c~~~-------- 306 (1011)
...+.+|+.++|.|.+.+.+. +.+.|++++..... .. ..+.|.|.++.. +|.|.|.|.+.
T Consensus 257 ~~~v~~g~~v~L~C~~~g~p~-p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 334 (816)
T 3dmk_A 257 MKTYSGSSTMALLCPAQGYPV-PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV-EDSGKYLCVVNNSVGGESV 334 (816)
T ss_dssp EEEECTTSCEEECCCCBCSSC-CEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCG-GGCEEEEEEEECSSCEEEE
T ss_pred ceEEeCCCeEEEEEEeeecCC-CeEEEEeCCCCCccCcceecCCceEeccceEEECCCCH-hHCEEEEEEEEcCCCceEE
Confidence 246789999999999998765 79999996543221 11 234566666654 55789999864
Q ss_pred ---EEe---------eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEc
Q psy17146 307 ---VSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN 374 (1011)
Q Consensus 307 ---~~~---------~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n 374 (1011)
+.+ .....+.+|+.++|.|.+.+.|.+ .+.|+|+|..+.. ....|.|.+++.+ |+|.|+|.|.|
T Consensus 335 ~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~~~~--~~~~L~i~~v~~~-d~G~Y~C~a~n 410 (816)
T 3dmk_A 335 ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGH--SESVLRIESVKKE-DKGMYQCFVRN 410 (816)
T ss_dssp EEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCC-EEEEEETTEECSC--CSSEEEESSCCGG-GCEEEEEEEEC
T ss_pred EEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCC-EEEEEECCEECCC--CCCEEEEcCCCHH-HCEEEEEEEEC
Confidence 111 134568899999999999999886 9999999999865 3568999999998 99999999999
Q ss_pred CCccceeeEEEEEE---ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeec----------cC----C
Q psy17146 375 DVGKSEDSETLDVT---YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NS----P 437 (1011)
Q Consensus 375 ~~g~~~~s~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~----~ 437 (1011)
..|....++.|.|. .+|.+...+.+..+.+|+.+.|.|.+.|+|.+.+.|++++..+... .. .
T Consensus 411 ~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 490 (816)
T 3dmk_A 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVS 490 (816)
T ss_dssp SSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEE
T ss_pred CCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEE
Confidence 99988888888874 4778888788889999999999999999999999999987543211 11 2
Q ss_pred cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee
Q psy17146 438 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG 517 (1011)
Q Consensus 438 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~ 517 (1011)
.|.|.+++.+|+|.|+|.|.|.. +.....+.|.|..+|.+.......+.+|+.+.|.|.+.+.|.+ .+.|+|++..+.
T Consensus 491 ~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~~~~l~ 568 (816)
T 3dmk_A 491 YLNITSVHANDGGLYKCIAKSKV-GVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPID-SIVWERDNRALP 568 (816)
T ss_dssp EEEESSCCTTTCEEEEEEEEETT-EEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEE-EEEEEETTEESC
T ss_pred EEEEeeccccCCEEEEEEEEECC-CeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCC-EEEEEECCeEcc
Confidence 48999999999999999999964 3456778888988888877777788899999999999988766 999999998652
Q ss_pred --------------------ccCCCceEE--EcCCCCC-cccEEEEEEecceeecC-CceEEEcCCCcEEEEEEEecCCC
Q psy17146 518 --------------------VGSSDDYSV--HNDVGKS-EDSETLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPA 573 (1011)
Q Consensus 518 --------------------~~~~~~y~~--~n~~G~~-~~~~~l~V~~~P~~~~~-p~~~~v~~G~~~~l~C~~~g~p~ 573 (1011)
..+.|.|+| .|..|.. .....+.|..+|.+... +....+.+|+.++|.|.+.+.+.
T Consensus 569 ~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~ 648 (816)
T 3dmk_A 569 INRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDL 648 (816)
T ss_dssp CSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSS
T ss_pred cCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCC
Confidence 246788886 6777753 44667778888876543 45667899999999999987766
Q ss_pred C-eEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeee
Q psy17146 574 P-EITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGI 641 (1011)
Q Consensus 574 p-~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~ 641 (1011)
+ .+.|+++|..+.. ...+.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.+. .+....+.
T Consensus 649 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~~~~~~~~~~v~ 727 (816)
T 3dmk_A 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN-LAGHQQFTTPLNVYVPPRWILEPTDKAFA 727 (816)
T ss_dssp CCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEEC-SSCEEEEEEEECEEEEEEEEECCCCEEEE
T ss_pred CCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEe-CCccEEEEEEEEEEeCCceeeecccceec
Confidence 5 9999999865421 2346799999999999999999999 67888889999999999987 45677889
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEeccc-----CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVG-----SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
+|+.++|.|.+.|.|.| .|+|+|++..+... ...++.+. .++|.|.+++.+|+|.|+|.|.|.+|+
T Consensus 728 ~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 798 (816)
T 3dmk_A 728 QGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVE--------EGTLHVDNIQKTNEGYYLCEAINGIGS 798 (816)
T ss_dssp TTCCEEEECEEEEESCC-EEECCEECSSSTTCCBCCCCBTTEEEE--------TTEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred CCCcEEEEEEEecCCCC-eEEEEecCCCCCccccccccCCCEEec--------CCEEEECcCChhhCeEEEEEEEeCCCC
Confidence 99999999999999999 99999987654321 11222221 258999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
+..++.+..
T Consensus 799 ~~~~v~~~~ 807 (816)
T 3dmk_A 799 GLSAVIMIS 807 (816)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999888764
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=589.87 Aligned_cols=583 Identities=20% Similarity=0.282 Sum_probs=447.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCccc-------------CCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRN-------------LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~-------------~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
|+++|.++.+.+|++|+|.|...+ +...+.|+|++........ ....+|..+.. +++|+|.
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~-----~~sL~I~ 76 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP-----NASLLIQ 76 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeecc-----CCcEEEC
Confidence 678899999999999999999765 4458999995432211000 00123444432 3489999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ...+..+.|.|...+..|.|.......+.+|+.+.|.|. +.+ |.+.++|+|++..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~-~~~-p~~~v~W~~~g~~l 151 (642)
T 1e07_A 77 NIIQNDTGFYTLHVIKSDL---VNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE-PET-QDATYLWWVNNQSL 151 (642)
T ss_pred CCCcccCcEEEEEEEcCCC---eEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEE-CCC-CCeeEEEEECCeEC
Confidence 9999999999999987532 224566788998877778887666667889999999999 556 89999999999888
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVR 255 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~ 255 (1011)
..+.++.... + .+.|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|...|......+
T Consensus 152 ~~~~~~~~~~--~------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~~~~~~~------------ 210 (642)
T 1e07_A 152 PVSPRLQLSN--G------NRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGPDAPTISP------------ 210 (642)
T ss_pred CCCCceEEcC--C------CCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCCCCcEEec------------
Confidence 6655443221 1 2489999999999999999999988764 35667777776554322111
Q ss_pred EEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccE
Q psy17146 256 LYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 335 (1011)
Q Consensus 256 L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~ 335 (1011)
.+..+.+|+.++|.|.+.+.|.+ .
T Consensus 211 -------------------------------------------------------~~~~~~~G~~~~l~C~~~g~p~~-~ 234 (642)
T 1e07_A 211 -------------------------------------------------------LNTSYRSGENLNLSCHAASNPPA-Q 234 (642)
T ss_pred -------------------------------------------------------CCcccccCCEEEEEEEcCCCCCc-E
Confidence 22346778888888888777776 9
Q ss_pred EEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCcccee--eEEEEEEec---ceEeeCCCceEecCCCcEEE
Q psy17146 336 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSED--SETLDVTYG---PRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 336 i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~--s~~l~V~~~---P~~~~~p~~~~v~~G~~v~l 410 (1011)
+.|+++|..+. ....|.|.++..+ |+|.|+|.|.|..|.... .+.|.|..+ |.+. .+....+..|+.+.|
T Consensus 235 i~W~~~g~~i~---~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l 309 (642)
T 1e07_A 235 YSWFVNGTFQQ---STQELFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVAL 309 (642)
T ss_pred EEEEECCeEcc---cCCceEEeccccc-CCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEE
Confidence 99999998884 3567999999998 999999999999887643 456666653 3333 233445666888999
Q ss_pred EeecCCCCCCceEEEeCCCcee-------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCee--ecc
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI--ISH 481 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~--~~~ 481 (1011)
.|.+.+.| +.+.|+|++..+. ......|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|.. ..+
T Consensus 310 ~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~ 388 (642)
T 1e07_A 310 TCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388 (642)
T ss_pred EEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecC
Confidence 99999887 7999999986532 2345789999999999999999999977666667778888766543 233
Q ss_pred CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee-----------ccCCCceEE--EcCCCCCcccEEE--EEEe---
Q psy17146 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDDYSV--HNDVGKSEDSETL--DVTY--- 543 (1011)
Q Consensus 482 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~-----------~~~~~~y~~--~n~~G~~~~~~~l--~V~~--- 543 (1011)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+. ..+.|.|+| .|..|....+..+ .|..
T Consensus 389 ~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~ 467 (642)
T 1e07_A 389 SYTYYRPGVNLSLSCHAASNPPA-QYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467 (642)
T ss_pred CceEecCCCcEEEEEEcCccCCC-eEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCC
Confidence 45567899999999999988877 999999998763 346788886 6888877766544 4443
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
+|.+.. +.+..+.+|+.++|.|.+.+ |.+.+.|+|++..+. ..++++|+|.++..+|+|.|+|.|.|..+.
T Consensus 468 ~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 545 (642)
T 1e07_A 468 KPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSA 545 (642)
T ss_pred CceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCC
Confidence 344433 45677889999999999994 889999999986542 233579999999999999999999994333
Q ss_pred ceeeEEEEEEcCCCe-ee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEE
Q psy17146 617 EVGAEATVYLKGRPT-II-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~-i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+..+.|.|..+|. +. .+....+.+|+.++|.|.+.|.|.| .|+|+|||..+.. ...|.
T Consensus 546 ~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~i~~-----------------~~~L~ 607 (642)
T 1e07_A 546 NRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP-QYSWRINGIPQQH-----------------TQVLF 607 (642)
T ss_pred ccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC-eEEEEECCEECcc-----------------CceEE
Confidence 345578899986654 33 4567789999999999999999999 9999999998752 14799
Q ss_pred EcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 695 IRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.++..+|+|.|+|.|.|.+|.++.++.|.|.
T Consensus 608 i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred ECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence 99999999999999999999999888887764
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-56 Score=560.23 Aligned_cols=582 Identities=19% Similarity=0.319 Sum_probs=452.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC--C--CeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK--T--GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~--~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
.+.|...+.++.+.+|++++|.|.+... . +.+.|++++..+... .....+|+.+..++ +|.|.+++.+|+
T Consensus 138 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~r~~~~~~g-----~L~I~~v~~~D~ 211 (816)
T 3dmk_A 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP-GAEYDGKYLVLPSG-----ELHIREVGPEDG 211 (816)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECB-SSCBTTTEEECTTS-----CEEESSCCGGGS
T ss_pred ccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEecc-ccCCCceEEEecCc-----eEEEecCChhhc
Confidence 4556677888999999999999998642 2 589999998654211 11134677775432 799999999999
Q ss_pred -ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC--CCeeecC---CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 103 -ARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG---DTLYTTEDREIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 103 -G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~--~~~i~~~---~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
|.|+|.+.+...+..........|.|..+.. +|.+... ....+.+|+.+.|.|. +.|.|.+.+.|+|++....
T Consensus 212 ~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~-~~g~p~p~v~W~k~~~~~~ 290 (816)
T 3dmk_A 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP-AQGYPVPVFRWYKFIEGTT 290 (816)
T ss_dssp SCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCC-CBCSSCCEEEEEEECTTSS
T ss_pred cceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEE-eeecCCCeEEEEeCCCCCc
Confidence 9999999876544333333445677766432 4444322 3567889999999999 7789999999999644322
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
.... ...+.+.....++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.. .+....+.+|+.++|
T Consensus 291 ~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~-~~~~~~v~~G~~v~l 363 (816)
T 3dmk_A 291 RKQA----VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE--SVETVLTVTAPLSAKI-DPPTQTVDFGRPAVF 363 (816)
T ss_dssp CEEE----CCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEECEEEEEEE-ESSEEECCTTSCEEE
T ss_pred cCcc----eecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCce--EEEEEEEEcCCCceee-CCCceEecCCCCEEE
Confidence 1111 11122233334589999999999999999999998865 4555666665554433 344567889999999
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEE-----------Ee------------eCCc
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV-----------SV------------IGSN 313 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~-----------~~------------~~~~ 313 (1011)
.|.+.+.+. +.+.|+++|+.+... ...|.|.++.. ++.|.|.|.+.. .+ ..+.
T Consensus 364 ~C~~~g~p~-~~v~W~k~g~~~~~~--~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~ 439 (816)
T 3dmk_A 364 TCQYTGNPI-KTVSWMKDGKAIGHS--ESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE 439 (816)
T ss_dssp EEEEEEECC-CEEEEEETTEECSCC--SSEEEESSCCG-GGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCE
T ss_pred EEEEeccCC-CEEEEEECCEECCCC--CCEEEEcCCCH-HHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcce
Confidence 999998765 799999999988654 34566666654 557899998642 11 1235
Q ss_pred ccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcC-------------ccEEEEeecccccCCcEEEEEEEcCCccce
Q psy17146 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS-------------ATELYLTNITRHQHDSIVKCEVHNDVGKSE 380 (1011)
Q Consensus 314 ~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~-------------~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~ 380 (1011)
.+.+|+.++|.|.+.+.|.+ .+.|+++|..+..... ...|.|.++..+ |+|.|+|.|.|..|..+
T Consensus 440 ~v~~G~~v~L~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~ 517 (816)
T 3dmk_A 440 TMEPGPSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVAE 517 (816)
T ss_dssp EECSSSCEEEEEEEECSSCC-EEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTT-TCEEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEEEecCCCC-EEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeecccc-CCEEEEEEEEECCCeEE
Confidence 67889999999999999887 9999999999865421 135999999998 99999999999999999
Q ss_pred eeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee------eccCCcEEEEeec-cCCCeEEE
Q psy17146 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTS-DDLAGRYY 453 (1011)
Q Consensus 381 ~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~-~~d~G~Y~ 453 (1011)
.++.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|+|++.... ...++.|.|.++. .+|+|.|+
T Consensus 518 ~~~~l~V~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~ 596 (816)
T 3dmk_A 518 HSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596 (816)
T ss_dssp EEEEEEECSSCEEC-CCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEE
T ss_pred EEEEEEEecCCeeE-ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEE
Confidence 99999999888654 3455678999999999999999999999999985432 3356789999997 69999999
Q ss_pred EEEEEcCCcceeeEEEEEEcCCCeeecc--CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee--------------
Q psy17146 454 CKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-------------- 517 (1011)
Q Consensus 454 C~a~n~~~~~~s~~~~v~v~~~p~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~-------------- 517 (1011)
|.|.|..+...+..+.+.+..+|.+... ....+.+|+.+.|.|.+.+.+.+..+.|+++|..+.
T Consensus 597 C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~ 676 (816)
T 3dmk_A 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676 (816)
T ss_dssp EEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTE
T ss_pred EEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCe
Confidence 9999987766777888888877776543 345678999999999999988888999999997652
Q ss_pred ---------ccCCCceEE--EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-
Q psy17146 518 ---------VGSSDDYSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK- 585 (1011)
Q Consensus 518 ---------~~~~~~y~~--~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~- 585 (1011)
..+.|.|+| .|..|....++.|.|..+|.|...|.+..+.+|+.++|.|.+.|.|.|.++|+|++...
T Consensus 677 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~ 756 (816)
T 3dmk_A 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756 (816)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSST
T ss_pred eEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCC
Confidence 235678876 79999999999999999999999999999999999999999999999999999986432
Q ss_pred -----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 586 -----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 586 -----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
....+++|.|.++..+|+|.|+|.|.| ..|.....+.+..+..+
T Consensus 757 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~v~~~~~~~~ 811 (816)
T 3dmk_A 757 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN-GIGSGLSAVIMISVQAH 811 (816)
T ss_dssp TCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEEC-SSSSCEEEEEEEEEEC-
T ss_pred ccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEe-CCCCCcEEEEEEEeecc
Confidence 112356899999999999999999999 67777777766655433
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-60 Score=591.19 Aligned_cols=612 Identities=19% Similarity=0.260 Sum_probs=113.0
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecC-CCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.+...+..+.+.+|++|+|.|.... .+.|++++..... ..|+.+.... .....+|.|.+++.+|+|.
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~---~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~ 100 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQR---DLDWLWPNNQSGS------EQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEeccC---CeeeeCCCCCCcc------CCceeEEEcCCCcEEEEEEECCCcHhhCEe
Confidence 5677776777889999999999999763 6899988753321 1233332211 1224589999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee----cCCeeeecCC--CcEEEEEEccCCCCCcEEEEEeC--Cceee
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV----QGDTLYTTED--REIELECISANGKPPAEITWIDG--TGTVM 176 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~----~~~~~~v~eg--~~v~L~C~~~~g~P~~~i~W~k~--~~~l~ 176 (1011)
|+|.+... ..+..+.|.|..+.. +.+. ....+.+.+| +.+.|.|.+ .+ |.+.++|+|+ +..+.
T Consensus 101 Y~C~~~~~------~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~v~~G~~~~v~L~C~~-~~-p~~~v~w~~~~~~~~~~ 171 (772)
T 3v2a_R 101 YKCFYRET------DLASVIYVYVQDYRS-PFIASVSDQHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFV 171 (772)
T ss_dssp --------------------------------------CEEEEEEESSCCCEEEECCCC-SC-SSCCEEEEEETTTEEEC
T ss_pred EEEEEcCC------CEEEEEEEEECCCCC-CceEcCcccceeEEEecCCCCeEEEEccC-CC-CCcEEEEEecCCCcccc
Confidence 99998732 134445666654433 3331 2246678889 889999994 33 8889999997 55554
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc--eEEEecCcceeecCceE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK--VQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~--~~~~~~~~~~v~~g~~v 254 (1011)
...... .......|.|.+++.+|+|.|+|.+.+... ...+..+.+.+...+. +.+.......+.+|+.+
T Consensus 172 ~~~~~~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v 242 (772)
T 3v2a_R 172 PDGNRI--------SWDSKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242 (772)
T ss_dssp CCSSSC--------EEETTTEEEEEGGGTTTCSEEEEEEEETTE-EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCE
T ss_pred CCCcee--------ecCCCCCeEecCCChhhCeEEEEEEEECCc-eEEEEEEEEEEecCccceeeeCCCCceEEecCCcE
Confidence 321110 111123699999999999999999997643 2223333444433332 22322222355566666
Q ss_pred EEEEEcccC-CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 255 RLYCKAEAN-PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 255 ~L~C~~~~~-~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
+|.|.+.+. .+...+.|++++..+.. +..
T Consensus 243 ~L~C~~~~~~~~~~~~~W~~~~~~~~~-------------------------------------~~~------------- 272 (772)
T 3v2a_R 243 VLNCTARTELNVGIDFNWEYPSSKHQH-------------------------------------KKL------------- 272 (772)
T ss_dssp EEEEEEEECTTCCCEEEEECC---------------------------------------------C-------------
T ss_pred EEEEEEecCCCCceeEEEecCCccCCC-------------------------------------cee-------------
Confidence 666666553 22345555554432210 000
Q ss_pred cEEEEEECCeec--CCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC---CceEecCCCcE
Q psy17146 334 MKYRWYINDQPV--PAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGV 408 (1011)
Q Consensus 334 ~~i~W~k~g~~l--~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p---~~~~v~~G~~v 408 (1011)
......... ........|.|.++..+ |+|.|+|.+.|..|..+..+.|.|..+|.+...+ ....+.+|+.+
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v 348 (772)
T 3v2a_R 273 ---VNRDLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348 (772)
T ss_dssp ---EEEEC-----CCCEEEEEEEEESSCCST-TCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------
T ss_pred ---eeccccccccccceEEEEEEEECcCCcC-CCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcE
Confidence 000000000 01123468999999998 9999999999999988889999999988765443 45678999999
Q ss_pred EEEeecCCCCCCceEEEeCCCceee----ccCCcEEEEeeccCCCeEEEEEEEEcCCc-ceeeEEEEEEcCCCeeecc--
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTIISH-- 481 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~v~v~~~p~~~~~-- 481 (1011)
.|.|.+.|+|.+.+.|+|++..... .....|.|.+++.+|+|.|+|.|.|..+. ..+..+.|.|..+|.+...
T Consensus 349 ~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~ 428 (772)
T 3v2a_R 349 RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL 428 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCccccccc
Confidence 9999999999999999999865432 23478999999999999999999996443 4466778888888876543
Q ss_pred --CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeE--------------------------------e-----------
Q psy17146 482 --RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE--------------------------------I----------- 516 (1011)
Q Consensus 482 --~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--------------------------------i----------- 516 (1011)
+...+.+|+.+.|.|.+.+.|.+..+.|++++.. +
T Consensus 429 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 508 (772)
T 3v2a_R 429 ISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeecc
Confidence 2234789999999999999988867999996211 1
Q ss_pred ------------eccCCCceEE--EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC
Q psy17146 517 ------------GVGSSDDYSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED 582 (1011)
Q Consensus 517 ------------~~~~~~~y~~--~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~ 582 (1011)
...+.|.|+| .|..|..+..+.|.|..+|.+...|. ..+.+|+.+.|.|.+.+.|.+.+.|+|++
T Consensus 509 ~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~ 587 (772)
T 3v2a_R 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLG 587 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceEEEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcC
Confidence 1135678876 78999999999999999998887775 45789999999999999999999999988
Q ss_pred Cceeec-----------------------------CCCcEEEeecCCCCCEEEEEEEEec-CCCceeeEE--EEEEcCCC
Q psy17146 583 SDKVVG-----------------------------NSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEA--TVYLKGRP 630 (1011)
Q Consensus 583 ~~~~~~-----------------------------~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~--~l~V~~~P 630 (1011)
..+... ....|+|.++..+|+|.|+|.|.|. +....+... .+.+..+|
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P 667 (772)
T 3v2a_R 588 PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP 667 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCC
Confidence 543210 1234999999999999999999993 222233334 44447788
Q ss_pred eeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 631 TIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 631 ~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.|.. +.+..+.+|+.++|.|.+.|.|.| .|+|+|||.++.. ..++.+.. ..++|.|.++..+|+|.|+|.
T Consensus 668 ~~~~~~~~~~v~~g~~~~l~C~~~g~P~p-~v~W~k~g~~l~~--~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~ 738 (772)
T 3v2a_R 668 TITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVE--DSGIVLKD------GNRNLTIRRVRKEDEGLYTCQ 738 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeecCCCceEEeCCCCEEEEEEeCccCCC-eEEEEECCeECcC--CCCeEEcC------CCcEEEECcCCHHHCEEEEEE
Confidence 8874 456778999999999999999999 9999999999874 23444332 247899999999999999999
Q ss_pred EEcCCCCeEEEEEEEecCC
Q psy17146 710 VSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|.+|.++.++.|.|.+.
T Consensus 739 a~N~~G~~~~~~~l~V~~~ 757 (772)
T 3v2a_R 739 ACSVLGCAKVEAFFIIEGA 757 (772)
T ss_dssp -------------------
T ss_pred EEeCCcceeEEEEEEEECC
Confidence 9999999999999998643
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-53 Score=504.57 Aligned_cols=440 Identities=22% Similarity=0.400 Sum_probs=344.2
Q ss_pred CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEE
Q psy17146 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212 (1011)
Q Consensus 134 ~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 212 (1011)
+|.+. ....+.+.+|+.+.|.|. +.|.|.+.++|+|++..+....++......+ .++|.|.+++.+|+|.|+
T Consensus 5 pP~f~~~~~~~~v~~G~~v~L~C~-~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 77 (570)
T 3b43_A 5 PPYFIEPLEHVEAAIGEPITLQCK-VDGTPEIRIAWYKEHTKLRSAPAYKMQFKNN------VASLVINKVDHSDVGEYT 77 (570)
T ss_dssp CCEEEECCCCEEECTTSCEEEEEE-EESSSSCEEEEECSSSBCCCCSSEEEECCTT------EEEEEESSCCGGGCEEEE
T ss_pred CCcceEECCceEEcCCCEEEEEEE-EccCCCCEEEEEECCEEccCCCCEEEEEECC------EEEEEEccCChhhCEEEE
Confidence 34443 445778899999999999 6799999999999999887655554332222 368999999999999999
Q ss_pred EEEEeCCCCceeEEEEEEEEEe-CCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEe
Q psy17146 213 CQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291 (1011)
Q Consensus 213 C~a~n~~g~~~~s~~v~v~v~~-~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~ 291 (1011)
|.|.|..|....+..+.+.... +|.+ ....
T Consensus 78 C~a~N~~g~~~~~~~l~v~~~~~~p~~-~~~~------------------------------------------------ 108 (570)
T 3b43_A 78 CKAENSVGAVASSAVLVIKERKLPPSF-ARKL------------------------------------------------ 108 (570)
T ss_dssp EEEEETTEEEEEEEEEEECCCCCCCEE-SSCC------------------------------------------------
T ss_pred EEEEeCCceEEEEEEEEECCCCCCCcc-cccC------------------------------------------------
Confidence 9999998876444333322111 1211 0001
Q ss_pred eecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc--------CccEEEEeeccccc
Q psy17146 292 ITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQ 363 (1011)
Q Consensus 292 ~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~--------~~~~L~I~~~~~~~ 363 (1011)
.+..+.+|+.++|.|.+.+.|.+ .++|+|||..+.... ....|.|.++...
T Consensus 109 -------------------~~~~~~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~- 167 (570)
T 3b43_A 109 -------------------KDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS- 167 (570)
T ss_dssp -------------------CCEEEETTSCEEEEEEEESSSSC-EEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGG-
T ss_pred -------------------CCeEecCCCeEEEEEEEccCCCC-EEEEEECCEECcCCCCEEEEEECCEEEEEECcCChH-
Confidence 12334567777777777777665 788888877775432 2367999999987
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEe---cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------- 432 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------- 432 (1011)
|+|.|+|.|.|..|..+.++.|.|.. +|.+...|....+.+|+.+.|.|.+.|.|.+.++|+|++..+.
T Consensus 168 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~ 247 (570)
T 3b43_A 168 HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT 247 (570)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEE
T ss_pred HCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEE
Confidence 99999999999999888888888864 6778888888899999999999999999999999999985432
Q ss_pred -eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEee
Q psy17146 433 -VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511 (1011)
Q Consensus 433 -~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 511 (1011)
......|.|.+++.+|+|.|+|.|.|..
T Consensus 248 ~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~--------------------------------------------------- 276 (570)
T 3b43_A 248 LVENTATLTVLKVTKGDAGQYTCYASNVA--------------------------------------------------- 276 (570)
T ss_dssp EETTEEEEEESSBCGGGCEEEEEEEEETT---------------------------------------------------
T ss_pred EECCEEEEEEcccCcccCEEEEEEEECCC---------------------------------------------------
Confidence 2234579999999999999999999743
Q ss_pred CCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---
Q psy17146 512 RGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--- 587 (1011)
Q Consensus 512 ~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--- 587 (1011)
|..+.++.|.|..+|.|...+. ...+.+|+.+.|.|.+.|.|.+.+.|+|++..+..
T Consensus 277 -------------------g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~ 337 (570)
T 3b43_A 277 -------------------GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337 (570)
T ss_dssp -------------------EEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSS
T ss_pred -------------------CcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCc
Confidence 2233334445555666554433 34578999999999999999999999999865422
Q ss_pred ------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCe
Q psy17146 588 ------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEK 660 (1011)
Q Consensus 588 ------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~ 660 (1011)
...+.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.| .
T Consensus 338 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~ 415 (570)
T 3b43_A 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF-Q 415 (570)
T ss_dssp EEEEEETTEEEEEEESCCGGGCEEEEEEEEB-TTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSC-C
T ss_pred EEEEEECCEEEEEECCCCcccCEEEEEEEEe-CCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCC-E
Confidence 2346799999999999999999999 677888899999999999884 456778899999999999999999 9
Q ss_pred EEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 661 VTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 661 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|+|+|+|..+. ...++.+.. ++..++|.|.++..+|+|.|+|.|.|.+|+++..+.|.|..+
T Consensus 416 v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 477 (570)
T 3b43_A 416 VSWHKDKRELR--SGKKYKIMS----ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477 (570)
T ss_dssp CEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC
T ss_pred EEEEECCEECc--CCCCEEEEE----cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccC
Confidence 99999999987 445666654 334578999999999999999999999999999999988654
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=495.35 Aligned_cols=483 Identities=22% Similarity=0.381 Sum_probs=373.5
Q ss_pred ceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCC
Q psy17146 36 DQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILG 115 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 115 (1011)
...+.+|++++|.|.+.++.+.+.|++++..+.. ..|+.+..+ ..+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 120 ~~~v~~g~~v~l~C~~~~p~~~v~W~~~g~~l~~------~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 189 (642)
T 1e07_A 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPV------SPRLQLSNG----NRTLTLFNVTRNDTASYKCETQNPVSA 189 (642)
T ss_pred ceeEecCCcEEEEEECCCCCeeEEEEECCeECCC------CCceEEcCC----CCEEEEeCCCcccCeeEEEEEecCCCC
Confidence 4568899999999999998889999999977642 345555322 247999999999999999999986432
Q ss_pred CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEE
Q psy17146 116 EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195 (1011)
Q Consensus 116 ~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~ 195 (1011)
..+..+.|+|...|..+.+.. ....+.+|+.+.|.|. +.|+|.+.++|+|++..+.. .
T Consensus 190 ---~~s~~~~l~V~~~p~~~~~~~-~~~~~~~G~~~~l~C~-~~g~p~~~i~W~~~g~~i~~-----------------~ 247 (642)
T 1e07_A 190 ---RRSDSVILNVLYGPDAPTISP-LNTSYRSGENLNLSCH-AASNPPAQYSWFVNGTFQQS-----------------T 247 (642)
T ss_pred ---cccceEEEEEEeCCCCcEEec-CCcccccCCEEEEEEE-cCCCCCcEEEEEECCeEccc-----------------C
Confidence 245678899998777666643 3556789999999999 68999999999998876521 2
Q ss_pred EEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc-eEEEecCcceeecCceEEEEEEcccCCCccEEEEEeC
Q psy17146 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK-VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 274 (1011)
Q Consensus 196 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~-~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~ 274 (1011)
+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|...|. ..+.......+..|
T Consensus 248 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g----------------------- 304 (642)
T 1e07_A 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE----------------------- 304 (642)
T ss_pred CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecC-----------------------
Confidence 469999999999999999999999877666677777765432 22222222223334
Q ss_pred CcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC------
Q psy17146 275 DQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA------ 348 (1011)
Q Consensus 275 ~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~------ 348 (1011)
+.+.|.|.+.+.| ..+.|+|+|..+...
T Consensus 305 --------------------------------------------~~v~l~C~~~~~p--~~v~W~~~g~~l~~~~~~~~~ 338 (642)
T 1e07_A 305 --------------------------------------------DAVALTCEPEIQN--TTYLWWVNNQSLPVSPRLQLS 338 (642)
T ss_pred --------------------------------------------CcEEEEEECCCCC--ccEEEEECCccCCCcCCEEEe
Confidence 4455555554443 155555555554332
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEEEecceE-eeCCCceEecCCCcEEEEeecCCCCCCceEEEe
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~P~~-~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k 426 (1011)
..+..|.|.++..+ |+|.|+|.|.|..|.. +..+.|.|..+|.+ ...+....+.+|+.+.|.|.+.|+|.+.+.|+|
T Consensus 339 ~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~ 417 (642)
T 1e07_A 339 NDNRTLTLLSVTRN-DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417 (642)
T ss_pred CCCCEEEEeccCcc-cCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEE
Confidence 23468999999997 9999999999999875 56788999887753 456777889999999999999999999999999
Q ss_pred CCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcC---CCeeeccCcccccCCCeEEEEeEeeeCC
Q psy17146 427 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIP 502 (1011)
Q Consensus 427 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~~~~ 502 (1011)
++..+ .....|.|.++..+|+|.|+|.|.|..+ ...+..+.|.+.. +|.+.......+.+|+.+.|.|.+.+ +
T Consensus 418 ~g~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~ 494 (642)
T 1e07_A 418 DGNIQ--QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-Q 494 (642)
T ss_pred CCEEc--CCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-C
Confidence 98544 3456799999999999999999999643 3444556677654 45555555566789999999999993 4
Q ss_pred CCCeeEEeeCCeEee--------------------ccCCCceEE--EcCCCCCcc-cEEEEEEecc-eeecCCceEEEcC
Q psy17146 503 PPEKVTWSYRGEEIG--------------------VGSSDDYSV--HNDVGKSED-SETLDVTYGP-RFRARPYSVQVDR 558 (1011)
Q Consensus 503 ~~~~v~W~~~~~~i~--------------------~~~~~~y~~--~n~~G~~~~-~~~l~V~~~P-~~~~~p~~~~v~~ 558 (1011)
+..+.|+++|..+. ..|.|.|+| .|..|.... .+.|.|..+| .+...|.+..+.+
T Consensus 495 -~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~ 573 (642)
T 1e07_A 495 -NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS 573 (642)
T ss_pred -CcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEc
Confidence 45999999998663 235788886 688887644 6899998766 4667788899999
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
|+.++|.|.+.|.|.|.+.|+|+|..+ ..+..|.|.++..+|+|.|+|.|.| ..|..+.++.|.|.
T Consensus 574 g~~~~l~C~~~g~p~p~v~W~~~g~~i--~~~~~L~i~~~~~~d~G~Y~C~a~N-~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 574 GANLNLSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFVSN-LATGRNNSIVKSIT 639 (642)
T ss_pred CCcEEEEEEeccCCCCeEEEEECCEEC--ccCceEEECcccccCCeEEEEEEEe-cccCcceeEEEEEE
Confidence 999999999999999999999998654 3457899999999999999999999 56666666666664
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=482.77 Aligned_cols=512 Identities=17% Similarity=0.238 Sum_probs=125.2
Q ss_pred cCCceeEEec--CcEEEEEEEcCCCCeeEEeeC--CeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 33 EPQDQTAVVG--SRVTLPCRVIDKTGVLQWTKD--DFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 33 ~p~~~~v~~G--~~v~L~C~v~~~~~~v~W~k~--~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
.+..+.+.+| ++|+|.|.+.++...+.|+++ +..+... ..+.... ....|.|.+++.+|+|.|+|.
T Consensus 132 ~~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~-----~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~ 201 (772)
T 3v2a_R 132 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD-----GNRISWD-----SKKGFTIPSYMISYAGMVFCE 201 (772)
T ss_dssp CEEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCC-----SSSCEEE-----TTTEEEEEGGGTTTCSEEEEE
T ss_pred cceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCC-----CceeecC-----CCCCeEecCCChhhCeEEEEE
Confidence 3566788899 999999999998889999997 5443211 1122221 123699999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCC-eeecCCeeeecCCCcEEEEEEccCC-CCCcEEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPP-RIVQGDTLYTTEDREIELECISANG-KPPAEITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~-~i~~~~~~~v~eg~~v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.+... ...+....+.+...+.+. .+.....+.+.+|+.+.|.|.+... .|.+.+.|++++..+...........
T Consensus 202 ~~~~~~---~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 278 (772)
T 3v2a_R 202 AKINDE---SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278 (772)
T ss_dssp EEETTE---EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-
T ss_pred EEECCc---eEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccc
Confidence 987421 223344555555433222 2233345688999999999994322 56789999999887655332221111
Q ss_pred --cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEe--cCcceeecCceEEEEEEccc
Q psy17146 187 --VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV--IGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 187 --~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~--~~~~~v~~g~~v~L~C~~~~ 262 (1011)
.........+.|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|.+.... .....+.+|+.++|.|.+.+
T Consensus 279 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~ 356 (772)
T 3v2a_R 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG 356 (772)
T ss_dssp ----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEE--EEEEEEEEECCCC---------------------------
T ss_pred ccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcce--eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEee
Confidence 111234456799999999999999999999987754 667777887777654433 23456889999999999998
Q ss_pred CCCccEEEEEeCCcccCCccc---cceEEEEeeecccCCcEEEEEEEEEe-------------e------------CCcc
Q psy17146 263 NPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHDSIVKCEVQVSV-------------I------------GSNR 314 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~---~~~l~i~~~~~~~~~~~~~c~~~~~~-------------~------------~~~~ 314 (1011)
.++ +.+.|+++|+.+..... ...|.|.++.. ++.|.|.|.+.... . ....
T Consensus 357 ~p~-~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~ 434 (772)
T 3v2a_R 357 YPP-PEIKWYKNGIPLESNHTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCC-CeEEEEECCEeCCCCceEccceeEEEecCCh-hcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccc
Confidence 665 68999999998876432 24555655544 56788999765321 0 0123
Q ss_pred cccCCcEEEEEEeecCCCccEEEEEECCee--------------------------------cCCC-----------cCc
Q psy17146 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQP--------------------------------VPAA-----------ASA 351 (1011)
Q Consensus 315 v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~--------------------------------l~~~-----------~~~ 351 (1011)
+.+|+.++|.|.+.+.|.+..+.|++++.. +... ...
T Consensus 435 ~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 514 (772)
T 3v2a_R 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEE
Confidence 788999999999999998745999997322 1110 112
Q ss_pred cEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce
Q psy17146 352 TELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431 (1011)
Q Consensus 352 ~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~ 431 (1011)
..|.|.++ + |+|.|+|.|.|..|..+..+.|.|..+|.+...|. ..+.+|+.+.|.|.+.+.|.+.+.|+|++...
T Consensus 515 ~~L~i~~~--~-d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~ 590 (772)
T 3v2a_R 515 STLVIQAA--N-VSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQP 590 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeec--c-cCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcc
Confidence 46777776 3 89999999999999999999999999888877665 35889999999999999999999999987543
Q ss_pred eec-----------------------------cCCcEEEEeeccCCCeEEEEEEEEc-CCcceeeEEEEEEcCCCeeecc
Q psy17146 432 VVG-----------------------------NSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISH 481 (1011)
Q Consensus 432 ~~~-----------------------------~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~v~v~~~p~~~~~ 481 (1011)
... ....|.|.+++.+|+|.|+|.|.|. ++...+....+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l----------- 659 (772)
T 3v2a_R 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL----------- 659 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEee-----------
Confidence 210 1224999999999999999999983 22221112222
Q ss_pred CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCc
Q psy17146 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG 561 (1011)
Q Consensus 482 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~ 561 (1011)
.+.+..+|.|...+.+..+.+|+.
T Consensus 660 --------------------------------------------------------~v~~~~~P~~~~~~~~~~v~~g~~ 683 (772)
T 3v2a_R 660 --------------------------------------------------------TVLERVAPTITGNLENQTTSIGES 683 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------cccccCCCEeecCCCceEEeCCCC
Confidence 122346777887788888999999
Q ss_pred EEEEEEEecCCCCeEEEEecCCceeec-------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKVVG-------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
++|.|.+.|.|.|.++|+|+|..+... .+++|.|.++..+|+|.|+|.|.| ..|..+..+.|.|.++|...
T Consensus 684 ~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~~~p~~~ 761 (772)
T 3v2a_R 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS-VLGCAKVEAFFIIEGAQEKT 761 (772)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEe-CCcceeEEEEEEEECCCCcc
Confidence 999999999999999999998655332 367999999999999999999999 68888899999999988754
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=453.15 Aligned_cols=421 Identities=18% Similarity=0.239 Sum_probs=292.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
+|.|...+.++.+.+|++++|.|.+.+ .+.|+|++..+. . .....+|+|.+++.+|+|.|+
T Consensus 36 pP~i~~~~~~~~v~~G~~v~l~C~~~~---~v~W~~~~~~~~----------~------~~~~~~L~I~~~~~~D~G~Y~ 96 (524)
T 2ec8_A 36 PPSIHPGKSDLIVRVGDEIRLLCTDPG---FVKWTFEILDET----------N------ENKQNEWITEKAEATNTGKYT 96 (524)
T ss_dssp CCEEESCCSEEECCTTSCEEEEEECTT---EEEEEEESSSCC----------E------EECSSEEEESSCCSTTCEEEE
T ss_pred CCccCCCCceEEEeCCCeEEEEEeCCc---eEEEcCCCcccc----------c------cCccceEEEcccchhhCEEEE
Confidence 455556777899999999999999986 899999997551 0 113348999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEe-CCceeeeceeEEEee
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWID-GTGTVMSNVRVTEEA 185 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k-~~~~l~~~~~~~~~~ 185 (1011)
|.+.+ + .+..+.|.|..++... .....+.+.+|+.+.|.|. +.+.|.+.++|+| ++..+..+.++...
T Consensus 97 C~a~n---g----~~~~~~l~V~~p~~~~--~~~~~~~v~~G~~v~l~C~-~~~~~~~~v~W~~~~g~~l~~~~~~~~~- 165 (524)
T 2ec8_A 97 CTNKH---G----LSNSIYVFVRDPAKLF--LVDRSLYGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPD- 165 (524)
T ss_dssp EEETT---S----CEEEEEEECCCSSCSB--CCCCCCCEETTSCEEECCC-BSCCCCSCEEEECSSSCCCCSSCEEEEE-
T ss_pred EeecC---C----cceEEEEEECCCCccc--ccccceEEEcCCeEEEECc-CCCCccceEEEEccCCcCcCCCCceeEC-
Confidence 99987 2 2566777777655432 4445677889999999999 5676778999998 66666555444321
Q ss_pred ecCCceEEEEEEEEEeeccCcCCc-EEEEEEEeCCCCceeEEEEEEEEE----eCCceEEEecCcceeecCceEEEEEEc
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVK----YAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~n~~g~~~~s~~v~v~v~----~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
.+ ..|.|.+++.+|+| .|+|.|.|..+.. .+..+.|.|. .+|.+.. ......+
T Consensus 166 -~~-------~~L~i~~~~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~-~~~~~~v------------ 223 (524)
T 2ec8_A 166 -PK-------AGIMIKSVKRAYHRLCLHCSVDQEGKSV-LSEKFILKVRPAFKAVPVVSV-SKASYLL------------ 223 (524)
T ss_dssp -TT-------TEEEEESCCGGGTTCEEEEEEC----CC-CCCCEECCEECCCCSCCEEEC-SCSEEEE------------
T ss_pred -CC-------ccEEEeccchhhCCceEEEEEEECCceE-EEEEEEEEEEeCCCCCCcEEe-cCCcceE------------
Confidence 22 26999999999999 9999999986654 2345566665 2333321 1122234
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
.+|+.++|.|.+.+.|.+..+.|+|
T Consensus 224 -------------------------------------------------------~~G~~v~L~C~~~g~p~p~~i~W~~ 248 (524)
T 2ec8_A 224 -------------------------------------------------------REGEEFTVTCTIKDVSSSVYSTWKR 248 (524)
T ss_dssp -------------------------------------------------------ETTSCEEEEEEEEESSTTCEEEEEE
T ss_pred -------------------------------------------------------EcCCcEEEEEEEecCCCcEEEEEEe
Confidence 4455555555555444443355555
Q ss_pred CCeec--CC-----------CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC---CceEecC
Q psy17146 341 NDQPV--PA-----------AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDR 404 (1011)
Q Consensus 341 ~g~~l--~~-----------~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p---~~~~v~~ 404 (1011)
++..+ .. ......|.|.++..+ |+|.|+|.|.|..|..+..+.|.|..+|.+...+ ....+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~ 327 (524)
T 2ec8_A 249 ENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327 (524)
T ss_dssp TTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTT-TCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECT
T ss_pred CCCCCccccccccccccCCccceEEEEEECCCCHH-HCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcC
Confidence 55442 10 123578999999987 9999999999999999889999999999887654 4688999
Q ss_pred CCcEEEEeecCCCCCCc-eEEEeCCCceeec--------------cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 405 GAGVNLLCDVDGNPAPE-ITWIHEDSDKVVG--------------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 405 G~~v~l~C~~~g~p~p~-v~W~k~~~~~~~~--------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
|+.+.|.|.+.|+|.|. +.|+|++..+... ....|.|.+++.+|+|.|+|.|.|..
T Consensus 328 G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~--------- 398 (524)
T 2ec8_A 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD--------- 398 (524)
T ss_dssp TCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSS---------
T ss_pred CCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecC---------
Confidence 99999999999999999 9999998653321 12479999999999999999999643
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
|....++.|.|..+|.+..
T Consensus 399 -------------------------------------------------------------g~~~~~~~l~V~~~P~i~~ 417 (524)
T 2ec8_A 399 -------------------------------------------------------------VNAAIAFNVYVNTKPEILT 417 (524)
T ss_dssp -------------------------------------------------------------CEEEEEEEEEECEEEEEEE
T ss_pred -------------------------------------------------------------ceEEEEEEEEEecCCeEee
Confidence 3333344445555565554
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEE----eecCCCCCEEEEE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTL----LMTSDDLAGRYYC 608 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I----~~v~~~d~G~Y~C 608 (1011)
.+. ..+| +|.|.+.|.|.|.++|+|++..+. ....+.|.+ .....+|+|.|+|
T Consensus 418 ~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C 491 (524)
T 2ec8_A 418 YDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491 (524)
T ss_dssp EEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----C
T ss_pred ccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEE
Confidence 433 3455 999999999999999999975431 133455653 3334699999999
Q ss_pred EEEecCCCceeeEEEEEEcCCCee
Q psy17146 609 KASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
.|.| ..|..+..+.|.|+++|.-
T Consensus 492 ~a~N-~~G~~~~~~~l~V~e~~~~ 514 (524)
T 2ec8_A 492 KAYN-DVGKTSAYFNFAFKGNNKE 514 (524)
T ss_dssp EEEC-SSCEEECCCCCCC------
T ss_pred EEEc-CCCceEEEEEEEEecCCHH
Confidence 9999 6888888899999877653
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=441.84 Aligned_cols=431 Identities=18% Similarity=0.248 Sum_probs=298.2
Q ss_pred EEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEe
Q psy17146 123 FATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201 (1011)
Q Consensus 123 ~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 201 (1011)
.+.|.|..+ |.|. ..+.+.+.+|+.+.|.|. +.+ .++|+|++..+. .... .++|.|.
T Consensus 28 ~i~l~v~~p---P~i~~~~~~~~v~~G~~v~l~C~-~~~----~v~W~~~~~~~~-------~~~~-------~~~L~I~ 85 (524)
T 2ec8_A 28 SVSPGEPSP---PSIHPGKSDLIVRVGDEIRLLCT-DPG----FVKWTFEILDET-------NENK-------QNEWITE 85 (524)
T ss_dssp -----CCCC---CEEESCCSEEECCTTSCEEEEEE-CTT----EEEEEEESSSCC-------EEEC-------SSEEEES
T ss_pred eEEcCCCCC---CccCCCCceEEEeCCCeEEEEEe-CCc----eEEEcCCCcccc-------ccCc-------cceEEEc
Confidence 355566544 3454 345778999999999999 444 999999988661 0111 2489999
Q ss_pred eccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCc
Q psy17146 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 281 (1011)
Q Consensus 202 ~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~ 281 (1011)
+++.+|+|.|+|.|.| |. +..+.|.|..+|... .......+.+|+.++|.|.+.+.+ .+.+.|++.
T Consensus 86 ~~~~~D~G~Y~C~a~n--g~---~~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~------- 151 (524)
T 2ec8_A 86 KAEATNTGKYTCTNKH--GL---SNSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGC------- 151 (524)
T ss_dssp SCCSTTCEEEEEEETT--SC---EEEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCC-CSCEEEECS-------
T ss_pred ccchhhCEEEEEeecC--Cc---ceEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCc-cceEEEEcc-------
Confidence 9999999999999998 42 666777777666544 223333455555555555555432 244444440
Q ss_pred cccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-----cCccEEEE
Q psy17146 282 ASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYL 356 (1011)
Q Consensus 282 ~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-----~~~~~L~I 356 (1011)
||..+..+ .....|.|
T Consensus 152 -----------------------------------------------------------~g~~l~~~~~~~~~~~~~L~i 172 (524)
T 2ec8_A 152 -----------------------------------------------------------QGKPLPKDLRFIPDPKAGIMI 172 (524)
T ss_dssp -----------------------------------------------------------SSCCCCSSCEEEEETTTEEEE
T ss_pred -----------------------------------------------------------CCcCcCCCCceeECCCccEEE
Confidence 44443321 22457999
Q ss_pred eecccccCCc-EEEEEEEcCCccc-eeeEEEEEE----ecceEeeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCC
Q psy17146 357 TNITRHQHDS-IVKCEVHNDVGKS-EDSETLDVT----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDS 429 (1011)
Q Consensus 357 ~~~~~~~d~G-~Y~C~a~n~~g~~-~~s~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~ 429 (1011)
.++..+ |+| .|+|.|.|..|.. +..+.|.|. .+|.+...+.+..+.+|+.+.|.|.+.|.|.+. +.|+|++.
T Consensus 173 ~~~~~~-d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~ 251 (524)
T 2ec8_A 173 KSVKRA-YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251 (524)
T ss_dssp ESCCGG-GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTC
T ss_pred eccchh-hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCC
Confidence 999998 999 9999999987765 458889887 688898989888999999999999999999887 99999987
Q ss_pred ce--e------------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEE
Q psy17146 430 DK--V------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVE 495 (1011)
Q Consensus 430 ~~--~------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~ 495 (1011)
.. . ......|.|.+++.+|+|.|+|.|.|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----------------------------------- 296 (524)
T 2ec8_A 252 QTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF----------------------------------- 296 (524)
T ss_dssp SCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSS-----------------------------------
T ss_pred CCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecC-----------------------------------
Confidence 62 1 2234679999999999999999999643
Q ss_pred eEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCC---ceEEEcCCCcEEEEEEEecCC
Q psy17146 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGNP 572 (1011)
Q Consensus 496 C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p---~~~~v~~G~~~~l~C~~~g~p 572 (1011)
|.....+.|.|..+|.+...| ....+.+|+.++|.|.+.|.|
T Consensus 297 -----------------------------------g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P 341 (524)
T 2ec8_A 297 -----------------------------------GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341 (524)
T ss_dssp -----------------------------------CEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEES
T ss_pred -----------------------------------CceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecC
Confidence 222333444555555554433 468899999999999999999
Q ss_pred CCe-EEEEecCCceeecC--------------CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCc
Q psy17146 573 APE-ITWIHEDSDKVVGN--------------SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRT 637 (1011)
Q Consensus 573 ~p~-v~W~k~~~~~~~~~--------------~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~ 637 (1011)
.|. +.|+|++..+.... ...|.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.|.....
T Consensus 342 ~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~i~~~~~ 420 (524)
T 2ec8_A 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN-SDVNAAIAFNVYVNTKPEILTYDR 420 (524)
T ss_dssp CCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEEC-SSCEEEEEEEEEECEEEEEEEEEC
T ss_pred CCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEe-cCceEEEEEEEEEecCCeEeeccc
Confidence 999 99999986543221 25899999999999999999999 677889999999999999885432
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc------CCCCeEEecCCcCcccee-EEEEcCCCCCCCEEEEEEE
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG------SSDDYSVLEDPLKEGIKS-TLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~------~~~~~~~~~~~~~~~~~~-~L~I~~~~~~d~G~Y~C~a 710 (1011)
..+| +|.|.+.|.|.| .|+|+++|..+... .+.+...... ...+... ...|.....+|+|.|+|.|
T Consensus 421 --~~~g---~l~C~~~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~s~l~~~~~~d~G~Y~C~a 493 (524)
T 2ec8_A 421 --LVNG---MLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSG-PPFGKLVVQSSIDSSAFKHNGTVECKA 493 (524)
T ss_dssp --CSSS---CEEEEEEEESCC-EEECCCC----------CCCCCCCCCCC-C-CSSSCEEEEEEECCCSCCC-----CEE
T ss_pred --CcCc---EEEEEEEeecCC-EEEEEECCCcccccccccCCCCceeeeecc-CCCCcceEEEEEEEEEccCCEEEEEEE
Confidence 3455 999999999999 99999998766310 1111111110 1112111 1123444469999999999
Q ss_pred EcCCCCeEEEEEEEecC
Q psy17146 711 SNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 711 ~N~~G~~~~~~~l~V~~ 727 (1011)
.|.+|.++..+.|.|.+
T Consensus 494 ~N~~G~~~~~~~l~V~e 510 (524)
T 2ec8_A 494 YNDVGKTSAYFNFAFKG 510 (524)
T ss_dssp ECSSCEEECCCCCCC--
T ss_pred EcCCCceEEEEEEEEec
Confidence 99999999999998864
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=428.32 Aligned_cols=465 Identities=15% Similarity=0.196 Sum_probs=323.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC-C---eeEEeeCCeecCCcc--------cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT-G---VLQWTKDDFALGPHR--------NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~-~---~v~W~k~~~~l~~~~--------~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
..|+++.+.+|++|+|.|.+.+.. + .+.|+|++..+.... .....+|+.+......+.++|+|.+++.
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~ 84 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84 (585)
T ss_pred cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence 467889999999999999998742 2 799999986431000 1112357777665456778999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS-- 177 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~-- 177 (1011)
+|+|.|+|.+.+.... .+..+.|.|..+|.. ......+.+.+|+.+.|.|.+..+.|.+.+.|+|++.....
T Consensus 85 ~D~G~Y~C~~~n~~~~----~~~~~~l~V~~~p~~--~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~ 158 (585)
T 2ocw_A 85 DDSGRYKCGLGINSRG----LSFDVSLEVSQGPGL--LNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV 158 (585)
T ss_pred ccCEEEEEEcccCCCC----ceEEEEEEEecCccc--cCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEE
Confidence 9999999999875432 456688888876542 33445777899999999999554566788999998865321
Q ss_pred --ceeEEEeeecCCce-EE------EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCccee
Q psy17146 178 --NVRVTEEASVDGRR-TT------VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL 248 (1011)
Q Consensus 178 --~~~~~~~~~~~~~~-~~------~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v 248 (1011)
.... ......++. +. ...+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.. ...+
T Consensus 159 ~~~~~~-~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~p~------~~~~ 229 (585)
T 2ocw_A 159 IDSSGY-VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN--KKNADLQVLKPEPE------LVYE 229 (585)
T ss_pred ecCCcc-cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc--cceEEEEEccCCCc------eeEE
Confidence 1000 000001111 11 12379999999999999999999988876 45556666554422 1245
Q ss_pred ecCceEEEEEEcccCCCc-cEEEEE-eCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEE
Q psy17146 249 VEGTDVRLYCKAEANPSH-MKYRWY-INDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326 (1011)
Q Consensus 249 ~~g~~v~L~C~~~~~~~~-~~i~W~-~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~ 326 (1011)
.+|+.+.|.|.+...++. +.+.|+ +++........
T Consensus 230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~------------------------------------------- 266 (585)
T 2ocw_A 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVN------------------------------------------- 266 (585)
T ss_pred cCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEe-------------------------------------------
Confidence 689999999997554443 688886 77643211000
Q ss_pred eecCCCccEEEEEECCe-ecCCC--cCccEEEEeecccccCCcEEEEEEEcCCccce-----eeEEEEEEecceEeeCCC
Q psy17146 327 AEANPSHMKYRWYINDQ-PVPAA--ASATELYLTNITRHQHDSIVKCEVHNDVGKSE-----DSETLDVTYGPRFRARPY 398 (1011)
Q Consensus 327 ~~~~p~~~~i~W~k~g~-~l~~~--~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~P~~~~~p~ 398 (1011)
..+.. .+..+++ .+... .....|.|.++..+ |+|.|+|.|.|. |... ..+.|.|..+|.+...+.
T Consensus 267 ~~~~~-----~~~~~~~~~~~~~~~~g~~~L~i~~v~~~-d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~ 339 (585)
T 2ocw_A 267 TLGKR-----APAFEGRILLNPQDKDGSFSVVITGLRKE-DAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPT 339 (585)
T ss_pred CCCcC-----CcccCCceEeeccCCCcEEEEEEccCChh-hCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCc
Confidence 00000 0000000 01110 12237999999998 999999999995 4443 788999999999988889
Q ss_pred ceEecCCCcEEEEeecCCCCCCce----EEEe--CCC--ceee---------------c---cCC--cEEEEeeccCCCe
Q psy17146 399 SVQVDRGAGVNLLCDVDGNPAPEI----TWIH--EDS--DKVV---------------G---NSP--NLTLLMTSDDLAG 450 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p~p~v----~W~k--~~~--~~~~---------------~---~~~--~L~I~~v~~~d~G 450 (1011)
...+.+|+.+.|.|.+.+.|.+.+ .|++ ++. .+.. . ..+ .|.|.+++.+|+|
T Consensus 340 ~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G 419 (585)
T 2ocw_A 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAG 419 (585)
T ss_pred ceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCE
Confidence 999999999999999999999987 7999 765 2211 0 122 2899999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.| |..
T Consensus 420 ~Y~C~a-n~~---------------------------------------------------------------------- 428 (585)
T 2ocw_A 420 FYWCLT-NGD---------------------------------------------------------------------- 428 (585)
T ss_pred EEEEcc-cCC----------------------------------------------------------------------
Confidence 999998 532
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEe----cCCCCeEEEEecCCceeec----------------CC
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD----GNPAPEITWIHEDSDKVVG----------------NS 590 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~----g~p~p~v~W~k~~~~~~~~----------------~~ 590 (1011)
|.....+.|.|..+|.....+....+.+|+.++|.|.+. +.|.+.+.|+|+|..+... ..
T Consensus 429 g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
T 2ocw_A 429 TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508 (585)
T ss_pred CccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccE
Confidence 222233344444433333346778899999999999997 7788899999998654321 11
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCee
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
+.|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|..
T Consensus 509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~~ 550 (585)
T 2ocw_A 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAA 550 (585)
T ss_pred EEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeeec
Confidence 589999999999999999999943334445689999988853
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=428.55 Aligned_cols=420 Identities=14% Similarity=0.179 Sum_probs=282.1
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+++.+|+.+.|+|. ..+.|...+.|++++..+.....+. .+.+. ..+|.|.+++.+|+|.|+|.|.|..+.
T Consensus 57 ~~~v~~g~~~~L~c~-~~~~~~~~~~W~~~~~~l~~~~~~~----~~~r~---~~SL~I~~v~~~D~G~Y~C~~~n~~~~ 128 (527)
T 3qs9_E 57 AVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFD----LQNRG---VVSMVILKMTETQAGEYLLFIQSEATN 128 (527)
T ss_dssp EEEECSSCCEEEEEE-CSCCSSCEEEEEETTEEECCCCBC---------C---EEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred eEEEeccccEEEEEE-EecCCceeEEEEecCCccCcccccC----CCcce---EEEEEECcCChhhCeeEEEEEEecccc
Confidence 678999999999999 6688889999999988765443331 12222 136999999999999999999998774
Q ss_pred ceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEE
Q psy17146 222 TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 301 (1011)
Q Consensus 222 ~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~ 301 (1011)
. +..+.|.|. |........+
T Consensus 129 ~--~~~~~v~v~--~~~~~~~~~p-------------------------------------------------------- 148 (527)
T 3qs9_E 129 Y--TILFTVSIR--NTLLYTLRRP-------------------------------------------------------- 148 (527)
T ss_dssp E--EEEEEEEEC-------CEEEE--------------------------------------------------------
T ss_pred E--EEEEEEEEC--CceeeccCCC--------------------------------------------------------
Confidence 4 334444443 2211111100
Q ss_pred EEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCc
Q psy17146 302 KCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVG 377 (1011)
Q Consensus 302 ~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g 377 (1011)
.....|+.+.|.|.+.|.|.| .++|++++..+.... .........+... |+|.|+|.|.|..|
T Consensus 149 -----------~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~G~Y~C~A~N~~G 215 (527)
T 3qs9_E 149 -----------YFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHEL-FGTDIRCCARNELG 215 (527)
T ss_dssp -----------EEEECSSSSCEEEEEEESSCC-EEEEEEC-------------CEEECCSEECCC-CSSCEEEEEECSSC
T ss_pred -----------cEEecCCceEEEEEEceecCC-eEEEEECCCCCccccccCCcEEEEeeeecccc-CCEEEEEEEEeCCC
Confidence 011234455688888888876 888888776653211 1111122233444 99999999999999
Q ss_pred ccee-eEEEEEEecceEeeCCCceEecCCCcEEEEeecC-CCCCCceEEEeCCCceee---------------ccCCcEE
Q psy17146 378 KSED-SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVV---------------GNSPNLT 440 (1011)
Q Consensus 378 ~~~~-s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~---------------~~~~~L~ 440 (1011)
.... .+.|.|..+|.+ .|.+..+.+|+.+.|.|.+. |.|.+.|+|+|++..+.. .....|.
T Consensus 216 ~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 293 (527)
T 3qs9_E 216 RECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293 (527)
T ss_dssp EEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEE
T ss_pred cccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEE
Confidence 8754 477888777776 66788999999999999996 999999999999864321 1224599
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.|.|. .+..+.|.|.
T Consensus 294 I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~----------------------------------------------- 322 (527)
T 3qs9_E 294 VSSVARNDTGYYTCSSSKH----PSQSALVTIV----------------------------------------------- 322 (527)
T ss_dssp ESSCCGGGCEEEEEEETTE----EEEEEEEEEC-----------------------------------------------
T ss_pred EccCCcccCeEEEEEEEeC----CCceEEEEEE-----------------------------------------------
Confidence 9999999999999999865 3444444443
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----CCCcE
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----NSPNL 593 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----~~~~L 593 (1011)
.+|.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+|+|..+... ....|
T Consensus 323 ----------------------~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L 380 (527)
T 3qs9_E 323 ----------------------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI 380 (527)
T ss_dssp ------------------------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEE
T ss_pred ----------------------ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEE
Confidence 333333322 3466788999999999999999999999998665432 35789
Q ss_pred EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.|..... | ..|.|.+.|.|.| .|+|++++......
T Consensus 381 ~I~~v~~~D~G~YtC~A~N-~~g~~~~~~~L~V~~~P~i~~~~~-----~--~~l~C~a~g~P~p-~i~W~~~~~~~~~~ 451 (527)
T 3qs9_E 381 SKFCNHKHQPGEYIFHAEN-DDAQFTKMFTLNIRRKPQVLAEAS-----A--SQASCFSDGYPLP-SWTWKKCSDKSPNC 451 (527)
T ss_dssp EEECCCTTCCSCEEEEEEE-TTEEEEEEEEEC--CCCEEEECCC-----C--E---EEEECSSCC-EEEEECCC-----C
T ss_pred EEecCCcccCEEEEEEEEe-CCCcEEEEEEEEEecCCeEEEeCC-----C--CEEEEEEEEEcCC-eEEEEECCCCcCCC
Confidence 9999999999999999999 677888899999999999875432 2 3589999999999 99999987654211
Q ss_pred CCC----CeEEecC-Cc--CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 674 SSD----DYSVLED-PL--KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 674 ~~~----~~~~~~~-~~--~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
... .+..... .. .....+.|.|.+ .+|+|.|+|.|.|.+|.++..+.|.|.++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p 511 (527)
T 3qs9_E 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGP 511 (527)
T ss_dssp CCCCCCCEEEC---------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred ccccccccceeccccccCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence 110 0000000 00 011234455554 56999999999999999999999988654
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=427.58 Aligned_cols=464 Identities=15% Similarity=0.211 Sum_probs=327.5
Q ss_pred eecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCcee-----eeceeEEEeeecCCceEEE------EEEEEEee
Q psy17146 137 IVQGDTLYTTEDREIELECISANGKPPA---EITWIDGTGTV-----MSNVRVTEEASVDGRRTTV------KSTLVLTP 202 (1011)
Q Consensus 137 i~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~~l-----~~~~~~~~~~~~~~~~~~~------~~~L~I~~ 202 (1011)
+..++.+.+.+|+.+.|.|. +.+.|.+ .+.|+|++..+ .....+. .....+|.... ..+|.|.+
T Consensus 4 i~~P~~v~v~~G~~v~L~C~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~g~~~L~I~~ 81 (585)
T 2ocw_A 4 IFGPEEVNSVEGNSVSITCY-YPPTSVNRHTRKYWCRQGARGGCITLISSEGYV-SSKYAGRANLTNFPENGTFVVNIAQ 81 (585)
T ss_pred ccCcceeEEecCCcEEEEEe-CCCCcCCCcccEEEEeCCCCCCceEEEECCCcc-cceeeceEEEEecCCCCEEEEEECC
Confidence 33455778899999999999 6666643 89999988642 1110000 00111221111 25799999
Q ss_pred ccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCcc
Q psy17146 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA 282 (1011)
Q Consensus 203 ~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~ 282 (1011)
++.+|+|.|+|.|.|..+.. +..+.|.|..+|.+. .......+.+|+.++|.|.+.+.++...+.|++++.....
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~--~~~~~l~V~~~p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~-- 156 (585)
T 2ocw_A 82 LSQDDSGRYKCGLGINSRGL--SFDVSLEVSQGPGLL-NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV-- 156 (585)
T ss_pred CCcccCEEEEEEcccCCCCc--eEEEEEEEecCcccc-CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCce--
Confidence 99999999999999988765 566778887777653 2344456788888888888887766677888887643211
Q ss_pred ccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCC-ccEEEEEECCeecCCCcCccEEEEeeccc
Q psy17146 283 SATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASATELYLTNITR 361 (1011)
Q Consensus 283 ~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~~i~W~k~g~~l~~~~~~~~L~I~~~~~ 361 (1011)
.+..... ...+. .-.+....++. ......|.|.++..
T Consensus 157 -------------------------------~~~~~~~-------~~~~~~~~r~~~~~~~~----~~~~~~L~I~~v~~ 194 (585)
T 2ocw_A 157 -------------------------------LVIDSSG-------YVNPNYTGRIRLDIQGT----GQLLFSVVINQLRL 194 (585)
T ss_pred -------------------------------EEecCCc-------ccCccccCcEEEEeccC----CCcEEEEEEccCCh
Confidence 0000000 00000 00122221110 01234899999999
Q ss_pred ccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCC---CceEEE-eCCCc-------
Q psy17146 362 HQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWI-HEDSD------- 430 (1011)
Q Consensus 362 ~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---p~v~W~-k~~~~------- 430 (1011)
+ |+|.|+|.|.|..|..+..+.|.|..+| |..+.+.+|+.+.|.|.+ +.|. +.+.|+ +++..
T Consensus 195 ~-D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~ 267 (585)
T 2ocw_A 195 S-DAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNT 267 (585)
T ss_pred h-HCeEEEEEeccCCccccceEEEEEccCC-----CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeC
Confidence 8 9999999999999998889999997643 455678899999999998 4444 678886 77621
Q ss_pred ----------ee-ec---cCC--cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEE
Q psy17146 431 ----------KV-VG---NSP--NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 494 (1011)
Q Consensus 431 ----------~~-~~---~~~--~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l 494 (1011)
+. .. ..+ .|.|.+++.+|+|.|+|.|.|.+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~------------------------------ 317 (585)
T 2ocw_A 268 LGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQE------------------------------ 317 (585)
T ss_pred CCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccc------------------------------
Confidence 11 10 123 699999999999999999997432211
Q ss_pred EeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC
Q psy17146 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 574 (1011)
Q Consensus 495 ~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p 574 (1011)
+.....+.|.|..+|.+...|....+.+|+.++|.|.+.+.|.+
T Consensus 318 ------------------------------------~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p 361 (585)
T 2ocw_A 318 ------------------------------------GSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESK 361 (585)
T ss_pred ------------------------------------cCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCc
Confidence 01113445667777888888888999999999999999999999
Q ss_pred eE----EEEe--cCC--ceee---------------c---CCC--cEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 575 EI----TWIH--EDS--DKVV---------------G---NSP--NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 575 ~v----~W~k--~~~--~~~~---------------~---~~~--~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
.+ .|+| +|. .+.. . .++ +|+|.++..+|+|.|+|.| | ..+..+..+.|.|
T Consensus 362 ~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n-~~g~~~~~~~l~V 439 (585)
T 2ocw_A 362 SIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-N-GDTLWRTTVEIKI 439 (585)
T ss_pred cEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-c-CCCccceeEEEEE
Confidence 87 7999 775 2211 0 123 3999999999999999999 7 5677888899999
Q ss_pred cC-CCeeecCCceeeecCCcEEEEEEEE----ecCCCCeEEEEECCeEecccCCCC----eEEecCCcCccceeEEEEcC
Q psy17146 627 KG-RPTIISHRTQFGIPGDTARVECSAF----SIPPPEKVTWSYRGEEIGVGSSDD----YSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 627 ~~-~P~i~~~~~~~v~~G~~v~L~C~~~----g~p~p~~v~W~~~g~~l~~~~~~~----~~~~~~~~~~~~~~~L~I~~ 697 (1011)
.. +|.+..+....+.+|+.++|.|.+. |.|.| .|.|+|+|..+....... +.... ..+..+.|.|.+
T Consensus 440 ~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~ 515 (585)
T 2ocw_A 440 IEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKY-WCKWNNTGCQALPSQDEGPSKAFVNCD---ENSRLVSLTLNL 515 (585)
T ss_pred ecCccccccCCceeEecCCcEEEEEEecCCCCCCccE-EEEEeecCceeeeccCCCCCcceEEec---CcccEEEEEECC
Confidence 76 4666666778899999999999997 66778 899999999886432211 22211 134457999999
Q ss_pred CCCCCCEEEEEEEEcCCCCeE-EEEEEEecCC
Q psy17146 698 SRHDHFGVYNCSVSNPYGSDS-VEIMLKPQKS 728 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~ 728 (1011)
+..+|+|.|+|.|.|..|... ..+.|.|...
T Consensus 516 v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 516 VTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547 (585)
T ss_pred CCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence 999999999999999999665 4488888643
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=417.33 Aligned_cols=468 Identities=16% Similarity=0.233 Sum_probs=302.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+..+|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+. ...+.++|+|.+++.+
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~ 80 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS--KSGTSASLAISGLEAE 80 (523)
T ss_pred ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe--cCCCEEEEEECCCChh
Confidence 344678899999999999999987 56789999985221100 001123566643 3346678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeee-cCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIV-QGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVM 176 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~ 176 (1011)
|+|.|+|.+.+..+.. ...+..+.|+|...+ .+|.+. .+....+.+|+.+.|.|. +.|.|+ ++++|+|++..+.
T Consensus 81 D~G~Y~C~a~n~~g~~-~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~-~~g~~p~~~~v~W~k~g~~l~ 158 (523)
T 2rcj_C 81 DESDYYCASWNSSDNS-YVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCL-ISDFYPGAVTVAWKADGSPVK 158 (523)
T ss_pred hCEEEEEEEccCCCcc-ccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEE-eccccCCceEEEEecCCCCCC
Confidence 9999999999854321 123345778886432 334433 333445668999999999 556654 3999999998886
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE--EEEeCCceEEEecCcceeecCceE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v 254 (1011)
.+..+..........+...+.|.|.+++.+|+|.|+|.|.|..+.......+.+ .+..+|.+.. ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~-~~~---------- 227 (523)
T 2rcj_C 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFP-LAP---------- 227 (523)
T ss_pred CceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEe-cCC----------
Confidence 654443222223334455578999999999999999999999876533222111 1112232221 111
Q ss_pred EEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecC-CCc
Q psy17146 255 RLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEAN-PSH 333 (1011)
Q Consensus 255 ~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~ 333 (1011)
...+.+|+.++|.|.+.+. |.+
T Consensus 228 ---------------------------------------------------------~~~~~~G~~~~l~C~~~g~~P~p 250 (523)
T 2rcj_C 228 ---------------------------------------------------------SSKSTSGGTAALGCLVKDYFPQP 250 (523)
T ss_pred ---------------------------------------------------------CcccccCCceEEEEEEeceeCCC
Confidence 1223455566666666554 444
Q ss_pred cEEEEEECCeecCCC------------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEe-eCCCce
Q psy17146 334 MKYRWYINDQPVPAA------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR-ARPYSV 400 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~-~~p~~~ 400 (1011)
+.+.|+|+|..+... .....|.|.++... | |.|+|.|.|..|.......|.|...|.+. ..|...
T Consensus 251 ~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~ 328 (523)
T 2rcj_C 251 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-T-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPK 328 (523)
T ss_pred eEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcC-C-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCch
Confidence 456666666543210 01247999999987 8 99999999999988777788777777653 445444
Q ss_pred E-ecCCCcEEEEeecCCCCC----CceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC
Q psy17146 401 Q-VDRGAGVNLLCDVDGNPA----PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475 (1011)
Q Consensus 401 ~-v~~G~~v~l~C~~~g~p~----p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~ 475 (1011)
. +.+|+.+.|.|.+.|.|+ +.|+|+|++..+....... ....+.|.|..
T Consensus 329 ~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~-----~~~~~~g~~~~--------------------- 382 (523)
T 2rcj_C 329 DTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKP-----REQQYNSTYRV--------------------- 382 (523)
T ss_pred hhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCC-----ceecCCCcEEE---------------------
Confidence 4 889999999999998754 4999999986542211000 00112222221
Q ss_pred CeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEE
Q psy17146 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQ 555 (1011)
Q Consensus 476 p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~ 555 (1011)
T Consensus 383 -------------------------------------------------------------------------------- 382 (523)
T 2rcj_C 383 -------------------------------------------------------------------------------- 382 (523)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE----EcCCCe
Q psy17146 556 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY----LKGRPT 631 (1011)
Q Consensus 556 v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~----V~~~P~ 631 (1011)
.+.|.|.++..+|+|.|+|+|.|. .+.......|. +..+|.
T Consensus 383 ----------------------------------~s~L~i~~~~~~d~G~Y~C~a~n~-~~~~~~~~~~~~~~~~~~~P~ 427 (523)
T 2rcj_C 383 ----------------------------------VSVLTVLHQNWLDGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQ 427 (523)
T ss_pred ----------------------------------EEEEEECHHHhcCCCeEEEEEeCC-CCCCceeEEEEcccCCCCCCE
Confidence 134778888999999999999984 33333344444 467787
Q ss_pred eec-CCceeeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEE
Q psy17146 632 IIS-HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 632 i~~-~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y 706 (1011)
+.. +.......|..++|.|.+.|.|+| ..|+|+|||+++............ ++ ..+.|.|......|.|.|
T Consensus 428 v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~----~gt~~~~~~l~v~~~~~~~~g~Y 503 (523)
T 2rcj_C 428 VYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS----DGSFFLYSKLTVDKSRWQQGNVF 503 (523)
T ss_pred EEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCC----CCCEEEEEEEEEChHHccCCCeE
Confidence 663 222222334459999999997654 489999999998632211111111 22 235677777777889999
Q ss_pred EEEEEcCCCC
Q psy17146 707 NCSVSNPYGS 716 (1011)
Q Consensus 707 ~C~a~N~~G~ 716 (1011)
+|.|.|....
T Consensus 504 ~C~a~n~~l~ 513 (523)
T 2rcj_C 504 SCSVMHEALH 513 (523)
T ss_pred EEEEEcCCcC
Confidence 9999998753
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-44 Score=413.86 Aligned_cols=427 Identities=18% Similarity=0.285 Sum_probs=288.5
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCee-----EEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVL-----QWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v-----~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
++.++|.++.+.+|++++|.|.+.++.+.+ .|+|++..+.. . ...+|.|.+++. |+|
T Consensus 1 ~i~~~P~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~~~-------~----------~~~~l~i~~v~~-d~g 62 (450)
T 1z7z_I 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPG-------N----------NRKVYELSNVQE-DSQ 62 (450)
T ss_dssp CCEEESSEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCSST-------T----------TEEEEEEEEECS-CBC
T ss_pred CcccCCCceEEecCCcEEEEEEccCCCcccccccceeeecceEecC-------C----------CceEEEEEeccc-CCe
Confidence 367889999999999999999999988888 89998753310 1 223799999987 999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCceeeecee
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA---EITWIDGTGTVMSNVR 180 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~~l~~~~~ 180 (1011)
|+|.+.+. .+..+..+.|+|..+|... ...+....+.+|+.+.|.|. +.+.|++ .++|+|++..+.....
T Consensus 63 -Y~C~a~~~----~~~~~~~~~l~V~~~P~~~-~~~~~~~~v~~G~~v~L~C~-~~g~~~~~~~~v~W~k~g~~l~~~~~ 135 (450)
T 1z7z_I 63 -PMCYSNCP----DGQSTAKTFLTVYWTPERV-ELAPLPSWQPVGKNLTLRCQ-VEGGAPRANLTVVLLRGEKELKREPA 135 (450)
T ss_dssp -CEEEEEET----TEEEEEECEEEEEBCCSEE-EECCCCSEECTTSEEEEEEE-EECCBCGGGEEEEEEETTEEEEEEEC
T ss_pred -eEEEEeCC----CCcceeEEEEEEEeCCCcc-eecCCCceEeeCCeEEEEEE-ecCCCCCcCcEEEEeeCCEEeecccc
Confidence 99999753 2345677889998865432 23334567889999999999 6677776 9999999887754321
Q ss_pred EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee------EEEEEEEEEeCCceEEEecCcceeecCceE
Q psy17146 181 VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK------VARLKLLVKYAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~------s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v 254 (1011)
. ... ..+.|.|.++..+|+|.|+|.|.|..|.... +....+.+...|...........+.+|+.+
T Consensus 136 ~-----~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v 206 (450)
T 1z7z_I 136 V-----GEP----AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206 (450)
T ss_dssp C-----TTT----EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEE
T ss_pred c-----ccc----cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcE
Confidence 1 111 1358999999999999999999998774321 122333343221111111112344555555
Q ss_pred EEEEEcccCCC--ccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCC
Q psy17146 255 RLYCKAEANPS--HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPS 332 (1011)
Q Consensus 255 ~L~C~~~~~~~--~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~ 332 (1011)
+|.|.+.+.++ .+.+.|++++..+..
T Consensus 207 ~l~C~~~g~~P~~~~~~~W~~~~~~~~~---------------------------------------------------- 234 (450)
T 1z7z_I 207 TVVCSLDGLFPVSEAQVHLALGDQRLNP---------------------------------------------------- 234 (450)
T ss_dssp EEEEEEESCTTGGGCEEEEEETTEECCC----------------------------------------------------
T ss_pred EEEEEeeCCCCCCceEEEEeCCCEeCCc----------------------------------------------------
Confidence 55555555522 344555544433211
Q ss_pred ccEEEEEECCeecCCCcCccEEEEeecccccCCc--EEEEEEEcCCccceeeEEEEEEe--cceEeeCCCceEecCCCcE
Q psy17146 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDS--IVKCEVHNDVGKSEDSETLDVTY--GPRFRARPYSVQVDRGAGV 408 (1011)
Q Consensus 333 ~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G--~Y~C~a~n~~g~~~~s~~l~V~~--~P~~~~~p~~~~v~~G~~v 408 (1011)
.+.|..++ ....+.+ ++..+ |+| .|+|.|.|..|..+..+.|.|.. +|.+... +..+.+|+.+
T Consensus 235 --~~~~~~~~-------~~~~~~~-~v~~~-d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v 301 (450)
T 1z7z_I 235 --TVTYGNDS-------FSAKASV-SVTAE-DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEV 301 (450)
T ss_dssp --EEEEETTE-------EEEEEEE-ECCGG-GCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEE
T ss_pred --eEEecCCc-------eeEEEEE-EeEhh-hCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcE
Confidence 11111110 0011122 66776 999 99999999999988899999988 5555543 4589999999
Q ss_pred EEEeecCCCCCCceEEEeCCCce-eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCccccc
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDK-VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGI 487 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~-~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~ 487 (1011)
+|.|.+. |.|.++| ++... .......|.|.++..+|+|.|+|.|.|..++...
T Consensus 302 ~l~C~~~--p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~---------------------- 355 (450)
T 1z7z_I 302 TVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI---------------------- 355 (450)
T ss_dssp EEEEEC--------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEE----------------------
T ss_pred EEEEecC--CCCEeEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCccc----------------------
Confidence 9999998 8999999 65544 2345568999999999999999999963222111
Q ss_pred CCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCC--ceEEEcCCCcEEEE
Q psy17146 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLL 565 (1011)
Q Consensus 488 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p--~~~~v~~G~~~~l~ 565 (1011)
....++.|.|..+|.+...+ .+..+.+|+.++|.
T Consensus 356 --------------------------------------------~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~ 391 (450)
T 1z7z_I 356 --------------------------------------------HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391 (450)
T ss_dssp --------------------------------------------EEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCC
T ss_pred --------------------------------------------ccceeEEEEEecCCceeeccCCCceeEcCCCeEEEE
Confidence 01123345666777776654 67889999999999
Q ss_pred EEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 566 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 566 C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
|.+.|.|.|.+.|+|++.... ..+..| ++..+|+|.|+|.|.| ..|..+..+.|.|..+
T Consensus 392 C~~~g~P~p~i~W~~~g~~~~-~~g~~~---~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~ 450 (450)
T 1z7z_I 392 CQAWGNPLPELKCLKDGTFPL-PIGESV---TVTRDLEGTYLCRARS-TQGEVTREVTVNVLSP 450 (450)
T ss_dssp CCCEEESCCEEEEEETTTEEC-CTTSCE---ECCGGGCEEEEEEEEE-TTEEEEEEEEEEEECC
T ss_pred EecccCCCCcEEEEECCcccC-CCCCeE---eEehhhCeEEEEEEEe-CCCceeEEEEEEEEcC
Confidence 999999999999999997332 223333 6889999999999999 6889999999998754
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=420.04 Aligned_cols=437 Identities=14% Similarity=0.164 Sum_probs=276.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
...++..++|.+|++++|.|.+.++ ...+.|++++..+.....+.... .+..+|.|.+|+.+|+|.|+|.
T Consensus 51 ~~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~---------r~~~SL~I~~v~~~D~G~Y~C~ 121 (527)
T 3qs9_E 51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN---------RGVVSMVILKMTETQAGEYLLF 121 (527)
T ss_dssp -----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------------CEEEEEESSCCSSSCSEEEEE
T ss_pred ceeeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCc---------ceEEEEEECcCChhhCeeEEEE
Confidence 3445558999999999999999875 46899999998764333232222 2345799999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
+.+.. + ...+.++|.+.+...... ........|+.+.|.|. +.|+|.|.|+|++++..+..... ...
T Consensus 122 ~~n~~----~--~~~~~~~v~v~~~~~~~~-~~p~~~~~~~~~~L~C~-a~G~P~P~i~W~~~~~~~~~~~~-----~~~ 188 (527)
T 3qs9_E 122 IQSEA----T--NYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKE-----ESP 188 (527)
T ss_dssp EEC------C--EEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEE-EEESSCCEEEEEEC-----------------
T ss_pred EEecc----c--cEEEEEEEEECCceeecc-CCCcEEecCCceEEEEE-EceecCCeEEEEECCCCCccccc-----cCC
Confidence 98753 2 223444554443322211 22333456777899999 78999999999998765432110 000
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccE
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~ 268 (1011)
. .-......+..+|+|.|+|.|.|..|... +..+.|.|...|.. .+....+.+|+.+.|.|.+....+.+.
T Consensus 189 ~-----~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~ 259 (527)
T 3qs9_E 189 A-----VVKKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFG 259 (527)
T ss_dssp ------CEEECCSEECCCCSSCEEEEEECSSCEEE-EECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCC
T ss_pred c-----EEEEeeeeccccCCEEEEEEEEeCCCccc-ceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeE
Confidence 0 01222334568999999999999988763 23466777666654 233445667777777777763333466
Q ss_pred EEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC
Q psy17146 269 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 348 (1011)
Q Consensus 269 i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~ 348 (1011)
++|++++..+..... ....-+..+...
T Consensus 260 i~W~k~g~~l~~~~~--------------------------------------------------~~~~~~~~~~~~--- 286 (527)
T 3qs9_E 260 LTWELENKALEEGNY--------------------------------------------------FEMSTYSTNRTM--- 286 (527)
T ss_dssp EEEECSSSCCCGGGE--------------------------------------------------EEEEEEETTTEE---
T ss_pred EEEEECCEECCCCce--------------------------------------------------eeeeeeccCcce---
Confidence 777777665432210 000001111000
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC--CceEecCCCcEEEEeecCCCCCCceEEEe
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIH 426 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k 426 (1011)
.....|.|.++..+ |+|.|+|.|.|. .+.++.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.|+|+|
T Consensus 287 ~~~~~L~I~~v~~~-DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k 362 (527)
T 3qs9_E 287 IRILFAFVSSVARN-DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362 (527)
T ss_dssp EEEEEEEESSCCGG-GCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred eeEEEEEEccCCcc-cCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE
Confidence 12356999999998 999999999987 6778889999888876654 35678899999999999999999999999
Q ss_pred CCCceeec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeC
Q psy17146 427 EDSDKVVG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 501 (1011)
Q Consensus 427 ~~~~~~~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~ 501 (1011)
++..+... ....|.|.+++.+|+|.|+|.|.|..
T Consensus 363 ~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~----------------------------------------- 401 (527)
T 3qs9_E 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD----------------------------------------- 401 (527)
T ss_dssp TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETT-----------------------------------------
T ss_pred CCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCC-----------------------------------------
Confidence 98655322 35679999999999999999999743
Q ss_pred CCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec
Q psy17146 502 PPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 581 (1011)
Q Consensus 502 ~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~ 581 (1011)
|....++.|.|..+|.|...+. ...|.|.+.|.|.|.+.|+++
T Consensus 402 -----------------------------g~~~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~ 444 (527)
T 3qs9_E 402 -----------------------------AQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKC 444 (527)
T ss_dssp -----------------------------EEEEEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECC
T ss_pred -----------------------------CcEEEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEEC
Confidence 3333344455556666655442 235799999999999999987
Q ss_pred CCceee--------------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 582 DSDKVV--------------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 582 ~~~~~~--------------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
+..... .....++|.....+|+|.|+|.|.| ..|..+..+.|.|..+-.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N-~~G~~~~~~~L~V~~p~~~~ 515 (527)
T 3qs9_E 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN-SLGTSCETILLNSPGPFPFI 515 (527)
T ss_dssp C-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEEC-SSCEEEEEEEC---------
T ss_pred CCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEe-CCCCceeEEEEecCCCceec
Confidence 643210 0011233333345799999999999 68899999999887764443
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=404.32 Aligned_cols=402 Identities=14% Similarity=0.192 Sum_probs=273.1
Q ss_pred CCeeeecCCCcEEEEEEccCCCCCcEE-----EEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEE
Q psy17146 140 GDTLYTTEDREIELECISANGKPPAEI-----TWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQ 214 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P~~~i-----~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 214 (1011)
++.+.+.+|+.+.|.|. +.+ |.+.+ .|+|++..+. +.+ ...|.|.+++. |+| |+|.
T Consensus 6 P~~~~v~~G~~v~L~C~-~~g-p~p~~~~~~~~w~k~~~~~~-----------~~~----~~~l~i~~v~~-d~g-Y~C~ 66 (450)
T 1z7z_I 6 PSKVILPRGGSVLVTCS-TSC-DQPMLLGIETPLPKKELLLP-----------GNN----RKVYELSNVQE-DSQ-PMCY 66 (450)
T ss_dssp SSEEEEETTEEEEEEEE-CCS-SCCCEEEECSSSCEEECCSS-----------TTT----EEEEEEEEECS-CBC-CEEE
T ss_pred CCceEEecCCcEEEEEE-ccC-CCcccccccceeeecceEec-----------CCC----ceEEEEEeccc-CCe-eEEE
Confidence 45677889999999999 667 88888 8998755331 111 13799999987 999 9999
Q ss_pred EEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeec
Q psy17146 215 AQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~ 294 (1011)
|.+..+. .+..+.|.|..+|......+.+..+.+|+.++|.|.+.+.+++.
T Consensus 67 a~~~~~~--~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~--------------------------- 117 (450)
T 1z7z_I 67 SNCPDGQ--STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA--------------------------- 117 (450)
T ss_dssp EEETTEE--EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGG---------------------------
T ss_pred EeCCCCc--ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCc---------------------------
Confidence 9765443 35566777777776543333334445555555555555444322
Q ss_pred ccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-----cCccEEEEeecccccCCcEEE
Q psy17146 295 HQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIVK 369 (1011)
Q Consensus 295 ~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-----~~~~~L~I~~~~~~~d~G~Y~ 369 (1011)
.+.+.|+|+|..+... .....|.|.++... |+|.|+
T Consensus 118 --------------------------------------~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~ 158 (450)
T 1z7z_I 118 --------------------------------------NLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH-HGANFS 158 (450)
T ss_dssp --------------------------------------GEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSC-SSCEEE
T ss_pred --------------------------------------CcEEEEeeCCEEeecccccccccceEEEEEeeccc-cCceEE
Confidence 0145555555544321 23458999888876 999999
Q ss_pred EEEEcCCccce--------eeEEEEEEec----ceEeeCCCceEecCCCcEEEEeecCCC-C--CCceEEEeCCCcee--
Q psy17146 370 CEVHNDVGKSE--------DSETLDVTYG----PRFRARPYSVQVDRGAGVNLLCDVDGN-P--APEITWIHEDSDKV-- 432 (1011)
Q Consensus 370 C~a~n~~g~~~--------~s~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~~~g~-p--~p~v~W~k~~~~~~-- 432 (1011)
|.|.|..|... ....|.|... |.+.. ...+.+|+.+.|.|.+.|. | .+.+.|++++....
T Consensus 159 C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~ 235 (450)
T 1z7z_I 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235 (450)
T ss_dssp EEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCE
T ss_pred EEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCce
Confidence 99999877543 3344555432 22221 1678999999999999998 7 78999999985432
Q ss_pred -eccCCcEEEE---eeccCCCe--EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCe
Q psy17146 433 -VGNSPNLTLL---MTSDDLAG--RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506 (1011)
Q Consensus 433 -~~~~~~L~I~---~v~~~d~G--~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 506 (1011)
......+.+. +++.+|+| .|+|.|.|..+ .....+.|
T Consensus 236 ~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g-~~~~~~~l------------------------------------ 278 (450)
T 1z7z_I 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTV------------------------------------ 278 (450)
T ss_dssp EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTE-EEEEEEEE------------------------------------
T ss_pred EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCc-cEEEEEEE------------------------------------
Confidence 1112233332 67899999 99999997532 22223333
Q ss_pred eEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEe--cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc
Q psy17146 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY--GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584 (1011)
Q Consensus 507 v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~--~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~ 584 (1011)
.|.. +|.+.. .+..+.+|+.++|.|.+. |.|.++| +|..
T Consensus 279 ---------------------------------~V~~~~~p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~ 319 (450)
T 1z7z_I 279 ---------------------------------TIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVP 319 (450)
T ss_dssp ---------------------------------EEECCCCCEEEE--SCSEEETTCEEEEEEEC----------------
T ss_pred ---------------------------------EEecCCCCeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEE
Confidence 3332 233322 234788999999999998 8899999 6655
Q ss_pred e-eecCCCcEEEeecCCCCCEEEEEEEEecCCCc---eeeEEEEEEcCCCeeecC---CceeeecCCcEEEEEEEEecCC
Q psy17146 585 K-VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE---VGAEATVYLKGRPTIISH---RTQFGIPGDTARVECSAFSIPP 657 (1011)
Q Consensus 585 ~-~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~---~s~~~~l~V~~~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~ 657 (1011)
+ .......|.|.++..+|+|.|+|.|.|...+. .+..+.|.|..+|.+... ....+.+|+.++|.|.+.|.|.
T Consensus 320 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~ 399 (450)
T 1z7z_I 320 AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 399 (450)
T ss_dssp ----CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESC
T ss_pred cCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCC
Confidence 5 33455789999999999999999999743433 347889999999998743 4668999999999999999999
Q ss_pred CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 658 p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
| .|+|+|+|..+.. . + ..+ ++..+|+|.|+|.|.|.+|.++..+.|.|..
T Consensus 400 p-~i~W~~~g~~~~~--~------------g--~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 400 P-ELKCLKDGTFPLP--I------------G--ESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp C-EEEEEETTTEECC--T------------T--SCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C-cEEEEECCcccCC--C------------C--CeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 9 9999999985432 1 1 122 5778999999999999999999999999853
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=374.12 Aligned_cols=343 Identities=24% Similarity=0.364 Sum_probs=279.1
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-------cCccEEEEeec-----ccccCCcEEEEEEEcCCc
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNI-----TRHQHDSIVKCEVHNDVG 377 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-------~~~~~L~I~~~-----~~~~d~G~Y~C~a~n~~g 377 (1011)
+.+..+.+|+.++|.|.+.+..+...+.|+|+|..+... .....|.|.++ +.+ |+|.|+|.|.|..+
T Consensus 28 P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~-D~G~Y~C~~~~~~~ 106 (403)
T 3laf_A 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP-DEGLYQCEASLGDS 106 (403)
T ss_dssp CCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCS-SCEEEEEEEECGGG
T ss_pred CCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCC-cceEEEEEEEeCCC
Confidence 456789999999999999885433489999999998643 23456888777 555 99999999996543
Q ss_pred cc--eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce---------eeccCCcEEEEeecc
Q psy17146 378 KS--EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK---------VVGNSPNLTLLMTSD 446 (1011)
Q Consensus 378 ~~--~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~---------~~~~~~~L~I~~v~~ 446 (1011)
.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++... .....+.|.|.+++.
T Consensus 107 ~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 186 (403)
T 3laf_A 107 GSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQP 186 (403)
T ss_dssp CEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCG
T ss_pred ccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEccccc
Confidence 32 5677888888889988888999999999999999999999999999998654 234467899999999
Q ss_pred CCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEE
Q psy17146 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~ 526 (1011)
+|+|.|+|.|.|..+...+..+.+.+...|.+.
T Consensus 187 ~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~----------------------------------------------- 219 (403)
T 3laf_A 187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLH----------------------------------------------- 219 (403)
T ss_dssp GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-----------------------------------------------
T ss_pred ccCEEEEEEEEcCCCceeccceeEEEecCCCcc-----------------------------------------------
Confidence 999999999998654444444444443322210
Q ss_pred EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecC
Q psy17146 527 HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTS 599 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~ 599 (1011)
.++.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.|.|.++.
T Consensus 220 ----------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 283 (403)
T 3laf_A 220 ----------------RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT 283 (403)
T ss_dssp ----------------EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCC
T ss_pred ----------------cCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCC
Confidence 11234455667888999999999999999999999999885432 2345789999999
Q ss_pred CCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCe
Q psy17146 600 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
.+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+. ...++
T Consensus 284 ~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~~~--~~~~~ 359 (403)
T 3laf_A 284 DDDSGTYTCVVTY-KNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVI--PSDYF 359 (403)
T ss_dssp GGGCEEEEEEEEE-TTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCC-EEEEEETTEECC--CSSSE
T ss_pred HHHCEEEEEEEEc-CCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCC-EEEEEECCEECC--CCCcE
Confidence 9999999999999 57788999999999999887 4566778999999999999999999 999999999986 34455
Q ss_pred EEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 679 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 360 ~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 360 QIVG-------GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp EEET-------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred EEec-------CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 5543 26899999999999999999999999999999999864
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=367.64 Aligned_cols=335 Identities=23% Similarity=0.352 Sum_probs=263.2
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeec-ccccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNI-TRHQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~-~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
.+|+.+.|.|.+.|.|.| .++|+|||..+.... ....|.|.+. ..+ |+|.|+|.|.|..|.. +..+.|.|
T Consensus 21 ~eg~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~-D~G~Y~C~A~N~~G~~~s~~~~l~v 98 (384)
T 3kld_A 21 SEEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQ-DAGTYQCIATNSFGTIVSREAKLQF 98 (384)
T ss_dssp CSCSEEEECCEEEEESCC-EEEEEETTEECCC----CEEEETTEEEEESCCHHH-HCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCeEEEEeEecCCCCC-EEEEEECCEECcCCCCccEEEECCEEEEcCCCCcc-cCEEEEEEEEcCcccEEecceEEEE
Confidence 589999999999999987 999999999986531 2456778776 555 9999999999999975 46778888
Q ss_pred EecceEeeC-CCceEecCCCcEEEEeecC-CCCCCceEEEeCCCce-------eeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 388 TYGPRFRAR-PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 388 ~~~P~~~~~-p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
...+.+... +....+.+|+.+.|.|... +.|.+.+.|++++... .....+.|.|.+++.+|+|.|+|.|.|
T Consensus 99 ~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 178 (384)
T 3kld_A 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 178 (384)
T ss_dssp EEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred ecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEec
Confidence 776665543 3557899999999999874 5677899999987432 233467899999999999999999998
Q ss_pred cCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 459 MGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 459 ~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
..+.... ....+.+. ..
T Consensus 179 ~~~~~~~~~~~~~~~v~------------------------~~------------------------------------- 197 (384)
T 3kld_A 179 TVTNHKVLGPPTPLILR------------------------ND------------------------------------- 197 (384)
T ss_dssp TTTTEEEECCCEEEEEE------------------------EE-------------------------------------
T ss_pred ccccceeeCCceEEEEc------------------------cC-------------------------------------
Confidence 5432110 00001000 00
Q ss_pred EEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEE
Q psy17146 537 ETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 537 ~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.+.....|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|+|++... ....++.|.|.+++.+|+|.|+|.
T Consensus 198 -~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 276 (384)
T 3kld_A 198 -GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276 (384)
T ss_dssp -EECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred -CcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEE
Confidence 00001223332 3466788999999999999999999999999965422 233467899999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
|.| ..|.....+.|.|..+|.+. .+.+..+..|+.+.|.|.+.|.|.| .|+|+|||.++. ...++.+..
T Consensus 277 a~N-~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~i~W~k~g~~l~--~~~~~~~~~------ 346 (384)
T 3kld_A 277 AEN-SRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPLL--TRDRIQIEQ------ 346 (384)
T ss_dssp EEE-TTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC-EEEEEETTEECC--CBTTEEEET------
T ss_pred EEc-CCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCC-eEEEEECCEECC--CCccEEEeC------
Confidence 999 67788888999999999887 4567789999999999999999999 999999999987 345565533
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
++|.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 347 --~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 347 --GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp --TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred --CEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 589999999999999999999999999999999884
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=374.07 Aligned_cols=378 Identities=12% Similarity=0.144 Sum_probs=227.1
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEE---------EEEEc-CCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFAT---------LTVLV-PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~---------l~V~~-~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
+..|.|.|+|...+...+.......... |+... ++.+..+..+..+++.+|+.+.|.|. +.+.|.+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~-v~g~P~p~i~ 81 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVL-VDAPGNISCL 81 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEE-CSCCSSCEEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEE-EEcCCCCeEE
Confidence 3468899999987653332111111111 21122 12233344455889999999999999 7789999999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcce
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~ 247 (1011)
|++++..+.....+ ..+.+. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.... +.
T Consensus 82 W~~~~~~l~~~~~~----~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~~~--p~- 149 (423)
T 3qs7_E 82 WVFKHSSLNCQPHF----DLQNRG---VVSMVILKMTETQAGEYLLFIQSEATNY--TILFTVSIRNTLLYTLRR--PY- 149 (423)
T ss_dssp EEETTEEECCCCBC---------C---EEEEEESSCCSSSCSEEEEEEEC--CEE--EEEEEEEEC-----CEEE--EE-
T ss_pred EEECCCccCcccee----ccccce---EEEEEEeecCcccCEEEEEEEEcCCCcE--EEEEEEEEecCccccccC--Cc-
Confidence 99998776442221 111111 2369999999999999999999998865 455666666544331111 01
Q ss_pred eecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEe
Q psy17146 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327 (1011)
Q Consensus 248 v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~ 327 (1011)
.+..|+.+.|.|.+
T Consensus 150 ------------------------------------------------------------------~~~~~~~~~L~C~a 163 (423)
T 3qs7_E 150 ------------------------------------------------------------------FRKMENQDALVCIS 163 (423)
T ss_dssp ------------------------------------------------------------------EEECSSSSCEEEEE
T ss_pred ------------------------------------------------------------------EeccCCceEEEEEE
Confidence 12234555677777
Q ss_pred ecCCCccEEEEEECCeecCCCcC---ccEEEEeecccccCCcEEEEEEEcCCccce-eeEEEEEEecceEeeCCCceEec
Q psy17146 328 EANPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVD 403 (1011)
Q Consensus 328 ~~~p~~~~i~W~k~g~~l~~~~~---~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~P~~~~~p~~~~v~ 403 (1011)
.|.|.| .++|+|++..+..... ...+....+....|+|.|+|.|.|..|... ..+.|.|..+|.+ .+.+..+.
T Consensus 164 ~G~P~P-~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~ 240 (423)
T 3qs7_E 164 ESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLK 240 (423)
T ss_dssp EESSCC-EEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEE
T ss_pred eeecCC-eEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEe
Confidence 777766 7777777765432100 011111111123499999999999999764 3466777666654 45578899
Q ss_pred CCCcEEEEeecCC-CCCCceEEEeCCCceee---------------ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 404 RGAGVNLLCDVDG-NPAPEITWIHEDSDKVV---------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 404 ~G~~v~l~C~~~g-~p~p~v~W~k~~~~~~~---------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
+|+.+.|.|.+.| .|.+.++|+|++..+.. .....|.|.+++.+|+|.|+|.|.|. .+..
T Consensus 241 ~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~ 316 (423)
T 3qs7_E 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQS 316 (423)
T ss_dssp TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC----CCce
Confidence 9999999999998 77799999999865321 11236999999999999999999865 3344
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.|. |..+|.+
T Consensus 317 ~~L~---------------------------------------------------------------------V~~~p~i 327 (423)
T 3qs7_E 317 ALVT---------------------------------------------------------------------IVEKGFI 327 (423)
T ss_dssp EEEE---------------------------------------------------------------------EESSCEE
T ss_pred EEEE---------------------------------------------------------------------EEeCCcc
Confidence 4444 4444444
Q ss_pred ecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC-----CCcEEEeecCCCCCEEEEEEEEecCCCceee
Q psy17146 548 RARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----SPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620 (1011)
Q Consensus 548 ~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~-----~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 620 (1011)
...+ ..+.+.+|+++.|.|.+.|.|.|.++|+|+|..+.... ...+.+.....+|+|.|+|.|.| ..|..+.
T Consensus 328 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N-~~G~~~~ 406 (423)
T 3qs7_E 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN-DDAQFTK 406 (423)
T ss_dssp EEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEE-TTEEEEE
T ss_pred eEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEc-CCceEEE
Confidence 3333 35668899999999999999999999999997765443 23333477788999999999999 7889999
Q ss_pred EEEEEEcCCCe
Q psy17146 621 EATVYLKGRPT 631 (1011)
Q Consensus 621 ~~~l~V~~~P~ 631 (1011)
++.|.|..+|.
T Consensus 407 s~~L~v~~~p~ 417 (423)
T 3qs7_E 407 MFTLNIRSGTK 417 (423)
T ss_dssp EEEEC------
T ss_pred EEEEEEecCCc
Confidence 99999987764
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=368.27 Aligned_cols=323 Identities=12% Similarity=0.101 Sum_probs=237.3
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 384 (1011)
+..+.+|+++.|.|.+.+.|.+ .+.|++++..+... .....|.|.+++.+ |+|.|+|.|.|..|..+..+.
T Consensus 57 ~v~V~~G~~v~L~C~v~g~P~p-~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~a~N~~g~~~~~~~ 134 (423)
T 3qs7_E 57 AVEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTILFT 134 (423)
T ss_dssp EEEECSSCCEEEEEECSCCSSC-EEEEEETTEEECCCCBC-----CEEEEEESSCCSS-SCSEEEEEEEC--CEEEEEEE
T ss_pred cEEEecCCcEEEEEEEEcCCCC-eEEEEECCCccCccceeccccceEEEEEEeecCcc-cCEEEEEEEEcCCCcEEEEEE
Confidence 4678999999999999997775 89999999876542 11246999999997 999999999999998888888
Q ss_pred EEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeec---cCCc-EEE-EeeccCCCeEEEEEEEEc
Q psy17146 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---NSPN-LTL-LMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 385 l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~---~~~~-L~I-~~v~~~d~G~Y~C~a~n~ 459 (1011)
|.|..+|.+.. .....+..|+.+.|.|.+.|+|.|.|+|+|++...... .... +.. ..+..+|+|.|+|.|.|.
T Consensus 135 l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~ 213 (423)
T 3qs7_E 135 VSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213 (423)
T ss_dssp EEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECS
T ss_pred EEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcC
Confidence 99987665531 12234566888999999999999999999987533110 0000 111 112678999999999986
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.+......+.|.|
T Consensus 214 ~G~~~~~~~~l~V------------------------------------------------------------------- 226 (423)
T 3qs7_E 214 LGRECTRLFTIDL------------------------------------------------------------------- 226 (423)
T ss_dssp SCEEEEECEEEES-------------------------------------------------------------------
T ss_pred CCCcceeeEEEEE-------------------------------------------------------------------
Confidence 4433333333333
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec---------------CCCcEEEeecCCCCC
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG---------------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~---------------~~~~L~I~~v~~~d~ 603 (1011)
..+|.+ .+.+..+.+|+.+.|.|.+.| .|.|.++|+|++..+... ..++|.|.++..+|+
T Consensus 227 --~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 302 (423)
T 3qs7_E 227 --NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302 (423)
T ss_dssp --SSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTC
T ss_pred --ecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHC
Confidence 233332 344677899999999999999 677999999998754221 124799999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec-C--CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC---CC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS-H--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS---DD 677 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~--~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~---~~ 677 (1011)
|.|+|.|.|. .+..+.|.|..+|.+.. + ....+.+|+++.|.|.+.|.|.| .|+|+|||..+..... .+
T Consensus 303 G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~ 377 (423)
T 3qs7_E 303 GYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQKGLDNG 377 (423)
T ss_dssp EEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC-EEEEEETTEEEECBCCBCSSS
T ss_pred EEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC-eEEEEECCEECCCccccccCC
Confidence 9999999984 78889999999998763 2 35668899999999999999999 9999999999974321 11
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+ .+.+.....+|+|.|+|.|+|..|+.+.++.|.|.
T Consensus 378 ~-------------~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~ 413 (423)
T 3qs7_E 378 Y-------------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413 (423)
T ss_dssp S-------------EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred c-------------EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence 1 22235566789999999999999999999999885
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=359.37 Aligned_cols=334 Identities=23% Similarity=0.349 Sum_probs=269.7
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeeccc-ccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITR-HQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~~~-~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
.+|+.++|.|.+.+.|.+ .+.|+|+|..+.... ....|.|.++.. + |+|.|+|.|.|..|.. +..+.|.|
T Consensus 20 ~~g~~v~l~C~~~g~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~-D~G~Y~C~a~n~~g~~~s~~~~l~v 97 (382)
T 1cs6_A 20 SAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAK-DAGSYQCVATNARGTVVSREASLRF 97 (382)
T ss_dssp CSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETTEEEEESCCHHH-HCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCcEEEEEEecCCCCC-EEEEEECCEECCcCCCccEEeeCCeEEEecccccc-cCEEEEEEEEcCCcEEEecceEEEe
Confidence 689999999999999876 999999999987531 246799999886 6 9999999999998875 45788888
Q ss_pred EecceEeeC-CCceEecCCCcEEEEeec-CCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEE
Q psy17146 388 TYGPRFRAR-PYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P~~~~~-p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
...|.+... +....+.+|+.+.|.|.+ .+.|.+.+.|++++.... ....+.|.|.+++.+|+|.|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 177 (382)
T 1cs6_A 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA 177 (382)
T ss_dssp EEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred eccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEE
Confidence 887766543 567789999999999996 567889999999975431 233478999999999999999999
Q ss_pred EEcCCcce----eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCC
Q psy17146 457 SVMGFPEV----GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532 (1011)
Q Consensus 457 ~n~~~~~~----s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~ 532 (1011)
.|..+... +..+.+.+...
T Consensus 178 ~n~~g~~~~~~~s~~~~l~v~~~--------------------------------------------------------- 200 (382)
T 1cs6_A 178 TSHIDFITKSVFSKFSQLSLAAE--------------------------------------------------------- 200 (382)
T ss_dssp EEEETTEEEEEECCCEEEEEESC---------------------------------------------------------
T ss_pred EEccccccceeEccceeeccchh---------------------------------------------------------
Confidence 98532111 11122221100
Q ss_pred CcccEEEEEEecceeec-CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee---ecCCCcEEEeecCCCCCEEEEE
Q psy17146 533 SEDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 533 ~~~~~~l~V~~~P~~~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
+.+..+|.+.. .+....+.+|+.++|.|.+.+.|.+.+.|+|++..+. ......|.|.++..+|+|.|+|
T Consensus 201 ------~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 274 (382)
T 1cs6_A 201 ------DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274 (382)
T ss_dssp ------CCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEE
T ss_pred ------hcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEE
Confidence 00112454443 4567889999999999999999999999999986643 3456889999999999999999
Q ss_pred EEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 609 KASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
.|.| ..+..+..+.|.|..+|.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+..
T Consensus 275 ~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~--~~~~~~~~----- 345 (382)
T 1cs6_A 275 EAEN-IKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLAS--QNRIEVSG----- 345 (382)
T ss_dssp EEEE-TTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCC--CSSEEEET-----
T ss_pred EEEc-CCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCC-EEEEEECCEECCC--CceEEEEC-----
Confidence 9999 56778889999999999887 4466779999999999999999999 8999999999873 45555533
Q ss_pred cceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 688 ~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.|.|.++..+|+|.|+|.|.|.+|..++++.|.|.
T Consensus 346 ---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 346 ---GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ---TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 589999999999999999999999999999999874
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=364.53 Aligned_cols=344 Identities=22% Similarity=0.371 Sum_probs=270.6
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC--------cCccEEEEe----ecccccCCcEEEEEEEcCCcc
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLT----NITRHQHDSIVKCEVHNDVGK 378 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~--------~~~~~L~I~----~~~~~~d~G~Y~C~a~n~~g~ 378 (1011)
.+..+.+|+.++|.|.+.+.|.+ .+.|+|+|..+... .....|.|. ++..+ |+|.|+|.|.|..|.
T Consensus 25 ~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~-D~G~Y~C~a~n~~g~ 102 (404)
T 3p3y_A 25 KDHIVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE-YEGEYQCFARNKFGT 102 (404)
T ss_dssp TTCEECSSSCCCCCEEECCSSCC-EEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTS-SCEEEEEEEECSSCE
T ss_pred ccEEEcCCCCEEEEEEecCCCCC-eEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCcc-CCEEEEEEEEcCCCe
Confidence 45678999999999999998876 99999999987532 234556554 67776 999999999999888
Q ss_pred c-eeeEEEEEEecceEee-CCCceEecCCCcEEEEeec-CCCCCCceEEEeCCCce-------eeccCCcEEEEeeccCC
Q psy17146 379 S-EDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDK-------VVGNSPNLTLLMTSDDL 448 (1011)
Q Consensus 379 ~-~~s~~l~V~~~P~~~~-~p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d 448 (1011)
. +..+.|.|..+|.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|++++... .....+.|.|.++..+|
T Consensus 103 ~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d 182 (404)
T 3p3y_A 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182 (404)
T ss_dssp EEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGG
T ss_pred EeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeecc
Confidence 6 4778899988877543 3456789999999999999 88999999999987432 23456789999999999
Q ss_pred -CeEEEEEEEEcCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceE
Q psy17146 449 -AGRYYCKASVMGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 525 (1011)
Q Consensus 449 -~G~Y~C~a~n~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~ 525 (1011)
+|.|+|.|.|..+.... ..+.+.+...+..
T Consensus 183 ~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~----------------------------------------------- 215 (404)
T 3p3y_A 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV----------------------------------------------- 215 (404)
T ss_dssp GSSCBEEEEECTTTCCEEECCCBCEEEECCSCC-----------------------------------------------
T ss_pred CCcceEEEEEeccccceeccCceeEEEeccCCc-----------------------------------------------
Confidence 59999999985443221 1222322211110
Q ss_pred EEcCCCCCcccEEEEEEecceeecCC---ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEe
Q psy17146 526 VHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLL 596 (1011)
Q Consensus 526 ~~n~~G~~~~~~~l~V~~~P~~~~~p---~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~ 596 (1011)
+..+|.+...+ ....+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...++.|.|.
T Consensus 216 ---------------~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~ 280 (404)
T 3p3y_A 216 ---------------AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280 (404)
T ss_dssp ---------------CCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEES
T ss_pred ---------------cccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEc
Confidence 01133333322 35678899999999999999999999999986543 2336789999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
++..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+.....
T Consensus 281 ~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~ 358 (404)
T 3p3y_A 281 NVSEEDSGEYFCLASN-KMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAPP 358 (404)
T ss_dssp SCCGGGCEEEEEEEEC-SSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC-EEEEEETTEEGGGSCC
T ss_pred cCCHhHCEEEEEEEEe-CCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCC-ceEEEECCEecCCCCC
Confidence 9999999999999999 57788899999999999887 4566789999999999999999999 9999999999975432
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
....... .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 359 ~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 359 NPNREVA-------GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CTTEEEE-------TTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CceEEec-------CCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 2222111 25899999999999999999999999999999998853
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=362.73 Aligned_cols=365 Identities=21% Similarity=0.348 Sum_probs=276.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec-----
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV----- 97 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v----- 97 (1011)
.....|..+|.++.+.+|++|+|.|.+.+ +.+.+.|+|++..+... ...|+.+..+ .+|.|.++
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~----~~~~~~~~~~-----~~l~i~~~~~~~~ 89 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG----MDDRKQQLPN-----GSLLIQNILHSRH 89 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTT----SCTTEEECTT-----SCEEECSCCCBTT
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccC----CcccEEEecC-----CcEEEeeeeccCC
Confidence 34577899999999999999999999987 45689999999877432 1235554332 25778777
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
+.+|+|.|+|.+.+...+ ...+..+.|.|..++ ..+.....+.+.+|+.+.|.|. +.+.|.+.+.|+|++..+..
T Consensus 90 ~~~D~G~Y~C~~~~~~~~--~~~s~~~~l~v~~p~--~~~~~~~~~~~~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~ 164 (403)
T 3laf_A 90 HKPDEGLYQCEASLGDSG--SIISRTAKVMVAGPL--RFLSQTESITAFMGDTVLLKCE-VIGDPMPTIHWQKNQQDLNP 164 (403)
T ss_dssp BCSSCEEEEEEEECGGGC--EEECCCEEEEECCCC--EECSCCCCEEEETTSCEEECCC-EECSSCCEEEEEESSSBCCC
T ss_pred CCCcceEEEEEEEeCCCc--cEEEEEEEEEecCCC--ccccCCCcEEEEcCCeEEEEEE-EcccCCCeEEEEECCEeccc
Confidence 778999999999864332 223455667766533 2334455778899999999999 67889999999999887743
Q ss_pred cee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 178 NVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
... .......+ +.|.|.+++.+|+|.|+|.|.|..+.. .+..+.+.|...|.......
T Consensus 165 ~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~~l~v~~~p~~~~~~~------------- 223 (403)
T 3laf_A 165 IPGDSRVVVLPS-------GALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLY------------- 223 (403)
T ss_dssp CTTCCSEEECTT-------SCEEECSCCGGGCEEEEEEEECSSCCC-BCCCEEEEEECCCCCCEEEE-------------
T ss_pred cCCceEEEEcCC-------ceEEEcccccccCEEEEEEEEcCCCce-eccceeEEEecCCCcccCce-------------
Confidence 111 00011112 379999999999999999999987754 23345566655554321100
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEE
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i 336 (1011)
+. .......+.+|+.++|.|.+.+.|.+ .+
T Consensus 224 --------------~~-----------------------------------~~~~~~~~~~g~~~~l~C~~~~~p~~-~~ 253 (403)
T 3laf_A 224 --------------FL-----------------------------------QRPSNVIAIEGKDAVLECCVSGYPPP-SF 253 (403)
T ss_dssp --------------EE-----------------------------------ECCCCEEEETTSCEEECCEEEEESCC-EE
T ss_pred --------------Ee-----------------------------------cCCCceEecCCCcEEEEEEcCCCCCC-eE
Confidence 00 00123456788899999999988876 89
Q ss_pred EEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEE
Q psy17146 337 RWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 337 ~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l 410 (1011)
.|++++..+.... ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..+|.+...+.+..+.+|+.+.|
T Consensus 254 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l 332 (403)
T 3laf_A 254 TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD-DSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF 332 (403)
T ss_dssp EEEETTEECCCSSSSEEEETTTEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEE
T ss_pred EEEECCeeccCCCceEEECCccEEEEeCCCHH-HCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEE
Confidence 9999998876532 2467999999998 99999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEeCCCcee------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCC
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p 476 (1011)
.|.+.|.|.+.+.|+|++.... ......|.|.++..+|+|.|+|.|.|.. +..+..+.|.|..||
T Consensus 333 ~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 333 ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA-GNAQSSAQLIVPKPA 403 (403)
T ss_dssp CCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT-EEEEEEEEEECCCC-
T ss_pred EEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCC-ceEEEEEEEEEeCCC
Confidence 9999999999999999985432 3446779999999999999999999964 345667777776654
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=361.21 Aligned_cols=339 Identities=17% Similarity=0.269 Sum_probs=263.4
Q ss_pred CCcccccCCcEEEEEEeec-CCCccEEEEEECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccce-e
Q psy17146 311 GSNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSE-D 381 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~-~p~~~~i~W~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~ 381 (1011)
.+..+.+|+.++|.|.+.+ .|. ..+.|+|+|..+.... ....|.|.++... |+|.|+|.|.|..|... .
T Consensus 14 ~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~n~~g~~~s~ 91 (395)
T 1bih_A 14 AEVLFRENNPTVLECIIEGNDQG-VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS-DEGHYQCFAETPAGVASSR 91 (395)
T ss_dssp SEEEEETTSCEEECCCEESCCSS-CEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGG-GCEEEEEEEEETTEEEECC
T ss_pred CceEEeCCCEEEEEEEEecCCCC-ceEEEEECCcCcccccceEEEecCCceEEEecCCCC-CCcEEEEEEEeCCCeEEeE
Confidence 3467899999999999999 555 4999999999886542 3568999999998 99999999999888764 4
Q ss_pred eEEEEEEecceEeeCCCceEecCCCcEEEEeec-CCCCCCceEEEeCCC-------------ceeeccCCcEEEEeeccC
Q psy17146 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDS-------------DKVVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 382 s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~-------------~~~~~~~~~L~I~~v~~~ 447 (1011)
.+.|.|...+.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++. .......+.|.|.+++.+
T Consensus 92 ~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 171 (395)
T 1bih_A 92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171 (395)
T ss_dssp CEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGG
T ss_pred EEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeec
Confidence 566766654333334556778899999999996 789999999999851 123445678999999999
Q ss_pred CCe---EEEEEEEEcCCcceeeEEEEEEc--CCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCC
Q psy17146 448 LAG---RYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522 (1011)
Q Consensus 448 d~G---~Y~C~a~n~~~~~~s~~~~v~v~--~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~ 522 (1011)
|+| .|+|.|.|..+..........+. ..+..
T Consensus 172 d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 207 (395)
T 1bih_A 172 DVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS-------------------------------------------- 207 (395)
T ss_dssp GCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSS--------------------------------------------
T ss_pred cCCCceEEEEEEEecccceEEEeeeEEecccccccc--------------------------------------------
Confidence 999 99999998654422111111110 00000
Q ss_pred ceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCC
Q psy17146 523 DYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSP 591 (1011)
Q Consensus 523 ~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~ 591 (1011)
......+|.+ .+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. ..+.
T Consensus 208 ---------------~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 270 (395)
T 1bih_A 208 ---------------GYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270 (395)
T ss_dssp ---------------CCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTS
T ss_pred ---------------cccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCc
Confidence 0000113333 35677899999999999999999999999999855432 1223
Q ss_pred cEEEeecCCCCCEEEEEEEEecCCCc-eeeEEEEEEcCCCeeecC-Cc-eeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKGRPTIISH-RT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~P~i~~~-~~-~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
.|.|.++..+|+|.|+|.|.|. .+. .+..+.|.|..+|.+... .. ..+.+|+.++|.|.+.|.|.| .+.|+++|.
T Consensus 271 ~L~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~ 348 (395)
T 1bih_A 271 RLLFKTTLPEDEGVYTCEVDNG-VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAK 348 (395)
T ss_dssp EEEESSCCGGGCEEEEEEECCS-SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTE
T ss_pred eEEEccCChhhCEEEEEEEEeC-CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCC-eeEEEECCE
Confidence 7999999999999999999994 455 445899999999998844 44 678999999999999999999 899999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+.. .++.+.. +.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 349 ~~~~---~~~~~~~--------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 349 PLSG---GRATVTD--------SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp ECCS---SSEEEET--------TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ECCC---CceEEEC--------CEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 9863 3565543 38999999999999999999999999999999876
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=357.47 Aligned_cols=330 Identities=20% Similarity=0.293 Sum_probs=264.3
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEE-CCeecCCC------cCccEEEEeeccccc-----CCcEEEEEEEcCCccc-
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYI-NDQPVPAA------ASATELYLTNITRHQ-----HDSIVKCEVHNDVGKS- 379 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k-~g~~l~~~------~~~~~L~I~~~~~~~-----d~G~Y~C~a~n~~g~~- 379 (1011)
..+.+|+.++|.|.+.+.|.+ .+.|+| ||..+... .....|.|.++..++ |+|.|+|.|.|..|..
T Consensus 14 ~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~ 92 (388)
T 2v5m_A 14 IDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92 (388)
T ss_dssp EEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE
T ss_pred EEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEE
Confidence 347789999999999999886 999999 78877642 245689999999872 3999999999999874
Q ss_pred eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCC---CceEEEeCCCcee-----------eccCCcEEEEeec
Q psy17146 380 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSDKV-----------VGNSPNLTLLMTS 445 (1011)
Q Consensus 380 ~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~~~~~~-----------~~~~~~L~I~~v~ 445 (1011)
+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++.... ....+.|.|.+++
T Consensus 93 s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 172 (388)
T 2v5m_A 93 SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172 (388)
T ss_dssp CCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCC
T ss_pred ecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCC
Confidence 5778888888888888888889999999999999987754 7899999986542 2345789999999
Q ss_pred cCCC-eEEEEEEEEcCCcceee---EEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCC
Q psy17146 446 DDLA-GRYYCKASVMGFPEVGA---EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521 (1011)
Q Consensus 446 ~~d~-G~Y~C~a~n~~~~~~s~---~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~ 521 (1011)
.+|+ |.|+|.|.|..++.... ...+.|..+...
T Consensus 173 ~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~------------------------------------------- 209 (388)
T 2v5m_A 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS------------------------------------------- 209 (388)
T ss_dssp GGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC-------------------------------------------
T ss_pred ccccCeeEEEEeccCCCCceeeccccceEEEecCCcC-------------------------------------------
Confidence 9999 99999999853322111 011222111000
Q ss_pred CceEEEcCCCCCcccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-----------eecC
Q psy17146 522 DDYSVHNDVGKSEDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------VVGN 589 (1011)
Q Consensus 522 ~~y~~~n~~G~~~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~-----------~~~~ 589 (1011)
.+|.+. .......+.+|+.++|.|.+.|.|.|.+.|+|++... ....
T Consensus 210 ---------------------~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
T 2v5m_A 210 ---------------------SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268 (388)
T ss_dssp ---------------------EEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE
T ss_pred ---------------------CCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc
Confidence 012221 1223456789999999999999999999999985332 1223
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
++.|.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .|+|+|+|.
T Consensus 269 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~ 346 (388)
T 2v5m_A 269 SGTLIIKDAVVEDSGKYLCVVNN-SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGK 346 (388)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEC-SSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC-EEEEEETTE
T ss_pred cCEEEECcCCHHHCeEEEEEEec-CCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC-eEEEEECCE
Confidence 57899999999999999999999 56778889999999998876 4567789999999999999999999 999999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+... .+.|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 347 ~i~~~----------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 347 AIGHS----------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp ECSCC----------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ECccC----------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 98631 258999999999999999999999999999999876
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=360.65 Aligned_cols=333 Identities=22% Similarity=0.383 Sum_probs=242.6
Q ss_pred cCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeec-cCcCCcEEEEEEEeCCCCcee
Q psy17146 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK-KEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
.+|+.+.|.|. +.|+|.|+|+|+|++..+..+....... .+ +.|.|.+. +.+|+|.|+|.|.|..|...
T Consensus 21 ~eg~~v~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~-------g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~- 90 (384)
T 3kld_A 21 SEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD-------GSLLINNPNKTQDAGTYQCIATNSFGTIV- 90 (384)
T ss_dssp CSCSEEEECCE-EEEESCCEEEEEETTEECCC----CEEE-ET-------TEEEEESCCHHHHCEEEEEEEEETTEEEE-
T ss_pred CCCCeEEEEeE-ecCCCCCEEEEEECCEECcCCCCccEEE-EC-------CEEEEcCCCCcccCEEEEEEEEcCcccEE-
Confidence 57999999999 6799999999999998875432221111 12 25666665 88999999999999988642
Q ss_pred EEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEE
Q psy17146 225 VARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 304 (1011)
Q Consensus 225 s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~ 304 (1011)
+....+.+...+.+.........+.+|+.+.|.|.+....+.+
T Consensus 91 s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~------------------------------------- 133 (384)
T 3kld_A 91 SREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL------------------------------------- 133 (384)
T ss_dssp CCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCE-------------------------------------
T ss_pred ecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCe-------------------------------------
Confidence 2233444444443322222233455566666666443333333
Q ss_pred EEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCCcc
Q psy17146 305 VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGK 378 (1011)
Q Consensus 305 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~ 378 (1011)
.+.|++++.++... .....|.|.++..+ |+|.|+|.|.|..|.
T Consensus 134 ------------------------------~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~ 182 (384)
T 3kld_A 134 ------------------------------SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTVTN 182 (384)
T ss_dssp ------------------------------EEEEEETTEECCCSSSEEECTTTCCEEESSCCGG-GCEEEEEEEEETTTT
T ss_pred ------------------------------EEEEEECCCCCEeeccEEEEcCCCcEEEeecCHH-HCceEEEEEeccccc
Confidence 45555555443321 23457999999998 999999999998875
Q ss_pred ce---eeEEEEEE-------ecceEe-eCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce------eeccCCcEEE
Q psy17146 379 SE---DSETLDVT-------YGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTL 441 (1011)
Q Consensus 379 ~~---~s~~l~V~-------~~P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I 441 (1011)
.. ....+.+. ..|.+. ..+....+.+|+++.|.|.+.|.|.|.+.|+|++... .....+.|.|
T Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I 262 (384)
T 3kld_A 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEI 262 (384)
T ss_dssp EEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEE
T ss_pred ceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEE
Confidence 43 22333332 234443 4567788999999999999999999999999965422 2334567999
Q ss_pred EeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCC
Q psy17146 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521 (1011)
Q Consensus 442 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~ 521 (1011)
.+++.+|+|.|+|.|.|.
T Consensus 263 ~~v~~~D~G~Y~C~a~N~-------------------------------------------------------------- 280 (384)
T 3kld_A 263 PNFQQEDAGSYECVAENS-------------------------------------------------------------- 280 (384)
T ss_dssp CSCCGGGCEEEEEEEEET--------------------------------------------------------------
T ss_pred CCCChhhCEEEEEEEEcC--------------------------------------------------------------
Confidence 999999999999999964
Q ss_pred CceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEe
Q psy17146 522 DDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLL 596 (1011)
Q Consensus 522 ~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~ 596 (1011)
.|.....+.|.|..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+. ...+++|.|.
T Consensus 281 --------~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~ 352 (384)
T 3kld_A 281 --------RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNIT 352 (384)
T ss_dssp --------TEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEES
T ss_pred --------CCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEe
Confidence 344444556777788888888889999999999999999999999999999986542 2235789999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
++..+|+|.|+|.|.| ..|.....+.|.|.
T Consensus 353 ~v~~~D~G~Y~C~A~N-~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 353 IVNLSDAGMYQCVAEN-KHGVIFSSAELSVI 382 (384)
T ss_dssp SCCGGGCEEEEEEEEE-TTEEEEEEEEEEEC
T ss_pred ecChhhCEEEEEEEEe-CCceEEeceEEEEe
Confidence 9999999999999999 68889999999885
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=350.30 Aligned_cols=355 Identities=19% Similarity=0.269 Sum_probs=267.6
Q ss_pred eccceeecCCceeE---EecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-C
Q psy17146 26 REQKFAMEPQDQTA---VVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-D 100 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v---~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~ 100 (1011)
.+|.|..+|.+..+ .+|++++|.|.+.+ +.+.+.|+|++..+... ...|+.+.. .+|.|.++.. +
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~----~~~~~~~~~------~~L~i~~~~~~~ 72 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG----PDSRYRLVA------GDLVISNPVKAK 72 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS----TTSSEEEET------TEEEEESCCHHH
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcC----CCccEEeeC------CeEEEecccccc
Confidence 47999999999887 79999999999986 67899999999877432 124555531 2799999997 9
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--c
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS--N 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~--~ 178 (1011)
|+|.|+|.+.|..+ ...+..+.|.|...+.... .....+.+.+|+.+.|.|.+..+.|.+.+.|+|++..+.. +
T Consensus 73 D~G~Y~C~a~n~~g---~~~s~~~~l~v~~~~~~~~-~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 148 (382)
T 1cs6_A 73 DAGSYQCVATNARG---TVVSREASLRFGFLQEFSA-EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD 148 (382)
T ss_dssp HCEEEEEEEEETTE---EEECCCEEEEEEEECCCCS-SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC
T ss_pred cCEEEEEEEEcCCc---EEEecceEEEeeccccccc-cCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccC
Confidence 99999999998532 2234457777776554322 2244677889999999998667789999999999876532 1
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE---EEEEEEEEe------CCceEEEecCcceee
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV---ARLKLLVKY------APKVQVSVIGSNRLV 249 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s---~~v~v~v~~------~P~~~~~~~~~~~v~ 249 (1011)
.+.. ...+. +.|.|.+++.+|+|.|+|.+.|..|..... ..+.+.+.. .|.+...
T Consensus 149 ~~~~--~~~~~------~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~-------- 212 (382)
T 1cs6_A 149 GRRF--VSQTT------GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK-------- 212 (382)
T ss_dssp SSEE--ECTTT------CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC--------
T ss_pred ceEE--EecCc------eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceecc--------
Confidence 1111 11111 379999999999999999999987643211 112233221 1111100
Q ss_pred cCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeec
Q psy17146 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEA 329 (1011)
Q Consensus 250 ~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~ 329 (1011)
......+.+|+.++|.|.+.+
T Consensus 213 -----------------------------------------------------------~~~~~~~~~G~~v~l~C~~~g 233 (382)
T 1cs6_A 213 -----------------------------------------------------------FPADTYALTGQMVTLECFAFG 233 (382)
T ss_dssp -----------------------------------------------------------CCSEEEEETTCCEEEECEEEE
T ss_pred -----------------------------------------------------------CCCceEEeCCCeEEEEEEEcc
Confidence 012345678888888888888
Q ss_pred CCCccEEEEEECCeecCC--CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCc
Q psy17146 330 NPSHMKYRWYINDQPVPA--AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG 407 (1011)
Q Consensus 330 ~p~~~~i~W~k~g~~l~~--~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~ 407 (1011)
.|.+ .+.|+|++..+.. ......|.|.++..+ |+|.|+|.|.|..|..+..+.|.|..+|.+...+....+.+|+.
T Consensus 234 ~p~~-~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~ 311 (382)
T 1cs6_A 234 NPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVDFE-DEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSD 311 (382)
T ss_dssp ESCC-EEEEEECCSCCSCCCSBSSSEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCC
T ss_pred CCCC-EEEEEECCcccccEEecCCcEEEEccCChh-hCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCe
Confidence 8876 8999998877653 245678999999998 99999999999999989999999999999999888899999999
Q ss_pred EEEEeecCCCCCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 408 VNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 408 v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
+.|.|.+.|.|.+.+.|+|++..+. ....+.|.|.++..+|+|.|+|.|.|..+ .....+.|.|
T Consensus 312 ~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V 380 (382)
T 1cs6_A 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG-TVYASAELTV 380 (382)
T ss_dssp EEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred EEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCC-eEEEEEEEEE
Confidence 9999999999999999999985432 22356899999999999999999999643 3445556655
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=351.63 Aligned_cols=355 Identities=21% Similarity=0.335 Sum_probs=258.3
Q ss_pred CCCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEe----eccCc
Q psy17146 133 DPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT----PKKEH 206 (1011)
Q Consensus 133 ~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~----~~~~~ 206 (1011)
.+|.+. ..+.+.+.+|+.+.|.|. +.|+|.++++|+|++..+.............. ++|.|. +++.+
T Consensus 15 ~~P~i~~~~~~~~~v~~G~~v~l~C~-~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~~ 87 (404)
T 3p3y_A 15 QPPTITKQSAKDHIVDPRDNILIECE-AKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS------GTLVIDFRSGGRPEE 87 (404)
T ss_dssp CCCCEEEECCTTCEECSSSCCCCCEE-ECCSSCCEEEEEETTEECCGGGCSSCBCCSSS------CCCBCCCTTTCCTTS
T ss_pred CCCcccccCCccEEEcCCCCEEEEEE-ecCCCCCeEEEEECCEEeeeecCCcceEecCC------ceEEEEeccCCCCcc
Confidence 344443 345678899999999999 78899999999999987754322111111111 345554 78899
Q ss_pred CCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccce
Q psy17146 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286 (1011)
Q Consensus 207 d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~ 286 (1011)
|+|.|+|.|.|..|.. .+..+.|.|...|...........+.+|+.++|.|.+....+.+.+.|++++.......
T Consensus 88 D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---- 162 (404)
T 3p3y_A 88 YEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD---- 162 (404)
T ss_dssp SCEEEEEEEECSSCEE-EEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC----
T ss_pred CCEEEEEEEEcCCCeE-eeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC----
Confidence 9999999999998765 35667788877776543333445566677777777764333335566665543211100
Q ss_pred EEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccC-C
Q psy17146 287 LYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQH-D 365 (1011)
Q Consensus 287 l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d-~ 365 (1011)
..+.. .....|.|.++..+ | +
T Consensus 163 -----------------------------------------------~~~~~----------~~~~~l~i~~v~~~-d~~ 184 (404)
T 3p3y_A 163 -----------------------------------------------KRVSQ----------GHNGDLYFSNVMLQ-DMQ 184 (404)
T ss_dssp -----------------------------------------------SSEEE----------CTTSCEEESSCCSG-GGS
T ss_pred -----------------------------------------------CcEEE----------cCCCcEEEEeeeec-cCC
Confidence 00110 23456999999998 6 6
Q ss_pred cEEEEEEEcCCccc---eeeEEEEEEec-------ceEeeCC---CceEecCCCcEEEEeecCCCCCCceEEEeCCCcee
Q psy17146 366 SIVKCEVHNDVGKS---EDSETLDVTYG-------PRFRARP---YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV 432 (1011)
Q Consensus 366 G~Y~C~a~n~~g~~---~~s~~l~V~~~-------P~~~~~p---~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~ 432 (1011)
|.|+|.|.|..|.. .....+.|... |.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|+|++....
T Consensus 185 G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~ 264 (404)
T 3p3y_A 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP 264 (404)
T ss_dssp SCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCC
T ss_pred cceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECC
Confidence 99999999988764 23456666542 3333222 34678999999999999999999999999986542
Q ss_pred ------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCe
Q psy17146 433 ------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506 (1011)
Q Consensus 433 ------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 506 (1011)
......|.|.+++.+|+|.|+|.|.|.
T Consensus 265 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~----------------------------------------------- 297 (404)
T 3p3y_A 265 SDKAKFENFNKALRITNVSEEDSGEYFCLASNK----------------------------------------------- 297 (404)
T ss_dssp TTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS-----------------------------------------------
T ss_pred CCcccccccCceEEEccCCHhHCEEEEEEEEeC-----------------------------------------------
Confidence 334678999999999999999999953
Q ss_pred eEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee
Q psy17146 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV 586 (1011)
Q Consensus 507 v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~ 586 (1011)
.|.....+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.|.+.|+|+|..+.
T Consensus 298 -----------------------~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~ 354 (404)
T 3p3y_A 298 -----------------------MGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354 (404)
T ss_dssp -----------------------SCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGG
T ss_pred -----------------------CCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecC
Confidence 344445556677788888888889999999999999999999999999999986543
Q ss_pred e--------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 587 V--------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 587 ~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
. ..+++|.|.++..+|+|.|+|.|.| ..|..+..+.|.|.+
T Consensus 355 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 355 SAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSN-EHGYLLANAFVSVLD 403 (404)
T ss_dssp GSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEE-TTEEEEEEEEEEEC-
T ss_pred CCCCCceEEecCCEEEEeecCHHHCEEEEEEEEe-CCCcEEEEEEEEEEe
Confidence 2 2356899999999999999999999 688888888888854
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=345.79 Aligned_cols=354 Identities=18% Similarity=0.259 Sum_probs=246.1
Q ss_pred CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEE
Q psy17146 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212 (1011)
Q Consensus 134 ~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 212 (1011)
+|.|. .+..+.+.+|+.+.|.|.+..+.|.+.++|+|++..+............+ ++|.|.+++.+|+|.|+
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~ 78 (395)
T 1bih_A 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-------GSLVFLRPQASDEGHYQ 78 (395)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTS-------CCEEESSCCGGGCEEEE
T ss_pred CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCC-------ceEEEecCCCCCCcEEE
Confidence 34444 34577889999999999954448999999999998876543211111122 37999999999999999
Q ss_pred EEEEeCCCCce-eEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEe
Q psy17146 213 CQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291 (1011)
Q Consensus 213 C~a~n~~g~~~-~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~ 291 (1011)
|.|.|..|... ....+.+.+...|.+. .....+.+|+.++|.|.+....+.+.+.|++++......
T Consensus 79 C~a~n~~g~~~s~~~~l~v~~~~~p~~~---~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~---------- 145 (395)
T 1bih_A 79 CFAETPAGVASSRVISFRKTYLIASPAK---THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN---------- 145 (395)
T ss_dssp EEEEETTEEEECCCEEEEEEEEECCCCE---EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG----------
T ss_pred EEEEeCCCeEEeEEEEEEEEEeecCCcC---CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc----------
Confidence 99999877552 2234444443344432 123345566666666665332223556666544110000
Q ss_pred eecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCc---EE
Q psy17146 292 ITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---IV 368 (1011)
Q Consensus 292 ~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G---~Y 368 (1011)
... .... ..+. + .....|.|.++..+ |+| .|
T Consensus 146 -----------------------~~~-----------~~~~-~~~~-------~---~~~~~L~i~~v~~~-d~G~~~~Y 179 (395)
T 1bih_A 146 -----------------------ADV-----------TDFD-RRIT-------A---GPDGNLYFTIVTKE-DVSDIYKY 179 (395)
T ss_dssp -----------------------GCC-----------CCCC-TTEE-------E---CTTSCEEEEEECGG-GCCSSEEE
T ss_pred -----------------------ccc-----------cccc-ccEE-------E---cCCCcEEEEEEeec-cCCCceEE
Confidence 000 0000 0000 0 22347999999998 999 99
Q ss_pred EEEEEcCCccceeeEEEEEEe-------------cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--
Q psy17146 369 KCEVHNDVGKSEDSETLDVTY-------------GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-- 433 (1011)
Q Consensus 369 ~C~a~n~~g~~~~s~~l~V~~-------------~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~-- 433 (1011)
+|.|.|..|............ .|.+ .+....+.+|+.+.|.|.+.|+|.+.+.|+|++..+..
T Consensus 180 ~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~ 257 (395)
T 1bih_A 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP 257 (395)
T ss_dssp EEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCT
T ss_pred EEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCC
Confidence 999999988765433322211 2333 35677899999999999999999999999999854321
Q ss_pred ---------ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC
Q psy17146 434 ---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP 504 (1011)
Q Consensus 434 ---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 504 (1011)
.....|.|.+++.+|+|.|+|.|.|.
T Consensus 258 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--------------------------------------------- 292 (395)
T 1bih_A 258 EDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG--------------------------------------------- 292 (395)
T ss_dssp TSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS---------------------------------------------
T ss_pred ceeEEEEecCCCceEEEccCChhhCEEEEEEEEeC---------------------------------------------
Confidence 11236999999999999999999864
Q ss_pred CeeEEeeCCeEeeccCCCceEEEcCCCCCcc-cEEEEEEecceeecCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecC
Q psy17146 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSED-SETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHED 582 (1011)
Q Consensus 505 ~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~-~~~l~V~~~P~~~~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~ 582 (1011)
.|.... .+.|.|..+|.|...+.. ..+.+|+.++|.|.+.|.|.|.+.|+|++
T Consensus 293 -------------------------~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g 347 (395)
T 1bih_A 293 -------------------------VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347 (395)
T ss_dssp -------------------------SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETT
T ss_pred -------------------------CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECC
Confidence 333322 456667778888877776 88999999999999999999999999998
Q ss_pred Cceee----cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 583 SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 583 ~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
..+.. ..++.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 348 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N-~~G~~~~~~~l~V 394 (395)
T 1bih_A 348 KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATN-EHGDKYFETLVQV 394 (395)
T ss_dssp EECCSSSEEEETTEEEESSCCSTTCEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred EECCCCceEEECCEEEEeeCCcccCEEEEEEEEc-cCCCceEEEEEEE
Confidence 55421 2345999999999999999999999 6788888888876
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=344.95 Aligned_cols=334 Identities=19% Similarity=0.313 Sum_probs=244.6
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEe-CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcC------CcEEEEE
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWID-GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH------NTTFTCQ 214 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d------~G~Y~C~ 214 (1011)
.+.+.+|+.+.|.|. +.|.|.++++|+| ++..+........ ...+ ++|.|.+++.+| +|.|+|.
T Consensus 13 ~~~~~~G~~v~l~C~-~~g~p~p~v~W~k~~g~~~~~~~~~~~-~~~~-------~~L~i~~~~~~d~~~~~d~G~Y~C~ 83 (388)
T 2v5m_A 13 RIDFSNSTGAEIECK-ASGNPMPEIIWIRSDGTAVGDVPGLRQ-ISSD-------GKLVFPPFRAEDYRQEVHAQVYACL 83 (388)
T ss_dssp EEEEETTTCEEEECE-EEEESCCEEEEEETTSCBCCCBTTTBE-ECST-------TEEEECCCCGGGCCHHHHEEEEEEE
T ss_pred eEEEEcCccEEEEEE-CCCCCCCEEEEEcCCCCccccCCCceE-EcCC-------ceEEecccChhhccccccCceEEEE
Confidence 466789999999999 6789999999999 5655543222111 1122 379999999987 9999999
Q ss_pred EEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCC--ccEEEEEeCCcccCCccccceEEEEee
Q psy17146 215 AQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS--HMKYRWYINDQPVPAAASATELYLTNI 292 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~--~~~i~W~~~~~~l~~~~~~~~l~i~~~ 292 (1011)
|.|..|.. .+..+.|.+..+|.+... .....+.+|+.++|.|.+.+.++ .+.+.|++
T Consensus 84 a~n~~g~~-~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~------------------- 142 (388)
T 2v5m_A 84 ARNQFGSI-ISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT------------------- 142 (388)
T ss_dssp EEETTEEE-ECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE-------------------
T ss_pred EEccCCeE-EecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe-------------------
Confidence 99998854 244566666666654322 23345556666666666655432 14455554
Q ss_pred ecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC----------cCccEEEEeecccc
Q psy17146 293 TRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----------ASATELYLTNITRH 362 (1011)
Q Consensus 293 ~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~----------~~~~~L~I~~~~~~ 362 (1011)
++..+... .....|.|.+++.+
T Consensus 143 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 174 (388)
T 2v5m_A 143 ------------------------------------------------DEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174 (388)
T ss_dssp ------------------------------------------------TTCCEECSSSCBTTTEEECTTSCEEESSCCGG
T ss_pred ------------------------------------------------CCCcccccccCCCCcEEEccCCcEEEecCCcc
Confidence 44332110 12357999999998
Q ss_pred cCC-cEEEEEEEcCCccc-e---eeEEEEEEec-----ceEe-eCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce
Q psy17146 363 QHD-SIVKCEVHNDVGKS-E---DSETLDVTYG-----PRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431 (1011)
Q Consensus 363 ~d~-G~Y~C~a~n~~g~~-~---~s~~l~V~~~-----P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~ 431 (1011)
|+ |.|+|.|.|..+.. . ....|.|..+ |.+. .......+.+|+.+.|.|.+.|+|.+.+.|+|++...
T Consensus 175 -d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~ 253 (388)
T 2v5m_A 175 -DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253 (388)
T ss_dssp -GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTS
T ss_pred -ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCC
Confidence 88 99999999986433 2 2235666654 3322 1234457889999999999999999999999985321
Q ss_pred -----------eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeee
Q psy17146 432 -----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500 (1011)
Q Consensus 432 -----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~ 500 (1011)
.......|.|.+++.+|+|.|+|.|.|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~----------------------------------------- 292 (388)
T 2v5m_A 254 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS----------------------------------------- 292 (388)
T ss_dssp SCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECS-----------------------------------------
T ss_pred cccccccccCceecccCEEEECcCCHHHCeEEEEEEecC-----------------------------------------
Confidence 2234568999999999999999999964
Q ss_pred CCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEe
Q psy17146 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580 (1011)
Q Consensus 501 ~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k 580 (1011)
.|.....+.|.|..+|.+...|....+.+|+.++|.|.+.|.|.|.+.|+|
T Consensus 293 -----------------------------~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~ 343 (388)
T 2v5m_A 293 -----------------------------VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343 (388)
T ss_dssp -----------------------------SCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred -----------------------------CCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence 333444555667777777777888899999999999999999999999999
Q ss_pred cCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 581 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 581 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+|..+. ..++.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 344 ~g~~i~-~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V 387 (388)
T 2v5m_A 344 DGKAIG-HSESVLRIESVKKEDKGMYQCFVRN-DRESAEASAELKL 387 (388)
T ss_dssp TTEECS-CCSSEEEESSCCGGGCEEEEEEEEC-SSCEEEEEEEEEE
T ss_pred CCEECc-cCCCEEEEecCChhhCEEEEEEEEc-CCCcEEEEEEEEe
Confidence 986553 3467999999999999999999999 6788888888876
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=339.89 Aligned_cols=344 Identities=17% Similarity=0.215 Sum_probs=246.7
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECC--eecC--------------------CCcCccEEEEeecccccCCcE
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND--QPVP--------------------AAASATELYLTNITRHQHDSI 367 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g--~~l~--------------------~~~~~~~L~I~~~~~~~d~G~ 367 (1011)
.....+.+|++++|.|.+.+.+.+ .+.|+|++ ..+. .......|.|.+++.+ |+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~-D~G~ 84 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSI-TVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAE-DESD 84 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCc-eEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChh-hCEE
Confidence 356789999999999999988765 99999975 2111 0022347999999998 9999
Q ss_pred EEEEEEcCCcc---ceeeEEEEE----EecceEeeCCCceEecCCCcEEEEeecCCCCCC--ceEEEeCCCceeec----
Q psy17146 368 VKCEVHNDVGK---SEDSETLDV----TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVG---- 434 (1011)
Q Consensus 368 Y~C~a~n~~g~---~~~s~~l~V----~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~~~~---- 434 (1011)
|+|.|.|..|. ....+.|.| ..+|.+...+....+.+|+.+.|.|.+.|.|++ .++|+|++..+...
T Consensus 85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 164 (523)
T 2rcj_C 85 YYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT 164 (523)
T ss_pred EEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec
Confidence 99999998763 235678888 356777777777778889999999999998765 99999998654211
Q ss_pred -----cC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCC
Q psy17146 435 -----NS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPP 503 (1011)
Q Consensus 435 -----~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~ 503 (1011)
.. ..|.|.++..+|+|.|+|.|.|..+.. ...+.+.+.
T Consensus 165 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~------------------------------ 213 (523)
T 2rcj_C 165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTEC------------------------------ 213 (523)
T ss_pred cccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-ccceeeeec------------------------------
Confidence 11 258999999999999999999864321 111111100
Q ss_pred CCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecC-CCC-eEEEEec
Q psy17146 504 PEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHE 581 (1011)
Q Consensus 504 ~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~p-~v~W~k~ 581 (1011)
..+..+|.+...+....+.+|+.+.|.|.+.|. |.| .++|+|+
T Consensus 214 -----------------------------------~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~ 258 (523)
T 2rcj_C 214 -----------------------------------SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSG 258 (523)
T ss_pred -----------------------------------CCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecC
Confidence 001123444433333456789999999999987 878 8999999
Q ss_pred CCceee-------cCC------CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee--cCCcee-eecCCc
Q psy17146 582 DSDKVV-------GNS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQF-GIPGDT 645 (1011)
Q Consensus 582 ~~~~~~-------~~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~-v~~G~~ 645 (1011)
+..+.. ..+ +.|.|.++..+| |.|+|.|.| ..+.....+.|.|..+|.+. .+.... +.+|+.
T Consensus 259 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n-~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~ 336 (523)
T 2rcj_C 259 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNH-KPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT 336 (523)
T ss_pred CcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEe-CCCCcceEEecCCCcCceEEecCCCchhhcccCCc
Confidence 865321 122 379999999999 999999999 46666677777777777653 333333 788999
Q ss_pred EEEEEEEEecCCC---CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFSIPPP---EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g~p~p---~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
++|.|.+.|.|++ ..|+|+|+|..+............+ ......+.|.|.++..+|.|.|+|.|.|..|.......
T Consensus 337 ~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 415 (523)
T 2rcj_C 337 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYN-STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKT 415 (523)
T ss_pred eEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCC-CcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEE
Confidence 9999999997532 3899999999987432111111110 00112467999999999999999999999887765555
Q ss_pred EE
Q psy17146 723 LK 724 (1011)
Q Consensus 723 l~ 724 (1011)
|.
T Consensus 416 ~~ 417 (523)
T 2rcj_C 416 IS 417 (523)
T ss_pred EE
Confidence 54
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=331.92 Aligned_cols=338 Identities=16% Similarity=0.161 Sum_probs=240.4
Q ss_pred ceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecC-CCceeEEEEeecccCCCceE
Q psy17146 36 DQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+.+.+|++|+|.|.+.+ +.+.+.|+|++..+... .......|+.+..+. ..+.++|.|.+++.+|+|.|
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 468899999999999986 66799999998532111 011223566554210 22456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+. ...+.|.|... ...+...+.+|+.+.|.|. +.+.|.+.++|+|++..+..
T Consensus 83 ~C~~~n~--------~~~~~l~V~~~------~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~-------- 139 (363)
T 1wio_A 83 ICEVEDQ--------KEEVQLLVFGL------TANSDTHLLQGQSLTLTLE-SPPGSSPSVQCRSPRGKNIQ-------- 139 (363)
T ss_dssp EEEETTE--------EEEEEEEEEEE------EESSCSSEESBSCEEEEEE-CCTTCCCCEEEECSSSCEEE--------
T ss_pred EEEEEEC--------CCcEEEEEEeC------CCCCceEEecCCCEEEEEE-cCCCCCCeEEEEcCCCcccc--------
Confidence 9999874 23577777642 2222346789999999999 66799999999998765411
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccC--
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN-- 263 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~-- 263 (1011)
....|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|...|... ....+.+|+.+.|.|.+.+.
T Consensus 140 --------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~ 205 (363)
T 1wio_A 140 --------GGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVE 205 (363)
T ss_dssp --------ESSEEEECSBCGGGCEECEEEEEETTEEE--EECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCC
T ss_pred --------cceEEEEeeCChhcCCEEEEEEecCCCeE--EEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccc
Confidence 12489999999999999999999875433 455566666666543 33457789999999988774
Q ss_pred --CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE-
Q psy17146 264 --PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI- 340 (1011)
Q Consensus 264 --~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k- 340 (1011)
.+.+.+.|+++|..+.... +...... . .+.+..
T Consensus 206 ~~~P~p~i~W~~~g~~~~~~~----------------------------------------~~~~~~~--~--~~~~~~~ 241 (363)
T 1wio_A 206 KLTGSGELWWQAERASSSKSW----------------------------------------ITFDLKN--K--EVSVKRV 241 (363)
T ss_dssp SSCEEEEEEEEESSCCCCCCE----------------------------------------EEEEECS--S--CEEEEEE
T ss_pred cCCCceeEEEecCCCCccceE----------------------------------------EEEEecC--C--eeecccc
Confidence 3457899998887653210 0000000 0 111111
Q ss_pred -CCee-cCCCcCccEEEEeecccccCCcEEEEEEEcC--CccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCC
Q psy17146 341 -NDQP-VPAAASATELYLTNITRHQHDSIVKCEVHND--VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 416 (1011)
Q Consensus 341 -~g~~-l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~--~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g 416 (1011)
.+.. .........|.|.++..+ |+|.|+|.|.|. .|..+..+.|.|... .|+.+.|.|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v-------------~g~~~~l~C~~~g 307 (363)
T 1wio_A 242 TQDPKLQMGKKLPLHLTLPQALPQ-YAGSGNLTLALEAKTGKLHQEVNLVVMRA-------------TQLQKNLTCEVWG 307 (363)
T ss_dssp ECSSCCBCCSSSSCEEEESSBCGG-GCEEEEEEECBTTTTCCEEEEEEEEEEEE-------------CCCSSSEEEEEES
T ss_pred ccchhhhcccCCceEEEEccCCcC-cCcEEEEEEEEhhhcCeEEEEEeEEEEEe-------------cCCCeeEEEEEcc
Confidence 0000 011133458999999998 999999999999 998888888888721 1899999999999
Q ss_pred CCCCc--eEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 417 NPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 417 ~p~p~--v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
.|.|. +.|+|++..... +..|.|.++..+|+|.|+|.|.|.+....+..+.|
T Consensus 308 ~p~p~~~i~W~~~~~~~~~--~~~l~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~V 361 (363)
T 1wio_A 308 PTSPKLMLSLKLENKEAKV--SKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361 (363)
T ss_dssp SCCTTCCEEEECSSSSCSE--EESSSEEEESSCCSEEEEEEECSSSSCCEEEEEEE
T ss_pred ccCCCccEEEEeCCCceee--eeeeeeeeeccccceeEEEEEecCCeEEEecceEe
Confidence 99998 999999976543 45688999999999999999998665555544443
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=328.34 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=232.0
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCC-------------------------CcCccEEEEeecccccCCcE
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-------------------------AASATELYLTNITRHQHDSI 367 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~-------------------------~~~~~~L~I~~~~~~~d~G~ 367 (1011)
..+.+|+.++|.|.+.+.|.+ .+.|+|++..+.. ......|.|.+++.+ |+|.
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~-D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE-DSDT 81 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGG-GCEE
T ss_pred EEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHH-HCEE
Confidence 457899999999999987775 9999999854210 012557999999998 9999
Q ss_pred EEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccC
Q psy17146 368 VKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 368 Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~ 447 (1011)
|+|.|.|.. ..+.|.|.. +...|. ..+.+|++++|.|.+.+.|.+.+.|++++... ......|.|.+++.+
T Consensus 82 Y~C~~~n~~----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~L~i~~v~~~ 152 (363)
T 1wio_A 82 YICEVEDQK----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-IQGGKTLSVSQLELQ 152 (363)
T ss_dssp EEEEETTEE----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE-EEESSEEEECSBCGG
T ss_pred EEEEEEECC----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-cccceEEEEeeCChh
Confidence 999998864 366777764 333443 46889999999999999999999999998665 446788999999999
Q ss_pred CCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEE
Q psy17146 448 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH 527 (1011)
Q Consensus 448 d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~ 527 (1011)
|+|.|+|.|.|.+ ......+.
T Consensus 153 d~G~Y~C~a~~~~-~~~~~~~~---------------------------------------------------------- 173 (363)
T 1wio_A 153 DSGTWTCTVLQNQ-KKVEFKID---------------------------------------------------------- 173 (363)
T ss_dssp GCEECEEEEEETT-EEEEECCE----------------------------------------------------------
T ss_pred cCCEEEEEEecCC-CeEEEEEE----------------------------------------------------------
Confidence 9999999999752 12222222
Q ss_pred cCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEec-----CCCCeEEEEecCCceee---------------
Q psy17146 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-----NPAPEITWIHEDSDKVV--------------- 587 (1011)
Q Consensus 528 n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-----~p~p~v~W~k~~~~~~~--------------- 587 (1011)
|.|..+|.. +....+.+|+.+.|.|.+.+ .|.|.+.|+++|..+..
T Consensus 174 -----------l~v~~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 239 (363)
T 1wio_A 174 -----------IVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVK 239 (363)
T ss_dssp -----------ECEECCSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEE
T ss_pred -----------EEEecCCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeecc
Confidence 233323322 24667889999999998887 78899999999854322
Q ss_pred ----------cC--CCcEEEeecCCCCCEEEEEEEEecC--CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEE
Q psy17146 588 ----------GN--SPNLTLLMTSDDLAGRYYCKASVMG--FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAF 653 (1011)
Q Consensus 588 ----------~~--~~~L~I~~v~~~d~G~Y~C~a~n~~--~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~ 653 (1011)
.. ...|.|.++..+|+|.|+|.|.| . .|..+..+.|.|.. ..|+.++|.|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~~~g~~~~~~~l~V~~------------v~g~~~~l~C~~~ 306 (363)
T 1wio_A 240 RVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL-EAKTGKLHQEVNLVVMR------------ATQLQKNLTCEVW 306 (363)
T ss_dssp EEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECB-TTTTCCEEEEEEEEEEE------------ECCCSSSEEEEEE
T ss_pred ccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEE-hhhcCeEEEEEeEEEEE------------ecCCCeeEEEEEc
Confidence 02 34899999999999999999999 5 57888888888872 1289999999999
Q ss_pred ecCCCCe--EEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 654 SIPPPEK--VTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 654 g~p~p~~--v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.|.| . ++|+|+|..+.. ...|.|.++..+|+|.|+|.|+|. |....+..|.|
T Consensus 307 g~p~p-~~~i~W~~~~~~~~~-----------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 307 GPTSP-KLMLSLKLENKEAKV-----------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp SSCCT-TCCEEEECSSSSCSE-----------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred cccCC-CccEEEEeCCCceee-----------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 99988 6 999999987752 246788999999999999999975 66666666665
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=325.73 Aligned_cols=374 Identities=17% Similarity=0.246 Sum_probs=246.1
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|...|.++.+.+|++|+|.|.+.+.. +.+.|+|++ ..+. . .......+|+.+.. ..+.++|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence 366678999999999999999998754 379999974 2210 0 00011235777654 2356789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
+++.+|+|.|+|.+.+.... ..+..+.|.|.....+|.+.. .+.....+|+.+.|.|.+.++.|.+ +++|+|++.
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~ 157 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPL---TFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 157 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTC---CBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred CCcCcCCeeEEEEEecCCCc---cccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence 99999999999999886431 224457788866544555543 2222334688999999955557887 999999998
Q ss_pred eeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe-CCceEEEecCcceeecC
Q psy17146 174 TVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEG 251 (1011)
Q Consensus 174 ~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~-~P~~~~~~~~~~~v~~g 251 (1011)
.+..+....... ......+...+.|.|.++..+|+|.|+|.|.|..+... +.+.+.. .+.+.+..+....+.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~G 233 (438)
T 1qgc_4 158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP----IVKSFNRNECEVMLVESGGGLVKPG 233 (438)
T ss_dssp EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC----EEEEEETTC-CCEEEEECCEEECTT
T ss_pred EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCc----eecccccccceeEEecCCceEEecC
Confidence 876552221112 22233455568999999999999999999999888652 2222221 22233334445567788
Q ss_pred ceEEEEEEcccCCC-ccEEEEEeC--CcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEee
Q psy17146 252 TDVRLYCKAEANPS-HMKYRWYIN--DQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAE 328 (1011)
Q Consensus 252 ~~v~L~C~~~~~~~-~~~i~W~~~--~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~ 328 (1011)
+.++|.|.+.+.+. .+.+.|+++ ++. +.+.....
T Consensus 234 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~-------------------------------------------~~~~~~~~ 270 (438)
T 1qgc_4 234 GSLKLSCTASGFIFNRCAMSWVRQTPEKR-------------------------------------------LEWVATIS 270 (438)
T ss_dssp CCEEEEEEEESSCGGGSCEEEEEEETTTE-------------------------------------------EEEEEEEC
T ss_pred CcEEEEEEEcccccCCcEEEEEECCCCCC-------------------------------------------cEEEEEEe
Confidence 88888888887762 467788774 221 11100000
Q ss_pred cCCC--------ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCc-----cceeeEEEEEEe----cc
Q psy17146 329 ANPS--------HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-----KSEDSETLDVTY----GP 391 (1011)
Q Consensus 329 ~~p~--------~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g-----~~~~s~~l~V~~----~P 391 (1011)
.... .-.+.-..+ .......|.|.+++.+ |+|.|+|.|.|..+ .......|.|.. +|
T Consensus 271 ~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P 344 (438)
T 1qgc_4 271 SGGTYTYYPDSVKGRFTISRD-----NAKNTLYLQMSSLRSA-DTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPP 344 (438)
T ss_dssp TTSCCEECCGGGTTTEEEEEE-----TTTTEEEEEECSCCGG-GCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCC
T ss_pred ecCCceecCcccCCcEEEEee-----cCCCeEEEEECCCChh-hCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCC
Confidence 0000 001111100 0123458999999998 99999999999554 223556777773 56
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCCceee-------cc-----CCcEEEEeeccCCCeEEEEEEE
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDSDKVV-------GN-----SPNLTLLMTSDDLAGRYYCKAS 457 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~~~~~-------~~-----~~~L~I~~v~~~d~G~Y~C~a~ 457 (1011)
.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++..+.. .. ...|.|.++..+| |.|+|.|.
T Consensus 345 ~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~ 423 (438)
T 1qgc_4 345 SVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA 423 (438)
T ss_dssp EEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEE
T ss_pred eEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEE
Confidence 55444334457789999999999997 888 9999999865321 11 1248899998889 99999999
Q ss_pred EcCC
Q psy17146 458 VMGF 461 (1011)
Q Consensus 458 n~~~ 461 (1011)
|..+
T Consensus 424 n~~g 427 (438)
T 1qgc_4 424 HPAS 427 (438)
T ss_dssp EGGG
T ss_pred eCCC
Confidence 9644
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=332.38 Aligned_cols=340 Identities=19% Similarity=0.297 Sum_probs=239.3
Q ss_pred eCCcccccCCcEEEEEEeecCCCc---cEEEEEECC--eec--------------CC------CcCccEEEEeecccccC
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSH---MKYRWYIND--QPV--------------PA------AASATELYLTNITRHQH 364 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~---~~i~W~k~g--~~l--------------~~------~~~~~~L~I~~~~~~~d 364 (1011)
.....+.+|++++|.|.+.+.+.+ ..+.|+|++ ..+ .. ......|.|.+++.+ |
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~-D 86 (438)
T 1qgc_4 8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEAD-D 86 (438)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGG-G
T ss_pred CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCc-C
Confidence 345678999999999999888763 589999963 221 00 012357999999998 9
Q ss_pred CcEEEEEEEcCCccc-eeeEEEEEEe---cceEeeCCCceEecCCCcEEEEeecCC-CCCC-ceEEEeCCCceeec----
Q psy17146 365 DSIVKCEVHNDVGKS-EDSETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDG-NPAP-EITWIHEDSDKVVG---- 434 (1011)
Q Consensus 365 ~G~Y~C~a~n~~g~~-~~s~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~p-~v~W~k~~~~~~~~---- 434 (1011)
+|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+.+|+.+.|.|.+.| .|.+ .|+|+|++..+...
T Consensus 87 ~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 166 (438)
T 1qgc_4 87 VATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS 166 (438)
T ss_dssp CEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE
T ss_pred CeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec
Confidence 999999999987754 4567777764 677665443334457889999999977 6777 99999988543211
Q ss_pred ------c------CCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCC
Q psy17146 435 ------N------SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502 (1011)
Q Consensus 435 ------~------~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~ 502 (1011)
. ...|.|.++..+|+|.|+|.|.|..+.. .+.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~---------------------------- 215 (438)
T 1qgc_4 167 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNR---------------------------- 215 (438)
T ss_dssp EECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEET----------------------------
T ss_pred cccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceeccccc----------------------------
Confidence 1 2368999999999999999999864332 11111110
Q ss_pred CCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEe
Q psy17146 503 PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIH 580 (1011)
Q Consensus 503 ~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k 580 (1011)
..++.+...+....+.+|+.++|.|.+.|.| .+.+.|+|
T Consensus 216 ---------------------------------------~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k 256 (438)
T 1qgc_4 216 ---------------------------------------NECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVR 256 (438)
T ss_dssp ---------------------------------------TC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred ---------------------------------------ccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEE
Confidence 0011112234456789999999999999998 67999999
Q ss_pred c--CCcee-----------------------e-----cCCCcEEEeecCCCCCEEEEEEEEecCC----CceeeEEEEEE
Q psy17146 581 E--DSDKV-----------------------V-----GNSPNLTLLMTSDDLAGRYYCKASVMGF----PEVGAEATVYL 626 (1011)
Q Consensus 581 ~--~~~~~-----------------------~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V 626 (1011)
+ +.... . ....+|.|.+++.+|+|.|+|.|.|... ......+.|.|
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V 336 (438)
T 1qgc_4 257 QTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTV 336 (438)
T ss_dssp EETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEE
T ss_pred CCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEE
Confidence 7 32211 0 1124899999999999999999998321 12334567777
Q ss_pred c----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 627 K----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 627 ~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
. .+|.+. .++...+.+|+.++|.|.+.|. |.|+.|.|+++|..+....... +... ......+.|.|.++..
T Consensus 337 ~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~--~~~~-g~~~~~s~L~i~~~~~ 413 (438)
T 1qgc_4 337 SAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA--VLQS-DLYTLSSSVTVPSSTW 413 (438)
T ss_dssp CSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC--EEET-TEEEEEEEEEEEEEHH
T ss_pred ecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc--cccC-CcEEEEEEEEEehhhc
Confidence 6 356654 3334457789999999999998 8777899999998875321111 1111 0011245799999998
Q ss_pred CCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 701 DHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
+| |.|+|.|.|..|.......|.
T Consensus 414 ~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 414 PS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp HH-SCCEEEEEEGGGTEEEEEECC
T ss_pred CC-ceEEEEEEeCCCCcceeeecC
Confidence 89 999999999999887776654
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=299.56 Aligned_cols=260 Identities=24% Similarity=0.412 Sum_probs=216.0
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 83 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence 47889999999999999999999999999999999999985432 123467999999999999999999974
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.+ ..+..+.|
T Consensus 84 ~g----------------------------------------------------------------------~~~~~~~l 93 (284)
T 2rik_A 84 AG----------------------------------------------------------------------KDSCSAQL 93 (284)
T ss_dssp TE----------------------------------------------------------------------EEEEEEEE
T ss_pred Cc----------------------------------------------------------------------eEEEEEEE
Confidence 32 22233344
Q ss_pred EEEecceeecCC-ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEE
Q psy17146 540 DVTYGPRFRARP-YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 540 ~V~~~P~~~~~p-~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.|..+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .....|.|.++..+|+|.|+|.
T Consensus 94 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (284)
T 2rik_A 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173 (284)
T ss_dssp EEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred EccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence 555666655443 356688999999999999999999999999855432 2346799999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
|.| ..+..+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+.. .+
T Consensus 174 a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~--~~~~~~~~----~~ 245 (284)
T 2rik_A 174 AHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRS--GKKYKIMS----EN 245 (284)
T ss_dssp EEC-SSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCC-EEEEEETTEEECB--TTTEEEEE----ET
T ss_pred EEc-CCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCC-EEEEEECCEECcC--CCCEEEEE----cC
Confidence 999 577888899999999999874 456678999999999999999999 9999999999974 45565554 33
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|+
T Consensus 246 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 246 FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 45799999999999999999999999999999999885
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=315.90 Aligned_cols=373 Identities=15% Similarity=0.197 Sum_probs=233.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC--Cc---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+. .. ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (444)
T 1igt_B 5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS 84 (444)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence 35677899999999999999864 4589999864 2210 00 0011236888877655678899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.... ....+..+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 163 (444)
T 1igt_B 85 RLKSEDTAMYYCARHGGYYA-MDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 163 (444)
T ss_dssp SCCGGGCEEEEEEEECSSSC-EEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCHHHCEEEEEEEecCCcc-cccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCC
Confidence 99999999999999885321 112334467888742 2334433 23333457899999999955446876 99999988
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT 252 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~ 252 (1011)
..+...... ..... ..+...+.|.|.++..+| |.|+|.|.|..+.......+.+ ...... ...
T Consensus 164 ~~~~~~~~~--~~~~~-~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~--~~~~~~--------~~~--- 226 (444)
T 1igt_B 164 LSSGVHTFP--AVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP--RGPTIK--------PCP--- 226 (444)
T ss_dssp BCTTEEECC--CEEET-TEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCC--CCCSCC--------CCC---
T ss_pred CCCCeEecC--ccccC-CcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEecc--CCCCcc--------cCC---
Confidence 763211000 00112 344455789999999999 9999999999886532222221 000000 000
Q ss_pred eEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcc--cccCCcEEEEEEeecC
Q psy17146 253 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR--LVEGTDVRLYCKAEAN 330 (1011)
Q Consensus 253 ~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~--v~~g~~v~l~C~~~~~ 330 (1011)
...|.+......+.+... .+... +.+|++++|.|.+.+.
T Consensus 227 --~~~~~~~~~~~~p~v~~~-------------------------------------~p~~~~~~~~G~~~~L~C~~~g~ 267 (444)
T 1igt_B 227 --PCKCPAPNLLGGPSVFIF-------------------------------------PPKIKDVLMISLSPIVTCVVVDV 267 (444)
T ss_dssp --CCSCCCSCCCCCCEEEEE-------------------------------------CCCHHHHHCTTSCCEEEEEEEEE
T ss_pred --ccccCCcccCCCceEEec-------------------------------------CCchhheeecCCCcEEEEEEeec
Confidence 000000000000111000 01112 4778888888888887
Q ss_pred C---CccEEEEEECCeecCCCc-------------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE----EEEec
Q psy17146 331 P---SHMKYRWYINDQPVPAAA-------------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL----DVTYG 390 (1011)
Q Consensus 331 p---~~~~i~W~k~g~~l~~~~-------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l----~V~~~ 390 (1011)
+ ++..++|+|+|..+.... ....|.|.++..+ |+|.|+|.|.|..|.......+ .+..+
T Consensus 268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~ 346 (444)
T 1igt_B 268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM-SGKEFKCKVNNKDLPAPIERTISKPKGSVRA 346 (444)
T ss_dssp CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH-TTCEEEEEEECTTCSSCEEEEEECCCCCCBC
T ss_pred ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhc-cCCcEEEEEEcCCCCCceEEEEeccCCCCCC
Confidence 3 335889999888765421 1247999999987 9999999999998876333333 44567
Q ss_pred ceEeeCCCceEecCCCcEEEEeecCC-CCCC-ceEEEeCCCcee--------eccCCc------EEEEeeccCCCeEEEE
Q psy17146 391 PRFRARPYSVQVDRGAGVNLLCDVDG-NPAP-EITWIHEDSDKV--------VGNSPN------LTLLMTSDDLAGRYYC 454 (1011)
Q Consensus 391 P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~p-~v~W~k~~~~~~--------~~~~~~------L~I~~v~~~d~G~Y~C 454 (1011)
|.+...+......+++.++|.|.+.| .|.+ .|+|+|++..+. ....+. |.|.....+|.|.|+|
T Consensus 347 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC 426 (444)
T 1igt_B 347 PQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSC 426 (444)
T ss_dssp CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEE
T ss_pred CEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEE
Confidence 87765443222233445999999988 5665 899999985431 122333 3444445567999999
Q ss_pred EEEEcCCc
Q psy17146 455 KASVMGFP 462 (1011)
Q Consensus 455 ~a~n~~~~ 462 (1011)
.|.|....
T Consensus 427 ~a~n~~l~ 434 (444)
T 1igt_B 427 SVVHEGLH 434 (444)
T ss_dssp EEECTTSG
T ss_pred EEECCCcC
Confidence 99996543
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=288.60 Aligned_cols=261 Identities=21% Similarity=0.350 Sum_probs=210.2
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEe-CCCcee-----------eccCCcEEEEeeccCCCeEEEEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH-EDSDKV-----------VGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k-~~~~~~-----------~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
++.+...|.+..+.+|+.+.|.|.+.+.| .+.+.|+| ++.... ......|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 46677888899999999999999999987 68999999 553221 113457999999999999999999
Q ss_pred EEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 457 ~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
.|..+...+..+.
T Consensus 82 ~n~~g~~~~~~~~------------------------------------------------------------------- 94 (291)
T 1qz1_A 82 TAEDGTQSEATVN------------------------------------------------------------------- 94 (291)
T ss_dssp ECTTSCEEEEEEE-------------------------------------------------------------------
T ss_pred EcCCCCeeEEEEE-------------------------------------------------------------------
Confidence 9764433333333
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|
T Consensus 95 --l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 172 (291)
T 1qz1_A 95 --VKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172 (291)
T ss_dssp --EEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEE
T ss_pred --EEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEE
Confidence 344556666677778889999999999999999999999999986542 3456789999999999999999
Q ss_pred EEEecC-CCceeeEEEEEEcCCCeeecC---CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC--CCeEEec
Q psy17146 609 KASVMG-FPEVGAEATVYLKGRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--DDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~-~~~~s~~~~l~V~~~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~--~~~~~~~ 682 (1011)
.|.|.. .......+.|.|..+|.+... ....+..|+.++|.|.+.|.|.| .+.|+++|..+..... .++.+..
T Consensus 173 ~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~ 251 (291)
T 1qz1_A 173 EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSD 251 (291)
T ss_dssp EEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECT
T ss_pred EEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC-cEEEEECCEECcCCCCCCcceEEcC
Confidence 999943 333556788889889988743 24568899999999999999999 9999999999875332 2444432
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|..+..+.|.|.
T Consensus 252 ------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 252 ------DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp ------TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ------CCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 24789999999999999999999999999999999885
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=302.18 Aligned_cols=291 Identities=20% Similarity=0.262 Sum_probs=228.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec--CCce-----------ee---cCCCcEEEeecCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDK-----------VV---GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~--~~~~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
+|.|.. +.+..+.+|+.++|.|.+.|.|.|.+.|+|+ +..+ .. ...+.|.|.++..+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 366666 5677788899999999999999999999999 4222 11 12468999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCeeecCCc-eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~-~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
|.|.| ..|..+..+.|.|..+|.|..+.. ..+.+|+.+.|.|.+.|.|.+ .+.|+++|..+......++.+..
T Consensus 80 C~a~n-~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~---- 153 (389)
T 2jll_A 80 CEAAS-RIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYS---- 153 (389)
T ss_dssp EEEEC-SSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCC-EEEEEETTEESSCTTCTTEEEEE----
T ss_pred EEEEe-CCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCC-eEEEEECCccCCcccCceEEEec----
Confidence 99999 577789999999999999986544 468899999999999999998 99999999999865545666654
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGN 766 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 766 (1011)
.+..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.+. ..+.+|..
T Consensus 154 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~--------------------------------~~P~~P~~ 201 (389)
T 2jll_A 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA--------------------------------DVPSSPYG 201 (389)
T ss_dssp CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC--------------------------------CCCCCCEE
T ss_pred cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec--------------------------------CCCCCCcc
Confidence 3345789999999999999999999999998888887762 23446777
Q ss_pred Ccccccccccccccc--cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCCCC
Q psy17146 767 GIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSETG 818 (1011)
Q Consensus 767 ~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~~s 818 (1011)
+.+......++.++| +..+++.+|..|.|+++.... .|++.|.| | .|.|.+|
T Consensus 202 ~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s 281 (389)
T 2jll_A 202 VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281 (389)
T ss_dssp EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCC
T ss_pred eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCC
Confidence 778888888999999 556778899999999886432 77788999 4 7888888
Q ss_pred -cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 819 -SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 819 -s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
...+.|.+..|..+|. +.... .+.+...++|+|+ ...||++.+|+|+||+.+...
T Consensus 282 ~~~~~~t~~~~~p~~p~-~~~~~---~~~~~v~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~ 337 (389)
T 2jll_A 282 KIEIFQTLPVREPSPPS-IHGQP---SSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKED 337 (389)
T ss_dssp CCEEEECCCCCCCCCCC-EEEEE---ETTTEEEEEECCC--CCCSSCCCEEEEEEEC-----
T ss_pred cceEEEecCCCCCCCCc-ccccc---CcCCEEEEEEECC--CCCCCcccEEEEEEEeCCCCc
Confidence 4456676665666664 22211 1344456699984 457789999999999865443
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=279.91 Aligned_cols=272 Identities=20% Similarity=0.329 Sum_probs=204.7
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..++.+... .+..+|.|.+++.+|+|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~------~~~~~~~~~--~~~~~L~i~~v~~~d~G 74 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP------GGNYKMTLV--ENTATLTVLKVTKGDAG 74 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCS------SSSEEEEEE--TTEEEEEESSCCGGGCE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcC------CCcEEEEEc--CCEEEEEEecCCcccCE
Confidence 45799999999999999999999999997 5679999999987643 234444322 24568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.|+|.+.+.. +..+..+.|.|..+|... ....+...+.+|+.+.|.|. +.+.|.+.+.|+|++..+....++..
T Consensus 75 ~Y~C~~~n~~----g~~~~~~~l~V~~~p~~~-~~~~~~~~v~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~ 148 (284)
T 2rik_A 75 QYTCYASNVA----GKDSCSAQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECK-IGGSPEIKVLWYKDETEIQESSKFRM 148 (284)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEECCCEEE-ECCCSEEEEETTCCEEEEEE-EESSSCCEEEEEETTEECCCSSSEEE
T ss_pred EEEEEEEECC----ceEEEEEEEEccCCCccc-ccCCCceEecCCceEEEEEE-EeeeCCCEEEEEECCEECcCCCcEEE
Confidence 9999999853 345677888888765321 12234566889999999999 67889999999999988866554433
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~ 263 (1011)
..... ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+... +.
T Consensus 149 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~-~~------------------- 200 (284)
T 2rik_A 149 SFVES------VAVLEMYNLSVEDSGDYTCEAHNAAGSA--SSSTSLKVKEPPVFRKK-PH------------------- 200 (284)
T ss_dssp EEETT------EEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEEECCCBCCSC-CC-------------------
T ss_pred EEcCC------EEEEEECCCCcccCEEEEEEEEcCCCce--eEEEEEEEecCCcceeC-CC-------------------
Confidence 32222 3689999999999999999999998865 55667777777654321 11
Q ss_pred CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCe
Q psy17146 264 PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ 343 (1011)
Q Consensus 264 ~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~ 343 (1011)
...+.+|+.++|.|.+.+.|.+ .+.|++++.
T Consensus 201 ------------------------------------------------~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~~~ 231 (284)
T 2rik_A 201 ------------------------------------------------PVETLKGADVHLECELQGTPPF-QVSWHKDKR 231 (284)
T ss_dssp ------------------------------------------------CEEECTTCCEEEEEECBSSSCC-EEEEEETTE
T ss_pred ------------------------------------------------cceecCCCeEEEEEEEEecCCC-EEEEEECCE
Confidence 1234556666666666666554 677777766
Q ss_pred ecCCC--------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 344 PVPAA--------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 344 ~l~~~--------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
.+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 232 ELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EECBTTTEEEEEETTEEEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ECcCCCCEEEEEcCCEEEEEEcCCCcc-cCEEEEEEEEeCCCceeEEEEEEEc
Confidence 66543 12358999999998 9999999999999999888888874
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=287.90 Aligned_cols=264 Identities=20% Similarity=0.310 Sum_probs=196.7
Q ss_pred EecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--------cc--CCcEEEEeecc-CCCeEEEEEE
Q psy17146 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GN--SPNLTLLMTSD-DLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~--------~~--~~~L~I~~v~~-~d~G~Y~C~a 456 (1011)
..+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+.. .. ...|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 3578999999999999999999999999999999999999854321 11 14699999998 9999999999
Q ss_pred EEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 457 ~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
.|..+. .+..+.|.|..++....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~p~-------------------------------------------------------- 106 (304)
T 2yd9_A 84 QNSVGE-ITVHAKLTVLREDQLPS-------------------------------------------------------- 106 (304)
T ss_dssp ECSSCE-ECCEEEEEEECGGGCCT--------------------------------------------------------
T ss_pred ECCCCe-EEEEEEEEEeccccCCC--------------------------------------------------------
Confidence 975332 33444444432211000
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee---------ecCCCcEEEeecCCCCCEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..|.+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+
T Consensus 107 ------~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 180 (304)
T 2yd9_A 107 ------GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180 (304)
T ss_dssp ------TCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEE
T ss_pred ------CCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEE
Confidence 01566677778889999999999999999999999999985432 344679999999999999999
Q ss_pred EEEEecCCCcee-eEEEEEEc---CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 608 CKASVMGFPEVG-AEATVYLK---GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 608 C~a~n~~~~~~s-~~~~l~V~---~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
|.|.|. .+... ..+.|.|. .+|.+. .+....+.+|+.++|.|.+.|.|.| .|.|+++|..+.... ++.
T Consensus 181 C~a~n~-~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~l~~~~--~~~--- 253 (304)
T 2yd9_A 181 CVATNS-AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP-YVKWMQGAEDLTPED--DMP--- 253 (304)
T ss_dssp EEEEET-TEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC-EEEEEETTEECSCSS--SCC---
T ss_pred EEEEeC-CCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC-EEEEEECCEECCCcc--ccc---
Confidence 999994 44433 22455553 567776 4456678999999999999999999 999999999987422 211
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.....|.|.++ +|+|.|+|.|.|.+|..+.++.|.|.+.
T Consensus 254 -----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 254 -----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp -----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred -----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 12356888776 5899999999999999999999998643
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=301.60 Aligned_cols=378 Identities=15% Similarity=0.213 Sum_probs=234.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC---C--------cccCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG---P--------HRNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~---~--------~~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
...+|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+. . .......+|+.+..+...+.++|+
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 4457889999999999999999863 45899999642 110 0 001112468888766556778999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcc--eeeeEEEEEEEc-CCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-c-EEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPA--IRSRFATLTVLV-PPDPPRIVQGDTLYTTEDREIELECISANGKPP-A-EITW 168 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~--~~s~~~~l~V~~-~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~-~i~W 168 (1011)
|.+++.+|+|.|+|.+.+..+.... .....+.|+|.. .+.+|.+.......+.+|+.+.|.|.+.+..|. + .|+|
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W 163 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTW 163 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEE
Confidence 9999999999999999885421100 233456788874 334455543322334689999999995444476 5 9999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCccee
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL 248 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v 248 (1011)
+|++...... .........+..+...+.|.|.++..+|+|.|+|.|.|..+.. .+..+.+.|...+...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~--------- 232 (475)
T 1iga_A 164 SESGQGVTAR-NFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTP--------- 232 (475)
T ss_pred cCCCcccceE-eCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCcccc---------
Confidence 9987432111 0000010122344555789999999999999999999988632 3444444442211100
Q ss_pred ecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEee
Q psy17146 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAE 328 (1011)
Q Consensus 249 ~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~ 328 (1011)
+.....|.+... ..+.+. . .......+.+|+.++|.|.+.
T Consensus 233 ---~~~~~~~~~~~~-~~p~v~-~-----------------------------------~~p~~~~~~~G~~v~L~C~~~ 272 (475)
T 1iga_A 233 ---SPSTPPTPSPSC-CHPRLS-L-----------------------------------HRPALEDLLLGSEANLTCTLT 272 (475)
T ss_pred ---cccccccCCCCC-CCcEEE-E-----------------------------------cCCChHHhccCCceEEEEEEE
Confidence 000000111000 000000 0 000112246777788888777
Q ss_pred cCCC--ccEEEEEECCeecCCC-------------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEE---EEec
Q psy17146 329 ANPS--HMKYRWYINDQPVPAA-------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD---VTYG 390 (1011)
Q Consensus 329 ~~p~--~~~i~W~k~g~~l~~~-------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~---V~~~ 390 (1011)
+.++ ++.+.| ++..+... .....|.|.++... |+|.|+|.|.|..|.......|. +..+
T Consensus 273 g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~ 349 (475)
T 1iga_A 273 GLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN-HGKTFTCTAAYPESKTPLTATLSKSGNTFR 349 (475)
T ss_pred cccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhc-cCCcEEEEEEcCCCCCceEEEeecCCCCCC
Confidence 6643 247788 33332210 12346999999987 99999999999988765545553 3567
Q ss_pred ceEeeCC-CceEecCCCcEEEEeecCCCCC--CceEEEeCCCceee----------c---cCC------cEEEEeeccCC
Q psy17146 391 PRFRARP-YSVQVDRGAGVNLLCDVDGNPA--PEITWIHEDSDKVV----------G---NSP------NLTLLMTSDDL 448 (1011)
Q Consensus 391 P~~~~~p-~~~~v~~G~~v~l~C~~~g~p~--p~v~W~k~~~~~~~----------~---~~~------~L~I~~v~~~d 448 (1011)
|.+...+ ....+.+|+.+.|.|.+.|.++ +.|+|+|+|..+.. . ..+ .|.|.....+|
T Consensus 350 P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~ 429 (475)
T 1iga_A 350 PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429 (475)
T ss_pred CeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcC
Confidence 8776544 3334788999999999988643 49999999854321 1 122 24455555678
Q ss_pred CeEEEEEEEEcCC
Q psy17146 449 AGRYYCKASVMGF 461 (1011)
Q Consensus 449 ~G~Y~C~a~n~~~ 461 (1011)
.|.|+|.|.|.+.
T Consensus 430 ~g~YtC~a~n~~l 442 (475)
T 1iga_A 430 GDTFSCMVGHEAL 442 (475)
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998643
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=306.57 Aligned_cols=371 Identities=15% Similarity=0.216 Sum_probs=226.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (457)
T 1hzh_H 5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR 84 (457)
T ss_dssp EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence 34677899999999999999874 45899998532 1100 0 0011246888877655677899999
Q ss_pred ecccCCCceEEEEEEeCCC------C--CcceeeeEEEEEEEcCC-CCCeee-cCCeeeecCCCcEEEEEEccCCCCC-c
Q psy17146 96 PVMLDDDARYQCQVSTGIL------G--EPAIRSRFATLTVLVPP-DPPRIV-QGDTLYTTEDREIELECISANGKPP-A 164 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~------~--~~~~~s~~~~l~V~~~p-~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~ 164 (1011)
+++.+|+|.|+|.+.+..+ + ........+.|+|...+ .+|.+. ..+...+.+|+.+.|.|.+.+..|. +
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 85 SLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp SCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCe
Confidence 9999999999999987532 0 00022344677777532 244443 3333446789999999995544475 8
Q ss_pred EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecC
Q psy17146 165 EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244 (1011)
Q Consensus 165 ~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~ 244 (1011)
.++|+|++..+... ...... ..+..+...+.|.|.++..+| |.|+|.|.|..+...... .+.+...+.
T Consensus 165 ~v~W~k~~~~~~~~-~~~~~~-~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~--~v~~~~~~~------- 232 (457)
T 1hzh_H 165 TVSWNSGALTSGVH-TFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK--KAEPKSCDK------- 232 (457)
T ss_dssp EEEETTTTBCTTEE-EEEEEE-CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEE--ECCCCCSCS-------
T ss_pred EEEEEeCCEeccce-EcCceE-CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeE--EecccCCCc-------
Confidence 99999998654321 111111 222344555789999999999 999999999877543222 222211110
Q ss_pred cceeecCceEEEEEEcccCC---CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCC-cccccCCc
Q psy17146 245 SNRLVEGTDVRLYCKAEANP---SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGS-NRLVEGTD 320 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~---~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~-~~v~~g~~ 320 (1011)
.+.|.+...+ ..+.+.-. .... ..+.+|+.
T Consensus 233 ----------~~~~~~~~~~~~~~~p~v~~~------------------------------------~p~~~~~~~~G~~ 266 (457)
T 1hzh_H 233 ----------THTCPPCPAPELLGGPSVFLF------------------------------------PPKPKDTLMISRT 266 (457)
T ss_dssp ----------SCSCCSCCCCCCSSSCEEEEE------------------------------------CCCHHHHHCTTSC
T ss_pred ----------ccccCCCCCccccCCceEEeE------------------------------------CcCchhhcccCCc
Confidence 0001000000 00000000 0011 12567888
Q ss_pred EEEEEEeecCCCc---cEEEEEECCeecCCC-------cCccEEEEee---cccc--cCCcEEEEEEEcCCccceeeEEE
Q psy17146 321 VRLYCKAEANPSH---MKYRWYINDQPVPAA-------ASATELYLTN---ITRH--QHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 321 v~l~C~~~~~p~~---~~i~W~k~g~~l~~~-------~~~~~L~I~~---~~~~--~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
++|.|.+.+.+++ +.+.|+|++..+... .....|.|.. +... .|+|.|+|.|.|..+.......+
T Consensus 267 v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 267 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred eEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence 8888888877542 488888888776532 1123344432 2233 14999999999876654433334
Q ss_pred E----EEecceEeeCCC-ceEecCCCcEEEEeecCCCCCC--ceEEEeCCCcee--------eccCCc------EEEEee
Q psy17146 386 D----VTYGPRFRARPY-SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV--------VGNSPN------LTLLMT 444 (1011)
Q Consensus 386 ~----V~~~P~~~~~p~-~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~~--------~~~~~~------L~I~~v 444 (1011)
. +..+|.+...+. ...+..|+ +.|.|.+.|.+++ .|+|+|+|..+. ....+. |.|...
T Consensus 347 ~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~ 425 (457)
T 1hzh_H 347 SKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS 425 (457)
T ss_dssp CCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred EcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChH
Confidence 3 355787765443 33445555 9999999886544 899999985432 122233 333334
Q ss_pred ccCCCeEEEEEEEEcCC
Q psy17146 445 SDDLAGRYYCKASVMGF 461 (1011)
Q Consensus 445 ~~~d~G~Y~C~a~n~~~ 461 (1011)
..+|+|.|+|.|.|.+.
T Consensus 426 ~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 426 RWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp HHHTTCCEEEEEECTTS
T ss_pred HccCCCeEEEEEEECCC
Confidence 44789999999999654
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=285.43 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=212.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCC------eeEEeeCCeecCC-------cccCCCCcceEEeecC---CCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGP-------HRNLSGFDRYAMIGSD---EEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~------~v~W~k~~~~l~~-------~~~~~~~~r~~i~~~~---~~~~~~L~ 93 (1011)
+...|.++.+..|++|+|.|.+.++.. .+.|+|++..... ...+....|+.+.... ..++++|+
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 455788999999999999999987432 4899999864321 1122334566665432 23557899
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|++.+... +..+..+.|+|...|.. ........+.+|+.+.+.|.+..++|.+.++|++++.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~---~~~~~~~~l~v~~~P~~--~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~ 157 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQ---GSRSVDIWLRVLAKPQN--TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 157 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSS---CEEEEEEEECCBBCCEE--EEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred ECcCChhhCEEEEEEEeeccC---cceeeeeeeeeccCCcc--eecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence 999999999999999865432 33556667776665532 2233345567788999999877899999999999998
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
.+...... .......+...+.|.|.+...+|+|.|+|.|.|..+....+..+.|.|.++|.+.+....
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~--------- 225 (313)
T 4fqp_A 158 GMPNTSQV---PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD--------- 225 (313)
T ss_dssp CEEEEEEE---ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCC---------
T ss_pred ccccccee---eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccccc---------
Confidence 88654433 222333455667899999999999999999999888776777788888777766544332
Q ss_pred EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 254 v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
...+.+|+.++|.|.+.++|.|
T Consensus 226 ----------------------------------------------------------~~~~~~g~~v~l~C~~~g~P~p 247 (313)
T 4fqp_A 226 ----------------------------------------------------------NNWYLGQNEATLTCDARSNPEP 247 (313)
T ss_dssp ----------------------------------------------------------SCEETTCCCEEEEEEEEEESCC
T ss_pred ----------------------------------------------------------ceeecCCCeEEEEEEecCCCCC
Confidence 2334566777888888887776
Q ss_pred cEEEEEECCeecCCC--cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 334 MKYRWYINDQPVPAA--ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~--~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
..|.|+|+|..+... ..+..|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 248 ~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 248 TGYNWSTTMGPLPPFAVAQGAQLLIRPVDKP-INTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp CEEEEEETTBSCCTTEEEETTEEEECCCSSC-CEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred cEEEEEECCEECCCceEEeCCEEEECcCChh-hCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 678888888877653 34568999999998 9999999999999999999999998765
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=294.17 Aligned_cols=325 Identities=22% Similarity=0.270 Sum_probs=236.5
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC--CCce-----------ee---ccCCcEEEEeeccCCCeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDK-----------VV---GNSPNLTLLMTSDDLAGRYY 453 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~--~~~~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 453 (1011)
+|.|.. +.+..+.+|+.+.|.|.+.|.|.+.|+|+|+ +..+ .. .....|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 366665 5567888999999999999999999999999 4221 11 12457999999999999999
Q ss_pred EEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCC
Q psy17146 454 CKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533 (1011)
Q Consensus 454 C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~ 533 (1011)
|.|.|. .|..
T Consensus 80 C~a~n~----------------------------------------------------------------------~g~~ 89 (389)
T 2jll_A 80 CEAASR----------------------------------------------------------------------IGGH 89 (389)
T ss_dssp EEEECS----------------------------------------------------------------------SCEE
T ss_pred EEEEeC----------------------------------------------------------------------CCCc
Confidence 999953 3444
Q ss_pred cccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCC
Q psy17146 534 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 534 ~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d 602 (1011)
+..+.|.|..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ....|.|.++..+|
T Consensus 90 ~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d 169 (389)
T 2jll_A 90 QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169 (389)
T ss_dssp EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTS
T ss_pred ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhh
Confidence 4556677778888887777778999999999999999999999999998543221 23579999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec--CCC---CeEEEEECCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI--PPP---EKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~--p~p---~~v~W~~~g~~l~~~~~~~ 677 (1011)
+|.|+|.|.| ..|..+..+.|.|..+|............+..+.|.|..... ..| ..+.|.+++....
T Consensus 170 ~G~Y~C~a~N-~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~------ 242 (389)
T 2jll_A 170 FGRYNCTATN-HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW------ 242 (389)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC------
T ss_pred CEEEEEEEEc-CCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc------
Confidence 9999999999 577778888888876664221111223346788999974221 112 1467877654211
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeee
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQR 757 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 757 (1011)
..+.. ......|.|.++...+.|.|+|.|.|..|....+..+.+...
T Consensus 243 ~~~~~----~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~----------------------------- 289 (389)
T 2jll_A 243 KIVRS----HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL----------------------------- 289 (389)
T ss_dssp EEEEC----STTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECC-----------------------------
T ss_pred EEeec----cCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEec-----------------------------
Confidence 11111 223468999999999999999999999996543332322110
Q ss_pred ccCCC-CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c
Q psy17146 758 KVKKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A 811 (1011)
Q Consensus 758 ~~~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A 811 (1011)
...+| +| .+.....+.+++.|+| ++.+++++|++|.|+++.... .|++.|+| |
T Consensus 290 ~~~~p~~p-~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A 368 (389)
T 2jll_A 290 PVREPSPP-SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITA 368 (389)
T ss_dssp CCCCCCCC-CEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCCCCC-ccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEE
Confidence 11234 44 4566667888999999 788899999999999987322 78889999 5
Q ss_pred ---CCCCCCCcccccccc
Q psy17146 812 ---GHDSETGSESVHTRI 826 (1011)
Q Consensus 812 ---~G~g~~ss~~~~t~~ 826 (1011)
.|.|++|...++|.+
T Consensus 369 ~n~~G~s~~s~~~~~T~~ 386 (389)
T 2jll_A 369 ANRLGYSEPTVYEFSMPP 386 (389)
T ss_dssp EC-CCBCCCEEEEEECCC
T ss_pred EcCCcCCCceeeEecCCC
Confidence 899999866666643
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=282.43 Aligned_cols=261 Identities=21% Similarity=0.354 Sum_probs=206.5
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC-CCcee------e---ccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKV------V---GNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-~~~~~------~---~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+|.+...+.+..+.+|+.++|.|.+.|.|. .+.|+++ +.... . +....|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 3678888999999999999999999999875 9999994 43221 1 1124799999999999999999997
Q ss_pred cCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEE
Q psy17146 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538 (1011)
Q Consensus 459 ~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~ 538 (1011)
..+...+..+ .
T Consensus 82 ~~g~~~~~~~---------------------------------------------------------------------~ 92 (291)
T 2wim_A 82 AKGQTQEATV---------------------------------------------------------------------V 92 (291)
T ss_dssp SSSCEEEEEE---------------------------------------------------------------------E
T ss_pred ccCceEEEEE---------------------------------------------------------------------E
Confidence 5433323333 3
Q ss_pred EEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 539 l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|.|
T Consensus 93 l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 172 (291)
T 2wim_A 93 LEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172 (291)
T ss_dssp EEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEE
T ss_pred EEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEE
Confidence 345556666667777889999999999999999999999999986543 234678999999999999999999
Q ss_pred EecCCC-ceeeEEEEEEcCCCeeecCC---ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 611 SVMGFP-EVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 611 ~n~~~~-~~s~~~~l~V~~~P~i~~~~---~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.|...+ .....+.+.|..+|.+.... ...+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+..
T Consensus 173 ~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~--~~~~~~~~---- 245 (291)
T 2wim_A 173 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEE--NEKYILKG---- 245 (291)
T ss_dssp EETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCC-EEEEEETTEECCC--TTTEEECS----
T ss_pred EECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCC-eEEEEECCEECcC--CccEEEcC----
Confidence 994323 34567788899999887543 4467899999999999999999 8999999999873 44555433
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|.+++++.|.|.+.
T Consensus 246 --~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 246 --SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp --TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred --CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 2468999999999999999999999999999999998654
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=279.05 Aligned_cols=277 Identities=18% Similarity=0.300 Sum_probs=206.8
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCC--CCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
+++.|.+.|.++.+.+|++++|.|.+.+. .+.+.|+| ++..+.. ...|+.+... .....+|.|.+++.+|+
T Consensus 1 r~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~D~ 74 (291)
T 1qz1_A 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-----NQQRISVVWN-DDDSSTLTIYNANIDDA 74 (291)
T ss_dssp -CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-----SCSSEEEEEE-ETTEEEEEECSCCGGGC
T ss_pred CCcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-----CCceEEEEEc-CCCeEEEEEecCCCCCC
Confidence 46789999999999999999999999984 47999999 6655532 2245555432 23567899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+..+ ...+..+.|.|..++. ....+....+.+|+.+.|.|. +.+.|.+.+.|+|++..+.......
T Consensus 75 G~Y~C~~~n~~g---~~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~ 148 (291)
T 1qz1_A 75 GIYKCVVTAEDG---TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVR 148 (291)
T ss_dssp EEEEEEEECTTS---CEEEEEEEEEEECCSE--EEECCSSEEEETTSCEEECCE-EECSSCCEEEEEETTSCSSTTCCTT
T ss_pred EEEEEEEEcCCC---CeeEEEEEEEeecccc--ccCCCCcccccCCCeEEEEEE-eccCCCCEEEEEECCEEcccCCCce
Confidence 999999998643 2345667777775432 233445667889999999999 6688999999999998775422211
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEccc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~ 262 (1011)
.....+ +.|.|.+++.+|+|.|+|.|.|..+.......+.|.|..+|.+......
T Consensus 149 ~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~------------------ 203 (291)
T 1qz1_A 149 FIVLSN-------NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSI------------------ 203 (291)
T ss_dssp EEECTT-------SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE------------------
T ss_pred EEEccC-------CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccc------------------
Confidence 112222 3799999999999999999999876555566777777766654321110
Q ss_pred CCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECC
Q psy17146 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g 342 (1011)
....+.+|+.++|.|.+.+.|.+ .+.|+++|
T Consensus 204 ------------------------------------------------~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~g 234 (291)
T 1qz1_A 204 ------------------------------------------------VNATANLGQSVTLVCDADGFPEP-TMSWTKDG 234 (291)
T ss_dssp ------------------------------------------------EEEETTSCCCEEEEEEEEEESCC-EEEEEETT
T ss_pred ------------------------------------------------cccccccCceEEEEEEEEEeCCC-cEEEEECC
Confidence 12346677888888888887776 78888888
Q ss_pred eecCCCc----------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe
Q psy17146 343 QPVPAAA----------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 343 ~~l~~~~----------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
..+.... ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 235 EPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EECCCC--CCSSEEECTTSCEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EECcCCCCCCcceEEcCCCcEEEEEecChh-cCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 8776532 2468999999998 99999999999999998999998864
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=288.28 Aligned_cols=282 Identities=25% Similarity=0.349 Sum_probs=208.8
Q ss_pred CCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCCc-----------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGPH-----------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~~-----------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
|.++++.+|++|+|.|.+.+.. +.+.|+|++...... ......+|+.+. ....+.++|+|.+++.+
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~~ 84 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFK-NYSLNDATITLHNIGFS 84 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEES-CCSSSBCCEEECSCCGG
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEee-ccCCCceEEEEccCCHH
Confidence 3468999999999999987533 379999976432110 011112454443 22345678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeecee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR 180 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~ 180 (1011)
|+|.|+|++.+... +..+..+.+.+...+..+.+..+..+...+|+.+.|.|.+..|+|.+.++|+|++..+.....
T Consensus 85 D~G~Y~C~a~n~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~ 161 (308)
T 4fom_A 85 DSGKYICKAVTFPL---GNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT 161 (308)
T ss_dssp GCEEEEEEEEETTT---EEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE
T ss_pred HCEEEEEEEeeCCC---cceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc
Confidence 99999999988532 345677888888877766666666777778999999998778999999999999988765332
Q ss_pred EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 181 VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
. .........+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|..+|.+.+....
T Consensus 162 ~-----~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~---------------- 220 (308)
T 4fom_A 162 S-----FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYD---------------- 220 (308)
T ss_dssp E-----CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCC----------------
T ss_pred e-----eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccc----------------
Confidence 2 1223344557899999999999999999999988876777778777776655332221
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
...+.+|+.++|.|.+.+.|.|..+.|+|
T Consensus 221 ---------------------------------------------------~~~~~~g~~v~l~C~~~g~P~p~~v~W~k 249 (308)
T 4fom_A 221 ---------------------------------------------------GNWFVGRKGVNLKCNADANPPPFKSVWSR 249 (308)
T ss_dssp ---------------------------------------------------SCEETTCCSCEEECCEEEESCEEEEECCB
T ss_pred ---------------------------------------------------eeeeeccccEEEEEEEecCCCCcEEEEEE
Confidence 23345667777777777777666688888
Q ss_pred CCeecCCC---cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 341 NDQPVPAA---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 341 ~g~~l~~~---~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
++..+... .....|.|.+++.+ |+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 250 ~~~~~~~~~~~~~~~~l~i~~v~~~-d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 250 LDGQWPDGLLASDNTLHFVHPLTFN-YSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp SSSCCCSSCBCSTTEEECCSCCCSC-CCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred CCeECCCcEEEcCCeEEEECCCChh-hCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 87766543 23455667888887 99999999999999999999999999885
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=314.75 Aligned_cols=356 Identities=15% Similarity=0.223 Sum_probs=225.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..+..+.+.+|++|+|.|.+.+. .+.+.|+|++. .+. .. ......+|+.+..+...+.++|+|.
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS 83 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence 35677899999999999999874 45899999742 210 00 0011235787765544456789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.. ...+..+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 84 ~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~ 159 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEV----PYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 159 (434)
T ss_dssp SBCGGGCSEECCCCSSSS----CCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTT
T ss_pred CCChHHCEEEEEEEEccc----cccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCC
Confidence 999999999999998742 12334467788642 2334333 23333457899999999955445876 99999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE-----E---e--CCceEEEe
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-----K---Y--APKVQVSV 242 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v-----~---~--~P~~~~~~ 242 (1011)
..+... .. ...... ..+...+.|.|.++..+| |.|+|.|.|..+.......+.+.. . . .|.+.+..
T Consensus 160 ~~~~~~-~~-~~~~~~-~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~ 235 (434)
T 1igy_B 160 LSSGVH-TF-PAVLQS-DLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFP 235 (434)
T ss_dssp BCSSEE-EC-CCEECS-SCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred cCCCeE-ec-CceecC-CcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence 753111 00 001112 344455789999999889 999999999988754333332210 0 0 02222211
Q ss_pred cCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEE
Q psy17146 243 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVR 322 (1011)
Q Consensus 243 ~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~ 322 (1011)
+.... .+.+|+.++
T Consensus 236 p~~~~------------------------------------------------------------------~v~~G~~~~ 249 (434)
T 1igy_B 236 PKPKD------------------------------------------------------------------TLLITVTPK 249 (434)
T ss_dssp CCHHH------------------------------------------------------------------HHSTTSCCE
T ss_pred CChHH------------------------------------------------------------------hcccCCCcE
Confidence 11011 145555555
Q ss_pred EEEEeecCC---CccEEEEEECCeecCCC-------------cCccEEEEeecccccCCcEEEEEEEcCCcccee--eEE
Q psy17146 323 LYCKAEANP---SHMKYRWYINDQPVPAA-------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSED--SET 384 (1011)
Q Consensus 323 l~C~~~~~p---~~~~i~W~k~g~~l~~~-------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~--s~~ 384 (1011)
|.|.+.+.+ .+..+.|+|++..+... .....|.|.++..+ |+|.|+|.|.|..|.... .+.
T Consensus 250 L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~~~~~~~~~v~ 328 (434)
T 1igy_B 250 VTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWL-NGKEFKCRVNSAAFPAPIEKTIS 328 (434)
T ss_dssp EEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHH-HTCCCBCCBCCSSCSSCCCCCCC
T ss_pred EEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHcc-CCCcEEEEEECCCCCCceeEEEe
Confidence 555555542 12356666665544321 12357899999887 999999999999886533 332
Q ss_pred E--EEEecceEeeCCCceEecCCCcEEEEeecCCC-CC-CceEEEeCCCceee--------ccCC------cEEEEeecc
Q psy17146 385 L--DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PEITWIHEDSDKVV--------GNSP------NLTLLMTSD 446 (1011)
Q Consensus 385 l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p~v~W~k~~~~~~~--------~~~~------~L~I~~v~~ 446 (1011)
+ .+..+|.+...+......+|+.++|.|.+.|. |+ +.|+|+|++..+.. ...+ .|.|.....
T Consensus 329 ~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 408 (434)
T 1igy_B 329 KTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNW 408 (434)
T ss_dssp CCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHH
T ss_pred ccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhc
Confidence 2 44567777655444334567889999999885 43 38999999865421 1222 244555556
Q ss_pred CCCeEEEEEEEEcCCc
Q psy17146 447 DLAGRYYCKASVMGFP 462 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~ 462 (1011)
+|+|.|+|.|.|.+..
T Consensus 409 ~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 409 EAGNTFTCSVLHEGLH 424 (434)
T ss_dssp HTTCCEEEEEEETTSG
T ss_pred cCCCEEEEEEEcCCCC
Confidence 7899999999996543
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=305.43 Aligned_cols=350 Identities=14% Similarity=0.153 Sum_probs=224.5
Q ss_pred eeCCcccccCCcEEEEEEeecCC-CccEEEEEEC--CeecC------------------CC---------cCccEEEEee
Q psy17146 309 VIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIN--DQPVP------------------AA---------ASATELYLTN 358 (1011)
Q Consensus 309 ~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~--g~~l~------------------~~---------~~~~~L~I~~ 358 (1011)
......+.+|++++|.|.+.+.+ ....+.|||+ +..+. .. .....|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 34567899999999999998874 2348999985 22210 00 1135799999
Q ss_pred cccccCCcEEEEEEEcCCcc---ceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCC
Q psy17146 359 ITRHQHDSIVKCEVHNDVGK---SEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDS 429 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~ 429 (1011)
++.+ |+|.|+|.|.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus 86 v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 86 LKSE-DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CCGG-GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCHH-HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 9998 999999999997654 23456777763 4554432222345899999999999885 776 999999986
Q ss_pred cee-------ec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeE
Q psy17146 430 DKV-------VG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 497 (1011)
Q Consensus 430 ~~~-------~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~ 497 (1011)
... .. ....|.|.++..+| |.|+|.|.|..+.. .....+.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~---------------------- 220 (444)
T 1igt_B 165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGP---------------------- 220 (444)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCC----------------------
T ss_pred CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCC----------------------
Confidence 421 01 12347788888889 99999999965432 11111111000
Q ss_pred eeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEEEEecCC---
Q psy17146 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLCDVDGNP--- 572 (1011)
Q Consensus 498 ~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C~~~g~p--- 572 (1011)
+.|+|.+. . .. ...+..+|.+ ...|.... +.+|+.++|.|.+.|.+
T Consensus 221 ------------------------~~~~~~~~--~--~~-~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p 271 (444)
T 1igt_B 221 ------------------------TIKPCPPC--K--CP-APNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDD 271 (444)
T ss_dssp ------------------------SCCCCCCC--S--CC-CSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTC
T ss_pred ------------------------CcccCCcc--c--cC-CcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCC
Confidence 00000000 0 00 0001123443 33333333 58899999999999984
Q ss_pred -CCeEEEEecCCceee--------------cCCCcEEEeecCCCCCEEEEEEEEecCCCce--eeEEEE--EEcCCCeee
Q psy17146 573 -APEITWIHEDSDKVV--------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV--GAEATV--YLKGRPTII 633 (1011)
Q Consensus 573 -~p~v~W~k~~~~~~~--------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--s~~~~l--~V~~~P~i~ 633 (1011)
.+.++|+|++..+.. ...+.|+|.++..+|+|.|+|.|.|. .+.. ...+.+ .+..+|.+.
T Consensus 272 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~~P~v~ 350 (444)
T 1igt_B 272 PDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVY 350 (444)
T ss_dssp CCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT-TCSSCEEEEEECCCCCCBCCEEE
T ss_pred CCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcC-CCCCceEEEEeccCCCCCCCEEE
Confidence 359999999854321 11247999999999999999999994 3333 334433 456788876
Q ss_pred c-C-CceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 634 S-H-RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 634 ~-~-~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
. + ....+..| .++|.|.+.|. |.++.|+|+|||..+............+ ......+.|.|.....+|.|.|+|.|
T Consensus 351 ~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~d~g~YtC~a 428 (444)
T 1igt_B 351 VLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSD-GSYFMYSKLRVEKKNWVERNSYSCSV 428 (444)
T ss_dssp EECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTT-SCEEEEEEEEEEHHHHHTCCCEEEEE
T ss_pred EeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCC-CCEEEEEEEEEChHHhcCCCeEEEEE
Confidence 2 2 22233444 59999999995 6666899999999884211111111111 00012456788887788899999999
Q ss_pred EcCCC
Q psy17146 711 SNPYG 715 (1011)
Q Consensus 711 ~N~~G 715 (1011)
.|..-
T Consensus 429 ~n~~l 433 (444)
T 1igt_B 429 VHEGL 433 (444)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 99864
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=277.02 Aligned_cols=279 Identities=23% Similarity=0.374 Sum_probs=196.3
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-CCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-DDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~D~ 102 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+. ..|+.+.........+|.|.+++. +|+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~-------~~~~~~~~~~~~~~~~L~i~~~~~~~D~ 76 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-------SQRFETIEFDESAGAVLRIQPLRTPRDE 76 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC--------------CTTEEEEEETTTTEEEEEECSCCTTTTC
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC-------CCceEEEEecCCCceEEEEecccccCCC
Confidence 45799999999999999999999999987 667999999997762 235555443333457899999998 999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+.. +..+..+.|.|...+. .|.+. .+....+.+|+.+.|.|. +.|.|.+.+.|+|++..+..
T Consensus 77 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~k~~~~~~~ 151 (304)
T 2yd9_A 77 NVYECVAQNSV----GEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDP 151 (304)
T ss_dssp SEEEEEEECSS----CEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCE-EECSSCCEEEEEETTEECCG
T ss_pred eEEEEEEECCC----CeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEE-CccCCCCeEEEEECCEECcC
Confidence 99999999863 3356778899987532 24444 344667889999999999 67899999999999887754
Q ss_pred cee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE-EEEEEEEE-eCCceEEEecCcceeecCceE
Q psy17146 178 NVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV-ARLKLLVK-YAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s-~~v~v~v~-~~P~~~~~~~~~~~v~~g~~v 254 (1011)
... .......+ +.|.|.+++.+|+|.|+|.|.|..|..... ..+.|.+. .+|.+... +
T Consensus 152 ~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~-~----------- 212 (304)
T 2yd9_A 152 SASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-P----------- 212 (304)
T ss_dssp GGGTTSEEECTT-------SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC-C-----------
T ss_pred CCCcceEEeCCC-------eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec-C-----------
Confidence 321 11111222 279999999999999999999988755322 44444432 22222111 1
Q ss_pred EEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCcc
Q psy17146 255 RLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 334 (1011)
Q Consensus 255 ~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~ 334 (1011)
....+.+|+.++|.|.+.+.|.+
T Consensus 213 --------------------------------------------------------~~~~v~~G~~v~l~C~~~g~p~p- 235 (304)
T 2yd9_A 213 --------------------------------------------------------MSHEIMPGGNVNITCVAVGSPMP- 235 (304)
T ss_dssp --------------------------------------------------------CCBCCCTTCCEEEEEEEEEESCC-
T ss_pred --------------------------------------------------------CceEEcCCCeEEEEEEEeeeCCC-
Confidence 22456788888888888888876
Q ss_pred EEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEe
Q psy17146 335 KYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR 394 (1011)
Q Consensus 335 ~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~ 394 (1011)
.+.|+++|..+.... ....|.|.++ + |+|.|+|.|.|..|..+.++.|.|..++.+.
T Consensus 236 ~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 296 (304)
T 2yd9_A 236 YVKWMQGAEDLTPEDDMPVGRNVLELTDV--K-DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296 (304)
T ss_dssp EEEEEETTEECSCSSSCCBSEEEEEECSC--C-SCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred EEEEEECCEECCCcccccCCcEEEEEccc--c-cCEEEEEEEEeCCCcEEEEEEEEEecCcccc
Confidence 899999998886542 2234666665 4 8999999999999999999999998877644
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=274.71 Aligned_cols=277 Identities=15% Similarity=0.262 Sum_probs=201.1
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|.+.|.++.+.+|++|+|.|.+.+....+.|++ ++..+. ...|+.+..++ ...+|.|.+++.+|+|.
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~ 74 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII------STQRVVVQKEG--VRSRLTIYNANIEDAGI 74 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCC------CBTTEEEEEET--TEEEEEECSCCGGGCEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCCceEEECCCCcCcc------CCCcEEEecCC--CEEEEEEccCCcccCEE
Confidence 4688999999999999999999999998666999999 554432 33566665433 45689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+..+. ..+..+.|.|..++.. ........+.+|+.+.|.|. +.+.|.+.+.|++++..+.........
T Consensus 75 Y~C~~~n~~g~---~~~~~~~l~v~~~~~~--~~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~ 148 (291)
T 2wim_A 75 YRCQATDAKGQ---TQEATVVLEIYQKLTF--REVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFA 148 (291)
T ss_dssp EEEEEECSSSC---EEEEEEEEEEECCCBC--CSCCCSEEEETTSCEEECCC-CBCSSCCEEEEECC----CBCCCSSEE
T ss_pred EEEEEecccCc---eEEEEEEEEecCCcce--EeCCCChhhcCCCCEEEEEE-EccCCCCEEEEEECCccccccCCceEE
Confidence 99999986432 2355677777765532 22334567889999999999 678999999999998877542111111
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~ 264 (1011)
...+ +.|.|.+++.+|+|.|+|.+.|..+.......+.+.+..+|.+......
T Consensus 149 ~~~~-------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~-------------------- 201 (291)
T 2wim_A 149 MLAN-------NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-------------------- 201 (291)
T ss_dssp ECTT-------SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSE--------------------
T ss_pred EccC-------CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCccc--------------------
Confidence 1222 3699999999999999999999887665566777777777654321110
Q ss_pred CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCee
Q psy17146 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 344 (1011)
Q Consensus 265 ~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~ 344 (1011)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..
T Consensus 202 ----------------------------------------------~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~ 234 (291)
T 2wim_A 202 ----------------------------------------------FNATAERGEEMTFSCRASGSPEP-AISWFRNGKL 234 (291)
T ss_dssp ----------------------------------------------EECCSSSCCEEEEECBCCCBSCC-EEEEEETTEE
T ss_pred ----------------------------------------------ccceecCCCeEEEEEEeecCCCC-eEEEEECCEE
Confidence 01245567777777777776665 6777777777
Q ss_pred cCCC------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 345 VPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 345 l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..++
T Consensus 235 ~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 235 IEENEKYILKGSNTELTVRNIINS-DGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp CCCTTTEEECSTTCEEEEESCCST-TCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred CcCCccEEEcCCccEEEEeeCCcc-cCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 6543 23568999999998 9999999999999999999999998765
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=275.52 Aligned_cols=258 Identities=18% Similarity=0.223 Sum_probs=199.3
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce--eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceee
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK--VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 466 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 466 (1011)
.+|.|...+.+..+.+|++++|.|.+.+ .+.|+|++... ....+..|.|.+++.+|+|.|+|.|.| + . +.
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-g-~--~~ 82 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN-G-L--TS 82 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS-S-C--EE
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC-C-c--cE
Confidence 4688888888999999999999999987 89999999766 334458899999999999999999986 1 1 33
Q ss_pred EEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecce
Q psy17146 467 EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPR 546 (1011)
Q Consensus 467 ~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~ 546 (1011)
.+.| .|..+|.
T Consensus 83 ~~~l---------------------------------------------------------------------~V~~~~~ 93 (290)
T 2o26_X 83 SIYV---------------------------------------------------------------------FVRDPAK 93 (290)
T ss_dssp EEEE---------------------------------------------------------------------EEECSSC
T ss_pred EEEE---------------------------------------------------------------------EEeCCCc
Confidence 3333 4444454
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCC-CeEEEE-ecCCce------eecCCCcEEEeecCCCCCE-EEEEEEEecCCCc
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWI-HEDSDK------VVGNSPNLTLLMTSDDLAG-RYYCKASVMGFPE 617 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~-k~~~~~------~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~ 617 (1011)
+...+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+ .....+.|.|.++..+|+| .|+|.|.|.+...
T Consensus 94 ~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~ 172 (290)
T 2o26_X 94 LFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL 172 (290)
T ss_dssp CBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEE
T ss_pred ccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceE
Confidence 445556778889999999999996 77 899995 565443 2344578999999999999 9999999953223
Q ss_pred eeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEe----cccCCCCeEEecCCcCcc
Q psy17146 618 VGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----GVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 618 ~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l----~~~~~~~~~~~~~~~~~~ 688 (1011)
.+..+.|.|. .+|.|. .+....+.+|+.++|.|.+.|.|.|..++|+++|..+ ..... ..+... ....
T Consensus 173 ~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 249 (290)
T 2o26_X 173 HSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN--SWHRGD-FNYE 249 (290)
T ss_dssp ECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECC--EEEEET-TEEE
T ss_pred EeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccc--ccccCc-eeeE
Confidence 4556777776 788886 4456689999999999999999999449999999874 32111 111110 0122
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|..+..+.|.|.+
T Consensus 250 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 357999999999999999999999999999999998854
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=274.29 Aligned_cols=255 Identities=17% Similarity=0.184 Sum_probs=194.6
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-----ceEEEeCCCcee---------------------------eccCCcEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKV---------------------------VGNSPNLT 440 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-----~v~W~k~~~~~~---------------------------~~~~~~L~ 440 (1011)
+...|.++.+..|++++|.|.+.+.+.+ .+.|+|++.... .....+|.
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 3456778889999999999999877765 489999874310 01235699
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.+.+...+..+..+.|.+.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~----------------------------------------------- 115 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL----------------------------------------------- 115 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCB-----------------------------------------------
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeec-----------------------------------------------
Confidence 999999999999999976544444444444433
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec------CC---
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG------NS--- 590 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~------~~--- 590 (1011)
.+|.+...+....+..|+.+.+.|.+ .+.|.+.+.|++++..+... .+
T Consensus 116 ----------------------~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~ 173 (313)
T 4fqp_A 116 ----------------------AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV 173 (313)
T ss_dssp ----------------------BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCE
T ss_pred ----------------------cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccccc
Confidence 33444444444556678888999987 47899999999998765321 11
Q ss_pred ---CcEEEeecCCCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEE
Q psy17146 591 ---PNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664 (1011)
Q Consensus 591 ---~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~ 664 (1011)
..|.|..+..+|+|.|+|.|.|. +....+..+.|.|..+|.+. ......+..|+.++|.|.+.|.|.|..|+|+
T Consensus 174 ~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~ 253 (313)
T 4fqp_A 174 TVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS 253 (313)
T ss_dssp EEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred ccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEE
Confidence 35889999999999999999994 34456677888888899875 3345567788999999999999999669999
Q ss_pred ECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|+|.++... ... . .++|.|.++..+|+|.|+|.|.|.+|+.+.++.|.|.+.
T Consensus 254 ~~~~~l~~~----~~~-~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 254 TTMGPLPPF----AVA-Q-------GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp ETTBSCCTT----EEE-E-------TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred ECCEECCCc----eEE-e-------CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 999987521 111 1 258999999999999999999999999999999999643
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=294.08 Aligned_cols=350 Identities=17% Similarity=0.215 Sum_probs=222.7
Q ss_pred eCCcccccCCcEEEEEEeecCC-CccEEEEEEC--Cee---c------------C---CC---------cCccEEEEeec
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIN--DQP---V------------P---AA---------ASATELYLTNI 359 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~--g~~---l------------~---~~---------~~~~~L~I~~~ 359 (1011)
.....+.+|+.++|.|.+.+.+ ....+.|||+ |.. + . .. .....|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence 4567889999999999999876 2348999984 221 1 0 00 11247999999
Q ss_pred ccccCCcEEEEEEEcCCc------------cceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CC-Cc
Q psy17146 360 TRHQHDSIVKCEVHNDVG------------KSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PE 421 (1011)
Q Consensus 360 ~~~~d~G~Y~C~a~n~~g------------~~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p~ 421 (1011)
+.+ |+|.|+|.|.|..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |. +.
T Consensus 87 ~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 165 (457)
T 1hzh_H 87 RSA-DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (457)
T ss_dssp CGG-GCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred Ccc-cCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence 998 99999999999876 223556788865 5665544434457899999999999887 64 79
Q ss_pred eEEEeCCCce-------eeccCC------cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccC
Q psy17146 422 ITWIHEDSDK-------VVGNSP------NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP 488 (1011)
Q Consensus 422 v~W~k~~~~~-------~~~~~~------~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~ 488 (1011)
|.|+|++... .....+ .|.|.++..+| |.|+|.|.|.++.. .....+.+...+.
T Consensus 166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~----------- 232 (457)
T 1hzh_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDK----------- 232 (457)
T ss_dssp EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCS-----------
T ss_pred EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCc-----------
Confidence 9999998531 111222 58888899999 99999999954321 1122222211110
Q ss_pred CCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEE
Q psy17146 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLC 566 (1011)
Q Consensus 489 g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C 566 (1011)
.+.|.+... + .+..+|.+ ...|.... +.+|+.++|.|
T Consensus 233 ----~~~~~~~~~--~-----------------------------------~~~~~p~v~~~~p~~~~~~~~G~~v~L~C 271 (457)
T 1hzh_H 233 ----THTCPPCPA--P-----------------------------------ELLGGPSVFLFPPKPKDTLMISRTPEVTC 271 (457)
T ss_dssp ----SCSCCSCCC--C-----------------------------------CCSSSCEEEEECCCHHHHHCTTSCCCEEE
T ss_pred ----ccccCCCCC--c-----------------------------------cccCCceEEeECcCchhhcccCCceEEEE
Confidence 000100000 0 01123333 33333322 67899999999
Q ss_pred EEecCCCC----eEEEEecCCcee--------ecCCCcEEEeec---CCCC---CEEEEEEEEecCCCceeeEEEE----
Q psy17146 567 DVDGNPAP----EITWIHEDSDKV--------VGNSPNLTLLMT---SDDL---AGRYYCKASVMGFPEVGAEATV---- 624 (1011)
Q Consensus 567 ~~~g~p~p----~v~W~k~~~~~~--------~~~~~~L~I~~v---~~~d---~G~Y~C~a~n~~~~~~s~~~~l---- 624 (1011)
.+.|.|++ .++|+|++..+. ...++.|.|..+ ...| +|.|+|.|.|.+. .......+
T Consensus 272 ~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~-~~~~~~~v~~~~ 350 (457)
T 1hzh_H 272 VVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL-PAPIEKTISKAK 350 (457)
T ss_dssp EEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTS-SSCEEEEECCCC
T ss_pred EEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCC-CCcceEEEEccc
Confidence 99998654 999999985532 234566666643 3455 9999999998432 22233233
Q ss_pred EEcCCCeeec--CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 625 YLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 625 ~V~~~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.+..+|.+.. +....+..|+ ++|.|.+.|.++ +..|+|+|||..+.......+....+ ......+.|.|.....+
T Consensus 351 ~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~ 428 (457)
T 1hzh_H 351 GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSKLTVDKSRWQ 428 (457)
T ss_dssp CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTT-SCEEEEEEEEEEHHHHH
T ss_pred CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCC-CCEEEEEEEEEChHHcc
Confidence 3467787762 2333344555 999999999744 34899999999986321111111111 00012356777777778
Q ss_pred CCEEEEEEEEcCCCCe
Q psy17146 702 HFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~ 717 (1011)
|.|.|+|.|.|.....
T Consensus 429 ~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 429 QGNVFSCSVMHEALHN 444 (457)
T ss_dssp TTCCEEEEEECTTSGG
T ss_pred CCCeEEEEEEECCCCC
Confidence 8999999999987543
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=283.54 Aligned_cols=350 Identities=17% Similarity=0.214 Sum_probs=227.9
Q ss_pred eCCcccccCCcEEEEEEeecCC-CccEEEEEECC--eecC------------------CC---------cCccEEEEeec
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QPVP------------------AA---------ASATELYLTNI 359 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~l~------------------~~---------~~~~~L~I~~~ 359 (1011)
.....+.+|++++|.|.+.+.+ ....+.|||+. ..+. .. .....|.|.++
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 87 (475)
T 1iga_A 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (475)
T ss_pred CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence 3567889999999999998764 23489999852 2110 00 12247999999
Q ss_pred ccccCCcEEEEEEEcCCcc------ceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CC-C-ceEEEe
Q psy17146 360 TRHQHDSIVKCEVHNDVGK------SEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-P-EITWIH 426 (1011)
Q Consensus 360 ~~~~d~G~Y~C~a~n~~g~------~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p-~v~W~k 426 (1011)
+.+ |+|.|+|.+.|..|. ....+.|.|.. +|.+...+. ..+.+|+.+.|.|.+.|. |. + .|.|++
T Consensus 88 ~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~ 165 (475)
T 1iga_A 88 RPE-DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSE 165 (475)
T ss_pred Chh-hCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEEcC
Confidence 998 999999999998762 23456788874 455544332 223789999999999887 65 5 999999
Q ss_pred CCCcee-------e-ccC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeE
Q psy17146 427 EDSDKV-------V-GNS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA 492 (1011)
Q Consensus 427 ~~~~~~-------~-~~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~ 492 (1011)
++.... . ... ..|.|..+..+|+|.|+|.|.|..+...+..+.+.|...+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~-------------~ 232 (475)
T 1iga_A 166 SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPT-------------P 232 (475)
T ss_pred CCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccc-------------c
Confidence 874311 1 111 236777778899999999999976543333444333211110 0
Q ss_pred EEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEEEcCCCcEEEEEEEecC
Q psy17146 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGN 571 (1011)
Q Consensus 493 ~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~v~~G~~~~l~C~~~g~ 571 (1011)
...|... . ...+ .+|.+ ...|....+.+|+.++|.|.+.|.
T Consensus 233 ~~~~~~~--------------------------------~-----~~~~-~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~ 274 (475)
T 1iga_A 233 SPSTPPT--------------------------------P-----SPSC-CHPRLSLHRPALEDLLLGSEANLTCTLTGL 274 (475)
T ss_pred ccccccc--------------------------------C-----CCCC-CCcEEEEcCCChHHhccCCceEEEEEEEcc
Confidence 0011000 0 0001 23333 334444446899999999999988
Q ss_pred CC---CeEEEEecCCcee--------ec------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE---EcCCCe
Q psy17146 572 PA---PEITWIHEDSDKV--------VG------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY---LKGRPT 631 (1011)
Q Consensus 572 p~---p~v~W~k~~~~~~--------~~------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~---V~~~P~ 631 (1011)
++ +.++| +++ ... .. ..+.|.|.++..+|+|.|+|.|.|. .+.......|. +..+|.
T Consensus 275 ~p~~~~~i~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~P~ 351 (475)
T 1iga_A 275 RDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP-ESKTPLTATLSKSGNTFRPE 351 (475)
T ss_pred cCCCceEEEE-CCC-CcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcC-CCCCceEEEeecCCCCCCCe
Confidence 54 69999 433 221 01 1246999999999999999999993 44433444553 367787
Q ss_pred eec--CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCc---Ccc---ceeEEEEcCCCCCC
Q psy17146 632 IIS--HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPL---KEG---IKSTLIIRESRHDH 702 (1011)
Q Consensus 632 i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~---~~~---~~~~L~I~~~~~~d 702 (1011)
+.. +....+..|+.++|.|.+.|. |.+..|+|+|||+.+.... ......... .++ ..+.|.|.....+|
T Consensus 352 v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~--~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~ 429 (475)
T 1iga_A 352 VHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK--YLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429 (475)
T ss_pred EEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCc--eeecccccccCCCCCcEEEEEEEEEChHHhcC
Confidence 753 233347789999999999997 4334899999999986421 111100000 122 34678898888889
Q ss_pred CEEEEEEEEcCCCCe
Q psy17146 703 FGVYNCSVSNPYGSD 717 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~ 717 (1011)
.|.|+|.|.|.....
T Consensus 430 ~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 430 GDTFSCMVGHEALPL 444 (475)
T ss_pred CCEEEEEEEcCCCCC
Confidence 999999999987653
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-31 Score=306.51 Aligned_cols=343 Identities=14% Similarity=0.213 Sum_probs=224.9
Q ss_pred eeCCcccccCCcEEEEEEeecCC-CccEEEEEECC--eec----C--------------CC---------cCccEEEEee
Q psy17146 309 VIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QPV----P--------------AA---------ASATELYLTN 358 (1011)
Q Consensus 309 ~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~l----~--------------~~---------~~~~~L~I~~ 358 (1011)
......+.+|++++|.|.+.+.+ ....+.|||++ ..+ . .. .....|.|.+
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (434)
T 1igy_B 5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS 84 (434)
T ss_dssp CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence 34567899999999999999874 23489999863 221 0 00 1124799999
Q ss_pred cccccCCcEEEEEEEcCCccceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCCcee
Q psy17146 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDSDKV 432 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~~~~ 432 (1011)
++.+ |+|.|+|.|.|..+.....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++....
T Consensus 85 v~~~-D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 85 LTSD-DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp BCGG-GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred CChH-HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9998 99999999998655555667888863 4554433323346899999999999886 776 999999986421
Q ss_pred -------ec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeee
Q psy17146 433 -------VG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500 (1011)
Q Consensus 433 -------~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~ 500 (1011)
.. ....|.|.++..+| |.|+|.|.|..+.. .....+.+..+ .|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~-------------------~~~v~~ 222 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDC-------------------GCKPCI 222 (434)
T ss_dssp EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCC-------------------CCCCCC
T ss_pred eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCC-------------------CCcccc
Confidence 11 11347888888889 99999999864432 11111111100 010000
Q ss_pred CCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEEEEecCC----CC
Q psy17146 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLCDVDGNP----AP 574 (1011)
Q Consensus 501 ~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C~~~g~p----~p 574 (1011)
.+.+ ..|.+ ...|.... +.+|+.++|.|.+.|.+ .+
T Consensus 223 ~~~~--------------------------------------~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~ 264 (434)
T 1igy_B 223 CTVP--------------------------------------EVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEV 264 (434)
T ss_dssp CCCS--------------------------------------SSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCC
T ss_pred CCCC--------------------------------------cCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCe
Confidence 0000 00222 22232222 78999999999999984 35
Q ss_pred eEEEEecCCceeec--------------CCCcEEEeecCCCCCEEEEEEEEecCCCc--eeeEEEE--EEcCCCeeec-C
Q psy17146 575 EITWIHEDSDKVVG--------------NSPNLTLLMTSDDLAGRYYCKASVMGFPE--VGAEATV--YLKGRPTIIS-H 635 (1011)
Q Consensus 575 ~v~W~k~~~~~~~~--------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~ 635 (1011)
.+.|+|++..+... ..+.|.|.++..+|+|.|+|.|.|. .+. ....+.+ .+..+|.+.. +
T Consensus 265 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~~P~v~~~~ 343 (434)
T 1igy_B 265 QFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSA-AFPAPIEKTISKTKGKPRAPQVYTIP 343 (434)
T ss_dssp CBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCS-SCSSCCCCCCCCCCSCCBCCCCEEEC
T ss_pred EEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECC-CCCCceeEEEeccCCCCcCCEEEEEC
Confidence 89999998654211 1347999999999999999999993 332 2333333 4566787752 2
Q ss_pred CceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
.......|+.++|.|.+.|. |++..|+|+|||..+... ....... ..++ ..+.|.|.....+|.|.|+|.|.
T Consensus 344 ~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~--~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~ 419 (434)
T 1igy_B 344 PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENY--KNTQPIM--DTDGSYFVYSKLNVQKSNWEAGNTFTCSVL 419 (434)
T ss_dssp CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCC--EECCCCC--CSSSCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCc--eecccee--CCCCcEEEEEEEEECchhccCCCEEEEEEE
Confidence 22224467789999999996 544589999999988421 1111100 1122 24578888888889999999999
Q ss_pred cCCCC
Q psy17146 712 NPYGS 716 (1011)
Q Consensus 712 N~~G~ 716 (1011)
|....
T Consensus 420 n~~l~ 424 (434)
T 1igy_B 420 HEGLH 424 (434)
T ss_dssp ETTSG
T ss_pred cCCCC
Confidence 98764
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=267.40 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=200.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee----eccCCcEEEEeeccCCCeEEEEEEEEcCCccee
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG 465 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s 465 (1011)
+|.+...+....+.+|+.++|.|.+.+ .+.|++++.... ......|.|.+++.+|+|.|+|.|.|..+. .+
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~ 78 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GS 78 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------C
T ss_pred CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCc-ce
Confidence 566777778889999999999999987 499999875432 335678999999999999999999864222 23
Q ss_pred eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecc
Q psy17146 466 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGP 545 (1011)
Q Consensus 466 ~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P 545 (1011)
.. ..|.|..+|
T Consensus 79 ~~---------------------------------------------------------------------~~l~V~~~~ 89 (289)
T 3ejj_X 79 TT---------------------------------------------------------------------IHLYVKDPA 89 (289)
T ss_dssp EE---------------------------------------------------------------------EEEEECCSS
T ss_pred eE---------------------------------------------------------------------EEEEEeCCC
Confidence 33 344444444
Q ss_pred e-eecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCce-------eecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 546 R-FRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 546 ~-~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
. +...+....+.+|+.+.|.|.+.+.+.+. +.|++.+... ....++.|.|.++..+|+|.|+|.|.|...+
T Consensus 90 ~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~ 169 (289)
T 3ejj_X 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169 (289)
T ss_dssp CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCc
Confidence 3 45556788899999999999999988775 9998754332 3345678999999999999999999965667
Q ss_pred ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 617 EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 617 ~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
..+..+.|.|. .+|.|. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++|..+.... ..... .......
T Consensus 170 ~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~--~~~~~--~~~~~~~ 244 (289)
T 3ejj_X 170 STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF-NVILKRGDTKLEIPL--NSDFQ--DNYYKKV 244 (289)
T ss_dssp EECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCC-EEEEEETTEECCCCE--EEEEC--SSSEEEE
T ss_pred cccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCce-EEEEEECCEEeeccC--Ccccc--cceEEee
Confidence 77888889997 678877 445666789999999999999 6788 999999999886321 11111 1112235
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+.|.|.++..+|+|.|+|.|.|.+|.+++++.|.+.+
T Consensus 245 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp EEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred EEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 7999999999999999999999999999999998754
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-30 Score=281.58 Aligned_cols=267 Identities=17% Similarity=0.252 Sum_probs=198.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCceee-------ccCCcEEEEeeccCCCeEEEEEEEEcCC
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV-------GNSPNLTLLMTSDDLAGRYYCKASVMGF 461 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 461 (1011)
+|.|... .+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+.. .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 7 ~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 85 (317)
T 2y25_A 7 GPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85 (317)
T ss_dssp CCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSC
T ss_pred CCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCC
Confidence 5667643 35889999999999999887 7899999999854331 2235799999999999999999998543
Q ss_pred cceeeEEEEEEcCCCeeec-cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 462 PEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 462 ~~~s~~~~v~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
.....+.|.+..+|.+.. .....+..|+.+.+.|.
T Consensus 86 -~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~------------------------------------------- 121 (317)
T 2y25_A 86 -KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST------------------------------------------- 121 (317)
T ss_dssp -EEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEEC-------------------------------------------
T ss_pred -cEEEEEEEEEecCccccccCCceecccCCCeEEEee-------------------------------------------
Confidence 233334444333332221 12233445555555551
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
.+.+.|.|.+.+ .|.+.+.|++++..+... ....|.|.++..+|+|.|+|.|
T Consensus 122 ------------------~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 183 (317)
T 2y25_A 122 ------------------AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183 (317)
T ss_dssp ------------------SSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEE
T ss_pred ------------------ccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEE
Confidence 233566666655 688999999998664321 1234999999999999999999
Q ss_pred EecCCCceeeEEEEEEcC--------------------CCeeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 611 SVMGFPEVGAEATVYLKG--------------------RPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V~~--------------------~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
.| ..+.....+.|.|.. +|.+.. +....+..|+.++|.|.+.|.|.| .+.|+++|.
T Consensus 184 ~n-~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~ 261 (317)
T 2y25_A 184 FD-GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEK 261 (317)
T ss_dssp EC-SSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCC-EEEEEESSS
T ss_pred Ee-CCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCC-EEEEEECCE
Confidence 99 677777777777542 344442 345679999999999999999999 999999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+. ...++.+... ++..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 262 ~~~--~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 262 ALA--SDDHCNLKFE---AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp EEC--CCSSEEECCB---TTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eCC--CCCcEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 997 4456666542 2446799999999999999999999999999999999885
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=261.97 Aligned_cols=247 Identities=19% Similarity=0.271 Sum_probs=195.0
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
.|.|...|.+..+.+|+.+.|.|.+.+.|.+ .+.|+|++..+ ......|.|.+++.+|+|.|+|.|.|.. .+..+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~s~~~ 76 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT-QTSTPSYRITSASVNDSGEYRCQRGLSG---RSDPI 76 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEEC-SCCSSEEEESSCCGGGCEEEEEEESSSC---CCCCE
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEe-eccCCeEEEecCCcccCeEEEEEEecCC---ccccE
Confidence 4778888889999999999999999999988 99999987554 3346789999999999999999997532 11223
Q ss_pred EEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceee
Q psy17146 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFR 548 (1011)
Q Consensus 469 ~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~ 548 (1011)
. |.|..++ +.
T Consensus 77 ~---------------------------------------------------------------------l~v~~~~-~~ 86 (262)
T 3rjd_A 77 Q---------------------------------------------------------------------LEIHRGW-LL 86 (262)
T ss_dssp E---------------------------------------------------------------------EEEECSS-EE
T ss_pred E---------------------------------------------------------------------EEEeccc-eE
Confidence 3 3333333 22
Q ss_pred cCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec-CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG-NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~-~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+.|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|
T Consensus 87 ~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n-~~~~~~~~~~l~V 165 (262)
T 3rjd_A 87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMG-KHRYTSAGISVTV 165 (262)
T ss_dssp EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEES-SSEEEEECEEEEE
T ss_pred ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeC-CCCccccceEEEe
Confidence 23345567889999999999 78888999999999776544 368999999999999999999999 4577788888888
Q ss_pred cC---CCeeecCCceeeecCCcEEEEEEEEecCC-CC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 627 KG---RPTIISHRTQFGIPGDTARVECSAFSIPP-PE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 627 ~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.. +|.+.......+.+|+.++|.|.+.+.|. |. .+.|+++|..+... ...+.|.|.++.
T Consensus 166 ~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------------~~~~~L~i~~v~ 231 (262)
T 3rjd_A 166 KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------------NTSSEYQILTAR 231 (262)
T ss_dssp ECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------------ESCCEEEESSCC
T ss_pred ccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------------CCCceEEEEEec
Confidence 74 57777666677899999999999999986 41 37899999988631 123689999999
Q ss_pred CCCCEEEEEEEEcCCCCe---EEEEEEEe
Q psy17146 700 HDHFGVYNCSVSNPYGSD---SVEIMLKP 725 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~---~~~~~l~V 725 (1011)
.+|+|.|+|.|.|..|+. +..+.|.|
T Consensus 232 ~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 232 REDSGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp GGGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred hhhCeEEEEEEEcccCceEEecCCeEEEE
Confidence 999999999999999965 33445444
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=268.74 Aligned_cols=288 Identities=23% Similarity=0.363 Sum_probs=204.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecC-----------CcccCCCCcceEEeecCCCcee
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALG-----------PHRNLSGFDRYAMIGSDEEGDY 90 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~-----------~~~~~~~~~r~~i~~~~~~~~~ 90 (1011)
++.+...|.++.+.+|++|+|.|.+.+. ...+.|+|++.... ........+|+.+. +...+..
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~ 92 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDG 92 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBC
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCc
Confidence 3445566788999999999999999874 22699999642110 00111233677776 2344567
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCC---CcEEEEEEccCCCCCcEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED---REIELECISANGKPPAEIT 167 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg---~~v~L~C~~~~g~P~~~i~ 167 (1011)
+|.|.+++.+|+|.|+|.+.+... +..+..+.|.|..+|..........+.+.+| +.+.|.|.+..+.|.+.++
T Consensus 93 ~L~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~ 169 (331)
T 3u83_A 93 TIRLSRLELEDEGVYICEFATFPT---GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS 169 (331)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred eEEEcccCcccCcEEEEEEEecCC---CccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence 899999999999999999554322 3467778899998765444445567778888 7799999867899999999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcce
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~ 247 (1011)
|+|++....... ........+...+.|.|.++..+|+|.|+|.|.|..+.. +..+.|.|..+|.+.+...
T Consensus 170 W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~~~P~~~~~~~---- 239 (331)
T 3u83_A 170 WETRLKGEAEYQ----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF--KESLTLNVQYEPEVTIEGF---- 239 (331)
T ss_dssp EEESSCCEEEEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE--EEEEECCEEEEEEEEEECC----
T ss_pred EEcCCCCccccc----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc--eeeEEEEEecCCeEEEecC----
Confidence 999643332211 122233455666789999999999999999999997754 5667777777776543322
Q ss_pred eecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEe
Q psy17146 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327 (1011)
Q Consensus 248 v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~ 327 (1011)
....+.+|+.++|.|.+
T Consensus 240 ---------------------------------------------------------------~~~~~~~g~~~~l~C~~ 256 (331)
T 3u83_A 240 ---------------------------------------------------------------DGNWYLQRMDVKLTCKA 256 (331)
T ss_dssp ---------------------------------------------------------------CSCCBTTCCCEEEEEEE
T ss_pred ---------------------------------------------------------------CCceEeCCCeEEEEEeC
Confidence 22346677778888888
Q ss_pred ecCCCccEEEEEECCeecCCC--cCccEEEEe-ecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 328 EANPSHMKYRWYINDQPVPAA--ASATELYLT-NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 328 ~~~p~~~~i~W~k~g~~l~~~--~~~~~L~I~-~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
.+.|.+..+.|++++..+... .....|.|. ++..+ |+|.|+|.|.|..|..+.++.|.|...+.
T Consensus 257 ~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 257 DANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYS-LAGTYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp EEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGG-GCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred cCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccc-cCeEEEEEEEeccccceEEEEEEEeccch
Confidence 777776348888888877553 245689999 89988 99999999999999999999999887554
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=277.27 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=165.9
Q ss_pred CCceEecCCCcEEEEeecCCCCC-----------CceEEEeCCCc--------------eeeccCCcEEEEeeccCCCeE
Q psy17146 397 PYSVQVDRGAGVNLLCDVDGNPA-----------PEITWIHEDSD--------------KVVGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 397 p~~~~v~~G~~v~l~C~~~g~p~-----------p~v~W~k~~~~--------------~~~~~~~~L~I~~v~~~d~G~ 451 (1011)
..++.+.+|+.+.|.|.+.+.|. +.+.|+|++.. +.......|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 46778999999999999998775 89999999842 112346679999999999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCC
Q psy17146 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G 531 (1011)
|+|.|.|..+ .....+.|.|..++...
T Consensus 94 Y~C~a~n~~~-~~~~~~~l~V~~~~~~~---------------------------------------------------- 120 (349)
T 4dep_C 94 YTCMLRNTTY-CSKVAFPLEVVQKDSCF---------------------------------------------------- 120 (349)
T ss_dssp EEEEEECSSC-EEEEEEEEEEECCCTTS----------------------------------------------------
T ss_pred EEEEEecCCc-eEEEEEEEEEecCCccc----------------------------------------------------
Confidence 9999997422 22233334333222100
Q ss_pred CCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-----ecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCC
Q psy17146 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-----DGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 532 ~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-----~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~ 601 (1011)
+.....+....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ..++..|.|.++..+
T Consensus 121 -------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~ 187 (349)
T 4dep_C 121 -------------NSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS 187 (349)
T ss_dssp -------------CCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGG
T ss_pred -------------CcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeec
Confidence 011123446678999999999985 888999999999986442 233467999999999
Q ss_pred CCEEEEEEEEecCCCc---eeeEEEEEEcC------CCeeecCCce---eeecCCcEEEEEEEE----ecCCCCeEEEEE
Q psy17146 602 LAGRYYCKASVMGFPE---VGAEATVYLKG------RPTIISHRTQ---FGIPGDTARVECSAF----SIPPPEKVTWSY 665 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~---~s~~~~l~V~~------~P~i~~~~~~---~v~~G~~v~L~C~~~----g~p~p~~v~W~~ 665 (1011)
|+|.|+|.|.|...+. .+..+.|.|.. +|.|..+... .+..|+.++|.|.+. |.|.| .+.|++
T Consensus 188 d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p-~v~W~~ 266 (349)
T 4dep_C 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRN-EVWWTI 266 (349)
T ss_dssp GCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCC-EEEEES
T ss_pred CCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCC-EEEEEE
Confidence 9999999999943244 36777888866 6888755432 788999999999999 46888 999999
Q ss_pred CCeEecccCCCCeEEec-----CCcCccceeEEEEcCCCCCCC-EEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 666 RGEEIGVGSSDDYSVLE-----DPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~-----~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+|..+... ..++.+.. ........+.|.|.++..+|+ |.|+|.|.|.+|..+..+.|.|...
T Consensus 267 ~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~ 334 (349)
T 4dep_C 267 DGKKPDDI-TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP 334 (349)
T ss_dssp SCC---------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC------
T ss_pred CCEEcccc-CCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecC
Confidence 99988741 12222211 000011246699999999999 9999999999999999999998653
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-27 Score=274.19 Aligned_cols=394 Identities=15% Similarity=0.191 Sum_probs=233.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---C--CeeEEeeCC--eecC----Ccc------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---T--GVLQWTKDD--FALG----PHR------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~--~~v~W~k~~--~~l~----~~~------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|..+.+.+|++|+|.|.+.+. . ..+.|+|+. ..+. ... .-...+|+.+..+...+.++|+|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 4778999999999999999862 2 579999863 2110 000 001236888887666678999999
Q ss_pred ecccCCCceEEEEEEeCCC---------CCcceeeeEEEEEEEcC-CCCCeeecC-C-eeeecCCCcEEEEEEccCCCCC
Q psy17146 96 PVMLDDDARYQCQVSTGIL---------GEPAIRSRFATLTVLVP-PDPPRIVQG-D-TLYTTEDREIELECISANGKPP 163 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~---------~~~~~~s~~~~l~V~~~-p~~~~i~~~-~-~~~v~eg~~v~L~C~~~~g~P~ 163 (1011)
+++.+|+|.|+|.+.+... .........+.|+|... +.+|.+... + .....+|+.+.|.|.+.+..|.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9999999999999987531 00111234467888743 345555421 1 1101246899999996555587
Q ss_pred c-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE---------EEEEEEE
Q psy17146 164 A-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA---------RLKLLVK 233 (1011)
Q Consensus 164 ~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~---------~v~v~v~ 233 (1011)
+ +++|++++.... .............+...+.|.|.....+ .|.|+|.|.|..+...... .+.|.+.
T Consensus 166 p~~v~W~~~~~~~~--~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~ 242 (512)
T 1zvo_C 166 SVTVTWYMGTQSQP--QRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPT 242 (512)
T ss_pred ceEEEEEcCcccCc--eEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEe
Confidence 5 999999654321 1100001111224555678999988777 9999999999988764333 1223333
Q ss_pred eCCceEEEe---c-CcceeecC-----------ce--------EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEE
Q psy17146 234 YAPKVQVSV---I-GSNRLVEG-----------TD--------VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLT 290 (1011)
Q Consensus 234 ~~P~~~~~~---~-~~~~v~~g-----------~~--------v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~ 290 (1011)
.+|...-.. . .......| .. ..-.|.....+ +.+.
T Consensus 243 ~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--p~v~-------------------- 300 (512)
T 1zvo_C 243 AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQP--LGVY-------------------- 300 (512)
T ss_pred CCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCC--CEEE--------------------
Confidence 333210000 0 00000000 00 00011000001 1111
Q ss_pred eeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecC-CCccEEEEEECCeecCCC---------cC-----ccEEE
Q psy17146 291 NITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAA---------AS-----ATELY 355 (1011)
Q Consensus 291 ~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~~i~W~k~g~~l~~~---------~~-----~~~L~ 355 (1011)
+.......+.+|+.++|.|.+.+. |..+.++|+|+|..+... .+ ...|.
T Consensus 301 ----------------~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~ 364 (512)
T 1zvo_C 301 ----------------LLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLT 364 (512)
T ss_pred ----------------EECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEE
Confidence 000122346789999999999886 445699999999876521 01 13588
Q ss_pred EeecccccCCcEEEEEEEcCCccceeeEEEEE------EecceEeeCCCceEecCCCcEE-EEeecCCCCCC--ceEEEe
Q psy17146 356 LTNITRHQHDSIVKCEVHNDVGKSEDSETLDV------TYGPRFRARPYSVQVDRGAGVN-LLCDVDGNPAP--EITWIH 426 (1011)
Q Consensus 356 I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V------~~~P~~~~~p~~~~v~~G~~v~-l~C~~~g~p~p--~v~W~k 426 (1011)
|...... |.|.|+|.|.|..+... ...+.. ..+|.+...+... +|+.+. |.|.+.|++++ .+.|+|
T Consensus 365 i~~~~~~-d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k 439 (512)
T 1zvo_C 365 LPRSLWN-AGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLE 439 (512)
T ss_pred EchHHhc-CCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEE
Confidence 8877776 89999999999887653 222322 2356655443322 799999 99999986544 689999
Q ss_pred CCCceee----------ccCC-------cEEEEeeccCCCeEEEEEEEEcCCc-ceeeEEEEEE
Q psy17146 427 EDSDKVV----------GNSP-------NLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYL 472 (1011)
Q Consensus 427 ~~~~~~~----------~~~~-------~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~v~v 472 (1011)
+|..+.. ...+ .|.|.....+|.|.|+|.|.|.+.. .......+.+
T Consensus 440 ~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 440 DQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred CCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence 9854321 1122 2334444455699999999996543 3334444444
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=271.49 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=189.8
Q ss_pred ceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee---------------------------eccCCcEEEEeeccCCCe
Q psy17146 399 SVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV---------------------------VGNSPNLTLLMTSDDLAG 450 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~---------------------------~~~~~~L~I~~v~~~d~G 450 (1011)
++++.+|++++|.|.+.+. |.+.++|+|++.... ......|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 5688999999999998654 445799999753211 012357999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|...+..+..+.+.+..+|.+.
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~--------------------------------------------------- 116 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVS--------------------------------------------------- 116 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEE---------------------------------------------------
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccc---------------------------------------------------
Confidence 99999998766655555555554333221
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec----------CCCcEEEeecC
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTS 599 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~ 599 (1011)
+...+.......|+.+.|.|.+ .|.|.+.++|+|++..+... ..+.|.|..+.
T Consensus 117 ----------------~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~ 180 (308)
T 4fom_A 117 ----------------LIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTR 180 (308)
T ss_dssp ----------------EEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCG
T ss_pred ----------------cccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeee
Confidence 1222334445567888899875 68899999999998665321 12469999999
Q ss_pred CCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCC
Q psy17146 600 DDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~ 676 (1011)
.+|+|.|+|.|.|. +....+..+.|.|..+|.+.. .....+..|+.++|.|.+.|.|.|..+.|+|+|..+...
T Consensus 181 ~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~--- 257 (308)
T 4fom_A 181 FARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG--- 257 (308)
T ss_dssp GGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS---
T ss_pred ecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc---
Confidence 99999999999994 345566778888888998763 344567789999999999999998569999999887531
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
... .....|.|.+++.+|+|.|+|.|+|.+|..+.++.|.|.++
T Consensus 258 -~~~-------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~ 301 (308)
T 4fom_A 258 -LLA-------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDP 301 (308)
T ss_dssp -CBC-------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECC
T ss_pred -EEE-------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcC
Confidence 111 11357788999999999999999999999999999988643
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=278.38 Aligned_cols=282 Identities=19% Similarity=0.324 Sum_probs=143.3
Q ss_pred CCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 396 RPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 396 ~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|. +..+..+.
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~--~~~~~~~~ 91 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT--QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC--CeEEEEEE
Confidence 3778889999999999999887 678999999986543 224578999999999999999999987 44555666
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
|.|...+......... .+..+ ......+|.|..
T Consensus 92 l~V~~~~~~~~~~~~~--------------------------------------------~~~~~---~~~~~~~p~~~~ 124 (334)
T 1ry7_B 92 VRVTDAPSSGDDEDGE--------------------------------------------DEAED---TGVDTGAPYWTR 124 (334)
T ss_dssp --------------------------------------------------------------------------CCCCSC
T ss_pred EEEeccCccccccccc--------------------------------------------ccccc---ccccCCCCEEec
Confidence 6665444321110000 00000 011123455543
Q ss_pred C----CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 550 R----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 550 ~----p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
. +....+.+|+.++|.|.+.|.|.+.+.|+|++..+.. ....+|.|.++..+|+|.|+|.|.| ..
T Consensus 125 p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 203 (334)
T 1ry7_B 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN-KF 203 (334)
T ss_dssp CTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEE-TT
T ss_pred cccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEe-CC
Confidence 3 2357889999999999999999999999999865432 2346899999999999999999999 56
Q ss_pred CceeeEEEEEEcC----CCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCCeEEecCC-
Q psy17146 616 PEVGAEATVYLKG----RPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDDYSVLEDP- 684 (1011)
Q Consensus 616 ~~~s~~~~l~V~~----~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~~~~~~~~- 684 (1011)
+..+..+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|.| .+.|+| ||..+.......+.+....
T Consensus 204 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~ 282 (334)
T 1ry7_B 204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282 (334)
T ss_dssp EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE-EEEEEECCCGGGCSBCTTSSBCCCCCCCSS
T ss_pred CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC-eEEEEECCcCCCccccCCCCeeEEEeecCc
Confidence 7788888888875 34554 2456779999999999999999999 999999 7877764332222222211
Q ss_pred --cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 685 --LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 685 --~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
...+..+.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.+.
T Consensus 283 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 328 (334)
T 1ry7_B 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328 (334)
T ss_dssp CSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECS
T ss_pred cccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEEC
Confidence 00122358999999999999999999999999999999998654
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=255.41 Aligned_cols=253 Identities=19% Similarity=0.270 Sum_probs=184.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.|.+.|.++.+.+|++++|.|.+.+ +.+ .+.|+|++..+... ..+|.|.+++.+|+|.|
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------------------~~~l~i~~~~~~d~G~Y 63 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------------TPSYRITSASVNDSGEY 63 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------------------SSEEEESSCCGGGCEEE
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------------------CCeEEEecCCcccCeEE
Confidence 67899999999999999999999987 444 89999999776321 23699999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+.. .+..+.|.|..++ .+.......+.+|+.+.|.|.+..+.|.+.+.|+|++..+....
T Consensus 64 ~C~~~~~~------~s~~~~l~v~~~~---~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------ 128 (262)
T 3rjd_A 64 RCQRGLSG------RSDPIQLEIHRGW---LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------ 128 (262)
T ss_dssp EEEESSSC------CCCCEEEEEECSS---EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------
T ss_pred EEEEecCC------ccccEEEEEeccc---eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------
Confidence 99998642 3445778887543 44444556778999999999955888999999999887763321
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC-CceEEEecCcceeecCceEEEEEEcccCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA-PKVQVSVIGSNRLVEGTDVRLYCKAEANP 264 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~-P~~~~~~~~~~~v~~g~~v~L~C~~~~~~ 264 (1011)
....|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|... +...+.......+.+|+.+.|.|.+.+.+
T Consensus 129 --------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p 198 (262)
T 3rjd_A 129 --------WNSNLTILKTNISHNGTYHCSGMGKHRYT--SAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLL 198 (262)
T ss_dssp --------ECCCEEESSCCGGGCEEEEEEEESSSEEE--EECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCC
T ss_pred --------CCCeEEEEECChhhCEEEEEEEeCCCCcc--ccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCC
Confidence 12479999999999999999999987543 55566666653 22223333333344555555555554443
Q ss_pred CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCee
Q psy17146 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 344 (1011)
Q Consensus 265 ~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~ 344 (1011)
..+.+. +.+.|++++..
T Consensus 199 ~~p~~~---------------------------------------------------------------~~~~w~~~~~~ 215 (262)
T 3rjd_A 199 QRPGLQ---------------------------------------------------------------LYFSFYMGSKT 215 (262)
T ss_dssp C--------------------------------------------------------------------EEEEEEETTEE
T ss_pred CCCCcc---------------------------------------------------------------EEEEEEeCCcE
Confidence 211222 25789999988
Q ss_pred cCCCcCccEEEEeecccccCCcEEEEEEEcCCccc---eeeEEEEE
Q psy17146 345 VPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS---EDSETLDV 387 (1011)
Q Consensus 345 l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~---~~s~~l~V 387 (1011)
+........|.|.++..+ |+|.|+|.|.|..|.. +..+.|.|
T Consensus 216 ~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 216 LRGRNTSSEYQILTARRE-DSGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp EEEEESCCEEEESSCCGG-GCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred ecccCCCceEEEEEechh-hCeEEEEEEEcccCceEEecCCeEEEE
Confidence 876667789999999998 9999999999999975 23444444
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=263.27 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=193.3
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCC-CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~-~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
.+..+.+|+.++|.|.+.+ .+.|+|++..+.. ...+..|.|.+++.+ |+|.|+|.|.| |. +.++.|.|..
T Consensus 20 ~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n--g~-~~~~~l~V~~ 90 (290)
T 2o26_X 20 SELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNEMVENKKNEWIQEKAEAT-RTGTYTCSNSN--GL-TSSIYVFVRD 90 (290)
T ss_dssp SEEEEETTSCEEEEEECTT-----EEEEEEECSSSCEEEECSSEEEETTCCGG-GCEEEEEEESS--SC-EEEEEEEEEC
T ss_pred CeEEEcCCCcEEEEECCCC-----cEEEecCCcceeeecCCCceEEEeccCHH-hCeEEEEEeeC--Cc-cEEEEEEEeC
Confidence 3456899999999999987 8999999987711 133489999999998 99999999999 54 7888999998
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCC-CceEEE-eCCCce------eeccCCcEEEEeeccCCCe-EEEEEEEEcC
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWI-HEDSDK------VVGNSPNLTLLMTSDDLAG-RYYCKASVMG 460 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-p~v~W~-k~~~~~------~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~ 460 (1011)
+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+ .......|.|.+++.+|+| .|+|.|.|.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~ 169 (290)
T 2o26_X 91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDG 169 (290)
T ss_dssp SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETT
T ss_pred CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECC
Confidence 887667777888999999999999995 77 899995 555432 2344578999999999999 9999999864
Q ss_pred CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 461 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 461 ~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
+...+..+.|.|...
T Consensus 170 ~~~~s~~~~l~V~~~----------------------------------------------------------------- 184 (290)
T 2o26_X 170 TWLHSDKFTLKVREA----------------------------------------------------------------- 184 (290)
T ss_dssp EEEECCCEEEEEECC-----------------------------------------------------------------
T ss_pred ceEEeEEEEEEEEeC-----------------------------------------------------------------
Confidence 433333444443210
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCce----------------eecCCCcEEEeecCCCCC
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK----------------VVGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~----------------~~~~~~~L~I~~v~~~d~ 603 (1011)
+..+|.+...+....+.+|+.++|.|.+.|.|.|. +.|+|++... .....+.|.|.++..+|+
T Consensus 185 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~ 264 (290)
T 2o26_X 185 IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDS 264 (290)
T ss_dssp CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSC
T ss_pred CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccC
Confidence 11466777777777889999999999999999996 9999999773 123356899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.|+|.|.| ..|..+..+.|.|.++|
T Consensus 265 G~Y~C~a~N-~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 265 GVFMCYANN-TFGSANVTTTLKVVEKG 290 (290)
T ss_dssp EEEEEEEEC-SSCEEEEEEEECC----
T ss_pred eEEEEEEeC-CCCcEEEEEEEEEEeCC
Confidence 999999999 67888999999998776
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=264.59 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=205.4
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+... .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4789999999999999999999999999999999999998544321 12 389999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC------CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~------~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
| ..+..+..+.|.|..+|.+..+ ....+..|+.+.|.|.+.|.|.| .+.|++++..+. ...++.+..
T Consensus 83 n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~--~~~~~~~~~--- 155 (305)
T 2nzi_A 83 N-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLID--NNGHYQVIV--- 155 (305)
T ss_dssp E-TTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC-EEEEEESSSBCC--SSSSCEEEE---
T ss_pred c-CCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC-EEEEEECCEECC--CCCcEEEEE---
Confidence 9 5677888999999988887533 45678899999999999999999 999999999887 345565543
Q ss_pred CccceeEEEEcC-CCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCC
Q psy17146 686 KEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPP 764 (1011)
Q Consensus 686 ~~~~~~~L~I~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 764 (1011)
.+....|.|.+ +..+|.|.|+|.|.|..|..+..+.|.|. ..+.+|
T Consensus 156 -~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~--------------------------------~~P~~p 202 (305)
T 2nzi_A 156 -TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA--------------------------------DVPDPP 202 (305)
T ss_dssp -CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE--------------------------------BCCCCC
T ss_pred -cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe--------------------------------cCCCCC
Confidence 23357899999 99999999999999999999999999873 344578
Q ss_pred CCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCCCCC
Q psy17146 765 GNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 765 ~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~g~~ 817 (1011)
.++.+..+..+++.++| |..+++++|..|.++++.... .|...|.| | +|.|++
T Consensus 203 ~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~ 282 (305)
T 2nzi_A 203 RGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKP 282 (305)
T ss_dssp EEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred CCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence 88888888999999999 567888999999999887543 67778999 5 899999
Q ss_pred C--ccccccccccccccc
Q psy17146 818 G--SESVHTRIGVPLAGP 833 (1011)
Q Consensus 818 s--s~~~~t~~~~P~~~P 833 (1011)
| +..+.|+++.|....
T Consensus 283 S~~~~~~~t~~~~p~~~~ 300 (305)
T 2nzi_A 283 SEPSEPTITKEDKTRAMN 300 (305)
T ss_dssp CCCCCCEECCC-------
T ss_pred cCCCCCEEcCCccccccc
Confidence 8 556777777776544
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=269.45 Aligned_cols=259 Identities=19% Similarity=0.294 Sum_probs=192.6
Q ss_pred CceEecCCCcEEEEeecCCCC-CCceEEEeCCCc---------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 398 YSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~---------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
..+.+.+|+.+.|.|.+.+.| .+.+.|+|++.. +.......|.|.+++.+|+|.|+|.|.|..+ .....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-~~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-CLRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSC-CCCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCce-EEEEE
Confidence 356789999999999999888 789999999853 2233456899999999999999999996422 11111
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.+.+ +..+|.+
T Consensus 92 ~~v~v--------------------------------------------------------------------~~~~p~~ 103 (315)
T 1itb_B 92 ISAKF--------------------------------------------------------------------VENEPNL 103 (315)
T ss_dssp CCCEE--------------------------------------------------------------------ECCCTTS
T ss_pred EEEEE--------------------------------------------------------------------eCCCCCc
Confidence 11111 1123333
Q ss_pred ecCC---ceEEEcCCCcEEEEEEE------ecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 548 RARP---YSVQVDRGAGVNLLCDV------DGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 548 ~~~p---~~~~v~~G~~~~l~C~~------~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
...+ ....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|
T Consensus 104 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~ 183 (315)
T 1itb_B 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY 183 (315)
T ss_dssp SSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred ccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEc
Confidence 3222 24668899999999998 899999999999986552 34467999999999999999999993
Q ss_pred cCCCce---eeEEEEEEc-----CCCeeecCCc--eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC----CCe
Q psy17146 613 MGFPEV---GAEATVYLK-----GRPTIISHRT--QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS----DDY 678 (1011)
Q Consensus 613 ~~~~~~---s~~~~l~V~-----~~P~i~~~~~--~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~----~~~ 678 (1011)
...+.. +..+.+.+. .+|.|..+.. ..+.+|+.++|.|.+.|.|.| .+.|++||..+..... .++
T Consensus 184 n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~ 262 (315)
T 1itb_B 184 TYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYY 262 (315)
T ss_dssp EETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS-EEEEEETTEECCTTCSSEEEEEE
T ss_pred CCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC-eeEEEECCEECCcccccccccce
Confidence 244443 445555443 6788875543 468899999999999999999 9999999999875332 111
Q ss_pred EEecCCcC--ccceeEEEEcCCCCCC-CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 679 SVLEDPLK--EGIKSTLIIRESRHDH-FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 679 ~~~~~~~~--~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+...... ....+.|.|.++..+| +|.|+|.|.|.+|.++.++.|.|.
T Consensus 263 ~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred eeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 11110000 0134699999999999 999999999999999999999874
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=264.63 Aligned_cols=261 Identities=15% Similarity=0.204 Sum_probs=187.0
Q ss_pred CceEecCCCcEEEEeec-CCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 398 YSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
..+.+.+|+.+.|.|.. .+.|.+.+.|+|++..+. .+....|.|.+++.+|+|.|+|.|.|..+... .
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s 86 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S 86 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence 35678899999998888 468999999999985432 11235799999999999999999997543222 2
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.+.+.....+.... ....+|.+
T Consensus 87 ~~l~v~~~~~~~~~~---------------------------------------------------------~~~~~p~~ 109 (312)
T 2y23_A 87 YLIDEEELKRLLALS---------------------------------------------------------HEHKFPTV 109 (312)
T ss_dssp EEECHHHHHHHHHHH---------------------------------------------------------HHHHSCBC
T ss_pred EEEEEeeeeeeeccc---------------------------------------------------------ccCCCCcc
Confidence 223221100000000 00003444
Q ss_pred ecCCc-eEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCceeecC-----------CCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 548 RARPY-SVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGN-----------SPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 548 ~~~p~-~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~~~~~-----------~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
...+. ...+.+|+.+.|.|.+. +.|.+.+.|+|++..+.... ..+|.|.++..+|+|.|+|.|.| +
T Consensus 110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~ 188 (312)
T 2y23_A 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-G 188 (312)
T ss_dssp CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEES-S
T ss_pred ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEe-C
Confidence 33333 77899999999999999 89999999999986543211 12399999999999999999987 3
Q ss_pred CCceeeEEEEE-------------------EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 615 FPEVGAEATVY-------------------LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 615 ~~~~s~~~~l~-------------------V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
.......+.+. ...+|.+..+....+.+|+.++|.|.+.|.|.|..+.|+|+|..+.. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~--~ 266 (312)
T 2y23_A 189 KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV--D 266 (312)
T ss_dssp SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE--E
T ss_pred CceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC--C
Confidence 33333333331 12346666544577899999999999999988768999999999974 3
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.++.+.. ..+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.++
T Consensus 267 ~~~~~~~------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 267 EKHDFKD------GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp CCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred CcEEEEC------CEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 3444432 25799999999999999999999999999999999874
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=266.76 Aligned_cols=258 Identities=16% Similarity=0.205 Sum_probs=189.8
Q ss_pred CceEecCCCcEEEEeecCCC---------CCCceEEEeCCCceee----ccCCcEEEEeeccCCCe-EEEEEEEEcCCcc
Q psy17146 398 YSVQVDRGAGVNLLCDVDGN---------PAPEITWIHEDSDKVV----GNSPNLTLLMTSDDLAG-RYYCKASVMGFPE 463 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~---------p~p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~ 463 (1011)
....+.+|+.+.|.|.+.+. |.+.++|+|++..... .....|.|.+++.+|+| .|+|.|.|..+..
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~ 116 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCE
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCce
Confidence 35578999999999999774 5679999999865432 34678999999999999 9999999864432
Q ss_pred eeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEe
Q psy17146 464 VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY 543 (1011)
Q Consensus 464 ~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~ 543 (1011)
....+.+.+..
T Consensus 117 ~~~~~~~v~~~--------------------------------------------------------------------- 127 (329)
T 3oq3_B 117 VQGIVRSHIRK--------------------------------------------------------------------- 127 (329)
T ss_dssp EEEEEEEEECC---------------------------------------------------------------------
T ss_pred eeEEEEEEEcC---------------------------------------------------------------------
Confidence 22222222221
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEec-CC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVM-GF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~ 615 (1011)
+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|. ..
T Consensus 128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 207 (329)
T 3oq3_B 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207 (329)
T ss_dssp CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccC
Confidence 22222222223356799999999999999 99999999986542 122589999999999999999999983 12
Q ss_pred Cc----eeeEEEEEEcCCC----eeecCCceeeecCCcEEEEEEEEecC---CCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 616 PE----VGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 616 ~~----~s~~~~l~V~~~P----~i~~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
+. .+..+.|.|..+| .+..+....+..|+.++|.|.+.|.| .|+.+.|+++|..+.......+.....
T Consensus 208 g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~- 286 (329)
T 3oq3_B 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS- 286 (329)
T ss_dssp SSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEE-
T ss_pred CCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecc-
Confidence 22 3344788888776 33466677899999999999999998 454789999999854322221111000
Q ss_pred cCccceeEEEEcCCCCCCCE-EEEEEEEcCCCCeEEEEEEEe
Q psy17146 685 LKEGIKSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
......+.|.|.++..+|+| .|+|.|.|.+|..+.++.|.|
T Consensus 287 ~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp ETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred cCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 00124689999999999999 999999999999999998876
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=265.81 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=196.6
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-e---ccCCcEEEEeeccCCCeEEEEEEEEcCCcce
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-V---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 464 (1011)
.+|.|...+.+..+.+|++++|.|.+.+. +.|++++.... . .....|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~---- 74 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP---- 74 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC------
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCC----
Confidence 47888888889999999999999999874 99998765432 1 223589999999999999999998632
Q ss_pred eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEec
Q psy17146 465 GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG 544 (1011)
Q Consensus 465 s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~ 544 (1011)
|.....+.|.|..+
T Consensus 75 ------------------------------------------------------------------~~~~~~~~l~V~~~ 88 (292)
T 4dkd_C 75 ------------------------------------------------------------------LGGSAAIHLYVKDP 88 (292)
T ss_dssp --------------------------------------------------------------------CCEEECCEECCS
T ss_pred ------------------------------------------------------------------CCcceEEEEEEcCc
Confidence 22233334444444
Q ss_pred ce-eecCCceEEEcCCCcEEEEEEEecCCC--CeEEEEecCCce-------eecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 545 PR-FRARPYSVQVDRGAGVNLLCDVDGNPA--PEITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 545 P~-~~~~p~~~~v~~G~~~~l~C~~~g~p~--p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|. +...+....+.+|+.++|.|.+.+ |. +.+.|++++... ....++.|.|.++..+|+|.|+|.|.|..
T Consensus 89 ~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 167 (292)
T 4dkd_C 89 ARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG 167 (292)
T ss_dssp SCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTT
T ss_pred cccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCC
Confidence 43 344566788999999999999998 54 789999985332 23335669999999999999999999854
Q ss_pred CCceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 615 FPEVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
....+..+.|.|.. +|.|.. +....+.+|+.++|.|.+.+.|.+..+.|++++..+..... ...... ....
T Consensus 168 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~--~~~~ 243 (292)
T 4dkd_C 168 RKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ--SDFHNN--RYQK 243 (292)
T ss_dssp SCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE--EEEETT--EEEE
T ss_pred CceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc--ceeccc--eeee
Confidence 44456688899986 888874 45556789999999999999887658999999887753221 111111 0123
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 244 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp EEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 46899999999999999999999999999999999864
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=264.93 Aligned_cols=254 Identities=15% Similarity=0.260 Sum_probs=191.7
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC----CCCceEEEeCCCc----------------------ee-----eccCCcEE
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN----PAPEITWIHEDSD----------------------KV-----VGNSPNLT 440 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~----p~p~v~W~k~~~~----------------------~~-----~~~~~~L~ 440 (1011)
.+...+.++.+.+|++++|.|.+.+. +.+.+.|+|++.. +. ......|.
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 95 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR 95 (331)
T ss_dssp -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence 34456677899999999999999876 4457999996421 11 11356799
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.+.+...+..+..+.|
T Consensus 96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l-------------------------------------------------- 125 (331)
T 3u83_A 96 LSRLELEDEGVYICEFATFPTGNRESQLNL-------------------------------------------------- 125 (331)
T ss_dssp ECSCCGGGCEEEEEEEEEETTEEEEEEEEE--------------------------------------------------
T ss_pred EcccCcccCcEEEEEEEecCCCccEEEEEE--------------------------------------------------
Confidence 999999999999999654323333334444
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceee--cCCceEEEcCC---CcEEEEEE-EecCCCCeEEEEecCCcee-----ecC
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFR--ARPYSVQVDRG---AGVNLLCD-VDGNPAPEITWIHEDSDKV-----VGN 589 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~--~~p~~~~v~~G---~~~~l~C~-~~g~p~p~v~W~k~~~~~~-----~~~ 589 (1011)
.|..+|.+. ..+....+.+| +.++|.|. +.+.|.+.+.|++++.... ...
T Consensus 126 -------------------~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 186 (331)
T 3u83_A 126 -------------------TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186 (331)
T ss_dssp -------------------EEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECT
T ss_pred -------------------EEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECC
Confidence 444444442 24556778888 78999997 8999999999999743321 122
Q ss_pred C------CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeE
Q psy17146 590 S------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKV 661 (1011)
Q Consensus 590 ~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v 661 (1011)
+ ..|.|..+..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. ......+.+|+.++|.|.+.|.|.|..+
T Consensus 187 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i 265 (331)
T 3u83_A 187 NGTVTVISRYRLVPSREAHQQSLACIVNY-HMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265 (331)
T ss_dssp TSCEEEEEEEEECCCGGGTTCEEEEEEEE-TTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEE
T ss_pred CCcEEEEEEEEEEeccccCCCEEEEEEec-CCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEE
Confidence 2 3477777799999999999999 56778889999999999876 3345568899999999999999999339
Q ss_pred EEEECCeEecccCCCCeEEecCCcCccceeEEEEc-CCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 662 TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR-ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 662 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~-~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|++++..+.. ...+. .++|.|. ++..+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 266 ~W~~~~~~~~~----~~~~~--------~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 320 (331)
T 3u83_A 266 HWTTLNGSLPK----GVEAQ--------NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320 (331)
T ss_dssp EEEETTBSCCT----TEEEE--------TTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred EEEECCCcccc----cceec--------CcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence 99999988753 12221 2589999 9999999999999999999999999999864
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=260.62 Aligned_cols=243 Identities=14% Similarity=0.263 Sum_probs=161.3
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCc---ccCCCCcceEEeecCC---CceeEEEEeeccc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPH---RNLSGFDRYAMIGSDE---EGDYSLEIYPVML 99 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~---~~~~~~~r~~i~~~~~---~~~~~L~I~~v~~ 99 (1011)
..|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ..-....|+.+..+.. .+.++|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 45777899999999999999999987 44689999998543110 0011123666544321 4566899999999
Q ss_pred CCCceEEEEEEeCCCCCc-ceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceee
Q psy17146 100 DDDARYQCQVSTGILGEP-AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVM 176 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~-~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~ 176 (1011)
+|+|.|+|.+.+...... ...+..+.|.|...+.+|.+..+ ...+.+|+.+.|.|. +.+.|++ .++|+|++..+.
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~-~~g~p~~~~~v~W~k~g~~l~ 161 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCE-SHGFSPRDITLKWFKNGNELS 161 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEE-EEEEBSSCCEEEEEETTEECC
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEE-EeCccCCCcEEEEEECCEEcc
Confidence 999999999998643211 12335678999999888887744 467789999999999 5566654 999999998876
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEE--EEEeCCceEEEecCcceeecCce
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKL--LVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
...... ....+...+...+.|.|.....+|.|.|+|.|.|..+.. .......+ .+..+|.+.+.... +.+|+.
T Consensus 162 ~~~~~~-~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~---~~~G~~ 237 (327)
T 2wng_A 162 DFQTNV-DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQ 237 (327)
T ss_dssp CEEEEE-ECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC---CSSTTC
T ss_pred cccccc-ccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC---cCCCCc
Confidence 544322 222233455666789999888888999999999987763 22223333 44556655443322 445555
Q ss_pred EEEEEEcccCCCc-cEEEEEeCCc
Q psy17146 254 VRLYCKAEANPSH-MKYRWYINDQ 276 (1011)
Q Consensus 254 v~L~C~~~~~~~~-~~i~W~~~~~ 276 (1011)
++|.|.+.+.+++ ..+.|++||+
T Consensus 238 v~l~C~~~g~~p~~~~v~W~k~g~ 261 (327)
T 2wng_A 238 VNVTCQVRKFYPQRLQLTWLENGN 261 (327)
T ss_dssp CEEEEEEEEEBSSCEEEEEEETTE
T ss_pred EEEEEEEccccCCCcEEEEEECCe
Confidence 5555555543222 2444444444
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=274.28 Aligned_cols=268 Identities=16% Similarity=0.201 Sum_probs=200.6
Q ss_pred EEecceEeeCCCceEecCCCcEEEEeecC-------CCCCCceEEEeCCCce---------eeccCCcEEEEeeccCCCe
Q psy17146 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVD-------GNPAPEITWIHEDSDK---------VVGNSPNLTLLMTSDDLAG 450 (1011)
Q Consensus 387 V~~~P~~~~~p~~~~v~~G~~v~l~C~~~-------g~p~p~v~W~k~~~~~---------~~~~~~~L~I~~v~~~d~G 450 (1011)
....|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|+|++... +....+.|.|.+++.+|+|
T Consensus 15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 94 (339)
T 3o4o_C 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSG 94 (339)
T ss_dssp ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCE
T ss_pred chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCE
Confidence 34578899999999999999999999998 8999999999998652 2234678999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|..+ ..+..+.|.|.
T Consensus 95 ~Y~C~~~n~~g-~~~~~~~l~V~--------------------------------------------------------- 116 (339)
T 3o4o_C 95 TYVCTTRNASY-CDKMSIELRVF--------------------------------------------------------- 116 (339)
T ss_dssp EEECCEEETTE-EEEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEEEECCcc-eEEEEEEEEEE---------------------------------------------------------
Confidence 99999997532 33344444443
Q ss_pred CCCcccEEEEEEecceee--cCCceEEEcCCCcEEEEEE-----EecCCCCeEEEEecCCceeec--------CCCcEEE
Q psy17146 531 GKSEDSETLDVTYGPRFR--ARPYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDSDKVVG--------NSPNLTL 595 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~--~~p~~~~v~~G~~~~l~C~-----~~g~p~p~v~W~k~~~~~~~~--------~~~~L~I 595 (1011)
.+|... .......+.+|+.+.|.|. +.+.|.+.+.|+|++..+... ..+.|.|
T Consensus 117 ------------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i 184 (339)
T 3o4o_C 117 ------------ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV 184 (339)
T ss_dssp ------------CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEE
T ss_pred ------------cCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEE
Confidence 222211 1122346789999999999 889999999999998654322 2358999
Q ss_pred eecCCCCCEEEEEEEEecCCC---ceeeEEEEEEcC-----CCeeecC-CceeeecCCcEEEEEEE---EecC-CCCeEE
Q psy17146 596 LMTSDDLAGRYYCKASVMGFP---EVGAEATVYLKG-----RPTIISH-RTQFGIPGDTARVECSA---FSIP-PPEKVT 662 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~-----~P~i~~~-~~~~v~~G~~v~L~C~~---~g~p-~p~~v~ 662 (1011)
.++..+|+|.|+|.|.|...+ ..+..+.|.|.. +|.|..+ ....+..|+.++|.|.+ .|.| .+ .+.
T Consensus 185 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~-~v~ 263 (339)
T 3o4o_C 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLW 263 (339)
T ss_dssp SSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSC-EEE
T ss_pred cccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCc-eEE
Confidence 999999999999999994222 457778888864 5677644 45678899999999999 8999 56 999
Q ss_pred EEECCeEecccC-------CCCeEEecCCcCccceeEEEEcCCCCCCC-EEEEEEEEcCCCCeEEEEEEEec
Q psy17146 663 WSYRGEEIGVGS-------SDDYSVLEDPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+++|..+.... ..++.+..+ ......+.|.|.++..+|+ |.|+|.|.|.+|++++.+.+.+.
T Consensus 264 W~~~g~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 264 WTANDTHIESAYPGGRVTEGPRQEYSEN-NENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp EESSSSCSSSSSCSSSCEECCCEECCCS-SSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred EEECCeecccccccccceecceEEeccc-CceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 999998875321 122222221 0001133899999999998 99999999999999988877653
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=263.62 Aligned_cols=262 Identities=15% Similarity=0.218 Sum_probs=193.3
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
+..+.+|+.++|.|.+.+.++...+.|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|..|.....+.|
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~~g~~~~~~~l 93 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKL 93 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCST-TCSCEEEEEESSSCEEEEEECC
T ss_pred eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcc-cCeEEEEEEECCCCcEEEEEEE
Confidence 36788999999999999884334999999999987542 2368999999998 9999999999999987777777
Q ss_pred EEEecceEeeCCCceEecCCCcEEEEeecCC----------CCCCceEEEeCCCceeec---------cCCcEEEEeecc
Q psy17146 386 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG----------NPAPEITWIHEDSDKVVG---------NSPNLTLLMTSD 446 (1011)
Q Consensus 386 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g----------~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~ 446 (1011)
.|...|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....|.|.+++.
T Consensus 94 ~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 173 (317)
T 2y25_A 94 VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 173 (317)
T ss_dssp STHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCG
T ss_pred EEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCc
Confidence 7766665555555566778888888888877 789999999998654311 122399999999
Q ss_pred CCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeec----cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCC
Q psy17146 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS----HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~ 522 (1011)
+|+|.|+|.|.|..+ .....+.+.+........ .....
T Consensus 174 ~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~~~~~~~~~~~~~~------------------------------------- 215 (317)
T 2y25_A 174 NDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAA------------------------------------- 215 (317)
T ss_dssp GGCEEEEEEEECSSC-EEEEEEEECHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccCeeEEEEEEeCCc-eEEEEEEEeeeeccccchhhcccCCcc-------------------------------------
Confidence 999999999998432 333344443321000000 00000
Q ss_pred ceEEEcCCCCCcccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC----------CC
Q psy17146 523 DYSVHNDVGKSEDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------SP 591 (1011)
Q Consensus 523 ~y~~~n~~G~~~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~----------~~ 591 (1011)
+.....|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ..
T Consensus 216 ----------------~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~ 279 (317)
T 2y25_A 216 ----------------IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279 (317)
T ss_dssp ----------------HHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEE
T ss_pred ----------------cCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEE
Confidence 0000123333 34667889999999999999999999999999986543211 13
Q ss_pred cEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..|
T Consensus 280 ~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 280 YFTINGVSTADSGKYGLVVKN-KYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEEEBSCCSTTCEEEEEEEEE-TTEEEEEEEEEEEECC
T ss_pred EEEECCCCHHHCEEEEEEEEe-CCCeEEEEEEEEEEcC
Confidence 899999999999999999999 6788888898888754
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=258.05 Aligned_cols=269 Identities=19% Similarity=0.189 Sum_probs=179.5
Q ss_pred eeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEE
Q psy17146 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCK 455 (1011)
Q Consensus 381 ~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~ 455 (1011)
..+...+..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|++.... ......|.|.+++.+|+|.|+|.
T Consensus 15 ~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 92 (316)
T 3vh8_G 15 KGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCR 92 (316)
T ss_dssp ---------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEE
T ss_pred cccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEE
Confidence 445556667899988887 578899999999999887 78999999987643 23467899999999999999999
Q ss_pred EEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcc
Q psy17146 456 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSED 535 (1011)
Q Consensus 456 a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~ 535 (1011)
|.|.... +..+..+.
T Consensus 93 a~~~~~~-----------------------------------------------------------------~~~~~~s~ 107 (316)
T 3vh8_G 93 GSHPHSP-----------------------------------------------------------------TGWSAPSN 107 (316)
T ss_dssp EBCSSSS-----------------------------------------------------------------SSBCCCCC
T ss_pred EEcCCCC-----------------------------------------------------------------cceecCCC
Confidence 9863211 00111122
Q ss_pred cEEEEEEe---cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCC
Q psy17146 536 SETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDL 602 (1011)
Q Consensus 536 ~~~l~V~~---~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d 602 (1011)
...|.|.. +|.+...+... +.+|+.++|.|.+. .+.+.+.|+|++..... ...+.|.|.+++.+|
T Consensus 108 ~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 185 (316)
T 3vh8_G 108 PVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185 (316)
T ss_dssp CEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGG
T ss_pred cEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhh
Confidence 23333322 24444444444 78899999999884 45678999999865421 234689999999999
Q ss_pred CEEEEEEEEecCC----CceeeEEEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 603 AGRYYCKASVMGF----PEVGAEATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~----~~~s~~~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
+|.|+|.|.|... ...+..+.|.|. .+|.+...+...+.+|+.++|.|.+. .|.+ .+.|+|+|..+....
T Consensus 186 ~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~- 262 (316)
T 3vh8_G 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYD-MYHLSREGGAHERRL- 262 (316)
T ss_dssp CEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCCS-EEEEEETTSSCCEEE-
T ss_pred CceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCCc-EEEEEECCCcCCCce-
Confidence 9999999999422 123666777775 45677655445688999999999997 4667 899999998765311
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC-----eEEEEEEEecC
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS-----DSVEIMLKPQK 727 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V~~ 727 (1011)
...... .......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|.+
T Consensus 263 -~~~~~~---~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 263 -PAVRKV---NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp -ECEECT---TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred -eceecc---CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence 111111 12234799999999 999999999998773 45666666643
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=252.15 Aligned_cols=275 Identities=18% Similarity=0.283 Sum_probs=183.7
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCce--------------ee---------ccCCcEEEEeeccC
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDK--------------VV---------GNSPNLTLLMTSDD 447 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~--------------~~---------~~~~~L~I~~v~~~ 447 (1011)
.|...|.++.+.+|+++.|.|.+.+. |.+.+.|+|++... .. .....|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 45667888999999999999999987 88999999987531 11 34567999999999
Q ss_pred CCeEEEEEEEEcCCcc----eeeEEEEEEcCCCe--eeccCcccccCCCeEEEEeEeeeCCCC-CeeEEeeCCeEeeccC
Q psy17146 448 LAGRYYCKASVMGFPE----VGAEATVYLKGRPT--IISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 448 d~G~Y~C~a~n~~~~~----~s~~~~v~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~i~~~~ 520 (1011)
|+|.|+|.|.|.++.. .+..+.|.|..+|. ....+...+.+|+.+.|.|.+.+.+++ ..+.|+++|..+....
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~ 164 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ 164 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence 9999999999975542 22345566654332 233344667899999999999998766 4999999998874221
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCC
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 600 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~ 600 (1011)
.. ...............|.|.....
T Consensus 165 ~~-------------------------------------------------------~~~~~~~~~~~~~s~L~i~~~~~ 189 (327)
T 2wng_A 165 TN-------------------------------------------------------VDPVGESVSYSIHSTAKVVLTRE 189 (327)
T ss_dssp EE-------------------------------------------------------EECSSCCSCEEEEEEEEEECCTT
T ss_pred cc-------------------------------------------------------cccccCCCceEEEEEEEEechhc
Confidence 00 00000000011123577777788
Q ss_pred CCCEEEEEEEEecCCC--ceeeEEEE--EEcCCCeeecCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCC
Q psy17146 601 DLAGRYYCKASVMGFP--EVGAEATV--YLKGRPTIISHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~--~~s~~~~l--~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~ 675 (1011)
+|+|.|+|.|.|.... .....+.+ .+..+|.+...... +.+|+.++|.|.+.|.|+ +..|+|+|||+.+.....
T Consensus 190 d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 268 (327)
T 2wng_A 190 DVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA 268 (327)
T ss_dssp GGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC
T ss_pred CcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc
Confidence 8899999999994222 23344444 45778888743322 789999999999999654 447999999999875322
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEE
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIML 723 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l 723 (1011)
..+....+ ......+.|.|.++..+|.|.|+|.|.|..|.. ++++.+
T Consensus 269 ~~~~~~~~-g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~ 316 (327)
T 2wng_A 269 STVTENKD-GTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL 316 (327)
T ss_dssp CSCEECTT-SCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred CceEECCC-CcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence 22222111 000123679999999999999999999999965 444444
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=252.22 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=191.6
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeec---CCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV---PAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l---~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
...+.+|+.++|.|.+.+ .+.|++++... ........|.|.+++.. |+|.|+|.+.|..|..+..+.|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~~~~~~~~~~l~V~ 86 (289)
T 3ejj_X 13 ELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLDPESPGSTLTTRNATFK-NTGTYRCTELEDPMAGSTTIHLYVK 86 (289)
T ss_dssp EEEECTTCCEEEEEECSS-----CCEEECSCSSSSEECCCSSCCEEEESSCCGG-GCEEEEEECCC-----CEEEEEEEC
T ss_pred eEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEeccCCccEEEEeeeccc-cCEEEEEEEeccCCcceeEEEEEEe
Confidence 456889999999999986 49999887543 22356689999999998 9999999999998888889999999
Q ss_pred ecce-EeeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCCce-------eeccCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 389 YGPR-FRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 389 ~~P~-~~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.+|. +...+....+.+|+.+.|.|.+.+.|.+. +.|++.+... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 87 ~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~ 166 (289)
T 3ejj_X 87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN 166 (289)
T ss_dssp CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeC
Confidence 8776 67777888999999999999999877765 9998754322 2344677999999999999999999964
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.....+..+.|.|...+
T Consensus 167 ~~~~~~~~~~l~V~~~~--------------------------------------------------------------- 183 (289)
T 3ejj_X 167 GRESTSTGIWLKVNRVH--------------------------------------------------------------- 183 (289)
T ss_dssp TEEEECCCEEEEEESSC---------------------------------------------------------------
T ss_pred CCccccccEEEEEEECC---------------------------------------------------------------
Confidence 43333334444332100
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceee-----------cCCCcEEEeecCCCCCEEEE
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.. ...+.|.|.++..+|+|.|+
T Consensus 184 --~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 261 (289)
T 3ejj_X 184 --PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261 (289)
T ss_dssp --CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEE
T ss_pred --CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEE
Confidence 04567777777788889999999999998 79999999999854421 12468999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCe
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~ 631 (1011)
|.|.| ..|..+.++.|.+..++.
T Consensus 262 C~a~N-~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 262 CVASN-DVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEEC-SSCEEEEEEEEECC----
T ss_pred EEEEc-CCCCccccEEEEEEeccc
Confidence 99999 788999999999977664
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=265.70 Aligned_cols=252 Identities=18% Similarity=0.234 Sum_probs=127.3
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
..+..+.+|+.++|.|.+.+.++...+.|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|. |..+..+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~-~~~~~~~~l 92 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHE-DSGAYSCRQRLT-QRVLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccc-cCEEEEEEEEeC-CeEEEEEEE
Confidence 3567899999999999999874334999999999886532 3568999999998 999999999998 777778888
Q ss_pred EEEecc----------------------eEeeC----CCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------
Q psy17146 386 DVTYGP----------------------RFRAR----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------- 432 (1011)
Q Consensus 386 ~V~~~P----------------------~~~~~----p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~------- 432 (1011)
.|...| .+... +....+.+|+.+.|.|.+.|.|.+.+.|+|++....
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 172 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence 887643 22211 234678899999999999999999999999985432
Q ss_pred ---eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEE
Q psy17146 433 ---VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509 (1011)
Q Consensus 433 ---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W 509 (1011)
......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|...+.
T Consensus 173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~-------------------------------- 219 (334)
T 1ry7_B 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSP-------------------------------- 219 (334)
T ss_dssp CCCCTTTTEEEECSCCGGGCCCEEEEEEETTE-EEEEEEEEEEECCCC--------------------------------
T ss_pred eecccceEEEEECCCCcccCEEEEEEEEeCCC-CEEEEEEEEEecCCC--------------------------------
Confidence 12345799999999999999999998543 233344444422110
Q ss_pred eeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec-CCceEEEcCCCcEEEEEEEecCCCCeEEEEe----cCCc
Q psy17146 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNPAPEITWIH----EDSD 584 (1011)
Q Consensus 510 ~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k----~~~~ 584 (1011)
.+|.+.. .|....+.+|+.++|.|.+.|.|.|.+.|+| +|..
T Consensus 220 ---------------------------------~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~ 266 (334)
T 1ry7_B 220 ---------------------------------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 266 (334)
T ss_dssp ---------------------------------SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCS
T ss_pred ---------------------------------CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcc
Confidence 0233332 3567789999999999999999999999999 5533
Q ss_pred eeec------------------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 585 KVVG------------------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 585 ~~~~------------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
+... ....|.|.++..+|+|.|+|.|.| ..|.....+.|.|..+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 267 VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN-SIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp BCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEE-SSCCEEEEEEEEEECSC
T ss_pred ccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeC-CCCeEEEEEEEEEEECC
Confidence 2211 113799999999999999999999 67888889999997654
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=252.01 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=176.3
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
..+|.|...|. ..+.+|++|+|.|.+.+..+.+.|+|++..+..... ......+|.|.+++.+|+|.
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------------~~~~~~~L~I~~v~~~D~G~ 88 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFH------------GRIFQESFNMSPVTTAHAGN 88 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHHH------------HCCBSSCEEECSCCGGGCEE
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCCCceEEEEeCCCccceeec------------CCcceEEEEECCCCcccCeE
Confidence 45688999988 678899999999999988789999999976532110 01123479999999999999
Q ss_pred EEEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.... .....+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +. .+.+.+.|+|++..+........
T Consensus 89 Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~-~~-~~~~~~~w~k~g~~~~~~~~~~~ 166 (316)
T 3vh8_G 89 YTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCW-SD-IMFEHFFLHKEGISKDPSRLVGQ 166 (316)
T ss_dssp EEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEE-ES-SCCSEEEEEETTCCSCCEEEECE
T ss_pred EEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEc-CC-CCCcEEEEEECCCccccceeeee
Confidence 99999864321 12335667888998877677766544445889999999999 43 45679999999887644222111
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEEEeCC-ceEEEecCcceeecCceEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT---YKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCK 259 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P-~~~~~~~~~~~v~~g~~v~L~C~ 259 (1011)
.. . ......|.|.+++.+|+|.|+|.|.|..|.. ..+..+.|.|...+ ...+.......
T Consensus 167 ~~--~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~------------ 229 (316)
T 3vh8_G 167 IH--D---GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK------------ 229 (316)
T ss_dssp EE--T---TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSC------------
T ss_pred ec--C---CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCe------------
Confidence 00 0 1234689999999999999999999987742 22455566665422 12222222223
Q ss_pred cccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEE
Q psy17146 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWY 339 (1011)
Q Consensus 260 ~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~ 339 (1011)
+.+|+.++|.|.+.. +. ..+.|+
T Consensus 230 -------------------------------------------------------v~~G~~v~L~C~~~~-~~-~~~~W~ 252 (316)
T 3vh8_G 230 -------------------------------------------------------VQAGESVTLSCSSRS-SY-DMYHLS 252 (316)
T ss_dssp -------------------------------------------------------CCTTSCCEEEEEESS-CC-SEEEEE
T ss_pred -------------------------------------------------------ecCCCcEEEEEECCC-CC-cEEEEE
Confidence 445555555555542 22 256666
Q ss_pred ECCeecCC---------CcCccEEEEeecccccCCcEEEEEEEcCCcc-----ceeeEEEEEEecc
Q psy17146 340 INDQPVPA---------AASATELYLTNITRHQHDSIVKCEVHNDVGK-----SEDSETLDVTYGP 391 (1011)
Q Consensus 340 k~g~~l~~---------~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~-----~~~s~~l~V~~~P 391 (1011)
|+|..+.. ......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus 253 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~---D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 253 REGGAHERRLPAVRKVNRTFQADFPLGPAT---HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp ETTSSCCEEEECEECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred ECCCcCCCceeceeccCCceeEEEEcCCcC---CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 66554432 1223688999997 999999999997663 3567777777665
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=245.00 Aligned_cols=243 Identities=21% Similarity=0.307 Sum_probs=183.8
Q ss_pred CCcccccCCcEEEEEEeec-CCCc-cEEEEEECCeecCCC--cCccEEEEeec---ccccCCcE--EEEEEEcCCcccee
Q psy17146 311 GSNRLVEGTDVRLYCKAEA-NPSH-MKYRWYINDQPVPAA--ASATELYLTNI---TRHQHDSI--VKCEVHNDVGKSED 381 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~-~p~~-~~i~W~k~g~~l~~~--~~~~~L~I~~~---~~~~d~G~--Y~C~a~n~~g~~~~ 381 (1011)
.+..+.+|+.++|.|.+.+ .|.+ ..+.|+|+|..+... ..+..+.+..+ ... |+|. |+|.|.|..|..+.
T Consensus 11 ~~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~-d~g~g~Y~C~a~n~~~~~~~ 89 (265)
T 2oz4_A 11 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE-DEGTQRLTCAVILGNQSQET 89 (265)
T ss_dssp CCSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGG-GCEEEEEEEEEEETTEEEEE
T ss_pred cCceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccc-cCCcceEEEEEecCCCCcEE
Confidence 3457889999999999999 6643 599999999988653 23345666555 555 7774 99999999999888
Q ss_pred eEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcC
Q psy17146 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMG 460 (1011)
Q Consensus 382 s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 460 (1011)
++.|.|...|.....+....+.+|+.+.|.|.+. |.+.++| ++.... ......|.|..+..+|+|.|+|.|.|..
T Consensus 90 ~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~ 165 (265)
T 2oz4_A 90 LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV 165 (265)
T ss_dssp EEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEEC
T ss_pred EEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCC
Confidence 9999998744322234566788999999999998 8999999 655442 2334668899999999999999998632
Q ss_pred CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 461 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 461 ~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
.+.... ......|.
T Consensus 166 ~g~~~~------------------------------------------------------------------~s~~~~l~ 179 (265)
T 2oz4_A 166 AGQLIH------------------------------------------------------------------KNQTRELR 179 (265)
T ss_dssp SSSEEE------------------------------------------------------------------EEEEEEEE
T ss_pred CCCccc------------------------------------------------------------------ccccEEEE
Confidence 211110 01233445
Q ss_pred EEecceeecC--CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 541 VTYGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 541 V~~~P~~~~~--p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
|..+|.+... |.+..+.+|+.++|.|.+.|.|.|.+.|+|++. .....+.|. .++.+|+|.|+|.|.| ..|..
T Consensus 180 V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~--~~~~~g~~~--~v~~~d~G~Y~C~a~N-~~G~~ 254 (265)
T 2oz4_A 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT--FPLPIGESV--TVTRDLEGTYLCRARS-TQGEV 254 (265)
T ss_dssp EEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT--EECCTTSCE--ECCGGGCEEEEEEEEE-TTEEE
T ss_pred EEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc--ccCCCCcEE--EeehhhCeEEEEEEEC-CCCcE
Confidence 6666666443 567889999999999999999999999999998 233334443 4888999999999999 67889
Q ss_pred eeEEEEEEcCC
Q psy17146 619 GAEATVYLKGR 629 (1011)
Q Consensus 619 s~~~~l~V~~~ 629 (1011)
+..+.|.|..|
T Consensus 255 ~~~~~l~V~~p 265 (265)
T 2oz4_A 255 TREVTVNVLSP 265 (265)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEecC
Confidence 99999998754
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=250.77 Aligned_cols=233 Identities=16% Similarity=0.201 Sum_probs=176.3
Q ss_pred EecCCCcEEEEeecCC-CCCC--ceEEEeCCCce---eeccCCcEEEEee---ccCCCeE--EEEEEEEcCCcceeeEEE
Q psy17146 401 QVDRGAGVNLLCDVDG-NPAP--EITWIHEDSDK---VVGNSPNLTLLMT---SDDLAGR--YYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 401 ~v~~G~~v~l~C~~~g-~p~p--~v~W~k~~~~~---~~~~~~~L~I~~v---~~~d~G~--Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.+|+.++|.|.+.| .|.+ .++|+|++..+ .......+.+..+ +.+|+|. |+|.|.|..+. .+..+.
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~~~ 92 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQT 92 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEEEE
Confidence 6889999999999988 7877 99999998543 2334556777666 7788885 99999975322 223333
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
| .|...|....
T Consensus 93 l---------------------------------------------------------------------~V~~~p~p~~ 103 (265)
T 2oz4_A 93 V---------------------------------------------------------------------TIYSFPAPNV 103 (265)
T ss_dssp E---------------------------------------------------------------------EEECCCCCEE
T ss_pred E---------------------------------------------------------------------EEeCCCCcee
Confidence 3 3333221111
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-ecCCCcEEEeecCCCCCEEEEEEEEecCCCcee---eEEEEE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG---AEATVY 625 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s---~~~~l~ 625 (1011)
.+.+..+.+|+.++|.|.+. |.+.++| +|..+. ....+.|.|..+..+|+|.|+|.|.|...|... ..+.|.
T Consensus 104 ~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~ 179 (265)
T 2oz4_A 104 ILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 179 (265)
T ss_dssp EESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred ecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEE
Confidence 23355678899999999998 8999999 665542 234567999999999999999999974445544 778899
Q ss_pred EcCCCeeec---CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 626 LKGRPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 626 V~~~P~i~~---~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|..+|.+.. +....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. .+ .| ..+..+|
T Consensus 180 V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p-~i~W~~~~~~~~~--------------~g---~~--~~v~~~d 239 (265)
T 2oz4_A 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLP--------------IG---ES--VTVTRDL 239 (265)
T ss_dssp EEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECC--------------TT---SC--EECCGGG
T ss_pred EEeCCccccccCCCccEEcCCCeEEEEeECccCCCC-eEEEEECCcccCC--------------CC---cE--EEeehhh
Confidence 999988863 346678999999999999999999 9999999983321 11 12 2377899
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.|.|.+|..+..+.|.|+.
T Consensus 240 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 240 EGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CeEEEEEEECCCCcEEEEEEEEEec
Confidence 9999999999999999999998853
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=259.35 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=162.1
Q ss_pred CCceeEEecCcEEEEEEEcC-C-----------CCeeEEeeCCeecCCcccCC---CCcceEEeecCCCceeEEEEeecc
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-K-----------TGVLQWTKDDFALGPHRNLS---GFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~-----------~~~v~W~k~~~~l~~~~~~~---~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.++.+.+|++|+|.|.+.+ + .+.+.|+|++........+. ...|+... ..+|.|.+++
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~~ 87 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE------KDVLWFRPTL 87 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE------TTEEEESSCC
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec------CCEEEEccCC
Confidence 57899999999999999986 2 37999999985332222222 22333332 1279999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe--eecCCeeeecCCCcEEEEEEc----cCCCCCcEEEEEeCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR--IVQGDTLYTTEDREIELECIS----ANGKPPAEITWIDGT 172 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~--i~~~~~~~v~eg~~v~L~C~~----~~g~P~~~i~W~k~~ 172 (1011)
.+|+|.|+|.+.|.. +..+..+.|+|..++.... +..+....+.+|+.+.|.|.+ ..+.|.+.++|+|++
T Consensus 88 ~~D~G~Y~C~a~n~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~ 163 (349)
T 4dep_C 88 LNDTGNYTCMLRNTT----YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163 (349)
T ss_dssp GGGCEEEEEEEECSS----CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETT
T ss_pred hhhCEEEEEEEecCC----ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCC
Confidence 999999999998853 3455668888887654221 122335577899999999973 267899999999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce--eEEEEEEEEEeC------CceEEEecC
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY--KVARLKLLVKYA------PKVQVSVIG 244 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~--~s~~v~v~v~~~------P~~~~~~~~ 244 (1011)
..+....++ ...+..|.|.+++.+|+|.|+|.|.|..+... .+..+.|.|... |.+. ....
T Consensus 164 ~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~-~~~~ 232 (349)
T 4dep_C 164 YKIQNFNNV----------IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH-SPND 232 (349)
T ss_dssp EECCSCSSE----------EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-----
T ss_pred EECCCccce----------eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEe-cCCC
Confidence 876432222 12224799999999999999999999874442 467777777653 3221 1111
Q ss_pred cc--eeecCceEEEEEEcccC---CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCC
Q psy17146 245 SN--RLVEGTDVRLYCKAEAN---PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGT 319 (1011)
Q Consensus 245 ~~--~v~~g~~v~L~C~~~~~---~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~ 319 (1011)
.. .+.+|+.++|.|.+.+. .+.+.+.|++++..+...... +....
T Consensus 233 ~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~------------------------------~~~~~ 282 (349)
T 4dep_C 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID------------------------------VTINE 282 (349)
T ss_dssp ------------CCCEEEEECCCTTCCCEEEEESSCC--------------------------------------CCCCE
T ss_pred ceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCc------------------------------ccccc
Confidence 11 44556666666666532 222455555555443221000 00000
Q ss_pred cEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCC-cEEEEEEEcCCccceeeEEEEEEe
Q psy17146 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD-SIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 320 ~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~-G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
. ...+..+ .......|.|.++..+ |+ |.|+|.|.|..|..+..+.|.|..
T Consensus 283 ~--------------~~~~~~~-----~~~~~~~L~i~~v~~~-d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 283 S--------------ISHSRTE-----DETRTQILSIKKVTSE-DLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp E--------------EECCTTC-----CEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred c--------------eeeecCC-----CcEEEEEEEEeeccHH-HcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 0 0000000 0012345999999998 99 999999999999998888888876
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=251.95 Aligned_cols=259 Identities=14% Similarity=0.183 Sum_probs=180.5
Q ss_pred ceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce---e-e-cc---CCcEEEEeeccCCCeEEEEEEEEcCCc
Q psy17146 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK---V-V-GN---SPNLTLLMTSDDLAGRYYCKASVMGFP 462 (1011)
Q Consensus 391 P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~---~-~-~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 462 (1011)
|.|.....+..+.+|++++|.|.+.|. ++|+|++... . . .. ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 76 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL 76 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence 345555567789999999999999875 9999998763 1 1 11 257999999999999999999975432
Q ss_pred c--eeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 463 E--VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 463 ~--~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
. .+..+.|.+..+..
T Consensus 77 ~~~~~~~~~v~v~~p~~--------------------------------------------------------------- 93 (289)
T 3mjg_X 77 ETDERKRLYIFVPDPTV--------------------------------------------------------------- 93 (289)
T ss_dssp --CCCEEEEEECCCTTC---------------------------------------------------------------
T ss_pred CcCcEEeEEEEEECCCc---------------------------------------------------------------
Confidence 1 22333333321110
Q ss_pred EEecceeecCCc--eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----CCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 541 VTYGPRFRARPY--SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----NSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 541 V~~~P~~~~~p~--~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|.+...+. ...+.+|+.+.|.|.+. .|.+.++|++++...... ....+. ..+|+|.|+|.|.|..
T Consensus 94 ----~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~ 164 (289)
T 3mjg_X 94 ----GFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGD 164 (289)
T ss_dssp ----CBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETT
T ss_pred ----CcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCee----eeccCcEEEEEEEeCC
Confidence 11111111 26789999999999999 788999999986332221 111222 4679999999999854
Q ss_pred CCceeeEEEEEEcC--CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 615 FPEVGAEATVYLKG--RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~--~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
....+..+.|.|.. +|.+. .+....+.+|++++|.|.+.|.|.| .+.|+++++...... ...............+
T Consensus 165 ~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (289)
T 3mjg_X 165 REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLV-EPVTDFLLDMPYHIRS 242 (289)
T ss_dssp EEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSB-EEEEECTTSSSSCCC-CCEEEESCTTTTEEEE
T ss_pred ceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCc-ceEEEcCCccCCCcc-cccccccCCcceEEEE
Confidence 45556666777765 66665 3355679999999999999999999 999999877543211 1111111111123468
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 243 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp EEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence 999999999999999999999999999999998853
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=258.44 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=191.5
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC--------cCccEEEEeecccccCCcEEEEEEEcCCccceeeE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSE 383 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~--------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~ 383 (1011)
...+.+|+.++|.|.+.+.+....+.|+|+|..+... .....|.|.+++.+ |+|.|+|.|.|..|......
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g~~~~~~ 92 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKI 92 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGG-GCSCCEECCCSSSCCCCEEC
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChh-hCEEEEEEEeCCceEEEEEE
Confidence 4678999999999999999844499999998654321 23458999999998 99999999999988776666
Q ss_pred EEEEEe-cceEeeCC---CceEecCCCcEEEEeec------CCCCCCceEEEeCCCce------eeccCCcEEEEeeccC
Q psy17146 384 TLDVTY-GPRFRARP---YSVQVDRGAGVNLLCDV------DGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 384 ~l~V~~-~P~~~~~p---~~~~v~~G~~v~l~C~~------~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~ 447 (1011)
.+.+.. +|.+...+ ....+.+|+++.|.|.+ .|.|.+.+.|+|++..+ .......|.|.+++.+
T Consensus 93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~ 172 (315)
T 1itb_B 93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 172 (315)
T ss_dssp CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGG
T ss_pred EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceeh
Confidence 666543 45444333 23578899999999998 89999999999998654 2345678999999999
Q ss_pred CCeEEEEEEE-EcCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCce
Q psy17146 448 LAGRYYCKAS-VMGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524 (1011)
Q Consensus 448 d~G~Y~C~a~-n~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y 524 (1011)
|+|.|+|.|. |..+...+ ..+.+.+..+.
T Consensus 173 d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~------------------------------------------------ 204 (315)
T 1itb_B 173 HRGNYTCHASYTYLGKQYPITRVIEFITLEEN------------------------------------------------ 204 (315)
T ss_dssp GCEEEEEEEEEEETTEEEEEEEEEEEEEECCC------------------------------------------------
T ss_pred hCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC------------------------------------------------
Confidence 9999999999 55443322 22222211000
Q ss_pred EEEcCCCCCcccEEEEEEecceeecCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------------
Q psy17146 525 SVHNDVGKSEDSETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------- 588 (1011)
Q Consensus 525 ~~~n~~G~~~~~~~l~V~~~P~~~~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------- 588 (1011)
...+|.+...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+...
T Consensus 205 ----------------~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~ 268 (315)
T 1itb_B 205 ----------------KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268 (315)
T ss_dssp ----------------CCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSS
T ss_pred ----------------CCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccC
Confidence 0135666666654 57899999999999999999999999988543221
Q ss_pred ------CCCcEEEeecCCCC-CEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 589 ------NSPNLTLLMTSDDL-AGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 589 ------~~~~L~I~~v~~~d-~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
..+.|+|.++..+| +|.|+|.|.| ..|..+..+.|.|+.
T Consensus 269 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N-~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKN-THGIDAAYIQLIYPV 314 (315)
T ss_dssp CGGGEEEEEEEEESSCCGGGGTSCEEEEEEC-TTCCEEEEEEEECCC
T ss_pred CCceeEEEEEEEEeecCHHHcCCceEEEEec-CCCceeEEEEEEecC
Confidence 12389999999999 9999999999 688888999888864
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=258.29 Aligned_cols=380 Identities=14% Similarity=0.150 Sum_probs=219.8
Q ss_pred eCCcccccCCcEEEEEEeecCCC-c--cEEEEEEC--Ceec------------------CCC--------cCccEEEEee
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPS-H--MKYRWYIN--DQPV------------------PAA--------ASATELYLTN 358 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~-~--~~i~W~k~--g~~l------------------~~~--------~~~~~L~I~~ 358 (1011)
.....+.+|+.++|.|.+.+.+. . ..+.|||. |..+ ... .....|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 45678899999999999987542 1 48999985 2211 000 1135899999
Q ss_pred cccccCCcEEEEEEEcCCc-----------c--ceeeEEEEEEe----cceEe-eCCCceEecCCCcEEEEeecCCC-CC
Q psy17146 359 ITRHQHDSIVKCEVHNDVG-----------K--SEDSETLDVTY----GPRFR-ARPYSVQVDRGAGVNLLCDVDGN-PA 419 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g-----------~--~~~s~~l~V~~----~P~~~-~~p~~~~v~~G~~v~l~C~~~g~-p~ 419 (1011)
++.+ |+|.|.|.+.+..+ . ....+.|.|.. +|.+. ..+......+|+.+.|.|.+.|. |.
T Consensus 87 v~~~-Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 87 MSAA-DTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred CCHH-HCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9998 99999999988642 1 12446777774 45443 22222212346899999999886 76
Q ss_pred C-ceEEEeCCCcee-------eccCC------cEEEEeeccCCCeEEEEEEEEcCCcceeeE----------EEEEEcCC
Q psy17146 420 P-EITWIHEDSDKV-------VGNSP------NLTLLMTSDDLAGRYYCKASVMGFPEVGAE----------ATVYLKGR 475 (1011)
Q Consensus 420 p-~v~W~k~~~~~~-------~~~~~------~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~----------~~v~v~~~ 475 (1011)
+ .++|++++.... ....+ .|.|.....+ .|.|+|.|.|..+...... +.|.+..+
T Consensus 166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p 244 (512)
T 1zvo_C 166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ 244 (512)
T ss_pred ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence 5 899999764311 11112 3677766666 9999999999654322111 01111111
Q ss_pred CeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeecc-----CCCceEEEcCCCCCcccEEEEEEeccee-ec
Q psy17146 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG-----SSDDYSVHNDVGKSEDSETLDVTYGPRF-RA 549 (1011)
Q Consensus 476 p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~-----~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~ 549 (1011)
|.+.... .+ + ...-...++| .+... +.+ ++ .++.+... +.......+|.+ ..
T Consensus 245 p~~~~~~-----~~--------~-----~~~~~~~~~g-~~~~~~~~~~~~~-~~-h~~~~~~~-~~~~~~~~~p~v~~~ 302 (512)
T 1zvo_C 245 PQAEGSL-----AK--------A-----TTAPATTRNT-GRGGEEKKKEKEK-EE-QEERETKT-PECPSHTQPLGVYLL 302 (512)
T ss_pred Cchhccc-----cc--------c-----ccCchhhccC-cccccceeccCCc-cc-ccccCccc-ccCCCCCCCCEEEEE
Confidence 1100000 00 0 0000000111 00000 000 00 00000000 000001234544 33
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCC--eEEEEecCCcee---------ecCC------CcEEEeecCCCCCEEEEEEEEe
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV---------VGNS------PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~---------~~~~------~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.|....+.+|+.++|.|.+.|+.++ .|+|+|+|.... ...+ +.|.|..+..+|+|.|+|+|.|
T Consensus 303 ~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n 382 (512)
T 1zvo_C 303 TPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNH 382 (512)
T ss_pred CCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEe
Confidence 4555567789999999999997443 899999986432 0112 2489999999999999999999
Q ss_pred cCCCceeeEEEEEE----cCCCeeec-CCceeeecCCcEE-EEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 613 MGFPEVGAEATVYL----KGRPTIIS-HRTQFGIPGDTAR-VECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V----~~~P~i~~-~~~~~v~~G~~v~-L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
.........+.+.. ..+|.+.. +... .|+.++ |.|.+.|.+ +.+.|+|+|||.++.........+..+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~-- 457 (512)
T 1zvo_C 383 PSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQ-- 457 (512)
T ss_pred CCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeEC--
Confidence 43322222222211 34676652 2222 789999 999999964 445799999999986421110011111
Q ss_pred Ccc----ceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 686 KEG----IKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 ~~~----~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++ ..+.|.|.....+|.|.|+|.|.|......
T Consensus 458 ~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~ 494 (512)
T 1zvo_C 458 PGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTL 494 (512)
T ss_pred CCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCc
Confidence 122 235788888888889999999999977543
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=253.30 Aligned_cols=244 Identities=15% Similarity=0.243 Sum_probs=185.5
Q ss_pred CcccccCCcEEEEEEeecCC--------CccEEEEEECCeecCCC---cCccEEEEeecccccCCc-EEEEEEEcCCccc
Q psy17146 312 SNRLVEGTDVRLYCKAEANP--------SHMKYRWYINDQPVPAA---ASATELYLTNITRHQHDS-IVKCEVHNDVGKS 379 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p--------~~~~i~W~k~g~~l~~~---~~~~~L~I~~~~~~~d~G-~Y~C~a~n~~g~~ 379 (1011)
...+.+|+.+.|.|.+.+.+ +...+.|+|++..+... .....|.|.+++.+ |+| .|+|.|.|..|..
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~-D~Gs~Y~C~a~n~~g~~ 116 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSN-DSHRRYLCTVTTKNGDC 116 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGG-GGGCCEEEEEECTTSCE
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChH-hCCCcEEEEEEeCCCce
Confidence 34689999999999999853 22499999999876432 33678999999998 999 9999999998875
Q ss_pred eeeEEEEEE-ecceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEeCCCcee------eccCCcEEEEeeccCCCeE
Q psy17146 380 EDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 380 ~~s~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~ 451 (1011)
.....+.|. .+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+|++.... ......|.|.+++.+|+|.
T Consensus 117 ~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~ 196 (329)
T 3oq3_B 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGR 196 (329)
T ss_dssp EEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEE
T ss_pred eeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEE
Confidence 544433443 355544433344577899999999999999 89999999986542 2236789999999999999
Q ss_pred EEEEEEEc--CC-cce--eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEE
Q psy17146 452 YYCKASVM--GF-PEV--GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526 (1011)
Q Consensus 452 Y~C~a~n~--~~-~~~--s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~ 526 (1011)
|+|.|.|. .+ ... +..+.|.
T Consensus 197 Y~C~a~n~~~~g~~~~~~s~~~~l~------------------------------------------------------- 221 (329)
T 3oq3_B 197 YDCYVHYDDVRIKNDIVVSRCKILT------------------------------------------------------- 221 (329)
T ss_dssp EEEEEEECCTTSSSCEEEEEEEEEE-------------------------------------------------------
T ss_pred EEEEEEecccCCCceeEEEeeEEEE-------------------------------------------------------
Confidence 99999984 22 211 1223333
Q ss_pred EcCCCCCcccEEEEEEecc----eeecCCceEEEcCCCcEEEEEEEecCC---CC-eEEEEecCCceeec----------
Q psy17146 527 HNDVGKSEDSETLDVTYGP----RFRARPYSVQVDRGAGVNLLCDVDGNP---AP-EITWIHEDSDKVVG---------- 588 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P----~~~~~p~~~~v~~G~~~~l~C~~~g~p---~p-~v~W~k~~~~~~~~---------- 588 (1011)
|..+| .+. .|....+.+|+.++|.|.+.|.| .+ .+.|+|++..+...
T Consensus 222 --------------V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~ 286 (329)
T 3oq3_B 222 --------------VIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286 (329)
T ss_dssp --------------EECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEE
T ss_pred --------------EECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecc
Confidence 33333 222 56678899999999999999998 77 88999998763211
Q ss_pred ----CCCcEEEeecCCCCCE-EEEEEEEecCCCceeeEEEEEEc
Q psy17146 589 ----NSPNLTLLMTSDDLAG-RYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 589 ----~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
..+.|+|.++..+|+| .|+|.|.| ..|..+..+.|.|+
T Consensus 287 ~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N-~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 287 SGGITEATLYFENVTEEYIGNTYTCRGHN-YYFDKTLTTTVVLE 329 (329)
T ss_dssp ETTEEEEEEEESSCCGGGTTCEEEEEEEC-SSCEEEEEEEEEEC
T ss_pred cCceeEeEEEEEeccHHHCCCcEEEEEEe-cCCceEEEEEEEeC
Confidence 2467999999999999 99999999 67888888888763
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=245.23 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=184.4
Q ss_pred CCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+..+.+.+|++++|.|.... +.+.+.|+|++..+.. ..|+.+..+ .+..+|+|.+++.+|+|.|+|.+.+
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~------~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~~~n 79 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED------SPRLEVESK--GNKTKMTFKDLGMDDLGIYSCDVTD 79 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT------CTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEESS
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC------CCCEEEEEe--CCEEEEEECcCCccCCEEEEEEEEe
Confidence 34678889999999999874 6679999999987642 357777653 3456899999999999999999988
Q ss_pred CCCCCcceeeeEEEEEEEc------------CCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 112 GILGEPAIRSRFATLTVLV------------PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V~~------------~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
..+. .....|.|.. .|.... .......+.+|+.+.|.|.+..+.|.+.+.|+|++..+..+.
T Consensus 80 ~~g~-----~~s~~l~v~~~~~~~~~~~~~~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~ 153 (312)
T 2y23_A 80 TDGI-----ASSYLIDEEELKRLLALSHEHKFPTVPV-KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153 (312)
T ss_dssp SCCC-----CEEEEECHHHHHHHHHHHHHHHSCBCCE-EEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS
T ss_pred CCCc-----EEEEEEEEeeeeeeecccccCCCCcccc-ccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC
Confidence 5431 2234555542 333222 122267788999999999954489999999999999887765
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE-------------------EeCCceEE
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-------------------KYAPKVQV 240 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v-------------------~~~P~~~~ 240 (1011)
++......... ..+|.|.+++.+|+|.|+|.|.+..+. ....+.+.. ..+|.+..
T Consensus 154 ~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 227 (312)
T 2y23_A 154 KYKMHIDRNTG----IIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227 (312)
T ss_dssp SCEEEEETTTT----EEEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred cEEEEEccCCC----EEEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccchhhccCCceee
Confidence 55433332221 257999999999999999999864332 222222210 00121110
Q ss_pred EecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCc
Q psy17146 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTD 320 (1011)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~ 320 (1011)
. ....+.+|+.
T Consensus 228 ~---------------------------------------------------------------------~~~~v~~G~~ 238 (312)
T 2y23_A 228 Y---------------------------------------------------------------------LSWEVTGECN 238 (312)
T ss_dssp E---------------------------------------------------------------------EEEEEETTTE
T ss_pred c---------------------------------------------------------------------ceEEEeCCCE
Confidence 0 0123556677
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
+.|.|.+.+.|.+..+.|+|+|..+..+ .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.
T Consensus 239 ~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGG-GCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHH-HCEEEEEEEEcCCCceeeeeEEEec
Confidence 7777777776655567777777766521 22368999999998 9999999999999999888887653
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=273.44 Aligned_cols=452 Identities=13% Similarity=0.112 Sum_probs=251.8
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCcccee-eEEEEEE---ecc
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSED-SETLDVT---YGP 391 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~---~~P 391 (1011)
...+.++|.|.+.|.|.+ .+.|.|+|..+.. -....+.|..+......+.|+|.+.|..|.... .+.+.+. .+|
T Consensus 89 ~~~g~l~v~c~~~g~P~p-~i~W~k~g~~~~~-~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p 166 (731)
T 2v5y_A 89 SPPGLLNVYVKVNNGPLG-NPIWNISGDPTRT-WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP 166 (731)
T ss_dssp SCSEEEEEEEEETTCCCC-SEEEEECCCCCSS-CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred CCcceEEEEEecCCCCcc-ceeEEEeCCcCCc-eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence 345689999999999987 8999999988754 344566676543332457999988888886532 2222221 367
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCCCCCceE-EE--eCCCceeec---------cCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT-WI--HEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~-W~--k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.|. .+.+..+.+|++++|.|.+.|.|.|.+. |+ +++..+... ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 167 ~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~ 245 (731)
T 2v5y_A 167 HFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245 (731)
T ss_dssp EEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEET
T ss_pred ccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECC
Confidence 776 5678899999999999999999999998 88 566543211 1357999999999999999999997
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCC--CCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP--PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE 537 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~ 537 (1011)
.+...+..+.|.|..+|.....+.........+.+.|.....+ .++ .
T Consensus 246 ~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i--~----------------------------- 294 (731)
T 2v5y_A 246 GGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPI--V----------------------------- 294 (731)
T ss_dssp TEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCC--C-----------------------------
T ss_pred CCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCcc--E-----------------------------
Confidence 6655666677777776665443333223344455554432110 000 0
Q ss_pred EEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc---eeecCCCcEEEeecCCCCCEEEEEEEE--e
Q psy17146 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---KVVGNSPNLTLLMTSDDLAGRYYCKAS--V 612 (1011)
Q Consensus 538 ~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~---~~~~~~~~L~I~~v~~~d~G~Y~C~a~--n 612 (1011)
.-.|.|...+.. .......+++|.++...+.+.|+|.|. |
T Consensus 295 -----------------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N 339 (731)
T 2v5y_A 295 -----------------------------------AREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPG 339 (731)
T ss_dssp -----------------------------------EEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred -----------------------------------EEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEEEEEEecC
Confidence 002223322211 122345789999999999999999999 8
Q ss_pred c-CCCceeeEEEEEEcC--CCeeecCCce--eeecCCcEEEEEEEEecC---C---CCeEEEEECCeEecccCCCCeEEe
Q psy17146 613 M-GFPEVGAEATVYLKG--RPTIISHRTQ--FGIPGDTARVECSAFSIP---P---PEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 613 ~-~~~~~s~~~~l~V~~--~P~i~~~~~~--~v~~G~~v~L~C~~~g~p---~---p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
. +.+..+..+.+.... ||. .+... .......+.|.+...... . -..|.|...+.. ........
T Consensus 340 ~~G~s~~S~~~~~~t~~~~p~~--~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~----~~~~~~~~ 413 (731)
T 2v5y_A 340 EGGTGSPGPALRTRTKCADPMR--GPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGG----QEQVREEV 413 (731)
T ss_dssp TTCSCCBCCCEEEECCCCCCSC--CCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSS----SEEEEEEE
T ss_pred CCccccCCCcEEeeecCCCCCC--CCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCC----CCccceeE
Confidence 3 333333333332221 111 11111 122344566666542110 0 113444332210 00000000
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
..........+.|.++.+...+.|++.|.|..|... +..+.+... ...|
T Consensus 414 -~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~-----------------------------~~~P 462 (731)
T 2v5y_A 414 -SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTD-----------------------------EDLP 462 (731)
T ss_dssp -ECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECC-----------------------------CCCC
T ss_pred -EEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEcc-----------------------------CCCC
Confidence 001122346789999999999999999999999642 333333211 1122
Q ss_pred CCCC--CCcccccccccccccc-cCCCCCCCCcCcceeeecCcc----------------------------cccccccc
Q psy17146 762 PPPG--NGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------------------VSNVHLDY 810 (1011)
Q Consensus 762 ~~p~--~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------------------~p~~~Y~f 810 (1011)
.+|. .+.... ..+++.|+| ++.+.+++|++|.|+++.... .|++.|.|
T Consensus 463 ~~p~~~~~~~~~-~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 541 (731)
T 2v5y_A 463 GAVPTESIQGST-FEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSF 541 (731)
T ss_dssp CCCCTTTCEEEE-ETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEE
T ss_pred CCCCcceEEeee-cCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEE
Confidence 2332 333332 467899999 666667799999999875320 78889999
Q ss_pred ---c---CCCCCCCcccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 811 ---A---GHDSETGSESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 811 ---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
| .|.|.++...++|.+++|..++....... ..+.+...|+|+|| ...||++.+|+|+||+.+..
T Consensus 542 ~V~A~n~~G~g~~s~~~~~T~~~~P~~p~~~~~~~~--~~~~~si~l~W~pp--~~~~g~I~~Y~v~~~~~~~~ 611 (731)
T 2v5y_A 542 TIRASTAKGFGPPATNQFTTKISAPSMPAYELETPL--NQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERPR 611 (731)
T ss_dssp EEEEEETTEEEEEEEEEEECCCCCCCC-----------------------------------------------
T ss_pred EEEEEeCCccCCCcccEEEcCCCCCCCCCccccccc--ccCCceEEEEEeCC--CCCCCceEEEEEEEEecCCC
Confidence 5 78888887778899999988776543211 00233456699985 67789999999999987754
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=251.26 Aligned_cols=264 Identities=16% Similarity=0.223 Sum_probs=180.8
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...+.++.+.+|++++|.|.+.+. +.|++++.. +..+.. .....+|.|.+++.+|+|.|
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~-----------~~~~~~--~~~~~~L~i~~~~~~d~G~Y 66 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS---VEWDGPPSP-----------HWTLYS--DGSSSILSTNNATFQNTGTY 66 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC---CCBCCCCCS-----------SCEECC--BTTEEEEEESSCCGGGCSCE
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc---eEEccCCCC-----------ceEEec--cCceEEEEEcccccccCEEE
Confidence 47889999999999999999999999874 999976532 222221 23456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeee-ceeEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMS-NVRVT 182 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~-~~~~~ 182 (1011)
+|.+.+... ..+..+.|.|..++.+. +.....+.+.+|+.+.|.|.+ .+ |. +.+.|+++++.... ..++.
T Consensus 67 ~C~~~n~~~----~~~~~~~l~V~~~~~~~-~~~~~~~~v~~g~~v~l~C~~-~~-~~~~~~v~W~~~~~~~~~~~~~~~ 139 (292)
T 4dkd_C 67 RCTEPGDPL----GGSAAIHLYVKDPARPW-NVLAQEVVVFEDQDALLPCLL-TD-PVLEAGVSLVRVRGRPLMRHTNYS 139 (292)
T ss_dssp EECCCC--------CCEEECCEECCSSCCE-EESCSEEEEETTSCEECCEEE-SS-GGGGSSEEEEEGGGCCCCSSCCEE
T ss_pred EEEEccCCC----CcceEEEEEEcCccccc-cccCCeEEEcCCCcEEEeeeC-CC-CCcceeEEEEecCCCccccCCccc
Confidence 999987532 23667888888766433 444557788999999999994 44 44 78999998544433 33332
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe----CCceEEEecCcceeecCceEEEEE
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY----APKVQVSVIGSNRLVEGTDVRLYC 258 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~----~P~~~~~~~~~~~v~~g~~v~L~C 258 (1011)
...+ ..|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|.. +|.+... .....
T Consensus 140 --~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~-~~~~~----------- 197 (292)
T 4dkd_C 140 --FSPW-------HGFTIHRAKFIQSQDYQCSALMGGRKV-MSISIRLKVQKVIPGPPALTLV-PAELV----------- 197 (292)
T ss_dssp --CCSS-------SCCEETTCCGGGCSEEEEEECSTTSCE-ECCCEEEEEECCCCSSCEEEEE-SSCBC-----------
T ss_pred --ccCC-------ceEEECCCCHHHCeEEEEEEEeCCCce-eEEEEEEEEeCCCCCCCeEEcc-CCcee-----------
Confidence 1112 249999999999999999999876644 34466777765 4444322 22222
Q ss_pred EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEE
Q psy17146 259 KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 338 (1011)
Q Consensus 259 ~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W 338 (1011)
+.+|+.+.|.|.+.+.|.+..+.|
T Consensus 198 --------------------------------------------------------~~~g~~v~l~C~~~~~~~~~~~~w 221 (292)
T 4dkd_C 198 --------------------------------------------------------RIRGEAAQIVCSASSVDVNFDVFL 221 (292)
T ss_dssp --------------------------------------------------------CCSSSCEEEEEEEEESSSCCEEEC
T ss_pred --------------------------------------------------------EecCCCEEEEEEecCCCCceEEEE
Confidence 334555555555554444345555
Q ss_pred EECCeecCCC----------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 339 YINDQPVPAA----------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 339 ~k~g~~l~~~----------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
++++..+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 222 QHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-HAGNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp CBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTT-SCEEEEEEEECSSCEEEEEEEECC----
T ss_pred eCCCcccccCccceeccceeeeEEEEEECccChh-cCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence 5555444321 12358999999998 9999999999999999999999887643
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=258.54 Aligned_cols=291 Identities=18% Similarity=0.205 Sum_probs=187.6
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEc-------C-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEe
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVI-------D-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-------~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
....|.|...|.++.+.+|++|+|.|.+. + +.+.+.|+|++..+..... ...|+... ..+|.|.
T Consensus 15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~~~~------~~~L~i~ 86 (339)
T 3o4o_C 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE--EETRMWAQ------DGALWLL 86 (339)
T ss_dssp ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC--SSSCEEEE------TTEEEES
T ss_pred chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc--ccccEEee------CCeEEEC
Confidence 34568899999999999999999999996 4 5669999999976421111 12344321 1279999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEc----cCCCCCcEEEEEeC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS----ANGKPPAEITWIDG 171 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~----~~g~P~~~i~W~k~ 171 (1011)
+++.+|+|.|+|.+.+.. +..+..+.|.|...+............+.+|+.+.|.|.+ ..+.|.+.+.|+|+
T Consensus 87 ~v~~~D~G~Y~C~~~n~~----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~ 162 (339)
T 3o4o_C 87 PALQEDSGTYVCTTRNAS----YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD 162 (339)
T ss_dssp SBCTTCCEEEECCEEETT----EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEES
T ss_pred CCCcccCEEEEEEEECCc----ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecC
Confidence 999999999999999853 3466778888887765332122234467899999999985 57889999999999
Q ss_pred Cceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc--eeEEEEEEEEEeCCc----eEEEecC
Q psy17146 172 TGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT--YKVARLKLLVKYAPK----VQVSVIG 244 (1011)
Q Consensus 172 ~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~--~~s~~v~v~v~~~P~----~~~~~~~ 244 (1011)
+..+... .++.. ..+. +.|.|.+++.+|+|.|+|.|.|..|.. ..+..+.|.|...+. .......
T Consensus 163 g~~~~~~~~~~~~--~~~~------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~ 234 (339)
T 3o4o_C 163 SLLLDKDNEKFLS--VRGT------THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234 (339)
T ss_dssp SCBCCTTCSSEEE--CTTS------SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSC
T ss_pred CeeCCCCCceeEE--cCCc------ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCc
Confidence 8877553 22221 1111 379999999999999999999988754 235566677664321 1111122
Q ss_pred cceeecCceEEEEEEc---ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeC--CcccccCC
Q psy17146 245 SNRLVEGTDVRLYCKA---EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIG--SNRLVEGT 319 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~---~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~--~~~v~~g~ 319 (1011)
...+.+|+.++|.|.+ .+.|..+.+.|++++.++.. . ...+..+.
T Consensus 235 ~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~------------------------------~~~~~~~~~~~ 284 (339)
T 3o4o_C 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES------------------------------AYPGGRVTEGP 284 (339)
T ss_dssp CCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS------------------------------SSCSSSCEECC
T ss_pred eeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccc------------------------------ccccccceecc
Confidence 2234445555555555 44443344444444432210 0 00000000
Q ss_pred cEEEEEEeecCCCccEEEEEECCeecCCCcC---ccEEEEeecccccCC-cEEEEEEEcCCccceeeEEEEE
Q psy17146 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHD-SIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 320 ~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~---~~~L~I~~~~~~~d~-G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
...+..... ...|.|.++..+ |+ |.|+|.|.|..|..+..+.+.+
T Consensus 285 ----------------------~~~~~~~g~~~~~~~L~i~~v~~~-d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 285 ----------------------RQEYSENNENYIEVPLIFDPVTRE-DLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp ----------------------CEECCCSSSCEEEECCEECSSCCC-SCCCCCEEEEEETTEEECCBCCCCC
T ss_pred ----------------------eEEecccCceEEEEEEEEEEechh-hcCccEEEEEEeccCceEEEEEhhH
Confidence 000000011 127999999998 87 9999999999998887766554
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=243.02 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=167.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.|...+.++.+.+|++++|.|.+.+. +.|+|++..+. .+..... ......+|.|.+++.+|+|.|+|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~~~--------~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C 68 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP---VVWERMSQEPP--------QEMAKAQ-DGTFSSVLTLTNLTGLDTGEYFC 68 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC---CEEEBTTBCCS--------EEEEECT-TSCEEEEEEECSCCGGGCEEEEE
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce---EEEECCCCCcc--------cceeccC-CCceeEEEEEccCChhhCEEEEE
Confidence 445666678899999999999999876 99999997662 2332221 12224689999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcC-CCCCeeecCC---eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVP-PDPPRIVQGD---TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~~~~---~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.+.|..+.. ......+.|.+. +..+.+.... .+.+.+|+.+.|.|.+ . .|.+.++|++++........+
T Consensus 69 ~a~n~~g~~---~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~w~~~~~~~~~~~~~-- 141 (289)
T 3mjg_X 69 THNDSRGLE---TDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-T-DPQLVVTLHEKKGDVALPVPY-- 141 (289)
T ss_dssp ECCC---------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB-S-CTTSCEEEEESSCCSCCCCCE--
T ss_pred EEcccCCCC---cCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc-C-CCCceEEEEeCCCCCccceee--
Confidence 998854221 122344445443 3333433222 2678999999999994 4 677888998865222111111
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe--CCceEEEecCcceeecCceEEEEEEcc
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY--APKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~--~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
. ... .+. ..+|+|.|+|.|.|..+.. .+..+.|.+.. +|.+.+... ...+.+|+.++|.|.+.
T Consensus 142 --~-~~~------~~~----~~~d~G~Y~C~a~n~~~~~-~s~~~~l~v~~~~~p~i~~~~~-~~~v~~G~~v~L~C~~~ 206 (289)
T 3mjg_X 142 --D-HQR------GFS----GIFEDRSYICKTTIGDREV-DSDAYYVYRLQVSSINVSVNAV-QTVVRQGENITLMCIVI 206 (289)
T ss_dssp --E-TTT------EEE----ECCCSSEEEEEEEETTEEE-ECCCEEEEECCCCCCCCEEEES-CSEEETTSCEEEEEEEE
T ss_pred --c-CCc------Cee----eeccCcEEEEEEEeCCcee-eeeeEEEEecCCCCCCcEEeCC-cceeEcCCCEEEEEEEC
Confidence 1 111 111 3679999999999876544 23334555544 444443322 23455555555555555
Q ss_pred cCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEEC
Q psy17146 262 ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341 (1011)
Q Consensus 262 ~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~ 341 (1011)
+.| .+.+.|+++++...... . .......+
T Consensus 207 g~p-~p~v~W~~~~~~~~~~~-------------------------------------------------~-~~~~~~~~ 235 (289)
T 3mjg_X 207 GNE-VVNFEWTYPRKESGRLV-------------------------------------------------E-PVTDFLLD 235 (289)
T ss_dssp SCS-SBEEEEECTTSSSSCCC-------------------------------------------------C-CEEEESCT
T ss_pred CCC-CcceEEEcCCccCCCcc-------------------------------------------------c-ccccccCC
Confidence 433 24455554433211000 0 00000000
Q ss_pred CeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeC
Q psy17146 342 DQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRAR 396 (1011)
Q Consensus 342 g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~ 396 (1011)
+ .......|.|.++..+ |+|.|+|.|.|..|..+.++.|.|...|.+...
T Consensus 236 ~----~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~~ 285 (289)
T 3mjg_X 236 M----PYHIRSILHIPSAELE-DSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285 (289)
T ss_dssp T----TTEEEEEEEESSCCSS-CCEEEEEEEEETTTTEEEEEEEEEEEEC-----
T ss_pred c----ceEEEEEEEEcccChh-hCcEEEEEeecCCCCceeEEEEEEEEEecCccc
Confidence 0 0124478999999998 999999999999999999999999988765543
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=236.49 Aligned_cols=276 Identities=20% Similarity=0.205 Sum_probs=198.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... ..++.+... ..+..+|.|.+++.+|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~-~~~~~~L~i~~v~~~d~G~ 76 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD-----GLKYRIQEF-KGGYHQLIIASVTDDDATV 76 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCC-----SSSEEEEEE-TTTEEEEEESSCCGGGCSE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccC-----CCeEEEEEC-CCCEEEEEEccCChhhCeE
Confidence 4789999999999999999999999987 56799999999876421 235554432 2456789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCC--C-eeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDP--P-RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~--~-~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~ 181 (1011)
|+|.+.|.. +..+..+.|.|..++.. + .+.....+.+.+|+.+.|.|. +.|.|.+.+.|+|++..+..+.++
T Consensus 77 Y~C~a~n~~----g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~ 151 (305)
T 2nzi_A 77 YQVRATNQG----GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP-FSGKPDPVITWQKGQDLIDNNGHY 151 (305)
T ss_dssp EEEEEEETT----EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEE-EEEESCCEEEEEESSSBCCSSSSC
T ss_pred EEEEEEcCC----CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEE-ECCCCCCEEEEEECCEECCCCCcE
Confidence 999999863 34567778888754421 1 112224567889999999999 679999999999998887665444
Q ss_pred EEeeecCCceEEEEEEEEEee-ccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 182 TEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~-~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
......+ ...|.|.+ +..+|.|.|+|.|.|..|.. +..+.|.|...|....... .....+..+.|.|..
T Consensus 152 ~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~v~~~P~~p~~~~--~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 152 QVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFGID--QKTVELDVADVPDPPRGVK--VSDVSRDSVNLTWTE 221 (305)
T ss_dssp EEEECSS------EEEEEETTCCCSTTCEEEEEEEEETTEEE--EEEEEEEEEBCCCCCEEEE--EESCCSSCEEEEEEC
T ss_pred EEEEcCC------ceEEEEecCCccCccEEEEEEEEeCCCce--eeEEEEEEecCCCCCCCce--eeeccCCEEEEEEcC
Confidence 3332222 35899999 99999999999999999876 4556666666554322111 001134445554443
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
.. ..|....+.|.+...+.+ ...|.+
T Consensus 222 p~-----------------------------------------------------~~g~~~i~~y~v~~~~~~-~~~w~~ 247 (305)
T 2nzi_A 222 PA-----------------------------------------------------SDGGSKITNYIVEKCATT-AERWLR 247 (305)
T ss_dssp CS-----------------------------------------------------CCSBSCEEEEEEEEEETT-SCCEEE
T ss_pred Cc-----------------------------------------------------cCCCCceeEEEEEEecCC-CCccEE
Confidence 21 123344566777666654 678988
Q ss_pred CCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceee
Q psy17146 341 NDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382 (1011)
Q Consensus 341 ~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s 382 (1011)
.+... ...|.|.++... +.|.|+|.|.|..|....+
T Consensus 248 ~~~~~-----~~~~~i~~l~~~-~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 248 VGQAR-----ETRYTVINLFGK-TSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp EEEES-----SSEEEECSCCSS-CEEEEEEEEEETTEECCCC
T ss_pred Ccccc-----CceEEecCCCCC-CeEEEEEEEEeCCcccCCc
Confidence 76543 568999999987 9999999999999976544
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=269.70 Aligned_cols=360 Identities=13% Similarity=0.065 Sum_probs=246.1
Q ss_pred CCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEee-ccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccC
Q psy17146 404 RGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT-SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482 (1011)
Q Consensus 404 ~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~ 482 (1011)
.++++.|.|.+.|.|.|.+.|.|+|.....-....+.|..+ ..+..+.|.|.+.|..+......+.+...
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~--------- 160 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH--------- 160 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESS---------
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeec---------
Confidence 34589999999999999999999997643222333445433 22334788887765322111111111000
Q ss_pred cccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcE
Q psy17146 483 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562 (1011)
Q Consensus 483 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~ 562 (1011)
.+..+|.|. .+.++.+.+|+++
T Consensus 161 ---------------------------------------------------------~~~~~p~~~-~~~~~~v~~G~~v 182 (731)
T 2v5y_A 161 ---------------------------------------------------------PCTRTPHFL-RIQNVEVNAGQFA 182 (731)
T ss_dssp ---------------------------------------------------------CCSSSCEEC-CCCCEEEETTSCE
T ss_pred ---------------------------------------------------------ccccccccc-cccceEEeCCCcE
Confidence 011356666 5668999999999
Q ss_pred EEEEEEecCCCCeEE-EE--ecCCceeec------C---CCcEEEeecCCCCCEEEEEEEEecCCCc-eeeEEEEEEcCC
Q psy17146 563 NLLCDVDGNPAPEIT-WI--HEDSDKVVG------N---SPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKGR 629 (1011)
Q Consensus 563 ~l~C~~~g~p~p~v~-W~--k~~~~~~~~------~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~ 629 (1011)
+|.|.+.|.|.|.+. |+ +++..+... . .++|.|.++..+|+|.|+|.|.| ..|. .+..+.|.|..+
T Consensus 183 ~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n-~~G~~~s~~~~l~V~~~ 261 (731)
T 2v5y_A 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT-EGGVGISNYAELVVKEP 261 (731)
T ss_dssp EEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEE-TTEEEECCCEEEEEECC
T ss_pred EEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEEC-CCCCcceeeEEEEEecC
Confidence 999999999999988 88 666554221 1 36899999999999999999999 4565 777888999999
Q ss_pred CeeecCCceeeecCCcEEEEEEEEecC--CCC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAFSIP--PPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
|.+..+..........+.|.|.....+ .++ .|.|...+.. ...+.. .....+.|.++.+.+.+
T Consensus 262 P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-------~~~~~~-----~~~~~~~i~~L~p~t~Y 329 (731)
T 2v5y_A 262 PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-------WNDRQP-----VDSTSYKIGHLDPDTEY 329 (731)
T ss_dssp CCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-------CEEEEE-----CCSSEEEECSCCTTCEE
T ss_pred CCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC-------ceEEec-----cCcceEEEeCCCCCCEE
Confidence 887655555445567889999764321 221 4566554211 111111 11368999999999999
Q ss_pred EEEEEEE--cCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc
Q psy17146 705 VYNCSVS--NPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC 781 (1011)
Q Consensus 705 ~Y~C~a~--N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W 781 (1011)
.|+|.|. |..|....+..+.+... ...++ +|.++.+..++.+++.|+|
T Consensus 330 ~~~V~A~~~N~~G~s~~S~~~~~~t~-----------------------------~~~p~~~P~~~~~~~~~~~sv~l~W 380 (731)
T 2v5y_A 330 EISVLLTRPGEGGTGSPGPALRTRTK-----------------------------CADPMRGPRKLEVVEVKSRQITIRW 380 (731)
T ss_dssp EEEEEEECSSTTCSCCBCCCEEEECC-----------------------------CCCCSCCCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEecCCCccccCCCcEEeeec-----------------------------CCCCCCCCceeEEEeccCCeEEEEE
Confidence 9999999 99997653332322110 12333 7888989999999999999
Q ss_pred -cCCC--CCCCCcCcceeeecCc------------c-------------cccccccc---c---CCCCCCCccccccccc
Q psy17146 782 -KESD--NSSNISDIKLEFRTGS------------S-------------VSNVHLDY---A---GHDSETGSESVHTRIG 827 (1011)
Q Consensus 782 -~~~d--~~s~I~~Y~ve~~~~~------------~-------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~ 827 (1011)
++.+ .+.++.+|.|+|+... . .|++.|.| | .|.|+.....++|.++
T Consensus 381 ~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~S~~~~~~T~~~ 460 (731)
T 2v5y_A 381 EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDED 460 (731)
T ss_dssp ECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEECCCEEEECCCC
T ss_pred ECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCCCceEEEEccCC
Confidence 4433 3568899999986432 0 78899999 5 7777423667889999
Q ss_pred ccccccc-cCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 828 VPLAGPV-PMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 828 ~P~~~P~-~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
+|..+|. ++.... ..+...|+|+|| ...||.+.||+|+|++.+..
T Consensus 461 ~P~~p~~~~~~~~~----~~~si~l~W~~P--~~~~g~i~~Y~V~~~~~~~~ 506 (731)
T 2v5y_A 461 LPGAVPTESIQGST----FEEKIFLQWREP--TQTYGVITLYEITYKAVSSF 506 (731)
T ss_dssp CCCCCCTTTCEEEE----ETTEEEEECCCC--SCCSSCCCEEEEEEEEEEEC
T ss_pred CCCCCCcceEEeee----cCCeEEEEEcCC--CCCCCCccceEEEEEECcCC
Confidence 9998874 443322 233446699995 45789999999999987753
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=237.52 Aligned_cols=189 Identities=15% Similarity=0.237 Sum_probs=130.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS 84 (344)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence 35678899999999999999874 4689999973 22210 0 0011246888877655677899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPP-AEITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.. ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|. +.++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~n~~----~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g 160 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNM----AYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 160 (344)
T ss_dssp SCCGGGCEEEEEEETTTT----CEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTT
T ss_pred CCCcccCEEEEEEEecCc----ceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCC
Confidence 999999999999998732 2334457888873 34455544 2334456789999999995444475 799999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
..+.... .......++ .+...+.|.|.++..+| |.|+|.|.|..+.......
T Consensus 161 ~~~~~~~-~~~~~~~~~-~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~ 212 (344)
T 1za6_B 161 LTSGVHT-FPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 212 (344)
T ss_dssp BCTTEEE-CCCEECTTS-CEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEE
T ss_pred ccCceeE-CCCeECCCC-CEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEe
Confidence 7642110 000111223 44555789999998888 9999999999886533333
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-24 Score=233.82 Aligned_cols=239 Identities=15% Similarity=0.166 Sum_probs=135.2
Q ss_pred eccceeecCCceeEEec--CcEEEEEEEcC--C-CCeeEEeeCCeecCCcccCCCCcceEEeecCC--CceeEEEEeecc
Q psy17146 26 REQKFAMEPQDQTAVVG--SRVTLPCRVID--K-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE--EGDYSLEIYPVM 98 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G--~~v~L~C~v~~--~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~--~~~~~L~I~~v~ 98 (1011)
.+|.+.+.+.......| ++++|.|.+.+ + .+.|.|+|+|..+..... .......+. .....|.|.+++
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~-----~~~~~~~~g~~~~~s~l~i~~~~ 80 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS-----TASTTQEGELASTQSELTLSQKH 80 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE-----EEEEEEETTEEEEEEEEEEEHHH
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEccccee-----cCCcCccCCcEEEEEEEEEcHHH
Confidence 35666665544333445 69999999987 2 358999999988753210 001111110 012368899999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCee--ecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCc
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI--VQGDTLYTTEDREIELECISANGKPPA---EITWIDGTG 173 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~ 173 (1011)
.+|+|.|+|+|.|... .....+.+.+......+.+ ..+....+.+|+.+.|.|.+.+..|.+ .|+|+|+++
T Consensus 81 ~~d~g~Y~C~a~n~~~----~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g 156 (323)
T 2wqr_A 81 WLSDRTYTCQVTYQGH----TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG 156 (323)
T ss_dssp HHTTCCEEEEEEETTE----EEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC----CcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCC
Confidence 9999999999998531 1111111111111112222 233345578899999999954445666 999999765
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE----EEeCCceEEEecCcceee
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL----VKYAPKVQVSVIGSNRLV 249 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~----v~~~P~~~~~~~~~~~v~ 249 (1011)
.+............++ .+...+.|.|.+++.+|+|.|+|.|.|..+... ..+.|. +..+|.+.+.......+.
T Consensus 157 ~~~~~~~~~~~~~~~g-~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~~~~~~P~v~~~~~~~~~~~ 233 (323)
T 2wqr_A 157 KPVNHSTRKEEKQRNG-TLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTSGPRAAPEVYAFATPEWPGS 233 (323)
T ss_dssp CCCCCCCCEEEECTTS-CEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCCSCCBCCEEEEEECCCCTTC
T ss_pred cccccccCCCccCCCC-CEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEEccCCCCCCCEEEEeCCChHHhc
Confidence 5443221111112233 334567899999999999999999999865432 223332 224555544333222121
Q ss_pred cCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 250 EGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 250 ~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
|+.++|.|.+.+.++ ...+.|++||++
T Consensus 234 -g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 261 (323)
T 2wqr_A 234 -RDKRTLACLIQNFMPEDISVQWLHNEVQ 261 (323)
T ss_dssp -TTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred -CCcEEEEEEeeeeeCCCcEEEEEECCEE
Confidence 555555555554322 234445444443
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=207.62 Aligned_cols=176 Identities=19% Similarity=0.366 Sum_probs=150.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+... .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4788999999999999999999999999999999999998544321 12 289999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC------CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~------~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
| ..+..+..+.|.|..+|.+..+ ....+.+|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+..
T Consensus 83 n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~--~~~~~~~~~--- 155 (197)
T 2j8h_A 83 N-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLID--NNGHYQVIV--- 155 (197)
T ss_dssp E-TTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC-EEEEEESSCEEC--SSSSCEEEE---
T ss_pred E-CCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC-cEEEEECCEEee--cCCCEEEEE---
Confidence 9 5677888999999888877633 34567889999999999999999 999999999987 445666544
Q ss_pred CccceeEEEEcC-CCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+..+.|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 156 -~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 156 -TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp -CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 23467999999 99999999999999999999999999874
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=207.86 Aligned_cols=176 Identities=26% Similarity=0.402 Sum_probs=149.8
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 5788999999999999999999999999999999999998654322 23589999999999999999999
Q ss_pred ecCCCceeeEEEEEEc---CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 612 VMGFPEVGAEATVYLK---GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~---~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
| ..+.....+.|.|. .+|.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+.. +
T Consensus 84 n-~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~--~~~~~~~~~----~ 155 (194)
T 2a38_A 84 N-GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDGAEIQ--SSLDFQISQ----E 155 (194)
T ss_dssp E-TTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC-EEEEEETTEECC--CSSSEEEEE----E
T ss_pred c-CCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC-eEEEEECCEECC--CCCcEEEEE----c
Confidence 9 56677777888887 566666 4456778999999999999999999 899999999987 345566544 3
Q ss_pred cceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 688 ~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 156 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 345689999999999999999999999999999998873
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=203.54 Aligned_cols=179 Identities=21% Similarity=0.408 Sum_probs=151.6
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec------CC---CcEEEeecCCCCCEEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG------NS---PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~------~~---~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
+..+|.|...+.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+... .. .+|.|.++..+|+|.|+|.|.
T Consensus 4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83 (197)
T ss_dssp CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence 346789999999999999999999999999999999999998554221 12 279999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC----CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~----~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
| ..+.....+.|.|..+|.+... ....+..|+.+.|.|.+.|.|.| .+.|+++|..+. ...++.+.. .
T Consensus 84 n-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~--~~~~~~~~~----~ 155 (197)
T 3lcy_A 84 N-EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQ--NSENITIEN----T 155 (197)
T ss_dssp C-SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CCSSEEEEE----C
T ss_pred C-CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC-eeEEeECCEECC--CCCceEEEE----c
Confidence 8 5677888889999888877632 45568899999999999999999 999999999987 445565544 2
Q ss_pred cceeEEEEcCCCC-CCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 688 GIKSTLIIRESRH-DHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 688 ~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+..+.|.|.++.. +|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 156 ~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp SSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 3357999999995 899999999999999999999998854
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-24 Score=235.03 Aligned_cols=240 Identities=16% Similarity=0.229 Sum_probs=156.5
Q ss_pred CcEEEEeecCCC-C-CCceEEEeCCCceeec--------cC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 406 AGVNLLCDVDGN-P-APEITWIHEDSDKVVG--------NS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 406 ~~v~l~C~~~g~-p-~p~v~W~k~~~~~~~~--------~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
+.+.|.|.+.|. | .+.|+|+|++..+... .. ..|.|.....+|+|.|+|.|.|..+. ....+.
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTK 103 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEEC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeee
Confidence 699999999875 4 4699999998543211 11 23566666777999999999985421 111110
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecc-eee
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGP-RFR 548 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P-~~~ 548 (1011)
+.+. .+...| .+.
T Consensus 104 ~~~~------------------------------------------------------------------~~~~~p~v~~ 117 (323)
T 2wqr_A 104 KCAD------------------------------------------------------------------SNPRGVSAYL 117 (323)
T ss_dssp CCCC------------------------------------------------------------------SSGGGCEEEE
T ss_pred cCCC------------------------------------------------------------------CCCCCCEEEE
Confidence 0000 000112 223
Q ss_pred cCCceEEEcCCCcEEEEEEEecC-CCC---eEEEEecCCceee--------cC------CCcEEEeecCCCCCEEEEEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN-PAP---EITWIHEDSDKVV--------GN------SPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~-p~p---~v~W~k~~~~~~~--------~~------~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
..|....+.+|+.++|.|.+.|. |.+ .|.|+|++..... .. .+.|+|.++..+|+|.|+|.|
T Consensus 118 ~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a 197 (323)
T 2wqr_A 118 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV 197 (323)
T ss_dssp CCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred cCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEE
Confidence 34555567899999999999986 556 8999997633211 11 236999999999999999999
Q ss_pred EecCCCceeeEEEEE----EcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEe---
Q psy17146 611 SVMGFPEVGAEATVY----LKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVL--- 681 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~----V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~--- 681 (1011)
.|.. ........+. +..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||..+... .+...
T Consensus 198 ~n~~-~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~---~~~~~~~~ 273 (323)
T 2wqr_A 198 THPH-LPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA---RHSTTQPR 273 (323)
T ss_dssp ECTT-SSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG---GEEECCCE
T ss_pred ECCC-CCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC---ceeecCcc
Confidence 9943 2222333332 235777652 222122239999999999995 444489999999998642 11111
Q ss_pred -cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 682 -EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 682 -~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.........+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 274 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 274 KTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp ECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred cCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 00000113468999999999999999999999987
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=199.99 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=146.5
Q ss_pred ecceeecCCceEEEcC-CCcEEEEEEEecCCC--CeEEEEecCCceee----cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDR-GAGVNLLCDVDGNPA--PEITWIHEDSDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~-G~~~~l~C~~~g~p~--p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...+ ...+.+ |+.++|.|.+.+.|. +.+.|+|++..+.. ..++.|.|.+++.+|+|.|+|.|.| .
T Consensus 2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-~- 78 (190)
T 2wv3_A 2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHF-V- 78 (190)
T ss_dssp -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEE-T-
T ss_pred CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEe-C-
Confidence 367777644 455556 999999999999987 79999999855432 2446899999999999999999999 4
Q ss_pred CceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEE--CCeEeccc-CCCCeEEecCCcCcccee
Q psy17146 616 PEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY--RGEEIGVG-SSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~--~g~~l~~~-~~~~~~~~~~~~~~~~~~ 691 (1011)
+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|++ +|..+... ...++.+.. .+..+
T Consensus 79 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g~~~~~~~~~~~~~~~~----~~~~~ 153 (190)
T 2wv3_A 79 SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIIN----KENYT 153 (190)
T ss_dssp TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETTEEEECCCTTSCEEEEE----CSSEE
T ss_pred CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCCceeeeecCCCeEEEec----CCCee
Confidence 788899999999999988 4556779999999999999999999 999999 88887542 345666654 33456
Q ss_pred EEEEcCCC-CCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 692 TLIIRESR-HDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 692 ~L~I~~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.|.|.++. .+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 154 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 154 ELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 89999999 799999999999999999999988874
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=227.28 Aligned_cols=253 Identities=17% Similarity=0.249 Sum_probs=162.3
Q ss_pred CCceEecCCCcEEEEeecCCCC--CCceEEEeCC--Cce----------------------e-e-----ccCCcEEEEee
Q psy17146 397 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------V-V-----GNSPNLTLLMT 444 (1011)
Q Consensus 397 p~~~~v~~G~~v~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~-~-----~~~~~L~I~~v 444 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ... . . .....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 4567899999999999998763 6799999973 211 1 0 01236999999
Q ss_pred ccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCce
Q psy17146 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524 (1011)
Q Consensus 445 ~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y 524 (1011)
+.+|+|.|+|.|.|.. ......+.|.|...+.
T Consensus 87 ~~~D~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~----------------------------------------------- 118 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNM-AYWGQGTLVTVSSAST----------------------------------------------- 118 (344)
T ss_dssp CGGGCEEEEEEETTTT-CEECCCEEEEECSSCC-----------------------------------------------
T ss_pred CcccCEEEEEEEecCc-ceecCcEEEEEecCCC-----------------------------------------------
Confidence 9999999999998732 1222233333321000
Q ss_pred EEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecC-CC-CeEEEEecCCcee-------ecCC-----
Q psy17146 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PEITWIHEDSDKV-------VGNS----- 590 (1011)
Q Consensus 525 ~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~~~-------~~~~----- 590 (1011)
.+|.+...+....+.+|+.++|.|.+.|. |. +.+.|+|++..+. ...+
T Consensus 119 ------------------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~ 180 (344)
T 1za6_B 119 ------------------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL 180 (344)
T ss_dssp ------------------BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE
T ss_pred ------------------CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEE
Confidence 12333322222335789999999999987 64 6999999986421 1122
Q ss_pred -CcEEEeecCCCCCEEEEEEEEecCCCce--eeEEEE----------------------EEcCCCeeec-CCceeeecCC
Q psy17146 591 -PNLTLLMTSDDLAGRYYCKASVMGFPEV--GAEATV----------------------YLKGRPTIIS-HRTQFGIPGD 644 (1011)
Q Consensus 591 -~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--s~~~~l----------------------~V~~~P~i~~-~~~~~v~~G~ 644 (1011)
+.|+|.++..+| |.|+|.|.|. .+.. ...+.+ .+..+|.+.. +.......|+
T Consensus 181 ~s~L~i~~~~~~d-G~Y~C~a~n~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~ 258 (344)
T 1za6_B 181 SSVVTVPSSSLGT-QTYICNVNHK-PSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKN 258 (344)
T ss_dssp EEEEEEETTHHHH-BCEEEEEEEG-GGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSS
T ss_pred EEEEEEcHHHcCC-CcEEEEEEeC-CCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCC
Confidence 368898888888 9999999994 3332 222221 2245677652 2222233577
Q ss_pred cEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++|.|.+.|. |+...|+|+|||..+......++....+ ......+.|.|.....+|.|.|+|.|.|......
T Consensus 259 ~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 259 QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp SEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTT-SCEEEEEEEEECHHHHHTTCEEEEEEECTTSTTS
T ss_pred cEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCC-CcEEEEEEEEEChHHccCCCeEEEEEEcCCCCCC
Confidence 79999999996 4334899999999876322111111111 0001245677877777889999999999876543
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=204.13 Aligned_cols=174 Identities=24% Similarity=0.413 Sum_probs=145.9
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCC--CcEEEeecCC-CCCEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNS--PNLTLLMTSD-DLAGRYYCKA 610 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~--~~L~I~~v~~-~d~G~Y~C~a 610 (1011)
.+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+.. ..+ ..|.|.++.. +|+|.|+|.|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 578999999999999999999999999999999999999855421 112 5899999999 9999999999
Q ss_pred EecCCCc-eeeEEEEEEcCC-------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 611 SVMGFPE-VGAEATVYLKGR-------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 611 ~n~~~~~-~s~~~~l~V~~~-------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
.| ..+. .+..+.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.. ...++.+.
T Consensus 85 ~n-~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~-~~~~~~~~ 161 (212)
T 2yd1_A 85 EN-GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP-NIYWIKNQTKVDM-SNPRYSLK 161 (212)
T ss_dssp EC-SSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC-EEEEEETTEECCT-TSTTEEEE
T ss_pred Ee-CCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC-eEEEEECCeEccc-CCCeEEcc
Confidence 99 4555 788889999765 6666 3456678899999999999999999 8999999999874 23445443
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE-EEEEecC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE-IMLKPQK 727 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~ 727 (1011)
. +.|.|.++..+|+|.|+|.|.|..|..... +.|.|+.
T Consensus 162 ~--------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 162 D--------GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp T--------TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred C--------CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 2 489999999999999999999999988654 7888854
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-22 Score=202.78 Aligned_cols=179 Identities=22% Similarity=0.331 Sum_probs=143.4
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeec-CCCCCEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMT-SDDLAGRYYCK 609 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v-~~~d~G~Y~C~ 609 (1011)
+..+|.|...|.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .....|.|.++ ..+|+|.|+|.
T Consensus 3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence 34689999999999999999999999999999999999999855422 13457999999 59999999999
Q ss_pred EEecCCCceeeEEEEEEcCC-------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC-CCCeEE
Q psy17146 610 ASVMGFPEVGAEATVYLKGR-------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS-SDDYSV 680 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~-------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~-~~~~~~ 680 (1011)
|.| ..+..+..+.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.... ..++..
T Consensus 83 a~n-~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~ 160 (212)
T 2yd6_A 83 ASN-NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQ 160 (212)
T ss_dssp EEE-TTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEEC------CCEEE
T ss_pred EEc-CCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-eEEEEECCccccCcCCCceEEE
Confidence 999 5677788888988654 5665 3456678899999999999999999 999999999987532 345544
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
.. .+..+.|.|.++..+|+|.|+|.|.|.+|... ..+.|.|
T Consensus 161 ~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~ 202 (212)
T 2yd6_A 161 LR----SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202 (212)
T ss_dssp EE----ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred Ee----cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEE
Confidence 33 23368999999999999999999999999653 3445544
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-23 Score=206.80 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=127.9
Q ss_pred eEEEcCCCcEEEEEE---EecCCCCeEEEEecCCcee--------------------------ecCCCcEEEeecCCCCC
Q psy17146 553 SVQVDRGAGVNLLCD---VDGNPAPEITWIHEDSDKV--------------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~---~~g~p~p~v~W~k~~~~~~--------------------------~~~~~~L~I~~v~~~d~ 603 (1011)
++.+..|+.++|.|. +.+.|.+.|+|+|+|.... ..+...|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467889999999995 5788999999999874321 12235799999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc--cCCCCeEE
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV--GSSDDYSV 680 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~--~~~~~~~~ 680 (1011)
|.|+|.|.| +.+..+..+.|.|..||.+.. +....+.+|++++|.|.+.|.|.| .|+|++++..+.. ....++.+
T Consensus 82 G~Y~C~a~n-~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 82 GNYLCRMKL-GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCC-EEEECCC------------CCEE
T ss_pred eEEEEEEEc-CCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCC-EEEEEECCeeecCcccccceEEE
Confidence 999999999 678889999999999998874 456678899999999999999999 9999987755432 23456665
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
.. ++....|.|.++..+|+|.|+|.|+|.+|++.+.
T Consensus 160 ~~----~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 160 EK----DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp CT----TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred eC----CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 54 3445567778999999999999999999988753
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=202.17 Aligned_cols=176 Identities=24% Similarity=0.364 Sum_probs=147.7
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+..+|.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+. ..++..|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence 3467889999999999999999999999999999999999875432 23445799999999999999999999
Q ss_pred cCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 613 MGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
......+..+.|.|..+|.+.. +....+..|+.++|.|.+.|.|.+ .+.|+++|..+. ...++.+..+ +
T Consensus 84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~--~~~~~~~~~~-------~ 153 (192)
T 2iep_A 84 GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP-SVSWIKGDSALR--ENSRIAVLES-------G 153 (192)
T ss_dssp SSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECC--CCSSEEECTT-------S
T ss_pred CCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCc-eEEEEeCCEEcc--CCCcEEEecC-------C
Confidence 4333467778899999998874 456778999999999999999999 999999999987 3445555442 5
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 154 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 79999999999999999999999977 456777764
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=197.93 Aligned_cols=174 Identities=20% Similarity=0.304 Sum_probs=145.8
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEe-cCCceee-----------cCCCcEEEeecCCCCCEEEEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH-EDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k-~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
++.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ ++..+.. ...+.|.|.+++.+|+|.|+|.|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 45677788899999999999999999987 88999999 6544321 34478999999999999999999
Q ss_pred EecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 611 SVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
.|...+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+......++.+..+
T Consensus 82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~------ 154 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN------ 154 (191)
T ss_dssp EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTT------
T ss_pred EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCC-EEEEEECCEEeeccCCceEEEecC------
Confidence 99544678888999999999987 4567778999999999999999999 899999999998656666666543
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 155 -~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp -SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred -CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 47999999999999999999999986655555543
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=199.48 Aligned_cols=169 Identities=17% Similarity=0.293 Sum_probs=141.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCceeec----------C--------CCcEEEeecCCCCCE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG----------N--------SPNLTLLMTSDDLAG 604 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~~~~----------~--------~~~L~I~~v~~~d~G 604 (1011)
+|.|...|.+..+.+|++++|.|.+. +.|.+.+.|+|++..+... . .+.|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 68899999999999999999999999 9999999999998554322 1 358999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 605 RYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
.|+|.|.|......+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.|..+.|+++|..+..... .
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--~----- 154 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG--H----- 154 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTT--S-----
T ss_pred EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCC--c-----
Confidence 999999994333345568999999998874 55677899999999999999998867999999998874221 1
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
...+.|.|.+++ |+|.|+|.|.|..|... +.+.|.|
T Consensus 155 ----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 124789999987 78999999999999885 7888887
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=200.52 Aligned_cols=169 Identities=17% Similarity=0.262 Sum_probs=132.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec-------C----CCcEEEeecCCCCCEEEEEEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG-------N----SPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~-------~----~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.|... .+..+.+|+.+.|.|.+.+ .|.|.++|+|+|..+... + ..+|.|.++..+|+|.|+|.|.|
T Consensus 4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 455443 3788999999999999964 799999999998665321 1 12699999999999999999999
Q ss_pred cCCCceeeEEEEEEc---------------------CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 613 MGFPEVGAEATVYLK---------------------GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~---------------------~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
+. ......+.+. .+|.+..+....+.+|+.++|.|.+.|. |.| .|+|+|||.++
T Consensus 83 -g~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l 158 (207)
T 3rbs_A 83 -GK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET-HIVWYKDEREI 158 (207)
T ss_dssp -TT--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEE
T ss_pred -CC--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEEC
Confidence 33 3333333221 3677775555778999999999999999 889 99999999999
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.. ..++.. .....+|.|.++..+|+|.|+|.|.|.+|.++.++.|.++
T Consensus 159 ~~--~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 159 SV--DEKHDF------KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp CC--CCCCCC------SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CC--CCceEc------CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 74 233322 2234689999999999999999999999999999998763
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=196.38 Aligned_cols=173 Identities=21% Similarity=0.398 Sum_probs=142.3
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+. ...+++|.|.+++.+|+|.|+|.|.|...
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 5788888999999999999999999999999999999985543 23457899999999999999999999432
Q ss_pred C-ceeeEEEEEEcCCCeeecCC---ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 616 P-EVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 ~-~~s~~~~l~V~~~P~i~~~~---~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
+ .....+.+.|..+|.+.... ...+..|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+... .+
T Consensus 82 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~~~--~~~~~~~~~~------~~ 152 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIE--ENEKYILKGS------NT 152 (189)
T ss_dssp TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC-EEEEEETTEECC--CSSSEEEETT------TT
T ss_pred CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC-eEEEEECCEECc--CCCcEEEecC------CC
Confidence 3 34467788888888887442 4567789999999999999999 999999999987 3445555432 36
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 153 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 186 (189)
T 2v5t_A 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186 (189)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence 8999999999999999999999999998888876
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=194.67 Aligned_cols=167 Identities=22% Similarity=0.378 Sum_probs=136.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------C---CCcEEEeecCCCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------N---SPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------~---~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+... . .+.|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 577888899999999999999999999999999999998543221 1 26899999999999999999998
Q ss_pred cCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 613 MGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
......+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.|..+.|+++|..+..... ...
T Consensus 82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------------~~~ 148 (182)
T 1rhf_A 82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPS 148 (182)
T ss_dssp CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------------SSE
T ss_pred CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------------Cce
Confidence 5333467889999999999874 55677999999999999999999878999999998853111 247
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
.|.|.++ +|+|.|+|.|.|..|... .++.|.|
T Consensus 149 ~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 149 VLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp EEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 8999998 589999999999999874 4777776
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=200.27 Aligned_cols=169 Identities=23% Similarity=0.316 Sum_probs=144.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
..+.|...|.++.+.+|+.+.|.|.+.+.|.+.+.|+|++..+.....+.|.|.+++.+|+|.|+|.|.|......+..+
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~ 96 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence 46788899999999999999999999999999999999998777777889999999999999999999994333446678
Q ss_pred EEEEcCC---------------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 623 TVYLKGR---------------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 623 ~l~V~~~---------------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+...
T Consensus 97 ~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~~~~~~~~------------- 162 (218)
T 3k0w_A 97 QLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHE------------- 162 (218)
T ss_dssp EEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC-EEEEEETTEECTTC-------------
T ss_pred EEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC-eEEEEECCEECCCC-------------
Confidence 8888765 4555 4456778999999999999999999 99999999988632
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCC-eEEEEEEEecC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGS-DSVEIMLKPQK 727 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~ 727 (1011)
....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 163 --~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 163 --TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp --CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred --CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 1258999999999999999999999997 67788888754
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=192.23 Aligned_cols=188 Identities=18% Similarity=0.296 Sum_probs=145.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.... ..++.+... .+..+|.|.+++.+|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~--~~~~~L~i~~~~~~d~G~ 77 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST----LPGVQISFS--DGRAKLTIPAVTKANSGR 77 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTT----STTCEEEEE--TTEEEEEESSCCGGGCEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEccccc----CCceEEEeC--CCEEEEEECCCCcccCEE
Confidence 4688999999999999999999999987 667999999997764322 123444332 356789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.. +.....+.|.|.....+|.+. ......+.+|+.+.|.|. +.++|.+.+.|+|++..+..+.++..
T Consensus 78 Y~C~~~n~~----~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~ 152 (194)
T 2a38_A 78 YSLKATNGS----GQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR-VTGIPTPVVKFYRDGAEIQSSLDFQI 152 (194)
T ss_dssp EEEEEEETT----EEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEE-EEEESCCEEEEEETTEECCCSSSEEE
T ss_pred EEEEEEcCC----ceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEE-EEEecCCeEEEEECCEECCCCCcEEE
Confidence 999998853 335566788888766666554 334667889999999999 67899999999999988876555543
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
..... ..+|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 153 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V 193 (194)
T 2a38_A 153 SQEGD------LYSLLIAEAYPEDSGTYSVNATNSVGRA--TSTAELLV 193 (194)
T ss_dssp EEETT------EEEEEEEEECGGGCEEEEEEEEETTEEE--EEEEEEEE
T ss_pred EEcCC------EEEEEECCCChhcCeEEEEEEEeCCCce--EEEEEEEE
Confidence 33222 2479999999999999999999999876 44444443
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=193.54 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=142.5
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec-ccCCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV-MLDDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v-~~~D~ 102 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. .+.............|.|.++ +.+|+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~~d~ 76 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-------QRFEVIEFDDGSGSVLRIQPLRTPRDE 76 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-------TTEEEEEEGGGTEEEEEECSCCTTTTC
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC-------CceeEEEEcCCCceEEEEeccCCCCCC
Confidence 35799999999999999999999999986 6779999999987643 233332222234568999999 59999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcC----CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVP----PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~----p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+.. +..+..+.|.|... +..|.+. .+....+.+|+.+.|.|. +.|+|.+.+.|+|++..+..
T Consensus 77 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~v~W~~~g~~l~~ 151 (212)
T 2yd6_A 77 AIYECVASNNV----GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDT 151 (212)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEE-EECSSCCEEEEEETTEEC--
T ss_pred eEEEEEEEcCC----CcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEE-ecCCCCCeEEEEECCccccC
Confidence 99999999863 34567788888764 2334554 334567889999999999 67999999999999988755
Q ss_pred c---eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 178 N---VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
. .++....... .+.|.|.+++.+|+|.|+|.|.|..|.. .+....|.+...|.
T Consensus 152 ~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 152 SNNNGRIKQLRSES------IGALQIEQSEESDQGKYECVATNSAGTR-YSAPANLYVRGTKH 207 (212)
T ss_dssp ----CCEEEEEETT------EEEEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---
T ss_pred cCCCceEEEEecCC------eEEEEEcCCCcccCEEEEEEEECCCCcc-ccccccEEEEeccc
Confidence 3 1221111111 3689999999999999999999999976 34455666655554
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-21 Score=192.41 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=144.9
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...++.+... ..+.++|.|.+++.+|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~ 76 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-----DGLKYRIQEF-KGGYHQLIIASVTDDDATV 76 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCC-----CSSSEEEEEE-TTTEEEEEECSCCGGGCSE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECcc-----CCCcEEEEEc-CCCEEEEEECcCCHHhCEE
Confidence 4689999999999999999999999987 5679999999987642 2245555433 3456799999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCC--C-eeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDP--P-RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~--~-~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~ 181 (1011)
|+|.+.+.. +..+..+.|.|..++.. + .+.....+.+.+|+.+.|.|. +.++|.+.+.|+|++..+....++
T Consensus 77 Y~C~~~n~~----g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~ 151 (197)
T 2j8h_A 77 YQVRATNQG----GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP-FSGKPDPVITWQKGQDLIDNNGHY 151 (197)
T ss_dssp EEEEEEETT----EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEE-EEEESCCEEEEEESSCEECSSSSC
T ss_pred EEEEEEECC----CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEE-EEecCCCcEEEEECCEEeecCCCE
Confidence 999999863 34567788888765431 1 122223567889999999999 679999999999999888665554
Q ss_pred EEeeecCCceEEEEEEEEEee-ccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 182 TEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~-~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
......+ .+.|.|.+ +..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 152 ~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~ 196 (197)
T 2j8h_A 152 QVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFGID--QKTVELDVA 196 (197)
T ss_dssp EEEECSS------EEEEECTTCCCGGGCEEEEEEEEETTEEE--EEEEEEEEE
T ss_pred EEEEcCC------ceEEEEeCCCCcccCEeEEEEEEeCCCcE--eEEEEEEEe
Confidence 4332222 35899999 99999999999999999876 455555543
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=197.61 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=138.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..|.+...|.+..+.+|+.++|.|.+.+.|.+. +.|+|++..+. ...+.|.|.+++.+|+|.|+|.|.| +..+..
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~-~~~~~L~i~~v~~~D~G~Y~C~a~n---~~~s~~ 81 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-SQASSYFIDAATVDDSGEYRCQTQL---STLSDP 81 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEES-CCSSEEEESSCCGGGCEEEEEEETT---SBCCCC
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcc-cCccEEEEecccccCCEEEEEEeCC---Cccccc
Confidence 356777788888999999999999999998876 99999986543 3348999999999999999999987 355667
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.|.|..+|.+.......+.+|+.++|.|.+.+.++ + .+.|+|||..+... ...+.|.|.++..
T Consensus 82 ~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~g~~~~~~--------------~~~~~L~i~~v~~ 146 (204)
T 3sgj_C 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGKGRKYF--------------HHNSDFYIPKATL 146 (204)
T ss_dssp EEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCE-EEEEEETTEEEEEE--------------EECCCEEESSCCG
T ss_pred EEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCc-eEEEEECCcEeecc--------------cCCceEEECcCCc
Confidence 889998888887666678899999999999977754 6 89999999987531 1136899999999
Q ss_pred CCCEEEEEEEEc-CCCCeEEEEEEEecCC
Q psy17146 701 DHFGVYNCSVSN-PYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 701 ~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~ 728 (1011)
+|+|.|+|.|.| ..+..+..+.|.|.+.
T Consensus 147 ~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 147 KDSGSYFCRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred ccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence 999999999999 5556677888888643
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=192.50 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=145.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-CCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-DDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~D~ 102 (1011)
..+|.|...|.++.+.+|++|+|.|.+.+ +.+.+.|++++..+.. ...|+.+... ..+..+|.|.+++. +|+
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-----~~~~~~~~~~-~~~~~~L~i~~v~~~~d~ 77 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-----TQSRYTVLEQ-PGGISILRIEPVRAGRDD 77 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT-----TSTTEEEEEE-TTTEEEEEESSCCTTTTC
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC-----CcceeEEEEc-CCCeEEEEEEecCCCCcC
Confidence 45799999999999999999999999986 6679999999987641 2356666543 23557899999999 999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+..+. ..+..+.|.|...+. .|.+. .+....+.+|+.+.|.|. +.+.|.+.+.|+|++..+..
T Consensus 78 G~Y~C~~~n~~g~---~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~~~~ 153 (212)
T 2yd1_A 78 APYECVAENGVGD---AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCK-AIGNPTPNIYWIKNQTKVDM 153 (212)
T ss_dssp SEEEEEEECSSSC---EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCE-EECSSCCEEEEEETTEECCT
T ss_pred ceEEEEEEeCCCC---eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEE-eccCCCCeEEEEECCeEccc
Confidence 9999999886421 256778888887643 24444 334667889999999999 67999999999999887754
Q ss_pred c-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC
Q psy17146 178 N-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
. .++ ....+.|.|.+++.+|+|.|+|.|.|..|... +..+.|.|+..
T Consensus 154 ~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~l~V~~~ 201 (212)
T 2yd1_A 154 SNPRY----------SLKDGFLQIENSREEDQGKYECVAENSMGTEH-SKATNLYVKVR 201 (212)
T ss_dssp TSTTE----------EEETTEEEECSCCGGGCEEEEEEEEETTEEEE-CCCEEEEEEC-
T ss_pred CCCeE----------EccCCeEEEccCChhhCEEEEEEeecCCCcee-EEEEEEEEEec
Confidence 2 222 11123899999999999999999999998763 22356666544
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=194.57 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=141.2
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEEeecCCCCCEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..|...+.++.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ....+.|.|.+++.+|+|.|+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~ 81 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence 456777889999999999999999999999999999986631 112378999999999999999
Q ss_pred EEEEec-CCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEE-EEecCCCCeEEEEECCe-EecccCC-------C
Q psy17146 608 CKASVM-GFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECS-AFSIPPPEKVTWSYRGE-EIGVGSS-------D 676 (1011)
Q Consensus 608 C~a~n~-~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~-~~g~p~p~~v~W~~~g~-~l~~~~~-------~ 676 (1011)
|.|.|. +....+..+.|.|..+|.+. .+....+.+|+.++|.|. +.|.|.| .+.|+++|. .+..... .
T Consensus 82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~l~~~~~~~~~~~~~ 160 (212)
T 1f97_A 82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNS 160 (212)
T ss_dssp EEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSS
T ss_pred EEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCC-EEEEEeCCcccccccccccccccCc
Confidence 999993 22356778899999888775 234456889999999999 7999999 999999999 7764322 1
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEEecC
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIMLKPQK 727 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~ 727 (1011)
++.+. ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 161 ~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 161 SFTID------PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CEEEC------TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred eeEec------CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 22221 224789999999999999999999999988 6677777754
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=195.23 Aligned_cols=183 Identities=18% Similarity=0.319 Sum_probs=145.5
Q ss_pred EecceeecCC----ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------ecCCCcEEEeecCCCCCEEEE
Q psy17146 542 TYGPRFRARP----YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 542 ~~~P~~~~~p----~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.|...+ ....+.+|++++|.|.+.+.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 4578887665 78899999999999999999999999999985542 223457999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCC----Ceeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGR----PTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDD 677 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~----P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~ 677 (1011)
|.|.| ..+.....+.|.|..+ |.+.. +....+..|+.++|.|.+.|.|.| .+.|++ +|..+.......
T Consensus 93 C~~~n-~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~ 170 (231)
T 3ojm_B 93 CVVEN-EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPY 170 (231)
T ss_dssp EEEEE-TTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEEEEECCBTTBSBCTTSCBC
T ss_pred EEEec-ccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEEEECCCCCCccccCCCcce
Confidence 99999 5667778888888653 34432 456778999999999999999999 999999 888776433222
Q ss_pred eEEecC-CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 678 YSVLED-PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 678 ~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
...... .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 171 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (231)
T 3ojm_B 171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220 (231)
T ss_dssp EEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence 222211 1112234689999999999999999999999999999999984
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=189.87 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=137.3
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
.+|.+...|....+.+|+.++|.|.+.+.|.+. +.|+|++..+. ...+.|.|.+++.+|+|.|+|.|.| .. .+..
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n-~~--~s~~ 81 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL-ST--LSDP 81 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-SSCSEEEESSCCGGGCEEEEEECSS-SC--CCCC
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc-CCceEEEEeCCCcccCEEEEEEeeC-Cc--cccc
Confidence 357778888888999999999999999998876 88999986553 5678999999999999999999997 22 3567
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+.|.|..++.+.......+.+|+.++|.|.+.+.|++..+.|+|+|..+... .....|.|.++..+
T Consensus 82 ~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--------------~~~~~L~i~~v~~~ 147 (175)
T 1fnl_A 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------------HHNSDFHIPKATLK 147 (175)
T ss_dssp EEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------------EECCCEEESSCCGG
T ss_pred EEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--------------CCCCEEEEcccChh
Confidence 7888877777666566778999999999999988664489999999988521 11368999999999
Q ss_pred CCEEEEEEEEcCCC-CeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYG-SDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G-~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|..| ..+..+.|.|.+
T Consensus 148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 148 DSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred hCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 99999999999766 456677777743
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=195.29 Aligned_cols=193 Identities=17% Similarity=0.233 Sum_probs=149.6
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.|.|..+...+..+.
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~ 97 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEE
T ss_pred CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEE
Confidence 56788889999999999999999999999999999999877666677889999999999999999999875555566666
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
+.|...+......... ....+|.+..
T Consensus 98 l~V~~~~~~~~~~~~~------------------------------------------------------~~~~~p~~~~ 123 (218)
T 3k0w_A 98 LDVCDIPESFQRSVDG------------------------------------------------------VSESKLQICV 123 (218)
T ss_dssp EEEECCCGGGCTTCCS------------------------------------------------------BCCSSCEEEE
T ss_pred EEEEccCccccccccc------------------------------------------------------ccCCCceEEE
Confidence 6665443211100000 0012366777
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
.+....+.+|+.++|.|.+.+.|.+.+.|++++..+.......|.|.++..+|+|.|+|.|.|..+...+..+.|.|...
T Consensus 124 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp CCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred CCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence 78888999999999999999999999999999987777777899999999999999999999943344788899999886
Q ss_pred CeeecCC
Q psy17146 630 PTIISHR 636 (1011)
Q Consensus 630 P~i~~~~ 636 (1011)
+.+..+.
T Consensus 204 ~~~~~P~ 210 (218)
T 3k0w_A 204 NNLGHPD 210 (218)
T ss_dssp -------
T ss_pred ccCCCCC
Confidence 6665443
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=197.04 Aligned_cols=192 Identities=18% Similarity=0.275 Sum_probs=137.8
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|++.... ........+|+.+.. ..+.++|+|.++
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 101 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSL 101 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEECCC
Confidence 4667788999999999999999999984 66999999541110 011112235777663 336779999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCcee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTV 175 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l 175 (1011)
+.+|+|.|+|.+.+... ......+.|.|...+.+|.+.. .+...+.+|+.+.|.|.+.++.| .+.++|+|++..+
T Consensus 102 ~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~ 178 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTP---PTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ 178 (237)
T ss_dssp CGGGCEEEEEEECSSSS---CEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred ChhhCeEEEEeeccCCc---eEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCC
Confidence 99999999999987532 1234456788877666666643 33334446889999999555566 6899999999887
Q ss_pred eece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 176 MSNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
..+. ............+...+.|.|.....+|+|.|+|.|.|......
T Consensus 179 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 227 (237)
T 3sob_L 179 SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 227 (237)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence 6543 22212222334566678899999999999999999999877553
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-21 Score=193.41 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=117.9
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+. ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 46788877764 7899999999999998876 999999986552 2345789999999999999999999842
Q ss_pred C-CceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 615 F-PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 615 ~-~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
. ...+..+.|.|.. +|.|...+...+.+|+.++|.|.+.+.| + .+.|+|+|..+..... ...... .....
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~-~~~W~k~g~~~~~~~~-~~~~~~---~~~~~ 155 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-D-RFILTEEGDHKLSWTL-DSQLTP---SGQFQ 155 (196)
T ss_dssp EECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-S-EEEEEEC---CCEEEE-ECEECT---TSCEE
T ss_pred CcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-C-EEEEEccCCccccccc-cccccc---CCCce
Confidence 2 2346677888876 5777765556789999999999999998 7 8999999988742110 001111 12345
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
..|.|.+++.+|+|.|+|.|.|..+
T Consensus 156 ~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 156 ALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEECCCCBTTBCEEEEEEEEETTE
T ss_pred eEEEeeecCcccCeeEEEEEEccCC
Confidence 7999999999999999999999876
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=190.58 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=129.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.|... .++.+.+|+.+.|.|.+.. |.+.+.|+||+.++.. .+|+.+..+...+.++|.|.+++.+|+|.|
T Consensus 4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~------~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y 76 (207)
T 3rbs_A 4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE------GPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 76 (207)
T ss_dssp --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECS------SSSCEEEECTTTCEEEEEESCCCGGGCEEE
T ss_pred CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECcc------CCCEEEEEeCCCCEEEEEECCCChhhCEEE
Confidence 555554 4789999999999999974 7789999999988743 346666555556778999999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcC------------------CCCCeeecCCeeeecCCCcEEEEEEccCCC-CCcEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVP------------------PDPPRIVQGDTLYTTEDREIELECISANGK-PPAEI 166 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~------------------p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~-P~~~i 166 (1011)
+|.+.|+. .+....+.+... ..+|.+.......+.+|+.+.|.|. +.|. |.|++
T Consensus 77 ~C~a~Ng~------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~-v~g~~P~p~i 149 (207)
T 3rbs_A 77 TFQLQDGK------ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCK-VANIKKETHI 149 (207)
T ss_dssp EEEEEETT------EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEE-EESCCTTCEE
T ss_pred EEEEECCC------eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEE-EeCCCCCCEE
Confidence 99999831 222233322100 0134443333467889999999999 5677 99999
Q ss_pred EEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 167 TWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 167 ~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
+|+|++..+..+.++. ..+ ...+|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 150 ~W~k~g~~l~~~~~~~---~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 202 (207)
T 3rbs_A 150 VWYKDEREISVDEKHD---FKD-----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202 (207)
T ss_dssp EEEETTEEECCCCCCC---CSS-----EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEECCEECCCCCceE---cCC-----CEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEE
Confidence 9999999886644321 111 1357999999999999999999999997744443
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=199.74 Aligned_cols=173 Identities=19% Similarity=0.348 Sum_probs=123.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~I 595 (1011)
++.+...|..+.+.+|++++|.|.+.+.| .+.+.|+|++.. . .. ....+|+|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 117 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI 117 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence 55666778889999999999999999998 489999985421 1 11 12237999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
.+++.+|+|.|+|.|.|...........|.|.. +|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||.++
T Consensus 118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 197 (254)
T 2c1o_A 118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 197 (254)
T ss_dssp SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEE
T ss_pred CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcc
Confidence 999999999999999984322233345677754 677663 333334468899999999985 443479999999988
Q ss_pred cccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 671 GVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
............+ .++ ..+.|.|.++..+|+|.|+|.|.|......
T Consensus 198 ~~~~~~~~~~~~~--~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 246 (254)
T 2c1o_A 198 QNGVLNSWTDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 246 (254)
T ss_dssp CTTEEEEECCCCT--TTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred cCcceeccccccC--CCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCc
Confidence 6420011111110 111 257899999999999999999999987653
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=187.24 Aligned_cols=187 Identities=16% Similarity=0.254 Sum_probs=139.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-C-CCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-K-TGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~-~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
+++.|.+.|.++.+.+|++++|.|.+.+ + .+.+.|++ ++..+.. ...|+.+... ..+..+|.|.+++.+|+
T Consensus 1 rp~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 74 (191)
T 1epf_A 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-----NQQRISVVWN-DDDSSTLTIYNANIDDA 74 (191)
T ss_dssp --CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-----BSSSEEEEEE-ETTEEEEEECSCCGGGC
T ss_pred CceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-----CCCeEEEEEC-CCCceEEEEccCCcccC
Confidence 3577999999999999999999999998 3 57999999 7766532 2346665543 23567899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+... ...+..+.|.|..+|. ....+....+.+|+.+.|.|. +.++|.+.+.|+|++..+.......
T Consensus 75 G~Y~C~~~~~~~---~~~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~ 148 (191)
T 1epf_A 75 GIYKCVVTAEDG---TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVR 148 (191)
T ss_dssp EEEEEEEEETTT---EEEEEEEEEEEECCSE--EEECCSSEECCTTSCEEECCE-EECSSCCEEEEEETTEEGGGGCCTT
T ss_pred EEEEEEEEcCCC---cceEEEEEEEeecCce--EecCCCcEeecCCCeEEEEEE-ECCCCCCEEEEEECCEEeeccCCce
Confidence 999999998642 3456667777775432 233445667889999999999 6699999999999988775422111
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.....+ +.|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 149 ~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 149 FIVLSN-------NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp EEECTT-------SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred EEEecC-------CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 111222 269999999999999999999998766555555554
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=188.61 Aligned_cols=162 Identities=18% Similarity=0.296 Sum_probs=128.6
Q ss_pred CCCcEEEEEEEecC-CCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 558 RGAGVNLLCDVDGN-PAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~-p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
.++.+.|.|.+.+. |.+.+.|+|++..+.. .....|.|.+++.+|+|.|+|.|.| ..+.....+.|.|.
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n-~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD-GKTGHQKTVDLSGQ 94 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEC-SSCEEEEEEEECHH
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEec-CCcceEEEEEEEEe
Confidence 35567888888875 4778889888754322 1224599999999999999999999 66777777777765
Q ss_pred C--------------------CCeee-c-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 628 G--------------------RPTII-S-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 628 ~--------------------~P~i~-~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
. +|.+. . +....+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~--~~~~~~~~~-- 169 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQ--TDHCNLKFE-- 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECC--CSSEEEEEE--
T ss_pred eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECcc--CCCEEEEEc--
Confidence 2 34443 3 345679999999999999999999 8999999999984 455665543
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 170 -~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 170 -AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp -TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 2445799999999999999999999999999999998874
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=184.11 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=132.4
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCceeecC----CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVGN----SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~~~~----~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
...+.+|+.++|.|.+.+.|.| .+.|+|++..+.... ...|.|. +.+|+|.|+|.|.| ..+..+.|.|
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n----~~~~~~~l~V 80 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLP----EPMGTANIQL 80 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEES----TTSCEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEEC----CcCcEEEEEE
Confidence 3567899999999999998888 999999986654332 2356555 68999999999998 3447789999
Q ss_pred cCCCeeecC-CceeeecCCcEEEEEEEEecC-CCCeEEEEE---CCeE-ecccCCCCeEEecCCcCccceeEEEEcCCC-
Q psy17146 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIP-PPEKVTWSY---RGEE-IGVGSSDDYSVLEDPLKEGIKSTLIIRESR- 699 (1011)
Q Consensus 627 ~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~---~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~- 699 (1011)
..+|.+... ....+.+|+.++|.|.+.|.| .| .+.|++ ++.. +......++.+.. .+..+.|.|.++.
T Consensus 81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNGSESRFFVSS----SQGRSELHIENLNM 155 (184)
T ss_dssp CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTTGGGTEEEEE----ETTEEEEEECSCCT
T ss_pred ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCC-eEEEEEcCCCCCEEeecCCCCEEEEEe----cCCeeEEEEeeccc
Confidence 999998744 566789999999999999999 67 999999 5544 4333346677664 3445799999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|.+|.....+.|.|.+
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEec
Confidence 9999999999999999999999998853
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=193.22 Aligned_cols=174 Identities=22% Similarity=0.392 Sum_probs=137.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcE----EEeecCCCCCEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNL----TLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L----~I~~v~~~d~G~Y~C~ 609 (1011)
.+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+.. ..++.+ +|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 578999999999999999999999999999999999999855432 222333 6888999999999999
Q ss_pred EEecCCCc-eeeEEEEEEcC-CCeee-cCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEeccc------CCCCeE
Q psy17146 610 ASVMGFPE-VGAEATVYLKG-RPTII-SHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVG------SSDDYS 679 (1011)
Q Consensus 610 a~n~~~~~-~s~~~~l~V~~-~P~i~-~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~------~~~~~~ 679 (1011)
|.|. .+. .+..+.|.|.. +|.+. .+....+..|+.++|.|.+ .|.|.| .+.|+++|..+... ...++.
T Consensus 88 ~~n~-~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~ 165 (217)
T 2vr9_A 88 AKNR-VGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRVR 165 (217)
T ss_dssp EEET-TEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEECCCCCC---CCCSEE
T ss_pred EecC-CCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCCCcccccccccCCcEE
Confidence 9994 433 34456666654 34443 4566778999999999999 899999 99999999998742 223333
Q ss_pred EecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 680 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.. .+.|.|.++..+|+|.|+|.|.|.+|....+..+.+
T Consensus 166 ~~~-------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 166 IVD-------GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp EET-------TTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred ecC-------CCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 332 258999999999999999999999998876655544
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=186.34 Aligned_cols=187 Identities=17% Similarity=0.293 Sum_probs=142.9
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..++.+..+ .+..+|.|.+++.+|+|.
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------~~~~~~~~~--~~~~~L~i~~~~~~d~G~ 77 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ------SRKYKMSSD--GRTHTLTVMTEEQEDEGV 77 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECC------CSSEEEEES--SSEEEEEEECCSGGGCEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCC------CccEEEEeC--CCEEEEEEecCCccCCEE
Confidence 4789999999999999999999999976 6679999999977632 245555543 356689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe-eecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPR-IVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~-i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.. +..+..+.|.|...|.... ........+.+|+.+.|.|. +.++|.+.+.|+|++..+..+.++..
T Consensus 78 Y~C~~~n~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~ 152 (197)
T 3lcy_A 78 YTCIATNEV----GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM-YIGRPVPAMTWFHGQKLLQNSENITI 152 (197)
T ss_dssp EEEEEECSS----CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE-EEEESCCEEEEEETTEECCCCSSEEE
T ss_pred EEEEEECCC----CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE-EeeeeCCeeEEeECCEECCCCCceEE
Confidence 999998753 3355667777776543221 12234667789999999999 67899999999999988866555443
Q ss_pred eeecCCceEEEEEEEEEeeccC-cCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKE-HHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
..... .+.|.|.++.. +|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 153 ~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~ 195 (197)
T 3lcy_A 153 ENTEH------YTHLVMKNVQRKTHAGKYKVQLSNVFGTV--DAILDVEIQ 195 (197)
T ss_dssp EECSS------EEEEEESSCCHHHHCEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred EEcCC------EEEEEEccccchhhCceEEEEEEcCcCce--EEEEEEEEe
Confidence 33222 26899999985 89999999999999976 445555543
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=191.89 Aligned_cols=183 Identities=19% Similarity=0.319 Sum_probs=143.4
Q ss_pred ecceeecC----CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 543 YGPRFRAR----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 543 ~~P~~~~~----p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
.+|.|..+ +....+.+|+++.|.|.+.+.|.+.+.|+|++..+. .....+|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 46776644 457889999999999999999999999999985432 2345689999999999999999
Q ss_pred EEEecCCCceeeEEEEEEcC----CCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCCe
Q psy17146 609 KASVMGFPEVGAEATVYLKG----RPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDDY 678 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~----~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~~ 678 (1011)
.|.| ..+.....+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|.| .+.|++ +|..+.......+
T Consensus 90 ~~~~-~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~~ 167 (241)
T 3grw_A 90 VVEN-KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYV 167 (241)
T ss_dssp EEEE-TTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEEEEECCSSSCSSCTTTCCCE
T ss_pred EEee-cCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEEEEcccCCCcccCCCCceee
Confidence 9999 566777888888865 34443 2456778899999999999999999 999999 8887765333332
Q ss_pred EEecCC--cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 679 SVLEDP--LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 679 ~~~~~~--~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
...... ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 168 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 218 (241)
T 3grw_A 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218 (241)
T ss_dssp EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred eeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence 221110 0112357899999999999999999999999999999999853
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=188.17 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=130.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+. ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 36777777764 7899999999999999876 799999987652 3456889999999999999999999942
Q ss_pred --CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 615 --FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 615 --~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
....+..+.|.|.. +|.+.......+.+|+.++|.|.+.+. .+ .+.|+|+|..+... ..++....+ .+.
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~-~v~W~k~g~~~~~~-~~~~~~~~~---~~~ 155 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FD-GFILCKEGEDEHPQ-CLNSQPHAR---GSS 155 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CS-EEEEEEC------C-EEEC---------CC
T ss_pred CCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-Cc-EEEEEECCCccCCc-cccccccCC---Ccc
Confidence 12456778888876 577765555678999999999999988 66 89999999887421 111111111 223
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCC-----eEEEEEEEe
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGS-----DSVEIMLKP 725 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V 725 (1011)
...|.|.++..+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp EEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred eeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 579999999999999999999999772 255666655
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=188.94 Aligned_cols=174 Identities=25% Similarity=0.365 Sum_probs=139.5
Q ss_pred EEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------eccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 387 V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
+..+|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++.... ......|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence 3457888888888999999999999999999999999999874422 23445699999999999999999997
Q ss_pred cCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEE
Q psy17146 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538 (1011)
Q Consensus 459 ~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~ 538 (1011)
..+...+ ....
T Consensus 84 ~~~~~~~---------------------------------------------------------------------~~~~ 94 (192)
T 2iep_A 84 GVGGAVE---------------------------------------------------------------------SCGA 94 (192)
T ss_dssp SSSCCEE---------------------------------------------------------------------EEEE
T ss_pred CCCceeE---------------------------------------------------------------------eEEE
Confidence 4332222 2334
Q ss_pred EEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 539 l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+ ....+++|.|.++..+|+|.|+|.|.|
T Consensus 95 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 174 (192)
T 2iep_A 95 LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174 (192)
T ss_dssp EEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEc
Confidence 55666777777788888999999999999999999999999998543 234567899999999999999999999
Q ss_pred cCCCce-eeEEEEEEcCCC
Q psy17146 613 MGFPEV-GAEATVYLKGRP 630 (1011)
Q Consensus 613 ~~~~~~-s~~~~l~V~~~P 630 (1011)
. .|.. +..+.|.|..||
T Consensus 175 ~-~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 175 S-LGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp T-TEEEECCCEEEEEEC--
T ss_pred C-CCcEEEEEEEEEEEeCC
Confidence 4 5554 667889888776
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=188.01 Aligned_cols=185 Identities=21% Similarity=0.322 Sum_probs=134.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+... ...|+.+..+ .+|.|.+++.+|+|.|
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~~-----~~L~i~~~~~~d~G~Y 72 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----SDNRFAMLAN-----NNLQILNINKSDEGIY 72 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBC----CCTTEEECTT-----SCEEETTCCGGGCEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceec----cCCeEEEecC-----CCEEEeeCCHhHCcEE
Confidence 478999999999999999999999987 66799999998765321 2346665432 2699999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+...+ ......+.+.|..+|............+.+|+.+.|.|. +.+.|.+.+.|+|++..+....++...
T Consensus 73 ~C~~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~v~W~~~g~~~~~~~~~~~~- 148 (189)
T 2v5t_A 73 RCEGRVEARG--EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR-ASGSPEPAISWFRNGKLIEENEKYILK- 148 (189)
T ss_dssp EEEEEETTTT--EEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECE-EEEESCCEEEEEETTEECCCSSSEEEE-
T ss_pred EEEEEEcCCC--ceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEE-EccCCCCeEEEEECCEECcCCCcEEEe-
Confidence 9999986433 233455667776654221111112456788999999999 678899999999999887665544322
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.+. ++|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 149 -~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 149 -GSN------TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp -TTT------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -cCC------CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 122 379999999999999999999999977555555443
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=190.06 Aligned_cols=175 Identities=22% Similarity=0.370 Sum_probs=137.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------ecCCCc-----EEEeecCCCCCEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------VGNSPN-----LTLLMTSDDLAGRY 606 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------~~~~~~-----L~I~~v~~~d~G~Y 606 (1011)
.+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+. ...++. |.|.++..+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 57889999999999999999999999999999999999985432 122333 44456689999999
Q ss_pred EEEEEecCCCc-eeeEEEEEEcCC-Ceee-cCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 607 YCKASVMGFPE-VGAEATVYLKGR-PTII-SHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 607 ~C~a~n~~~~~-~s~~~~l~V~~~-P~i~-~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
+|.|.|. .+. .+..+.|.|..+ +.+. .+....+..|+.++|.|.+ .|.|.| .+.|+++|..+... ..++....
T Consensus 88 ~C~~~n~-~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~l~~~-~~~~~~~~ 164 (212)
T 2v9r_A 88 VCVARNY-LGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDK-DERITIRG 164 (212)
T ss_dssp EEEEEET-TEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEEEETTEEECTT-STTEEEET
T ss_pred EEEEECC-CCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEEEECCccCCCC-cceEEccC
Confidence 9999994 443 355677777653 3333 4566779999999999998 899999 99999999998742 33443322
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE-EEEEEecCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV-EIMLKPQKS 728 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~ 728 (1011)
+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|...
T Consensus 165 --------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 165 --------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp --------TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred --------CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence 58999999999999999999999998654 478887543
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=188.08 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=132.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...+.|.|.+++.+|+|.|+|.|.|...
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence 5777777877 8999999999999998 7789999999875431 3457899999999999999999999422
Q ss_pred -CceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 616 -PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 -~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
...+..+.|.|.. +|.+.......+.+|+.++|.|.+.+. .+ .+.|+|+|..+.... ....... ....+
T Consensus 83 ~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~~-~~~~~~~----~~~~~ 155 (196)
T 3p2t_A 83 WSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-MD-TFLLCKERAAHPLLC-LRSEHGA----QQHQA 155 (196)
T ss_dssp EBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-EE-EEEEEETTCCCGGGS-EEEEEEE----EEEEE
T ss_pred ccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-CC-EEEEEeCCCccccee-ecccccc----cCcce
Confidence 3557778888853 567765444578899999999999885 44 799999998775321 1111110 12357
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCC-----CeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYG-----SDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V 725 (1011)
.|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 156 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 156 EFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp EEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred EEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 899999999999999999999987 3445566655
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-21 Score=188.35 Aligned_cols=167 Identities=15% Similarity=0.204 Sum_probs=133.2
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceee
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 620 (1011)
..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++..+. ..++.|.|.+++.+|+|.|+|.|.| .. .+.
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~-~~--~s~ 77 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGEYKCQHQQ-VN--ESE 77 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS-CCSSEEEECSCCGGGCEEEEEECTT-SS--CCC
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC-CCceEEEEeccceecCEEEEEEcCC-cc--ccc
Confidence 356788888888899999999999999999886 699999986543 4578999999999999999999987 33 355
Q ss_pred EEEEEEcCCCeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.+.|.|..++.+.......+.+|+.++|.|.+. +.|.+ .+.|+++|..+.... ..+.|.|.++.
T Consensus 78 ~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~--------------~~~~L~i~~v~ 142 (176)
T 1f2q_A 78 PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY-KVIYYKDGEALKYWY--------------ENHNISITNAT 142 (176)
T ss_dssp CEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEE-EEEEEETTEECCSCC--------------CSSEEEESSCC
T ss_pred cEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCce-EEEEEECCEEEeeec--------------CCCeEEECCCC
Confidence 677788777777655667788999999999995 55666 999999999885311 13689999999
Q ss_pred CCCCEEEEEEEEcCCC-CeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYG-SDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|..| ..+..+.|.|..
T Consensus 143 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 143 VEDSGTYYCTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cccCEEEEEEEEeCCcceEecCEEEEEec
Confidence 9999999999999754 456667887754
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=186.63 Aligned_cols=165 Identities=18% Similarity=0.321 Sum_probs=134.9
Q ss_pred cceEeeCCCceEecCCCcEEEEeecC-CCCCCceEEEeCCCceeec----------c--------CCcEEEEeeccCCCe
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG----------N--------SPNLTLLMTSDDLAG 450 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~~----------~--------~~~L~I~~v~~~d~G 450 (1011)
+|.|...|.+..+.+|+++.|.|.+. |.|.+.+.|+|++..+... . ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 67889999999999999999999998 9999999999998543211 1 357999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|..+...+
T Consensus 82 ~Y~C~~~~~~~~~~~----------------------------------------------------------------- 96 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVS----------------------------------------------------------------- 96 (195)
T ss_dssp EEEEEEEETTEEEEC-----------------------------------------------------------------
T ss_pred EEEEEEEeCCCceec-----------------------------------------------------------------
Confidence 999999975332222
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeec----CCCcEEEeecCCCCCEE
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVG----NSPNLTLLMTSDDLAGR 605 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~----~~~~L~I~~v~~~d~G~ 605 (1011)
..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.| .+.|+|++..+... ..+.|.|.+++ |+|.
T Consensus 97 ----~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~ 170 (195)
T 2c5d_C 97 ----QPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSS 170 (195)
T ss_dssp ----CCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEE
T ss_pred ----ccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCce
Confidence 2245566667777777888899999999999999999999 99999998765443 56789999887 8999
Q ss_pred EEEEEEecCCCce-eeEEEEEE
Q psy17146 606 YYCKASVMGFPEV-GAEATVYL 626 (1011)
Q Consensus 606 Y~C~a~n~~~~~~-s~~~~l~V 626 (1011)
|+|.|.| ..|.. +..+.|.|
T Consensus 171 Y~C~a~N-~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 171 FSCEAHN-AKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEEE-TTEEEECCCEEEEE
T ss_pred EEEEEEc-CCCceEEEEEEEEE
Confidence 9999999 56666 47888888
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=186.60 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=134.1
Q ss_pred eecCCceEEEcCCCcEEEEEE-EecCCC-CeEEEEecCCcee---------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCD-VDGNPA-PEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~-~~g~p~-p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+...+..+.+.+|+.+.|.|. +.+.|. +.+.|+|++..+. ...+++|.|.+++.+|+|.|+|.|.|...
T Consensus 11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 90 (201)
T 3s97_C 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI 90 (201)
T ss_dssp CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence 334567899999999999999 899999 9999999986542 34567899999999999999999999322
Q ss_pred Cce--eeEEEEEEc-------CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 616 PEV--GAEATVYLK-------GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 616 ~~~--s~~~~l~V~-------~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
... ...+.+.+. .+|.+. ......+..|+.++|.|.+.|.|.| .+.|++++..+.. . ..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~--~--~~~~~--- 162 (201)
T 3s97_C 91 TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPS--T--AEIST--- 162 (201)
T ss_dssp TEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCC-EEEEEETTBCCCT--T--CEEET---
T ss_pred CcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCC-ceEEEeCCCcCCC--c--eeecC---
Confidence 221 223444442 345555 3457778999999999999999999 9999999997752 2 22222
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 163 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 163 ---SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp ---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 13689999999999999999999999999999999885
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=195.13 Aligned_cols=191 Identities=17% Similarity=0.252 Sum_probs=132.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++..... .......+|+.+.. ..+.++|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 111 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTL 111 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEE
Confidence 4667777999999999999999999874 378999997521100 00111235777654 3467799
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
+|.+++.+|+|.|+|.+.+.... ..+..+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.+..|.+ +++|+|
T Consensus 112 ~I~~v~~~D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k 188 (252)
T 3bkj_L 112 RISRVEAEDLGVYYCFQASLVPL---TFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 188 (252)
T ss_dssp EESSCCGGGCEEEEEEECSBSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EECCCCcccCEEEEEEEEcCCcc---EECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999999999875321 223345788876554555542 2333344789999999955446664 899999
Q ss_pred CCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+..... ........+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 9987755411111 111222345566889999999999999999999986654
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=185.18 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=120.0
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... . ........+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------~---~~~~~~~~~L~i~~v~~~D~G~Y 73 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ------N---PLEPKNKARFSIPSMTEHHAGRY 73 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEE------C---CCSSTTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccc------c---ccCCccccEEEeccCChhHCeEE
Confidence 46888988875 89999999999999886669999999976532110 0 00123456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+..+. ...+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +.+.| +.+.|+|++..+........ .
T Consensus 74 ~C~a~n~~g~--~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~-~~~~p-~~~~W~k~g~~~~~~~~~~~-~ 148 (196)
T 2d3v_A 74 RCYYYSPAGW--SEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCG-SRLRF-DRFILTEEGDHKLSWTLDSQ-L 148 (196)
T ss_dssp EEEEEETTEE--CBCCCCEEEEEECSSCCCEEEC-----------CEEEEE-ESSCC-SEEEEEEC---CCEEEEECE-E
T ss_pred EEEEeCCCCc--CCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEE-cCCCC-CEEEEEccCCcccccccccc-c
Confidence 9999875321 123566888998866667776555567889999999999 67888 89999999987754222111 1
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
...+ .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 149 ~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 149 TPSG---QFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp CTTS---CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred ccCC---CceeEEEeeecCcccCeeEEEEEEccCC
Confidence 1111 1236899999999999999999999754
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=186.23 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=143.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
..|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .......|+.+.. .+|.|.+++.+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~~~ 75 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS------SGITFSSVTRK 75 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET------TEEEESCCCGG
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec------eeEEEcccCcc
Confidence 35777889999999999999999998 67799999998653110 0112234665543 48999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc-eeeece
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG-TVMSNV 179 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~-~l~~~~ 179 (1011)
|+|.|+|.+.+..+ ....+..+.|.|..+|..+.+... ..+.+|+.+.|.|.+..++|.+.+.|+|++. .+....
T Consensus 76 D~G~Y~C~~~~~~g--~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~ 151 (212)
T 1f97_A 76 DNGEYTCMVSEEGG--QNYGEVSIHLTVLVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA 151 (212)
T ss_dssp GCEEEEEEEEETTS--SSEEEEEEEEEEEBCCCCCEEECC--SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---
T ss_pred cCeEEEEEEEccCC--CcccEEEEEEEEEcCCCCcccCCc--cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccc
Confidence 99999999998643 234577789999988877666443 4577899999999977899999999999998 765533
Q ss_pred eEEEeeecCCceE--EEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe
Q psy17146 180 RVTEEASVDGRRT--TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234 (1011)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~ 234 (1011)
...... ...+.. ...+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|..
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 152 KKTRAF-MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp --CBSC-SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cccccc-cCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 210000 000000 012479999999999999999999999987566777777753
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=207.44 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=147.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCE-EEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAG-RYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~ 614 (1011)
.+|.|...+.+..+.+|+.++|.|.+.|.|.+.+.|++++.... ....++|.|.++..+|+| .|+|.|.| .
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n-~ 235 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN-D 235 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEE-T
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEc-C
Confidence 47888888888999999999999999999999999999986532 234578999999999999 99999999 5
Q ss_pred CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe--cC-CcCcccee
Q psy17146 615 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL--ED-PLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~--~~-~~~~~~~~ 691 (1011)
.+..+..+.|.|..+|.+ ....+..|+.++|.|.+.|.|.| .|+|+++|..+.. ....... .. .......+
T Consensus 236 ~g~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~ 309 (347)
T 2ifg_A 236 VGRAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHG 309 (347)
T ss_dssp TEECCEEECCCCBEEEEE---EECCCEESSSEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEECCCCTTCCCEEE
T ss_pred CCCEEEEEEEEEcCCCee---eeccCccCceEEEEEEeeecCCC-cEEEEeCCEECCC--CcceeeEEEeecCCCcccce
Confidence 677788899999999987 22235689999999999999999 9999999999873 2222221 10 01112367
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.+++.+|+|.|+|.|.|.+|.+++++.|.|.+
T Consensus 310 ~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 310 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred EEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 899999999999999999999999999999998854
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=184.91 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=131.4
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCC-CceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~ 621 (1011)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++.. .....+.|.|.+++.+|+|.|+|.|.|... ...+..
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~ 83 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQ 83 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC-CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCC
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc-ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCC
Confidence 46777777775 7999999999999988 7889999999876 455678999999999999999999999322 345667
Q ss_pred EEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 622 ATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 622 ~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.|.|. .+|.|...+...+.+|+.++|.|.+.+.| + .+.|+|+|..+... ... ......|.|.++
T Consensus 84 ~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~-~-~~~w~k~g~~~~~~--~~~--------~~~~~~L~i~~v 151 (184)
T 2gi7_A 84 LELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-D-QFALYKEGDPAPYK--NPE--------RWYRASFPIITV 151 (184)
T ss_dssp EEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC-C-EEEEEECCCCTTSC--CCC--------EEEEESSSEEEE
T ss_pred EEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC-c-EEEEEECCCcCcce--ecC--------CCceEEEEEccC
Confidence 778884 36777654466788999999999987654 5 89999999887631 111 123478999999
Q ss_pred CCCCCEEEEEEEEcCCCC-----eEEEEEEEe
Q psy17146 699 RHDHFGVYNCSVSNPYGS-----DSVEIMLKP 725 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V 725 (1011)
+.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 152 ~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 152 TAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp TTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred CccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 999999999999998753 245555544
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=193.02 Aligned_cols=181 Identities=18% Similarity=0.310 Sum_probs=139.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEEeecCCCCCEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTLLMTSDDLAGRY 606 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I~~v~~~d~G~Y 606 (1011)
++.|...+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ....+.|.|.+++.+|+|.|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y 83 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence 4566777888999999999999999999999999999986631 11237899999999999999
Q ss_pred EEEEEecC-CCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 607 YCKASVMG-FPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 607 ~C~a~n~~-~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
+|.|.|.. ....+..+.|.|..+|.+.. .....+..|+.++|.|.+ .|.|.| .+.|+++|..+.............
T Consensus 84 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 84 TCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCc-eeEEEECCeeCCCccccceeeecc
Confidence 99999932 34566788889988888763 344568899999999997 899999 999999999887532211110000
Q ss_pred C-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEEe
Q psy17146 684 P-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIMLKP 725 (1011)
Q Consensus 684 ~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~V 725 (1011)
. ......+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 0 001234789999999999999999999999988 44555554
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-20 Score=190.30 Aligned_cols=169 Identities=16% Similarity=0.252 Sum_probs=132.1
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCC----CCeEEEEecCCc----------------e-----------ee------cCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNP----APEITWIHEDSD----------------K-----------VV------GNS 590 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p----~p~v~W~k~~~~----------------~-----------~~------~~~ 590 (1011)
...+..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . .. ...
T Consensus 4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 83 (214)
T 3jz7_A 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD 83 (214)
T ss_dssp --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence 3445678899999999999999887 569999984311 1 11 135
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCe
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~ 668 (1011)
.+|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|..+|.+.. +....+..|+.++|.|.+ .|.|.| .+.|++++.
T Consensus 84 ~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~~~ 161 (214)
T 3jz7_A 84 ASINVTNLQLSDIGTYQCKVKK-APGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPL-QFEWQKLSD 161 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEE-TTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSC-EEEEEECST
T ss_pred ccEEEccCChhhCeEEEEEEEe-CCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCC-EEEEEECCC
Confidence 7799999999999999999999 566778899999999888653 334447899999999999 899999 999999644
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.........+ ......|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 162 ~~~~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 162 SQTMPTPWLA--------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp TCCCCGGGGG--------GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCccCcccee--------ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 3221111111 1123599999999999999999999999999999999885
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=185.42 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=133.8
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-------------------------ceeecCCCcEEEeecCCCCCE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-------------------------DKVVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-------------------------~~~~~~~~~L~I~~v~~~d~G 604 (1011)
.+....+.+|++++|.|...+.+.+.+.|++++. +.....+++|.|.+++.+|+|
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG 84 (208)
T ss_dssp EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence 3445678999999999999999999999998743 112233468999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 605 RYYCKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
.|+|.+.|...+..+..+.|.|..+ |.+...... +..|+.++|.|.+.+.| | .+.|+++|..+. ...++.+.
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p-~i~W~~~g~~l~--~~~~~~~~ 159 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-A-NIQWLFNSQSLQ--LTERMTLS 159 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-C-EEEEEETTEECC--CCSSEEEE
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-C-ceEEEECCEeCC--CCCCeEEc
Confidence 9999999954567778888888766 566654444 88999999999999976 7 899999999987 44566654
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEecC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQK 727 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~ 727 (1011)
.+ ...|.|.++..+|+|.|+|.|.|.+|+. +..++|.|..
T Consensus 160 ~~------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 160 QN------NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp TT------TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred CC------CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence 42 2689999999999999999999999975 4567776643
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-19 Score=180.48 Aligned_cols=191 Identities=19% Similarity=0.278 Sum_probs=136.1
Q ss_pred ceeecCCceeEE-ecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 29 KFAMEPQDQTAV-VGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 29 ~~~~~p~~~~v~-~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
++.+.|.+..+. +|++|+|.|.+.+ +.+.+.|+++... .+ ..+.... ....+|.|.+++.+|+|.|+
T Consensus 2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~-----~~--~~~~~~~----~~~~~L~I~~v~~~D~G~Y~ 70 (202)
T 1vca_A 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-----PL--NGKVTNE----GTTSTLTMNPVSFGNEHSYL 70 (202)
T ss_dssp EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCC-----CC--SSEEEEE----TTEEEEEESSCCGGGCSEEE
T ss_pred eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCC-----Cc--cceEEEc----CCccEEEECcCCHHHCEEEE
Confidence 466777775554 9999999999995 7778999984311 01 1122211 13457999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeeeceeEEEe
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|.+.|.. +..+..+.|+|..+|..+.+... ..+.+|+.++|.|.+.++.|. ++|+|+|++..+.... +..
T Consensus 71 C~a~n~~----~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~-~~~- 142 (202)
T 1vca_A 71 CTATCES----RKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQE-FLE- 142 (202)
T ss_dssp EEEEETT----EEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEE-CCS-
T ss_pred EEEEECC----ceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccc-ccc-
Confidence 9999863 34577899999998877776654 567899999999995544564 4899999998765431 100
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-----eeEEEEEEEEEeCCce
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-----YKVARLKLLVKYAPKV 238 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-----~~s~~v~v~v~~~P~~ 238 (1011)
.............|.|.....+|+|.|+|+|.|..+.. ..+..+.|.|.++|..
T Consensus 143 ~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~ 201 (202)
T 1vca_A 143 DADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201 (202)
T ss_dssp CCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred ccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence 00001123345678899999999999999999988763 2567788899888853
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=189.25 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=121.6
Q ss_pred CcccccCCcEEEEEE---eecCCCccEEEEEECCeecCC-------------------------CcCccEEEEeeccccc
Q psy17146 312 SNRLVEGTDVRLYCK---AEANPSHMKYRWYINDQPVPA-------------------------AASATELYLTNITRHQ 363 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~---~~~~p~~~~i~W~k~g~~l~~-------------------------~~~~~~L~I~~~~~~~ 363 (1011)
+..+..|++++|.|. +.+.|.+ .++|+|+|..+.. ......|.|.+++.+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~- 79 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS- 79 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG-
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH-
Confidence 457889999999995 5566775 9999998753211 123457999999998
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce----------ee
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK----------VV 433 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~----------~~ 433 (1011)
|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+++.|.|.+.|.|.|.|+|++++... ..
T Consensus 80 D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 80 HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred HCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 99999999999999999999999999999998888889999999999999999999999999876422 23
Q ss_pred ccCCcEE---EEeeccCCCeEEEEEEEEcCCcc
Q psy17146 434 GNSPNLT---LLMTSDDLAGRYYCKASVMGFPE 463 (1011)
Q Consensus 434 ~~~~~L~---I~~v~~~d~G~Y~C~a~n~~~~~ 463 (1011)
..++.|. |.++..+|+|.|+|.|.|..+..
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a 192 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 192 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 3345554 46899999999999999976543
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=181.23 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=133.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
.|.+...|....+.+|+.++|.|.+.+.| .+.+.|+|++..+. .....+.|.+++.+|+|.|+|.|.|. ..+..+
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~-~~~~~~~~~~~~~~d~G~Y~C~~~~~---~~s~~~ 79 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-THTQPSYRFKANNNDSGEYTCQTGQT---SLSDPV 79 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECT-TCCSSEEEEECCGGGCEEEEEEETTS---BCCCCE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcc-cCccceEEEecccccCeEEEEEEeCC---CceEeE
Confidence 35566677778899999999999999997 67999999886543 34567889999999999999999872 345568
Q ss_pred EEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 623 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 623 ~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.|.|..+|.+.......+.+|+.++|.|.+.+. |.+ .+.|+++|..+.... ....|.|.++..+
T Consensus 80 ~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~ 144 (170)
T 3ry4_A 80 HLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLV-KVTFFQNGKSQKFSH--------------LDPTFSIPQANHS 144 (170)
T ss_dssp EEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEE-EEEEEETTEEEEEES--------------SCCEEEESSCCGG
T ss_pred EEEEECCceEecCCCceeecCCeEEEEEECCCCCCCc-eEEEEECCeEccccC--------------CCCeEEEEecccc
Confidence 888988888776667778899999999999554 556 999999999876311 1368999999999
Q ss_pred CCEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 702 HFGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
|+|.|+|.|.|..|. .+..+.|.|
T Consensus 145 d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 145 HSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEEEEeCcCccccccEEEEE
Confidence 999999999999996 566677765
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=183.92 Aligned_cols=159 Identities=15% Similarity=0.309 Sum_probs=133.9
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
..+.+|+.++|.|.+.+.|.+..+.|+|+|..+... ...|.|.+++.+ |+|.|+|.+.| +..+..+.|.|..+|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--~~~L~i~~v~~~-D~G~Y~C~a~n--~~~s~~~~l~V~~~p~ 91 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--ASSYFIDAATVD-DSGEYRCQTQL--STLSDPVQLEVHIGWL 91 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--SSEEEESSCCGG-GCEEEEEEETT--SBCCCCEEEEEECSSE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--ccEEEEeccccc-CCEEEEEEeCC--CcccccEEEEEecCce
Confidence 679999999999999999877569999999998763 389999999998 99999999987 4556788899998887
Q ss_pred EeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
+...+. ..+.+|+.++|.|.+.+. |.+.+.|+|++.... ......|.|.+++.+|+|.|+|.|.|......+..+.|
T Consensus 92 ~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l 170 (204)
T 3sgj_C 92 LLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170 (204)
T ss_dssp EEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred EecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEE
Confidence 766665 678899999999999655 668999999997653 44578899999999999999999999666778888888
Q ss_pred EEcCCCe
Q psy17146 471 YLKGRPT 477 (1011)
Q Consensus 471 ~v~~~p~ 477 (1011)
.|..+|.
T Consensus 171 ~V~~~~~ 177 (204)
T 3sgj_C 171 TITQGLA 177 (204)
T ss_dssp EEEC---
T ss_pred EEeCcCC
Confidence 8876554
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=181.72 Aligned_cols=178 Identities=26% Similarity=0.300 Sum_probs=132.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .+..+..+......+|.|.+++.+|+|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 75 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL------DQLYIPVSEQHWIGFLSLKSVERSDAGRY 75 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS------EEEEEEEETTEEEEEEEESSCCGGGCEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC------CceEEEecCCCceEEEEEeecCcccCeEE
Confidence 477889999999999999999999997 66799999999776432 34444444434457899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+... ...+..+.|.|..+|. ....+....+.+|+.+.|.|. +.+.|.+ .+.|+|++..+.....
T Consensus 76 ~C~~~~~~~---~~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~~v~W~~~~~~~~~~~~---- 145 (182)
T 1rhf_A 76 WCQVEDGGE---TEISQPVWLTVEGVPF--FTVEPKDLAVPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAP---- 145 (182)
T ss_dssp EEEESSCTT---CEECCCEEEEEECSCE--EEECCCCEEECTTCCEEEEEE-EECSSSCCEEEEEETTEECSCSEE----
T ss_pred EEEEEcCCC---cEEEEEEEEEEecCCe--EEecCcceEecCCCEEEEEeE-ecCCCCCCEEEEEcCCeECCCCCC----
Confidence 999988532 2345678888887542 233345677889999999999 6789999 9999999877744321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
....|.|.++ +|+|.|+|.|.|..|... +..+.|.|
T Consensus 146 ---------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~-s~~~~l~V 181 (182)
T 1rhf_A 146 ---------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS-SRTATVHL 181 (182)
T ss_dssp ---------SSEEEEECCC--SSCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred ---------CceEEEEecc--ccCeEEEEEEECCCCCcc-cceEEEEe
Confidence 1258999887 589999999999988652 23444443
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=186.57 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=127.3
Q ss_pred CCceEEEcCC--CcEEEEEEEecCCCCeEEEEec---CC------ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 550 RPYSVQVDRG--AGVNLLCDVDGNPAPEITWIHE---DS------DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 550 ~p~~~~v~~G--~~~~l~C~~~g~p~p~v~W~k~---~~------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
.|..+.+.+| ++++|.|.+.+ |.+.+.|+++ +. .........|.|.+++.+|+|.|+|.|.|.+....
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence 4578899999 99999999986 7799999885 31 12234457899999999999999999998433344
Q ss_pred eeEEEEEEcC--CCeee-cC-CceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCC-eEEecCCcC---ccc
Q psy17146 619 GAEATVYLKG--RPTII-SH-RTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDD-YSVLEDPLK---EGI 689 (1011)
Q Consensus 619 s~~~~l~V~~--~P~i~-~~-~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~---~~~ 689 (1011)
+..+.|.|.. +|.+. .+ ....+.+|++++|.|.+.|.|. +..+.|+++|..+... .. ......... ...
T Consensus 92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 169 (213)
T 2x1w_L 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK--KLVNRDLKTQSGSEMKKF 169 (213)
T ss_dssp CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSE--EEEEEEECCCSSCSCEEE
T ss_pred EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceE--EEeccccccccCccceee
Confidence 4457777754 34443 33 3447999999999999999764 2379999998875321 00 000000000 223
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.+.
T Consensus 170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~ 208 (213)
T 2x1w_L 170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208 (213)
T ss_dssp EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-
T ss_pred eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecc
Confidence 568999999999999999999999999999999998653
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=184.03 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=127.6
Q ss_pred cCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecCCc------eeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 549 ARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 549 ~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..|.+ ..+.+|+.++|.|.+.|.|.|.+.|+++... ......+.|.|.+++.+|+|.|+|.|.| ..+..+..
T Consensus 5 i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-~~~~~~~~ 83 (202)
T 1vca_A 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATC-ESRKLEKG 83 (202)
T ss_dssp EESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEE-TTEEEEEE
T ss_pred ECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEE-CCceEeeE
Confidence 33444 4455999999999999999999999995311 1233456799999999999999999999 56677889
Q ss_pred EEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 622 ATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 622 ~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.|.|..+|... ......+.+|+.++|.|.+.|.+++ ..|+|+|+|..+...... ... ...........|.|...
T Consensus 84 ~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~-~~~-~~~~~~~~~~~l~i~~~ 161 (202)
T 1vca_A 84 IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL-EDA-DRKSLETKSLEVTFTPV 161 (202)
T ss_dssp EEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC-SCC-SSCCCEEEEEEEEECCC
T ss_pred EEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc-ccc-CcCcceEEEEEEEEEee
Confidence 999998876532 1222568999999999999987542 279999999988642100 000 00000122456788988
Q ss_pred CCCCCEEEEEEEEcCCCC-------eEEEEEEEec
Q psy17146 699 RHDHFGVYNCSVSNPYGS-------DSVEIMLKPQ 726 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~-------~~~~~~l~V~ 726 (1011)
..+|.|.|+|.|.|.+|. .+.++.|.|.
T Consensus 162 ~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~ 196 (202)
T 1vca_A 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196 (202)
T ss_dssp GGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred eccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence 888999999999999986 3456677664
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=189.20 Aligned_cols=200 Identities=17% Similarity=0.209 Sum_probs=139.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+........ .+.....++......|.|.+++.+|+|
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR-SHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTT-CSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccc-cceEEecCCcEEEEEEEecCCCcccCe
Confidence 45799999999999999999999999986 6779999999987754322111 111222222111224667788999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.|+|.+.+..+ ...+..+.|.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.+.|+|++..+.....
T Consensus 86 ~Y~C~~~n~~g---~~~~~~~~l~V~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~--- 158 (212)
T 2v9r_A 86 VYVCVARNYLG---EAVSHDASLEVAILRDD-FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE--- 158 (212)
T ss_dssp EEEEEEEETTE---EEECCCEEEEECEECSS-CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTST---
T ss_pred EEEEEEECCCC---ceeecceEEEEEecccc-ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcc---
Confidence 99999998532 12244567777654432 223344667889999999999448999999999999887754321
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~ 239 (1011)
+.....+.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..+|.+.
T Consensus 159 ------~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 159 ------RITIRGGKLMITYTRKSDAGKYVCVGTNMVGER-ESEVAELTVLERPSFV 207 (212)
T ss_dssp ------TEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC-----
T ss_pred ------eEEccCCeEEEeeCCHhhCeeEEEEEecccCce-ecceEEEEEEeCchHh
Confidence 111222479999999999999999999998864 2334777888777654
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=182.17 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=131.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|.. .+.+|++|+|.|.+.++.+.+.|+|++..+..... .. .......+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~------~~---~~~~~~~~L~i~~v~~~D~G~Y 73 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQ------NP---LEPKNKARFSIPSMTEDYAGRY 73 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTSCSCSEEE------CC---CSSSSEEEEEESSCCGGGCEEE
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCCCCCEEEEEECCCCCccccc------cc---ccCCceEEEEeccCCcccCceE
Confidence 35788888888 89999999999999998889999999976632111 00 0112456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.|..+ ....+..+.|.|...+.+|.+...+...+.+|+.++|.|. +.+ +.+.+.|+|++..+..........
T Consensus 74 ~C~a~n~~g--~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~~~~~~ 149 (196)
T 3p2t_A 74 RCYYRSPVG--WSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ-SRS-PMDTFLLCKERAAHPLLCLRSEHG 149 (196)
T ss_dssp EEEEEETTE--EBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEE-EEE-EEEEEEEEETTCCCGGGSEEEEEE
T ss_pred EEEEeCCCc--ccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEe-cCC-CCCEEEEEeCCCcccceeeccccc
Confidence 999998642 1134667888898776677776554446789999999999 445 456899999988764432211100
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.....+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 150 -----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 150 -----AQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp -----EEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred -----ccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 112346899999999999999999999876
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=187.01 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=132.6
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCC--cEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSP--NLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~--~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.. ...+ .|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 3677877777 57899999999999987 6789999999876531 2345 899999999999999999999
Q ss_pred cC-CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 613 MG-FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 613 ~~-~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
.. ....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+.|.+ .+.|+|+|..+.. . ... ..
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~-~~~W~k~g~~~~~---~-~~~------~~ 154 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFD-RFSLAKEGELSLP---Q-HQS------GE 154 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCS-EEEEEETTCSSCC---S-EEE------CS
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCC-EEEEEECCCcccc---c-ccC------CC
Confidence 42 23455667888865 677765556678999999999977777777 9999999987653 1 111 12
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCC-----CeEEEEEEEecC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYG-----SDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~ 727 (1011)
....|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|.+
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 347999999999999999999998642 345667777754
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=193.56 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=123.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.|+++.|.+|++++|+|++..+.+. +.|.-.-... . . .....+...|.|.+++.+ |.|+|+
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~---~-~---------~~~g~~~~~~~l~~v~~~--~~y~C~ 66 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK---E-L---------LLPGNNRKVYELSNVQED--SQPMCY 66 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC---C-C---------CCSCSSEEEEEEESCCSC--CCCEEE
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc---c-c---------ccCCCceEEEEEEecccC--CeEEEE
Confidence 5678899999999999999999877665 8886421100 0 0 000112225788998854 579999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.... ...+..+.|+|+.+|..+.|...+ ..+.+|+.++|+|.+.++.|.. +|+|||+++++.....
T Consensus 67 ~~~~~----~~~~~~v~l~V~~~P~~v~I~~~~-~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------ 135 (291)
T 1mq8_A 67 SNCPD----GQSTAKTFLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------ 135 (291)
T ss_dssp EECSS----CEEEEECEEEECBCCSCCCBCCCC-SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------
T ss_pred EEcCC----ccEEEEEEEEEecCCCCCEEecCC-ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------
Confidence 97532 246778899999999988887653 3467899999999988888865 6999999988755321
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC------ceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR------TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~------~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
.... ...+|.+...+.+|.+.|+|+|.|..+. ...+....|.|.++|........+..+.+|+.++|.|.+
T Consensus 136 -~~~~--~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~ 212 (291)
T 1mq8_A 136 -VGEP--AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL 212 (291)
T ss_dssp -CBTT--EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------
T ss_pred -CCCC--ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEc
Confidence 1111 2357888888888888999999987552 123555677777776543332222244555555555555
Q ss_pred ccCCC
Q psy17146 261 EANPS 265 (1011)
Q Consensus 261 ~~~~~ 265 (1011)
.+.++
T Consensus 213 ~g~~P 217 (291)
T 1mq8_A 213 DGLFP 217 (291)
T ss_dssp -----
T ss_pred CCCCC
Confidence 55433
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=177.27 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=130.6
Q ss_pred CCccccc-CCcEEEEEEeecCCC-ccEEEEEECCeecCCCc---CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 311 GSNRLVE-GTDVRLYCKAEANPS-HMKYRWYINDQPVPAAA---SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 311 ~~~~v~~-g~~v~l~C~~~~~p~-~~~i~W~k~g~~l~~~~---~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
....+.+ |+.++|.|.+.+.+. ...+.|+|+|..+.... ....|.|.++..+ |+|.|+|.|.|. |..+..+.|
T Consensus 10 ~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~-~~~~~~~~l 87 (190)
T 2wv3_A 10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAE-DSGEYHCVYHFV-SAPKANATI 87 (190)
T ss_dssp CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGG-GCEEEEEEEEET-TEEEEEEEE
T ss_pred ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcc-cCEEEEEEEEeC-CcccccEEE
Confidence 4456667 999999999999885 34899999999987642 3578999999998 999999999999 888899999
Q ss_pred EEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC--CCcee---------ec---cCCcEEEEeec-cCCCe
Q psy17146 386 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDKV---------VG---NSPNLTLLMTS-DDLAG 450 (1011)
Q Consensus 386 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~--~~~~~---------~~---~~~~L~I~~v~-~~d~G 450 (1011)
.|..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|+++ +.... .. ....|.|.+++ .+|+|
T Consensus 88 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G 167 (190)
T 2wv3_A 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167 (190)
T ss_dssp EEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCE
T ss_pred EEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCE
Confidence 999999999888888999999999999999999999999994 32211 11 11269999999 79999
Q ss_pred EEEEEEEEcCCcceeeEEEEEE
Q psy17146 451 RYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
.|+|.|.|..+ .....+.|.|
T Consensus 168 ~Y~C~a~N~~g-~~~~~~~l~V 188 (190)
T 2wv3_A 168 EYECNATNSIG-SASVSTVLRV 188 (190)
T ss_dssp EEEEEEECSSC-EEEEEEEEEE
T ss_pred EEEEEEEecCC-cceeEEEEEE
Confidence 99999999643 3445555544
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=186.52 Aligned_cols=202 Identities=15% Similarity=0.219 Sum_probs=142.3
Q ss_pred ceeeccceeecC----CceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 23 AQYREQKFAMEP----QDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 23 ~~~~~p~~~~~p----~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
....+|.|...+ ..+.+.+|++++|.|.+.+ +.+.+.|+|++..+....... +..+. .+..+|.|.++
T Consensus 11 ~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~----~~~~~L~i~~~ 83 (231)
T 3ojm_B 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVR----NQHWSLIMESV 83 (231)
T ss_dssp --CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTT---CCEEE----GGGTEEEECSC
T ss_pred CCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccc---ceeee----cCcceEEEecC
Confidence 445678887766 7899999999999999987 667999999998775332221 11221 23458999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCC-Ceeec--CCeeeecCCCcEEEEEEccCCCCCcEEEEEe----
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PRIVQ--GDTLYTTEDREIELECISANGKPPAEITWID---- 170 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~-~~i~~--~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k---- 170 (1011)
+.+|+|.|+|.+.+.. +..+..+.|.|...+.. +.+.. +....+.+|+.+.|.|. +.+.|.+.+.|+|
T Consensus 84 ~~~d~G~Y~C~~~n~~----~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~ 158 (231)
T 3ojm_B 84 VPSDKGNYTCVVENEY----GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEK 158 (231)
T ss_dssp CGGGCEEEEEEEEETT----EEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECC-EECSSCCEEEEEEECCB
T ss_pred CcccCEEEEEEEeccc----CcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEE-EecCCCCEEEEEECCCC
Confidence 9999999999999853 34567788888876542 33322 34677889999999999 6789999999999
Q ss_pred CCceeeecee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCce
Q psy17146 171 GTGTVMSNVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238 (1011)
Q Consensus 171 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~ 238 (1011)
++..+..+.. ...............++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA--NQSAWLTVLPKQQA 225 (231)
T ss_dssp TTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCC--
T ss_pred CCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE--eeEEEEEEecCCCC
Confidence 6665543211 111111111111112479999999999999999999998876 66667777766643
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=180.70 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=130.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCC--eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~--~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.|...|..+.+.+|++++|.|.+.+... .+.|+|++..+.. +..+|.|.+++.+|+|.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~L~i~~v~~~d~G~ 65 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------------------TNSSLNIVNAKFEDSGE 65 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------------------CSSEEEECSCCGGGCEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------------------CceEEEEeccceecCEE
Confidence 578999999999999999999999987433 6999999976531 23479999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+.. .+..+.|.|.. ++.+...+...+.+|+.+.|.|.+..+.|.+.+.|+|++..+...
T Consensus 66 Y~C~~~~~~------~s~~~~l~V~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------ 130 (176)
T 1f2q_A 66 YKCQHQQVN------ESEPVYLEVFS---DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------ 130 (176)
T ss_dssp EEEECTTSS------CCCCEEEEEEC---SSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------
T ss_pred EEEEcCCcc------ccccEEEEEeC---cceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------
Confidence 999997642 24557778873 233333445677899999999995567888899999988766321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
.. .+.|.|.+++.+|+|.|+|.|.|..+. ..+..+.|.|..+|.
T Consensus 131 --~~------~~~L~i~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 131 --YE------NHNISITNATVEDSGTYYCTGKVWQLD-YESEPLNITVIKAPR 174 (176)
T ss_dssp --CC------SSEEEESSCCGGGCEEEEEEEEETTEE-EECCCEEEEEECSCC
T ss_pred --cC------CCeEEECCCCcccCEEEEEEEEeCCcc-eEecCEEEEEecCCC
Confidence 11 148999999999999999999997443 345667888877764
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=195.51 Aligned_cols=190 Identities=16% Similarity=0.255 Sum_probs=109.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..... .......+|+.+.. ..+.++|+|.++
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 100 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENM 100 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC----
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCC
Confidence 456777799999999999999999987 4568999986421110 00011124555432 235668999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCcee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTV 175 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l 175 (1011)
+.+|+|.|+|.+.+..... .+..+.|+|...+.+|.+.. .+...+.+|+.+.|.|.+.+..|++ +++|+|++..+
T Consensus 101 ~~~D~G~Y~C~~~~~~~~~---~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLPYT---FGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 177 (233)
T ss_dssp -CCCCSEEEEEECSSSSCC---BCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred CHHHCEEEEEEEecCCcee---ecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence 9999999999998754221 22335677776555555542 3333344699999999954445654 89999999877
Q ss_pred eec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 176 MSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..+ .............+...+.|.|.++..+|+|.|+|.|.|....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 654 2211111122234556688999999999999999999997554
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=181.44 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=139.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcc-------------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHR-------------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~-------------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
|.++|..+.+.+|++|+|.|...+ +...+.|++++....... .....+|+.+.. +.+|.|.
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-----~~~L~i~ 76 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQ 76 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-----TSCEEEC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-----CCeEEEc
Confidence 567777889999999999999765 456999999864321110 001124555542 2379999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ...+..+.|.|..++..+.+...... +.+|+.+.|.|. +.+.| +.+.|+|++..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~-~~~~p-p~i~W~~~g~~l 150 (208)
T 3r4d_A 77 MITMKDMGVYTLDMTDENY---RRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCL-SNDIG-ANIQWLFNSQSL 150 (208)
T ss_dssp SCCGGGCEEEEEEEECSSC---EEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEE-CSCTT-CEEEEEETTEEC
T ss_pred cccccCCeEEEEEEEcccC---ceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEE-CCCCC-CceEEEECCEeC
Confidence 9999999999999988632 34667788999988877777765544 889999999999 66766 799999999887
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
..+.++... .++ ++|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|.
T Consensus 151 ~~~~~~~~~--~~~------~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 151 QLTERMTLS--QNN------SILRIDPIKREDAGEYQCEISNPVSVR-RSNSIKLDIIFDPH 203 (208)
T ss_dssp CCCSSEEEE--TTT------TEEEESSCCGGGCEEEEEEEECTTCCE-ECCCEEECCC----
T ss_pred CCCCCeEEc--CCC------CEEEEeccCHHhCeEEEEEEecCCCcc-cCCceeeeEEeCCc
Confidence 655444322 222 379999999999999999999999976 46677777766654
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-19 Score=180.16 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=138.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC-CC---eeEEeeCCeecCCccc------------CCCCcceEEeecC-CCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-TG---VLQWTKDDFALGPHRN------------LSGFDRYAMIGSD-EEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-~~---~v~W~k~~~~l~~~~~------------~~~~~r~~i~~~~-~~~~~~L~I~ 95 (1011)
.|+.+++.+|++|+|.|.+.+. .+ .|.|+|++..+..... .....|+.+.... ..+.++|+|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 4678999999999999999873 33 4899998865432110 0112344443322 3456789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ........+.+..++ .+.+.......+.+|+.+.|.|. +.+.|+|.|+|+|++..+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~c~-~~g~p~p~i~W~~~~~~~ 159 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPA---GSFQARLRLRVLVPP-LPSLNPGPALEEGQGLTLAASCT-AEGSPAPSVTWDTEVKGT 159 (218)
T ss_dssp SCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCC-CCEEEECSCEETTCCSEEEEEEE-EEEBSCCEEEEEESSCCE
T ss_pred eccHHHCCceeEEEEeccC---ceeeeEEEEEEeeec-cceeeeeeeeeeeeccccceeee-ccCCcCceEEEEECCccc
Confidence 9999999999999987532 223344445555443 34444555677788999999999 779999999999999887
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
....... ..+.....+.|.|.++..+|+|.|+|.|.|..|.......+.|.|.
T Consensus 160 ~~~~~~~-----~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~ 212 (218)
T 4frw_A 160 TSSRSFK-----HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVS 212 (218)
T ss_dssp EEEEEEE-----CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred ccCceEe-----cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence 6644432 2223445678999999999999999999999998877777777664
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=189.01 Aligned_cols=178 Identities=20% Similarity=0.340 Sum_probs=130.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEec---CCCCeEEEEecCCce----eec-------------------------------
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDG---NPAPEITWIHEDSDK----VVG------------------------------- 588 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g---~p~p~v~W~k~~~~~----~~~------------------------------- 588 (1011)
+..++..+.+.+|++++|.|.+.+ .|.+.+.|+|++... ...
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 345566889999999999999998 888999999987432 000
Q ss_pred ---CCCcEEEeecCCCCCEEEEEEEEecCCC----ceeeEEEEEEcCC---Ceee--cCCceeeecCCcEEEEEEEEecC
Q psy17146 589 ---NSPNLTLLMTSDDLAGRYYCKASVMGFP----EVGAEATVYLKGR---PTII--SHRTQFGIPGDTARVECSAFSIP 656 (1011)
Q Consensus 589 ---~~~~L~I~~v~~~d~G~Y~C~a~n~~~~----~~s~~~~l~V~~~---P~i~--~~~~~~v~~G~~v~L~C~~~g~p 656 (1011)
...+|.|.+++.+|+|.|+|.|.|.... ..+..+.|.|..+ |.+. .+....+.+|+.++|.|.+.|.|
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p 164 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA 164 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCT
T ss_pred ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCC
Confidence 1358999999999999999999983221 1356888998774 3443 34456678899999999999999
Q ss_pred CCCeEEEEECCeEecccCCCCeEEe-----------cCCcCc----cceeEEEEcCCCCCCCEEEEEEEEcCCC---CeE
Q psy17146 657 PPEKVTWSYRGEEIGVGSSDDYSVL-----------EDPLKE----GIKSTLIIRESRHDHFGVYNCSVSNPYG---SDS 718 (1011)
Q Consensus 657 ~p~~v~W~~~g~~l~~~~~~~~~~~-----------~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~N~~G---~~~ 718 (1011)
.| .|+|+|++..+.......+... ...... .....|.|.++..+|+|.|+|.|.|.+| .+.
T Consensus 165 ~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~ 243 (250)
T 2fbo_J 165 NA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243 (250)
T ss_dssp TC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred CC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence 99 9999999988764322211111 000000 0126899999999999999999999554 666
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
.++.|.|
T Consensus 244 ~~~~l~V 250 (250)
T 2fbo_J 244 SSTILKV 250 (250)
T ss_dssp EEEEEEC
T ss_pred eeEEEeC
Confidence 6666653
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=185.90 Aligned_cols=177 Identities=18% Similarity=0.244 Sum_probs=130.3
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cce------------------e---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDK------------------V---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~------------------~---~~~~~~L~I~~v~~~ 601 (1011)
|.+...| .+.+.+|++++|.|.+.+.+.+.+.|+|.. ... . .....+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 4566677 899999999999999999999999999932 111 1 223457999999999
Q ss_pred CCEEEEEEEEecCC--CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEeccc
Q psy17146 602 LAGRYYCKASVMGF--PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~--~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~ 673 (1011)
|+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|. |++..|+|+|||..+..+
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG 160 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence 99999999999432 245667788887 6787763 344445589999999999996 443489999999998642
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.........+ ......+.|.|.++..+|.|.|+|.|+|..|....++.+
T Consensus 161 ~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 209 (213)
T 3mj8_L 161 VKTTQPSKSD-SKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP 209 (213)
T ss_dssp EEECCCEEET-TEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred cccCCcCccC-CcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence 1100001010 001124679999999999999999999999877766643
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=177.31 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=131.8
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... +. .......+|.|.+++.+|+|.|+
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~-----~~----~~~~~~~~L~I~~v~~~D~G~Y~ 73 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP-----KP----PERINKVKFYIPDMNSRMAGQYS 73 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC-----SS----CTTCCEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCCCCEEEEEECCCccccccc-----cc----CCCcceeEEEeCcCCcccCeEEE
Confidence 5788888887 89999999999999876678999999976531100 00 01224558999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeee
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.+.|.|. +.+ +.+.+.|+|++..+..... .
T Consensus 74 C~~~~~~~--~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~-----~ 144 (188)
T 1oll_A 74 CIYRVGEL--WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LDT-ATSMFLLLKEGRSSHVQRG-----Y 144 (188)
T ss_dssp EEEEETTE--ECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEE-CSS-SCSEEEEEEESSSCEEEEE-----E
T ss_pred EEecCCCC--CCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEE-cCC-CCCEEEEEECCcccccccc-----C
Confidence 99987421 1123566888888766566766544566889999999999 544 4569999999877654111 1
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC-CceeEEEEEEEE
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD-RTYKVARLKLLV 232 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g-~~~~s~~v~v~v 232 (1011)
.. ....|.|.+++.+|+|.|+|.|.|... ....+..+.|.|
T Consensus 145 ~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 145 GK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp CS-----SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred CC-----ceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 11 136899999999999999999998752 122345555555
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=183.54 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=120.4
Q ss_pred CceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceee-----------------------------cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVV-----------------------------GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~-----------------------------~~~~~L~I~~v 598 (1011)
++.+.+.+|++++|.|.+.+.+.+ .|.|+|++..... ..+.+|+|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 446889999999999999887665 7999998743210 11347999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCC
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~ 677 (1011)
+.+|+|.|+|.|.| +.+.....+.+.+..++.. ......+.+|+.+.|.|.+.|. |.| .|+|++++..+.......
T Consensus 91 ~~~D~G~Y~C~a~n-~~~~~~~~v~~~~~~~~~~-~~~~~~~~~g~~v~l~c~~~g~~P~p-~i~W~k~~~~~~~~~~~~ 167 (226)
T 4f80_A 91 TASDSGKYLCYFQD-GDFYEKALVELKVAALGSD-LHVDVKGYKDGGIHLECRSTGWYPQP-QIQWSNNKGENIPTVEAP 167 (226)
T ss_dssp CGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCCC-CEEEEEEEETTEEEEEEEEEEEBSCC-EEEEECTTSCBCCCEECC
T ss_pred chHHCeeEEEEEEC-CCcEEEEEEEEeeccceec-ccceeeeccCCceeeEEEeccCCCCC-EEEEEECCceEcCCCceE
Confidence 99999999999999 5555555555554333222 2334567889999999999985 888 999999764443212222
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+.... ++....+.+.++..+|.|.|+|.|+|.+|..++++.|.|.++
T Consensus 168 ~~~~~----~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 168 VVADG----VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp CEECT----TSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EEECC----CCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 22111 333445556667889999999999999999999999988654
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=182.13 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=129.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... .+.. .....+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~----~~~~-----~~~~~~L~i~~v~~~D~G~Y 73 (198)
T 1ugn_A 4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITR----IPQE-----LVKKGQFPIPSITWEHTGRY 73 (198)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHT----SCHH-----HHTTTEEEESSCCGGGCEEE
T ss_pred CCCeEeccCCC-cccCCCcEEEEEEecCCCcEEEEEECCcccccccc----cccc-----CCcccEEEECCCCHHHCeEE
Confidence 46888888874 89999999999999886668999999976531110 0000 01234799999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.|...+ ....+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +.+. .+.+.|+|++..+........ .
T Consensus 74 ~C~a~n~~~g-~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~-~~~~-~~~v~W~k~g~~~~~~~~~~~-~ 149 (198)
T 1ugn_A 74 RCYYGSDTAG-RSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCD-SQVA-FDGFILCKEGEDEHPQCLNSQ-P 149 (198)
T ss_dssp EEEEEETTTE-ECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEE-CSSC-CSEEEEEEC------CEEEC---
T ss_pred EEEEECCCCC-cccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEe-cCCC-CcEEEEEECCCccCCcccccc-c
Confidence 9999885311 0123566889998866667776555567889999999999 5566 679999999887644221100 0
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEE
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT---YKVARLKLLV 232 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v 232 (1011)
..++ .....|.|.+++.+|+|.|+|.|.|..+.. ..+..+.|.|
T Consensus 150 ~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 150 HARG---SSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp -------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred cCCC---cceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 0000 013689999999999999999999987632 2245555554
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=186.78 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=137.5
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|. ..+.+|++|+|.|.+..+...+.|+|++..+...... .+. .......+|.|.+++.+|+|.|
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~---~~~----~~~~~~~~L~I~~v~~~DsG~Y 77 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLI---GEH----HDGVSKANFSIGPMMQDLAGTY 77 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEE---CBC----CTTCEEEEEEECSCCTTTCEEE
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceee---eec----cCCCceEEEEeecCCcccCEEE
Confidence 4577888887 7899999999999998777799999998654211000 000 0122456899999999999999
Q ss_pred EEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+.... .....+..+.|.|.....+|.+...+...+.+|++++|.|. +.+.| +.|.|+|+++.+........
T Consensus 78 ~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~-~~~~~-~~~~w~k~g~~~~~~~~~~~- 154 (257)
T 1b6u_A 78 RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCS-SRSSY-DMYHLSREGEAHERRFSAGP- 154 (257)
T ss_dssp EEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEE-CSSCC-SEEEEEETTSSCEECCBCBC-
T ss_pred EEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEe-CCCCC-cEEEEEECCcccCccccccc-
Confidence 9999864321 12235677899999877777776555556889999999999 55554 69999999987754322110
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC---CceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcc
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD---RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g---~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
...+ .....|.|.+++ |+|.|+|.|.+... ....+..+.|.|...|......+.......|..+.|.|.+.
T Consensus 155 -~~~~---~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~ 228 (257)
T 1b6u_A 155 -KVNG---TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAE 228 (257)
T ss_dssp -CSSS---CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------------
T ss_pred -ccCC---ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEc
Confidence 1111 013589999998 99999999997643 22346678888888776542111122455688899998776
Q ss_pred cCCCccEEEEEeC
Q psy17146 262 ANPSHMKYRWYIN 274 (1011)
Q Consensus 262 ~~~~~~~i~W~~~ 274 (1011)
..- ..+.|..-
T Consensus 229 ~~~--~~~~~~~~ 239 (257)
T 1b6u_A 229 QKL--ISEEDLNL 239 (257)
T ss_dssp -------------
T ss_pred chH--HHHHHhhh
Confidence 544 46777653
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=174.87 Aligned_cols=156 Identities=15% Similarity=0.305 Sum_probs=130.3
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
..+.+|+.++|.|.+.+.|.+..+.|+|+|..+.. ....|.|.+++.+ |+|.|+|.+.|..+ +..+.|.|..++.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--~~~~L~i~~~~~~-d~G~Y~C~~~n~~~--s~~~~l~V~~~~~ 91 (175)
T 1fnl_A 17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFIDAATVN-DSGEYRCQTNLSTL--SDPVQLEVHIGWL 91 (175)
T ss_dssp SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--SCSEEEESSCCGG-GCEEEEEECSSSCC--CCCEEEEEECSSE
T ss_pred eeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--CceEEEEeCCCcc-cCEEEEEEeeCCcc--cccEEEEEeCCCc
Confidence 47999999999999999987756899999998864 5679999999998 99999999998544 5677888886665
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
+... ....+.+|+.+.|.|.+.+.|++ .+.|+|++.... ......|.|.+++.+|+|.|+|.|.|..+...+..+.|
T Consensus 92 ~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 170 (175)
T 1fnl_A 92 LLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170 (175)
T ss_dssp EEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred eeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEE
Confidence 5444 34678899999999999887665 999999987654 33578899999999999999999999766677778888
Q ss_pred EEcC
Q psy17146 471 YLKG 474 (1011)
Q Consensus 471 ~v~~ 474 (1011)
.|.+
T Consensus 171 ~V~~ 174 (175)
T 1fnl_A 171 TITQ 174 (175)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7754
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=180.02 Aligned_cols=184 Identities=19% Similarity=0.281 Sum_probs=118.9
Q ss_pred CCceeEEecCcEEEEEEEcCC-CC---eeEEeeCCeecC-----------CcccCCCCcceEEeecC-CCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK-TG---VLQWTKDDFALG-----------PHRNLSGFDRYAMIGSD-EEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~-~~---~v~W~k~~~~l~-----------~~~~~~~~~r~~i~~~~-~~~~~~L~I~~v 97 (1011)
++.+.+.+|++|+|.|.+.+. .+ .|.|+|++.... .........|....... ..+.++|+|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 356899999999999999763 22 699999874321 11112223455554433 456789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
+.+|+|.|+|.+.|.. +..+..+.+.+...+..+ .....+.+|+.+.|.|.+.++.|.|+|+|+|+++.+..
T Consensus 91 ~~~D~G~Y~C~a~n~~----~~~~~~v~~~~~~~~~~~----~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~ 162 (226)
T 4f80_A 91 TASDSGKYLCYFQDGD----FYEKALVELKVAALGSDL----HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162 (226)
T ss_dssp CGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCCCC----EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred chHHCeeEEEEEECCC----cEEEEEEEEeeccceecc----cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence 9999999999999853 233333444443332222 22456678999999999655579999999998877665
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
..........++ .+. .+.+..++.+|+|.|+|.|.|..|....+..+.
T Consensus 163 ~~~~~~~~~~~g-~~~---v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~ 210 (226)
T 4f80_A 163 TVEAPVVADGVG-LYA---VAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210 (226)
T ss_dssp CEECCCEECTTS-CEE---EEEEEEECC----CEEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEECCCC-cEE---EEEEEEechhcCcEEEEEEEeCCCCeEEEEEEE
Confidence 443332333333 222 233445678999999999999999875544443
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=180.46 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=129.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEec-C
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVM-G 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~ 614 (1011)
+|.|...|.. .+.+|++++|.|.+.+. .+.+.|+|++.... ...++.|.|.+++.+|+|.|+|.|.|. +
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 81 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence 5777777776 79999999999999764 47899999986543 234578999999999999999999983 2
Q ss_pred CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 615 FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+ +.+ .+.|+|+|..+.. .... .....
T Consensus 82 ~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~----~~~~------~~~~~ 149 (188)
T 1oll_A 82 WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATS-MFLLLKEGRSSHV----QRGY------GKVQA 149 (188)
T ss_dssp ECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS-SCS-EEEEEEESSSCEE----EEEE------CSSEE
T ss_pred CCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC-CCC-EEEEEECCccccc----cccC------CCcee
Confidence 23456777888864 67777545567899999999999876 446 8999999987653 1111 22357
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCC---CeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYG---SDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G---~~~~~~~l~V 725 (1011)
.|.|.+++.+|+|.|+|.|.|... ..+..+.|.|
T Consensus 150 ~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 150 EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp EEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred EEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 999999999999999999998752 3455566655
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=189.76 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=126.4
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC--Cc---------ccCCCCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG--PH---------RNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~--~~---------~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++.. +. .. ......+|+.+..+...+.++
T Consensus 27 ~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 106 (282)
T 1qok_A 27 QVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAY 106 (282)
T ss_dssp CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEE
T ss_pred eEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEE
Confidence 345667889999999999999999864 468999997521 10 00 001123688887655556789
Q ss_pred EEEeecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCC------------CCeee-cCCeeeecCCCcEEEEEEc
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPD------------PPRIV-QGDTLYTTEDREIELECIS 157 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~------------~~~i~-~~~~~~v~eg~~v~L~C~~ 157 (1011)
|+|.+++.+|+|.|+|.+.+..+. ........+.|+|...+. ++.+. .+..+.+.+|+.++|.|.
T Consensus 107 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~- 185 (282)
T 1qok_A 107 LQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS- 185 (282)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE-
T ss_pred EEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE-
Confidence 999999999999999999986421 111233456788887652 33333 345777899999999999
Q ss_pred cCCCCCcEEEEEe--CCceeeec--eeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 158 ANGKPPAEITWID--GTGTVMSN--VRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 158 ~~g~P~~~i~W~k--~~~~l~~~--~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.+.| +.+.|+| ++..+..- ...........+... ...+|+|.+++.+|+|.|+|.|.+..
T Consensus 186 ~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 186 ASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp ESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred ecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 67778 8999999 55443110 000000000111111 13579999999999999999999753
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=181.74 Aligned_cols=188 Identities=21% Similarity=0.286 Sum_probs=132.3
Q ss_pred eecCCceeEEecCcEEEEEEEcCC--------CCeeEEeeCCeecC----Cc-------ccCCCCcceEEeecCCCceeE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDK--------TGVLQWTKDDFALG----PH-------RNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~--------~~~v~W~k~~~~l~----~~-------~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
...|.++.+.+|++|+|.|.+..+ .+.+.|+|++.... .. ......+|+.+..+...+.++
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 345788999999999999999865 45899999875311 00 011233688877654456778
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCC---CCCcEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG---KPPAEITW 168 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g---~P~~~i~W 168 (1011)
|+|.+++.+|+|.|+|.+.+.........+..+.|.|...+..|.+..+.. +.+|+.+.|.|.+... .|.+.++|
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~~~G~~v~L~C~~~~~~~~~p~p~v~W 161 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP--LESGRPTRLSCSLPGSCEAGPPLTFSW 161 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CC--CCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCcc--ccCCCeEEEEEEeccCCCCCCCceEEE
Confidence 999999999999999999885311111123568899998887777765333 6789999999994332 48899999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
+|++..+.... . ...+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|
T Consensus 162 ~~~~~~~~~~~-----~-------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLDPE-----T-------TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSCSS-----C-------CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCCCC-----c-------eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 99886542210 0 1125899999999999999999999876555566666543
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=183.12 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=134.8
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCcee--EEEEeecccCCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY--SLEIYPVMLDDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~--~L~I~~v~~~D~ 102 (1011)
...|.|...|. ..+.+|++|+|.|.+.++.+.+.|+|++..+.... + ... ...... +|.|.+++.+|+
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~------~-~~~--~~~~~~~~~L~I~~v~~~D~ 76 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI------G-RRL--KFWNETDPEFVIDHMDANKA 76 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC------S-EEC--C----CCCEEEECSCCGGGC
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccc------c-ccC--CCCcceeeEEEEcccccccC
Confidence 34688988888 58999999999999988778999999986542110 0 000 011223 799999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.++|.|. ..+.|.+.+.|+|++..+.....
T Consensus 77 G~Y~C~a~n~~~--~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~-~~~~~~~~~~W~k~g~~~~~~~~-- 151 (218)
T 1uct_A 77 GRYQCQYRIGHY--RFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS-SAHIPFDRFSLAKEGELSLPQHQ-- 151 (218)
T ss_dssp EEEEEEEEETTT--EEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEE-CSSSCCSEEEEEETTCSSCCSEE--
T ss_pred EEEEEEEEcCCC--ceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEe-CCCCCCCEEEEEECCCccccccc--
Confidence 999999998532 1234567888888766667776554567889999999997 45678889999999887644211
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC---ceeEEEEEEEEEeC
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR---TYKVARLKLLVKYA 235 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~---~~~s~~v~v~v~~~ 235 (1011)
.... ...|.|.+++.+|+|.|+|.|.|.... ...+..+.|.|...
T Consensus 152 --~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 152 --SGEH------PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp --ECSS------SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred --CCCc------cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 1111 258999999999999999999986421 23455666666543
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=178.27 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=125.9
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
..+|.|...|.. .+.+|++|+|.|.+.++.+.+.|+|++... . ....+|.|.+++.+|+|.
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~-------------~-----~~~~~L~i~~v~~~D~G~ 66 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPPGVDLYRLEKLSSSR-------------Y-----QDQAVLFIPAMKRSLAGR 66 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECSTTCSEEEEEETTTCC-------------E-----ESSSEEEESSCCGGGCEE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCCCCCEEEEEECCccc-------------c-----CcccEEEECcCChhhCce
Confidence 346888888885 899999999999998877899999998540 0 123379999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.|..+ ....+..+.|.|.....+|.+...+...+.+|+.+.|.|. +.+.| +.+.|+|++..+....
T Consensus 67 Y~C~a~n~~g--~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~-~~~~~-~~~~w~k~g~~~~~~~----- 137 (184)
T 2gi7_A 67 YRCSYQNGSL--WSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TRYGF-DQFALYKEGDPAPYKN----- 137 (184)
T ss_dssp EEEEEEETTE--EBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEE-CSSCC-CEEEEEECCCCTTSCC-----
T ss_pred EEEEEEcCCC--ccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEE-cCCCC-cEEEEEECCCcCccee-----
Confidence 9999988532 1124566888888766666666544567789999999999 55555 5999999987764311
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.......|.|.+++.+|+|.|+|.|.|..+
T Consensus 138 -----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 138 -----PERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp -----CCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred -----cCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 1223346899999999999999999999764
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=181.11 Aligned_cols=188 Identities=18% Similarity=0.267 Sum_probs=131.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+.. ..+.++|+|.+++.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE 81 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChh
Confidence 556688999999999999999987 45789999864221110 0111225777765 335679999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~ 178 (1011)
|+|.|+|.+.+.... ..+..+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.++.|.+ .++|+|++..+..+
T Consensus 82 D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~ 158 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPY---TFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG 158 (213)
T ss_dssp GCEEEEEEECSSSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEeeecCCcc---eeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcce
Confidence 999999999875421 233346788876554555543 3333344789999999954447775 89999999887655
Q ss_pred -eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 -VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.............+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 159 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred eeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 22111112222345566899999999999999999999987654
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=181.82 Aligned_cols=199 Identities=16% Similarity=0.216 Sum_probs=137.6
Q ss_pred ccceeec----CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 27 EQKFAME----PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 27 ~p~~~~~----p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
+|.|... +..+.+.+|++++|.|.+.+ +.+.+.|+|++..+....... +.... .+..+|.|.+++.+|
T Consensus 11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~----~~~~~L~i~~v~~~d 83 (241)
T 3grw_A 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG---GIKLR----HQQWSLVMESVVPSD 83 (241)
T ss_dssp CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT---CCEEE----GGGTEEEECSCCGGG
T ss_pred CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc---ceeee----ccceEEEEEeCCccc
Confidence 5666644 45789999999999999997 567999999998875432221 11221 234489999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-CCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEe----CCce
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIV--QGDTLYTTEDREIELECISANGKPPAEITWID----GTGT 174 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k----~~~~ 174 (1011)
+|.|+|.+.+.. +..+..+.|.|...+. .+.+. ......+.+|+.+.|.|. +.+.|.+.+.|++ ++..
T Consensus 84 ~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~-~~~~p~p~v~W~~~~~~~g~~ 158 (241)
T 3grw_A 84 RGNYTCVVENKF----GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-VYSDAQPHIQWLKHVEVNGSK 158 (241)
T ss_dssp CEEEEEEEEETT----EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEE-EECSSCCEEEEEEECCSSSCS
T ss_pred CEEEEEEEeecC----CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEE-EecCCCCEEEEEEcccCCCcc
Confidence 999999999853 3456668888876433 23333 245667889999999999 6789999999999 6666
Q ss_pred eeecee-E-EEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceE
Q psy17146 175 VMSNVR-V-TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239 (1011)
Q Consensus 175 l~~~~~-~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~ 239 (1011)
+..+.. + ..............+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA--EKAFWLSVHGPRAAE 223 (241)
T ss_dssp SCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEC-------
T ss_pred cCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE--EEEEEEEecCCCCCC
Confidence 644221 1 11111111122345789999999999999999999999876 566677777666543
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=180.98 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=130.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCcee------------------------------ecCCCcEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKV------------------------------VGNSPNLTL 595 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~------------------------------~~~~~~L~I 595 (1011)
..|..+.+.+|++++|.|.+.+.|.+ .|.|+|++.... ...+++|+|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 34667889999999999999998876 489999874321 012357999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCe--eecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT--IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~--i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.+.|...........+.+..++. +.......+..|+.+.|.|.+.|.|.| .|+|++++..+...
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~~~~~~ 162 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVKGTTSS 162 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSCCEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCcccccC
Confidence 999999999999999984444455555555554443 334456667889999999999999999 99999999887632
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.... .....+.|.|.++..+|.|.|+|.|+|..|..+..+++.|.
T Consensus 163 --~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 163 --RSFKHSR---SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp --EEEECSS---SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred --ceEecCC---cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 1111110 11235689999999999999999999999988877777653
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=189.25 Aligned_cols=191 Identities=21% Similarity=0.327 Sum_probs=125.0
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC--CC-eeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TG-VLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~-~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.+.. |..+.+.+|++|+|.|.+.+. .+ .+.|+|++..... .......+|+.+.. ..+.++|+|.+
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 97 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISG 97 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEES
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECC
Confidence 45555 889999999999999999863 23 6999997421100 00111235776654 24567999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~ 173 (1011)
++.+|+|.|+|.+.+.... ....+..+.|+|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|+ +.++|+|++.
T Consensus 98 v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 176 (234)
T 2j6e_L 98 LRSEDEADYYCATWDDSLS-AVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGA 176 (234)
T ss_dssp CCSTTCSEEEEEEEETTTT-EEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTE
T ss_pred CCHHHCEEEEEEEEcCCcc-eeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCE
Confidence 9999999999999986431 0122334566774332 2333321 222233468899999994444555 4999999998
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+..+.............+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 225 (234)
T 2j6e_L 177 PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 225 (234)
T ss_dssp ECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred ECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence 8755432211111112233344689999999999999999999987654
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=178.66 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=129.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+.. |.++.+.+|++|+|.|.+.+ +.+.+.|+|++. .+. . .......+|+.+.. ..+.++|+|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEAD 80 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHH
Confidence 455 89999999999999999987 467899999532 110 0 00011235777654 345679999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~ 178 (1011)
|+|.|+|.+.+.... .....+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.+..|++ .++|+|++..+..+
T Consensus 81 D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~ 157 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPL---TFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDG 157 (210)
T ss_dssp GCEEEEEEECSSSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTT
T ss_pred HCeEEEEEEEcCCCc---eeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCC
Confidence 999999999875321 223345788876555555542 2333345799999999954446664 99999999887654
Q ss_pred -eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 -VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.............+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 158 VLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred ceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 22111112223345566899999999999999999999987654
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=180.39 Aligned_cols=190 Identities=18% Similarity=0.265 Sum_probs=133.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+...| .+.+.+|++|+|.|.+.+ +.+.+.|+|.. .... ........+|+.+.. ..+.++|.|.+++
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 78 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQ 78 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCC
Confidence 4566677 999999999999999995 67799999932 1110 001111335777655 3467799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCcee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTGTV 175 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l 175 (1011)
.+|+|.|+|.+.+.... ....+..+.|.|...+ .+|.+.. .....+.+|+.+.|.|.+.+..|+ +.++|+|++..+
T Consensus 79 ~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 157 (213)
T 3mj8_L 79 AGDEADYYCQSWDGTNS-AWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI 157 (213)
T ss_dssp GGGCEEEEEEEEETTTT-EEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred hhhCEEEEEEeccCCcc-eeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence 99999999999986431 1245666888898544 3455432 223344589999999995544455 499999999888
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+........ ....+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3mj8_L 158 TQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTV 203 (213)
T ss_dssp CTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEE
T ss_pred CCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccE
Confidence 65433222222 33345556789999999999999999999987543
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-19 Score=180.17 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=132.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCC----------------eecCCcccCCCCcceEEeec-CCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDD----------------FALGPHRNLSGFDRYAMIGS-DEE 87 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~----------------~~l~~~~~~~~~~r~~i~~~-~~~ 87 (1011)
+...+..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+... .....+|+.+..+ ...
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 81 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY-YPDLKGRVHFTSNDVKS 81 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCC-CGGGTTTEEESCSCGGG
T ss_pred eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEcccc-CCccccceEEeccCccC
Confidence 4455678899999999999999873 3589999843 222110 1112357776542 234
Q ss_pred ceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
+.++|+|.+++.+|+|.|+|.+.+.. +..+..+.|.|..+|..+.+.. ...+.+|+.+.|.|.+..+.|.+.+.
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~ 155 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAP----GVANKKFLLTVLVKPSGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFE 155 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETT----EEEEEEEEEEEECCCBSCEEEE--ESCCBTTCCEEEEEECSBCCSSCEEE
T ss_pred CcccEEEccCChhhCeEEEEEEEeCC----CccccEEEEEEEcCCCCceeee--ecceecCCcEEEEecCCCCCCCCEEE
Confidence 56789999999999999999999853 3457788999998877665543 22367899999999944899999999
Q ss_pred EEeCCce--eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe
Q psy17146 168 WIDGTGT--VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234 (1011)
Q Consensus 168 W~k~~~~--l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~ 234 (1011)
|+|++.. +...... .... +.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 156 W~~~~~~~~~~~~~~~----~~~~------~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~ 212 (214)
T 3jz7_A 156 WQKLSDSQTMPTPWLA----EMTS------PVISVKNASSEYSGTYSCTVQNRVGSD--QCMLRLDVVP 212 (214)
T ss_dssp EEECSTTCCCCGGGGG----GTTS------SEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEECCBC
T ss_pred EEECCCCCccCcccee----ccCC------CEEEEecCCHHHCEEEEEEEEcCCCcE--EEEEEEEEeC
Confidence 9996432 2221111 1111 389999999999999999999999876 5555665553
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-20 Score=187.14 Aligned_cols=196 Identities=20% Similarity=0.288 Sum_probs=143.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc------ccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH------RNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+..|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .......|+.+.. .+|.|.+++.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~~~ 77 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP------TGITFKSVTR 77 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET------TEEECSCCCT
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec------cEEEEeeCCH
Confidence 356778899999999999999999998 67799999998653110 0112234665542 4799999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
+|+|.|+|.+.+..+ ....+..+.|.|..+|..+.+.. ...+.+|+.+.|.|.+..++|.+.+.|+|++..+....
T Consensus 78 ~d~G~Y~C~~~~~~g--~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 153 (209)
T 1nbq_A 78 EDTGTYTCMVSEEGG--NSYGEVKVKLIVLVPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153 (209)
T ss_dssp TSCSEEEEEEEETTS--SCEECCEEECCEEBCCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred HHCcEEEEEEecCCC--CccceEEEEEEEecCCcCCCccc--ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence 999999999998643 23456778899998887665543 34578899999999955899999999999998775532
Q ss_pred eEEEeeecCCc--eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 180 RVTEEASVDGR--RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 180 ~~~~~~~~~~~--~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
....... +.+ .....+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|.
T Consensus 154 ~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 154 KSTRAFS-NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp SSSSSCT-TCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred ccceeee-ccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 2100000 000 0001258999999999999999999999998755666666654
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=184.11 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=134.0
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+..... ...++. ..+......|+|.+++.+|+
T Consensus 6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~--~~~~~~~~~l~i~~v~~~d~ 81 (217)
T 2vr9_A 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK--KSHRVQ--FKDGALFFYRTMQGKKEQDG 81 (217)
T ss_dssp CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSS--SSSEEE--CTTSCEEESSCCBSSSCBCC
T ss_pred ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCc--cceeEE--ecCCceEEEEEeccCCcccC
Confidence 456899999999999999999999999987 6679999999987754311 112222 22222233457999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+..+ ...+..+.|.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.++|+|++..+.......
T Consensus 82 G~Y~C~~~n~~g---~~~~~~~~l~v~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~ 157 (217)
T 2vr9_A 82 GEYWCVAKNRVG---QAVSRHASLQIAVLRDD-FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS 157 (217)
T ss_dssp EEEEEEEEETTE---EEECCCEEEEECEECCS-CSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC-
T ss_pred ceEEEEEecCCC---ccccccceEEEEEeCCC-cEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccc
Confidence 999999998532 12234566666653322 22234466788999999999944899999999999988876422211
Q ss_pred EeeecCCc-eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 183 EEASVDGR-RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 183 ~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
.. ...+ .....++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 158 ~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 197 (217)
T 2vr9_A 158 FG--ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197 (217)
T ss_dssp ----CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred cc--cCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence 00 0111 111124799999999999999999999998763
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=179.73 Aligned_cols=175 Identities=19% Similarity=0.344 Sum_probs=125.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------eee---cCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KVV---GNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~~---~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. ... ....+|+|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 44557788999999999999999999999999986421 111 1224899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.| .|.+..++|+|+|..+........
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 163 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW 163 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence 9999999984222233445677765 677663 33333457999999999998 555558999999999864200001
Q ss_pred EEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 679 SVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 679 ~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
....+ .++ ..+.|.|.++..+|.|.|+|.|.|..........+
T Consensus 164 ~~~~~--~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 164 TDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp CCCCT--TTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred CCccC--CCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 11100 111 24699999999999999999999998876544444
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=178.08 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=125.2
Q ss_pred cCCceeEEec--CcEEEEEEEcCCCCeeEEeeC---CeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 33 EPQDQTAVVG--SRVTLPCRVIDKTGVLQWTKD---DFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 33 ~p~~~~v~~G--~~v~L~C~v~~~~~~v~W~k~---~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
+|..+.+.+| ++|+|.|.+.++.+.+.|+++ +..+.. ..++.... ...|.|.+++.+|+|.|+|
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~------~~~~~~~~-----~~~l~I~~v~~~D~G~Y~C 81 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD------GNRISWDS-----KKGFTIPSYMISYAGMVFC 81 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCC------SSSCEEET-----TTEEEEEGGGTTTCSEEEE
T ss_pred CceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccC------CCcccccC-----CccEEEccCChhcCceEEE
Confidence 4688999999 999999999988889999885 444321 12333321 1269999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcCCCCCee--ecCCeeeecCCCcEEEEEEccCCCC--CcEEEEEeCCceeeecee-EE
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVPPDPPRI--VQGDTLYTTEDREIELECISANGKP--PAEITWIDGTGTVMSNVR-VT 182 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P--~~~i~W~k~~~~l~~~~~-~~ 182 (1011)
.+.+... ...+..+.|.|... .++.+ .....+.+.+|+.+.|.|. +.|.| .+.+.|++++..+..... ..
T Consensus 82 ~a~n~~~---~~~s~~~~l~v~~~-~~p~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~i~W~~~g~~~~~~~~~~~ 156 (213)
T 2x1w_L 82 EAKINDE---SYQSIMYIVVVVGY-RIYDVVLSPSHGIELSVGEKLVLNCT-ARTELNVGIDFNWEYPSSKHQHKKLVNR 156 (213)
T ss_dssp EEC-------CEECCCEEEEECBC-CEEEEEEESCSCEEEETTCCEEEEEE-EEECTTBCCEEEEECSCSSCCSEEEEEE
T ss_pred EEEECCe---eEEEEEEEEEEeCC-cccceEEcCCCCeEEcCCCCEEEEEE-EECCCCCceEEEEEecCCccceEEEecc
Confidence 9987421 23444467777542 22322 2334558899999999999 55544 468999999887533211 10
Q ss_pred EeeecC-CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCce
Q psy17146 183 EEASVD-GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238 (1011)
Q Consensus 183 ~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~ 238 (1011)
...... +......++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|.+
T Consensus 157 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEDPIE 211 (213)
T ss_dssp EECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEEC----
T ss_pred ccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE--EEEEEEEEeccccc
Confidence 001001 0113345689999999999999999999998876 66777777766643
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=174.31 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=125.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|. ..+.+|++|+|.|.+..+.+.+.|+|++..+.... +.... ........|.|.+++.+|+|.|
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~------~~~~~-~~~~~~~~l~I~~v~~~D~G~Y 78 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLR------LIGEH-HDGVSKANFSISRMTQDLAGTY 78 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEE------EECEE-ETTEEEEEEEESSCCGGGCEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEeccCCCCEEEEEECCCcCCcce------eeeec-CCCCceEEEEeccCCcccCeEE
Confidence 4577888887 78999999999999988778999999986542110 00000 0112345899999999999999
Q ss_pred EEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+...+ .....+..+.|.|...+.+|.+...+...+.+|+.++|.|. +.+ |.+.+.|+|++..+........
T Consensus 79 ~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~~~~- 155 (201)
T 1nkr_A 79 RCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCS-SRS-SYDMYHLSREGEAHERRLPAGP- 155 (201)
T ss_dssp EEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEE-ESS-CCSEEEEEETTCSSCEEEECEE-
T ss_pred EEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEe-CCC-CCceEEEEECCcccCccccccc-
Confidence 9999764221 11234667889998876667776444456889999999999 444 5679999999887654322111
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
...+ .....|.|.+++ |+|.|+|.|.+.
T Consensus 156 -~~~~---~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 156 -KVNG---TFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp -EETT---EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred -ccCC---ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 1111 124689999998 999999999875
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-19 Score=175.42 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=123.9
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------------------------CCCcEEEeecCCCCCEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------------------NSPNLTLLMTSDDLAGRY 606 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------------------~~~~L~I~~v~~~d~G~Y 606 (1011)
.+.+.+|++++|.|.+.+.|.+.+.|+|++...... ...+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 567899999999999999999999999998642221 134599999999999999
Q ss_pred EEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 607 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 607 ~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
+|.|.|. . ..+.|.|.. +..+....+.+|+.++|.|.+.+.|.| .+.|+++|..+..
T Consensus 84 ~C~~~~~-~----~~~~l~V~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~-------------- 140 (184)
T 2ny1_B 84 ICEVEDQ-K----EEVQLLVFG---LTANSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNIQ-------------- 140 (184)
T ss_dssp EEEETTE-E----EEEEEEEEE---EEESSCSEEETTCCEEEEEECCTTCCC-EEEEECTTSCEEE--------------
T ss_pred EEEEEcC-C----CcEEEEEEE---ecCCCCceeecCCCEEEEEEcCCCCCC-EEEEEeCCCcccc--------------
Confidence 9999873 2 255666663 333455678999999999999999989 9999999866521
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 141 --~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 141 --GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179 (184)
T ss_dssp --ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred --CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence 136899999999999999999999999999999998854
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=187.99 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=130.7
Q ss_pred eeecCCceeEEecCcEEEEEEEc----CCCCeeEEeeCCeecC----Cc--------------------ccCCCCcceEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI----DKTGVLQWTKDDFALG----PH--------------------RNLSGFDRYAM 81 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~----~~~~~v~W~k~~~~l~----~~--------------------~~~~~~~r~~i 81 (1011)
+...+.++.+.+|++|+|.|.+. .+.+.+.|+|++.... .. ......+|..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 45566789999999999999998 4566899999975420 00 00112245554
Q ss_pred eecCCCceeEEEEeecccCCCceEEEEEEeCCCCC-cceeeeEEEEEEEcCCCCCe--eecCCeeeecCCCcEEEEEEcc
Q psy17146 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGE-PAIRSRFATLTVLVPPDPPR--IVQGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 82 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~s~~~~l~V~~~p~~~~--i~~~~~~~v~eg~~v~L~C~~~ 158 (1011)
.. .+.++|+|.+++.+|+|.|+|.+.+..... ....+..+.|.|..++.++. +.....+.+.+|+.+.|.|. +
T Consensus 85 ~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~-~ 160 (250)
T 2fbo_J 85 AN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP-C 160 (250)
T ss_dssp SC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCC-E
T ss_pred cc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEE-e
Confidence 43 245689999999999999999999864321 22345678888887644443 33445678889999999999 6
Q ss_pred CCCCCcEEEEEeCCceeeeceeE--EEe------------eecCCceEE-EEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 159 NGKPPAEITWIDGTGTVMSNVRV--TEE------------ASVDGRRTT-VKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 159 ~g~P~~~i~W~k~~~~l~~~~~~--~~~------------~~~~~~~~~-~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+.|.|.++|+|++..+...... ... .....+... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 161 ~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 161 TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence 78899999999988766432110 000 000111111 11589999999999999999999977754
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=173.25 Aligned_cols=193 Identities=23% Similarity=0.329 Sum_probs=129.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-C-----CCeeEEeeCCeecCCc---------ccCCCCcceEEeecC-CCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-K-----TGVLQWTKDDFALGPH---------RNLSGFDRYAMIGSD-EEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~-----~~~v~W~k~~~~l~~~---------~~~~~~~r~~i~~~~-~~~~~~L~ 93 (1011)
+...++.+.+.+|++|+|.|.+.+ + ...+.|+|++..+... ......+|..+..+. ..+.++|.
T Consensus 4 v~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 83 (222)
T 3sbw_C 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83 (222)
T ss_dssp CBCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred EecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence 344567789999999999999864 2 2379999986333111 111123566665432 34677999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|.+.+. +..+..+.|.|..++..+.+.. ...+.+|+.+.|.|. +.|+|.+.++|+++++
T Consensus 84 I~~v~~~D~G~Y~C~~~~~-----~~~~~~~~l~V~~~~~~~~~~~--~~~~~~g~~v~L~C~-~~g~P~p~i~W~~~~g 155 (222)
T 3sbw_C 84 ITDVKLQDAGVYRCMISYG-----GADYKRITVKVNAPYNKINQRI--LVVDPVTSEHELTCQ-AEGYPKAEVIWTSSDH 155 (222)
T ss_dssp ESSCCGGGCEEEEEEEESS-----SEEEEEEEEEEEBCCCCCEEEE--EEEETTTTEEEEEEE-EEEBSCCEEEEEETTC
T ss_pred EcCcccccCeEEEEEEEeC-----CCceeEEEEEEECCCCCCCcee--eeeecCCCcEEEEEE-ecCCCCCeEEEEECCC
Confidence 9999999999999999872 2345678899998776654432 125678999999999 5679999999999955
Q ss_pred eeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCC
Q psy17146 174 TVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236 (1011)
Q Consensus 174 ~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P 236 (1011)
.+... .........++ .+...+.|.+ ..+|.|.|+|.|.|..|... ..+.|.|...|
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~--~~~~l~v~~~p 213 (222)
T 3sbw_C 156 QVLSGKTTTTNSKREEK-LFNVTSTLRI---NTTTNEIFYCTFRRLDPEEN--HTAELVIPELP 213 (222)
T ss_dssp CEECCEEEEEECC-----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEE--EEEEEECCCC-
T ss_pred ceecCccceEEEcCCCC-CEEEEEEEEE---eccCCcEEEEEEEeCcccee--eEEEEEecCCc
Confidence 55443 22212222222 3333344544 56899999999999999774 44455555444
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=175.64 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=114.9
Q ss_pred eEEEcCCCcEEEEEEEec--CCCCeEEEEecCCce----------------eecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 553 SVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSDK----------------VVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g--~p~p~v~W~k~~~~~----------------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+.+.+|++++|.|.... .+.+.|.|+|++..+ ....+++|.|.+++.+|+|.|+|.|.| .
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n-~ 83 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS-T 83 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE-T
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEe-C
Confidence 466889999999995433 566799999998422 223457799999999999999999999 4
Q ss_pred CCce--eeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 615 FPEV--GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 615 ~~~~--s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
.+.. +..+.|.|..++.- + .....+..++|.|.+.|.|.| .|+|+|+|+.+.... .
T Consensus 84 ~g~~~~~~~~~l~V~~~~~~---p-~i~~~~~~v~L~C~~~g~p~p-~i~W~~~g~~l~~~~-----------------~ 141 (176)
T 1hng_A 84 NGTRILNKALDLRILEMVSK---P-MIYWECSNATLTCEVLEGTDV-ELKLYQGKEHLRSLR-----------------Q 141 (176)
T ss_dssp TCCEEEEEEEEEEEECCCCC---C-EEEEETTTTEEEEECSSCSSC-EEEEEETTEEEEEES-----------------S
T ss_pred CCCEEEEEEEEEEEeCCCCC---C-EEEecCCcEEEEEEecCCCCc-EEEEEECCEECCCCC-----------------c
Confidence 4554 77788888764320 1 112234569999999999999 999999999986321 2
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.++..+|+|.|+|.|.|.+|..+....|.+
T Consensus 142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 344467789999999999999999988887754
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=177.01 Aligned_cols=173 Identities=21% Similarity=0.344 Sum_probs=121.9
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--ce------------------ee---cCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DK------------------VV---GNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~~d~ 603 (1011)
+.. |..+.+.+|++++|.|.+.+.|.+.+.|+|++. .. .. ....+|.|.+++.+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT 82 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence 444 788999999999999999999999999999531 11 00 1224899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|+|+|||+.+........
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 162 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSV 162 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEE
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEcc
Confidence 9999999984322233445677765 577663 333334589999999999985 55458999999998863200001
Q ss_pred EEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 679 SVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 679 ~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
....+. ......+.|.|.++..+|+|.|+|.|.|........
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (210)
T 1lk3_L 163 TDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV 205 (210)
T ss_dssp CCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred CCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence 111100 001124589999999999999999999998755433
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=177.30 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=124.9
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCC-----CeEEEEecCCce---------------------eec------CCCcEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPA-----PEITWIHEDSDK---------------------VVG------NSPNLTL 595 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~-----p~v~W~k~~~~~---------------------~~~------~~~~L~I 595 (1011)
..++..+.+.+|++++|.|.+.+.|. +.+.|+|++..+ ... .+.+|.|
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 84 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI 84 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence 34566788999999999999988774 389999974111 111 1248999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.| .+.....+.|.|..+|..... ....+..|+.++|.|.+.|.|.| .++|+++ |..+..
T Consensus 85 ~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p-~i~W~~~~g~~~~~- 160 (222)
T 3sbw_C 85 TDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA-EVIWTSSDHQVLSG- 160 (222)
T ss_dssp SSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCC-EEEEEETTCCEECC-
T ss_pred cCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCC-eEEEEECCCceecC-
Confidence 99999999999999998 345677888999877654322 12356789999999999999999 9999998 666542
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
......... .++....+.+..+..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus 161 -~~~~~~~~~--~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 161 -KTTTTNSKR--EEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp -EEEEEECC------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred -ccceEEEcC--CCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 111111111 122222223334456899999999999999999999999864
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=180.46 Aligned_cols=176 Identities=22% Similarity=0.343 Sum_probs=133.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCC-CeEEEEecCCcee-----------------------------ecCCCcEEEeec
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKV-----------------------------VGNSPNLTLLMT 598 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k~~~~~~-----------------------------~~~~~~L~I~~v 598 (1011)
..|.++.+.+|+++.|.|.+.+.+. +.+.|+|++.... ...++.|.|.++
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v 84 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA 84 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence 4577889999999999999999995 8999998764411 344567999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCC---eeec-CCceeeecCCcE-EEEEEE-EecCCCCeEEEEECCeEecc
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---TIIS-HRTQFGIPGDTA-RVECSA-FSIPPPEKVTWSYRGEEIGV 672 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P---~i~~-~~~~~v~~G~~v-~L~C~~-~g~p~p~~v~W~~~g~~l~~ 672 (1011)
+.+|+|.|+|.|.|...+..+..+.|.|..+| .+.. +....+..|+.+ +|.|.+ .|.|.| .+.|+++|..+..
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~i~W~~~~~~~~~ 163 (231)
T 2pet_A 85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-KITWYRNGQRLEV 163 (231)
T ss_dssp CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-EEEEEETTEECCC
T ss_pred CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-EEEEEECCccCcc
Confidence 99999999999999444778888899998775 4443 345557789988 999999 899999 9999999999875
Q ss_pred cC--CCCeEEecCCcCc--c---ceeEEEEcCCCCCCCEEEEEEEEc-----CCCC-eEEEEEEEe
Q psy17146 673 GS--SDDYSVLEDPLKE--G---IKSTLIIRESRHDHFGVYNCSVSN-----PYGS-DSVEIMLKP 725 (1011)
Q Consensus 673 ~~--~~~~~~~~~~~~~--~---~~~~L~I~~~~~~d~G~Y~C~a~N-----~~G~-~~~~~~l~V 725 (1011)
.. ..++.+....... + ..+.|.|.....+|.|.|+|.|.| ..|. .+..+.|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 32 1344444321111 1 136788886666679999999999 4555 556666654
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=174.51 Aligned_cols=173 Identities=13% Similarity=0.191 Sum_probs=127.5
Q ss_pred ecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcc
Q psy17146 41 VGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPA 118 (1011)
Q Consensus 41 ~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~ 118 (1011)
.|+.+.|.|.+.+ +.+.+.|+|++..+.. .+|+.+..++ +.++|.|.+++.+|+|.|+|.+.+.. +
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~------~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~n~~----~ 83 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY------SDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGK----T 83 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCC------CSSEEEEEET--TEEEEEEESCCGGGCEEEEEEEECSS----C
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccC------CCeEEEEEeC--CEEEEEECCCCcccCEEEEEEEecCC----c
Confidence 6788888898886 4679999999987643 2566665443 45689999999999999999999853 2
Q ss_pred eeeeEEEEEEEc------------------CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 119 IRSRFATLTVLV------------------PPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 119 ~~s~~~~l~V~~------------------~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
.....+.|.|.. .+.++.+. .+..+.+.+|+.+.|.|. +.|+|.+.+.|+|++..+..+.
T Consensus 84 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~-~~g~p~p~v~W~~~~~~~~~~~ 162 (212)
T 2r15_A 84 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN-VWGDPPPEVSWLKNEKALAQTD 162 (212)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEE-EECSSCCEEEEEETTEEECCCS
T ss_pred ceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEE-EcCCCCceEEEEECCeECccCC
Confidence 334444554431 01222333 234678899999999999 6799999999999998887765
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
++......+. .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 163 ~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~ 209 (212)
T 2r15_A 163 HCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSE--TSDFTVSVF 209 (212)
T ss_dssp SEEEEEETTT-----EEEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEEEEE
T ss_pred CEEEEEcCCC-----EEEEEEcCcchHHCeEEEEEEEcCCCcE--EEEEEEEEE
Confidence 5544443232 2689999999999999999999999876 445555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-20 Score=205.44 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=144.6
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------eccC
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNS 436 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~ 436 (1011)
+.|.|+|.+.+... ...+.+-.+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++.... ....
T Consensus 136 ~~~~~~C~~~~~l~----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~ 211 (347)
T 2ifg_A 136 PEQKLQCHGQGPLA----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPS 211 (347)
T ss_dssp GGGCCCCSSSSCSS----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSE
T ss_pred cccCCCCCCChHHh----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceeccc
Confidence 56899998876322 122233457888888888899999999999999999999999999986532 2345
Q ss_pred CcEEEEeeccCCCe-EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeE
Q psy17146 437 PNLTLLMTSDDLAG-RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 515 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G-~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 515 (1011)
+.|.|.+++.+|+| .|+|.|.|..+
T Consensus 212 ~~L~i~~v~~~D~G~~Y~C~a~n~~g------------------------------------------------------ 237 (347)
T 2ifg_A 212 LGLTLANVTSDLNRKNVTCWAENDVG------------------------------------------------------ 237 (347)
T ss_dssp EEEEEESCCSTTTTCCEEECCEETTE------------------------------------------------------
T ss_pred ceEEEeeCChHHCCCeEEEEEEcCCC------------------------------------------------------
Confidence 67999999999999 99999997532
Q ss_pred eeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-------
Q psy17146 516 IGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG------- 588 (1011)
Q Consensus 516 i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~------- 588 (1011)
.....+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.++|+|+|..+...
T Consensus 238 ----------------~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~ 297 (347)
T 2ifg_A 238 ----------------RAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEF 297 (347)
T ss_dssp ----------------ECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred ----------------CEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEE
Confidence 2222333344445554 1122357899999999999999999999998543311
Q ss_pred ---------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 589 ---------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 589 ---------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
..++|+|.+++.+|+|.|+|+|.| ..|..+..+.|.|.++|
T Consensus 298 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 298 LEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN-PFGQASASIMAAFMDNP 347 (347)
T ss_dssp CCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEE-TTEEEEEEEEECSCCCC
T ss_pred EeecCCCcccceEEEECCCCcccCceEEEEEec-CCCceeeEEEEEecCCC
Confidence 145699999999999999999999 68889999999998876
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=170.63 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=126.9
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.+.+.|..+.+.+|++++|.|.+.+. .+.+.|+|++..+... ...+.|.+++.+|+|.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------------------~~~~~~~~~~~~d~G~ 65 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------------TQPSYRFKANNNDSGE 65 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------------------CSSEEEEECCGGGCEE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------------------ccceEEEecccccCeE
Confidence 4667888999999999999999999984 5689999999776421 1247788999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+.. .+..+.|.|..++ .+...+...+.+|+.+.|.|.+..+.|.+.+.|+|++..+...
T Consensus 66 Y~C~~~~~~------~s~~~~l~v~~~~---~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------ 130 (170)
T 3ry4_A 66 YTCQTGQTS------LSDPVHLTVLFEW---LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------ 130 (170)
T ss_dssp EEEEETTSB------CCCCEEEEEECCS---EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE------
T ss_pred EEEEEeCCC------ceEeEEEEEECCc---eEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc------
Confidence 999998642 3445778887643 4444556678899999999995577788999999988765321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.. ...|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus 131 --~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V 169 (170)
T 3ry4_A 131 --HL------DPTFSIPQANHSHSGDYHCTGNIGYTLF-SSKPVTITV 169 (170)
T ss_dssp --SS------CCEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEE
T ss_pred --CC------CCeEEEEeccccCCEEEEEEEEeCcCcc-ccccEEEEE
Confidence 11 1479999999999999999999988742 344555544
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=179.14 Aligned_cols=153 Identities=22% Similarity=0.362 Sum_probs=113.5
Q ss_pred EcCCCcEEEEEEEecCCCCeEEEEecCCceee--cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc------
Q psy17146 556 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK------ 627 (1011)
Q Consensus 556 v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~------ 627 (1011)
+.+|++++|.|.+ |.+.+.|+|+|..+.. ..+++|.|.+++.+|+|.|+|.+.+. .+..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~----~s~~~~v~v~~~~~~~ 87 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQN----KSKPLQVYYRMGSADD 87 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSS----CCCCEEEEEEC-----
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCC----CCeeEEEEEEEecccc
Confidence 3689999999998 7899999999977653 45688999999999999999997652 2223555554
Q ss_pred ---------------------C----CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 628 ---------------------G----RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 628 ---------------------~----~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
. ++.+...+.....+|++++|.|. |.|.| .+.|+|+|..+......+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~ 164 (204)
T 1sy6_A 88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSD 164 (204)
T ss_dssp -------------------------------CCCCEEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEE
T ss_pred ccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecC
Confidence 1 23333323333348999999998 88999 89999999998643222222211
Q ss_pred CCcCccceeEEEEcCC-CCCCCEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 683 DPLKEGIKSTLIIRES-RHDHFGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
.+.|.|.++ ..+|+|.|+|.|.|..|. .+..+.|.+
T Consensus 165 -------~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 165 -------EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp -------TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred -------CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 368999999 999999999999999996 367777765
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=180.78 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=132.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCC------CeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKT------GVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~------~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
++.+...|.++.+.+|++|+|.|.+.+.. +.+.|+|++...... ......+|+.+.. ..+.++|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 115 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTL 115 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEE
Confidence 56788889999999999999999998854 789999854211000 0111235777654 3456799
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k 170 (1011)
+|.+++.+|+|.|+|.+.+... ......+.|.|.....+|.+.. .+.....+|+.+.|.|.+.+..|+ +.++|+|
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~---~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k 192 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFP---PTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 192 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSS---CEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EECcCCcccCEEEEEEEEcCcc---eEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEE
Confidence 9999999999999999987532 1223345777876555555542 222233457899999994443565 5799999
Q ss_pred CCceeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+....... ......+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 193 ~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 193 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp SSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 998876651111111 1122244556899999999999999999999987654
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=174.96 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=131.4
Q ss_pred eeCCCceEecCCCcEEEEee-cCCCCC-CceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCc
Q psy17146 394 RARPYSVQVDRGAGVNLLCD-VDGNPA-PEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 462 (1011)
Q Consensus 394 ~~~p~~~~v~~G~~v~l~C~-~~g~p~-p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 462 (1011)
...+....+.+|+.+.|.|. +.+.|. +.+.|+|++.... ......|.|.+++.+|+|.|+|.+.|..+.
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 91 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT 91 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence 34557889999999999999 889999 9999999985542 335678999999999999999999984332
Q ss_pred cee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 463 EVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 463 ~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
... ..+.+.+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------~ 109 (201)
T 3s97_C 92 KSVFSKFIPLIPIPERT--------------------------------------------------------------T 109 (201)
T ss_dssp EEEECCCEEEEEECCSS--------------------------------------------------------------C
T ss_pred cchhhcccceeeccccc--------------------------------------------------------------c
Confidence 221 122222211000 0
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
...+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|.|.| ..
T Consensus 110 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 188 (201)
T 3s97_C 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAEN-IR 188 (201)
T ss_dssp CCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEE-TT
T ss_pred CCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEe-cC
Confidence 1134556655567889999999999999999999999999986443 34567999999999999999999999 67
Q ss_pred CceeeEEEEEEc
Q psy17146 616 PEVGAEATVYLK 627 (1011)
Q Consensus 616 ~~~s~~~~l~V~ 627 (1011)
|..+..+.|.|+
T Consensus 189 g~~~~~~~l~V~ 200 (201)
T 3s97_C 189 GKDKHQARIYVQ 200 (201)
T ss_dssp EEEEEEEEEEEE
T ss_pred CceeeeEEEEEe
Confidence 788888888875
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=175.52 Aligned_cols=190 Identities=18% Similarity=0.257 Sum_probs=133.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++..... .......+|+.+.. ..+.++|+|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCC
Confidence 456777899999999999999999984 679999985321110 01111245777763 3467799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVM 176 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~ 176 (1011)
.+|+|.|+|.+.+... ......+.|.|.....+|.+.. .+...+.+|+.+.|.|.+.++.| .+.++|+|++..+.
T Consensus 80 ~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 156 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYP---WTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR 156 (213)
T ss_dssp GGGCSEEEEEECSSSS---CEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred cccCEEEEEecccCCc---eEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence 9999999999987532 2234457788865556666543 33444557888999999544444 45899999998876
Q ss_pred ece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 177 SNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+. ............+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 157 ~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 157 DGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 543 2221222233356666889999999999999999999987654
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=182.96 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=129.1
Q ss_pred cceeecCCceeEEecCcEEEEEEEc---C-CCCeeEEeeCCeecCCccc------------CCCCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVI---D-KTGVLQWTKDDFALGPHRN------------LSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~---~-~~~~v~W~k~~~~l~~~~~------------~~~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...+.++.+.+|++|+|.|.+. + +.+.+.|+|++........ -...+|+.+..+...++.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 5678888999999999999999998 2 4457999997643321100 0112577776555566689
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEc--cCCCCCcEEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS--ANGKPPAEITWI 169 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~--~~g~P~~~i~W~ 169 (1011)
|.|.+++.+|+|.|+|.+.+.... ...+..+.|.|. +.. +..+.+.+|+.+.|.|.+ ..+.|.+.+.|+
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~~l~V~--~~~-----p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~ 156 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNES--MVMKKPVELWVL--PEE-----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM 156 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCC--CEEEEEEEEEEE--CCC-----CSEEEEETTCCEEECCBCEESSSSCCCEEEEE
T ss_pred EEECCCCHhHCEEEEEEEEecCCc--ceEEEEEEEEEe--ccC-----CCccccccCCcEEEEEEecCCCCCCccceEEE
Confidence 999999999999999999985322 234455666665 222 236678899999999994 278899999999
Q ss_pred eCCceeee-ceeEEEe-------eecCC----ce------EEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 170 DGTGTVMS-NVRVTEE-------ASVDG----RR------TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 170 k~~~~l~~-~~~~~~~-------~~~~~----~~------~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
|+++.... ....... ...++ +. ....++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~ 234 (268)
T 3mj6_A 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES--RKTIVLH 234 (268)
T ss_dssp EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEE
T ss_pred ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE--EEEEEEE
Confidence 95443221 1111000 00000 00 0113589999999999999999999977754 5666666
Q ss_pred EEeCCceEEEecCcceeecCc
Q psy17146 232 VKYAPKVQVSVIGSNRLVEGT 252 (1011)
Q Consensus 232 v~~~P~~~~~~~~~~~v~~g~ 252 (1011)
|...|......+....+.+|+
T Consensus 235 V~~~~p~~~~~p~~~~~~~~q 255 (268)
T 3mj6_A 235 VVQDEFQRTISPTPPTDKGQQ 255 (268)
T ss_dssp EECC-----------------
T ss_pred EEcCCCeeeeCCCCCCCCcce
Confidence 643333222223333444444
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=176.11 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=134.5
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|.. .+.+|++|+|.|.+......+.|+|++..+..... +. .......+|.|.+++.+|+|.|
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~-----~~----~~~~~~~~L~I~~v~~~DsG~Y 75 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP-----KP----PERINKVKFYIPDMNSRMAGQY 75 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC-----SS----CTTCCEEEEEECSCCGGGCEEE
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCCCCcEEEEEECCCccccccc-----cc----cCCcceeEEEecCCCcccCeEE
Confidence 45788888988 89999999999999877678999999976531100 00 0122345899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.++|.|. +.+. .+.+.|+|++..+.....
T Consensus 76 ~C~~~~~~~--~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~-~~~~-~~~~~w~k~g~~~~~~~~----- 146 (242)
T 1p6f_A 76 SCIYRVGEL--WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LDTA-TSMFLLLKEGRSSHVQRG----- 146 (242)
T ss_dssp EEEEEETTE--ECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEE-CTTS-CSEEEEEECSSSCEEEEE-----
T ss_pred EEEEecCCc--cccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEe-cCCC-CCEEEEEECCCccCcccc-----
Confidence 999976421 1224667889998766666766544556789999999999 4444 459999999887654110
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC-CCceeEEEEEEEEEeC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYA 235 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~-g~~~~s~~v~v~v~~~ 235 (1011)
... ....|.|.+++.+|+|.|+|.+.|.. .....+..+.|.|...
T Consensus 147 ~~~-----~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 147 YGK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp ECS-----SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred CCC-----ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 111 13689999999999999999999874 1223456677777653
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=174.49 Aligned_cols=188 Identities=16% Similarity=0.246 Sum_probs=128.0
Q ss_pred eeecCCceeEEecCcEEEEEEEc-CC--CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI-DK--TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~-~~--~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
|.. |.++.+.+|++|+|.|.+. ++ .+.+.|+|++..... .......+|+.+.. ..+.++|+|.+++
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 80 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQ 80 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCC
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCC
Confidence 444 7889999999999999964 43 468999996521110 00011235777654 3456799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVM 176 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~ 176 (1011)
.+|+|.|+|.+.+... .......+.|+|...+.+|.+.. .+.....+|+.+.|.|.+.++.|.+ +++|+|++..+.
T Consensus 81 ~~D~G~Y~C~~~~~~~--~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 158 (216)
T 2xzc_L 81 TGDEADYYCGTWDSSL--NPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 158 (216)
T ss_dssp GGGCEEEEEEEECTTS--CEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred cccCEEEEEEEEeCCC--cceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence 9999999999998542 01233446788866555565543 2222234688999999955446765 999999998876
Q ss_pred eceeEEEe-eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 177 SNVRVTEE-ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+...... .......+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 55111111 11222345566799999999999999999999987654
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-19 Score=177.24 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=111.6
Q ss_pred EEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEee-cCCCCCEEEEEEEEecCCCceeeEEEEEEcC--CC
Q psy17146 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLM-TSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RP 630 (1011)
Q Consensus 554 ~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~--~P 630 (1011)
....+|+.++|.|.+.+ +. .++|+|+|..+....+++|.|.+ +..+|+|.|+|.|.| ..+..+..+.+.|.. +|
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n-~~g~~~~~~~~~v~~~~~~ 85 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA-SNKNTYLYLKARVGSADDA 85 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSS-CCCCCCEEECCCCCSCCCC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEe-CCCcEEEEEEEEEeccccc
Confidence 34578999999999988 44 49999999877666778999999 999999999999999 445555555555432 22
Q ss_pred ee----------------ecC-----Cc---eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 631 TI----------------ISH-----RT---QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 631 ~i----------------~~~-----~~---~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.. ... .. ..+.+|++++|.|.+ |.| .|+|+|||..+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p-~i~W~k~g~~i~~~~~----------- 150 (186)
T 1jbj_A 86 KKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK-TIKWLKDGSIISPLNA----------- 150 (186)
T ss_dssp CCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCS-CEEEEETTEECCCSSC-----------
T ss_pred ccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCC-eEEEEECCEECcccCC-----------
Confidence 21 100 01 224499999999998 888 9999999999863211
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 --~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 --TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp --CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred --CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 24689999999999999999999999976
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=179.43 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=131.5
Q ss_pred CceeEEecCcEEEEEEEcCCC------CeeEEeeCCeecCCcc-------cCCCCcceEEeecC-CCceeEEEEeecccC
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKT------GVLQWTKDDFALGPHR-------NLSGFDRYAMIGSD-EEGDYSLEIYPVMLD 100 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~------~~v~W~k~~~~l~~~~-------~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~ 100 (1011)
+.+.+.+|++|+|.|.+.+.. ..+.|++++....... .....+|+.+..+. ..+.++|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 457889999999999988742 5899999874431100 01123455554322 234668999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec-e
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN-V 179 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~ 179 (1011)
|+|.|+|.+.+.. ..+..+.|.|..++..+.+...+...+.+|+.+.|.|.+..+.|.+.+.|+++++..... .
T Consensus 83 D~G~Y~C~~~~~~-----~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~ 157 (222)
T 4i0k_A 83 DEGSYTCFVSIQD-----FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV 157 (222)
T ss_dssp GCSCEEEEEEECC-----CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE
T ss_pred cCEEEEEEEEeCC-----CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc
Confidence 9999999999752 234557788888877788776666677899999999995489999999999965554442 2
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCC
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P 236 (1011)
........++. ...|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|
T Consensus 158 ~~~~~~~~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p 208 (222)
T 4i0k_A 158 TTSQMANERGL----FDVHSVLRVVLGANGTYSCLVRNPVLQQ--DAHGSVTITGQP 208 (222)
T ss_dssp EEEEEECTTSC----EEEEEEEEEECCTTCEEEEEEEETTTTE--EEEEEEECCC--
T ss_pred ceeEEcCCCCe----EEEEEEEEEEeCCCCEEEEEEECCCCCC--ceEEEEEEeCCc
Confidence 32222222321 2468899999999999999999999987 455556565555
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=175.38 Aligned_cols=195 Identities=21% Similarity=0.378 Sum_probs=135.7
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-C---eeEEeeCCeecCC----------cccCCCCcceEEee-----cCCCceeEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-G---VLQWTKDDFALGP----------HRNLSGFDRYAMIG-----SDEEGDYSLE 93 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-~---~v~W~k~~~~l~~----------~~~~~~~~r~~i~~-----~~~~~~~~L~ 93 (1011)
.|.++++.+|++|+|.|.+.++. + .|.|+|++..+.. .......+|..+.. ....+.++|+
T Consensus 7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~ 86 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA 86 (225)
T ss_dssp CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence 35678999999999999998743 3 4899998754311 01111223333322 2234567899
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|.+.+... ........+.+..++. ...........+++.+.+.|.+..+.|++.+.|++++.
T Consensus 87 I~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~ 161 (225)
T 4fmk_A 87 FRGLRVEDEGNYTCEFATFPN---GTRRGVTWLRVIAQPE--NHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG 161 (225)
T ss_dssp ECSCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCCE--EEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred EccCCHHHCcceEEEEEeCCC---cceeeeeeeeeecCCc--eeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence 999999999999999987532 2234445555555443 22223344456778888888878889999999999988
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
.+...... .......+...+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|.+.
T Consensus 162 ~~~~~~~~---~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 162 GEAKDTQE---PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH 220 (225)
T ss_dssp CEEEEEEE---ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred cccCCcce---EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence 77654333 222333455667899999999999999999999999887778888877653
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=173.95 Aligned_cols=186 Identities=18% Similarity=0.259 Sum_probs=127.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-C---CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-K---TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~---~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.. |..+.+.+|++|+|.|.+.+ + .+.+.|+|++. .+. . .......+|+.+.. ..+.++|+|.++
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 80 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGA 80 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCC
Confidence 455 88999999999999999987 3 36899999742 210 0 00011235776654 245679999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|+|.+.+... ...+..+.|.|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|++ .++|+|++..
T Consensus 81 ~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 157 (212)
T 1q0x_L 81 QTEDEAIYFCALWSNNK---LVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP 157 (212)
T ss_dssp CGGGCEEEEEEEECSSC---EEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred CccCCEEEEEEEecCch---hhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEe
Confidence 99999999999988532 122344677775433 3455432 2333345789999999954445554 9999999888
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..+.............+...+.|.|.++..+|+|.|+|.|.|....
T Consensus 158 l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 158 VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 76553321112222335556678999999999999999999997553
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=177.49 Aligned_cols=191 Identities=19% Similarity=0.307 Sum_probs=126.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCC------------cccCCCCcceEEeecCCCceeEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGP------------HRNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~------------~~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+.+...| .+.+.+|++|+|.|.+.+. .+.+.|+|....-.. .......+|+.+.. ..+.++|+
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~ 78 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLS 78 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEE
Confidence 4566667 9999999999999999875 568999994311000 00111225777665 34677999
Q ss_pred EeecccCCCceEEEEEEeCCCCC-cceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGE-PAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~-~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
|.+++.+|+|.|+|.+.+..+.. ....+..+.|+|...+ .+|.+.. .+...+.+|+.+.|.|.+.++.|.+ .++|+
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~ 158 (218)
T 3s96_B 79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK 158 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence 99999999999999998853210 1134455788888655 4455432 3333445678999999955447877 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+..+.........+ ..+...+.|.|.....+|+|.|+|.|.|..+..
T Consensus 159 k~g~~l~~~~~~~~~~~~~-~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~ 210 (218)
T 3s96_B 159 ANGTPITQGVDTSNPTKEG-NKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV 210 (218)
T ss_dssp ETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred ECCEECcCceecCcccccC-CcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence 9998876533222122222 234445779999999999999999999987643
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=172.96 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=120.9
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
..+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+.. ...+.|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 34677777776 6789999999999997 47789999999976431 234789999999999999999998
Q ss_pred ecC----CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 612 VMG----FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 612 n~~----~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
|.. ....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+ +.+ .+.|+|+|..+.... .......
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~--~~~~~~~- 158 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYD-MYHLSREGEAHERRL--PAGPKVN- 158 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCS-EEEEEETTCSSCEEE--ECEEEET-
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCc-eEEEEECCcccCccc--ccccccC-
Confidence 732 23456677788864 47776444457899999999999886 456 899999998765311 1111110
Q ss_pred cCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
......|.|.+++ |+|.|+|.|.|..
T Consensus 159 --~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 159 --GTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp --TEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred --CceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 1225789999998 9999999999763
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=175.08 Aligned_cols=174 Identities=16% Similarity=0.238 Sum_probs=122.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC---CCeEEEEecCC--ce------------------ee---cCCCcEEEeecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIHEDS--DK------------------VV---GNSPNLTLLMTSD 600 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~ 600 (1011)
+.. |..+.+.+|++++|.|.+.+.| .+.+.|+|++. .. .. ....+|+|.+++.
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT 82 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence 445 7888999999999999999988 47999999742 11 00 1234899999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~ 674 (1011)
+|+|.|+|.|.|.........+.|.|. .+|.+.. +....+..|+.++|.|.+.|.+ .+..|+|+|||+.+..+.
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 162 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM 162 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence 999999999998432223345567773 5677763 3333455799999999999864 445899999999986421
Q ss_pred CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
................+.|.|..+..+|.|.|+|.|.|..+....++
T Consensus 163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 00000111100011346899999999999999999999987655444
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-18 Score=176.29 Aligned_cols=175 Identities=17% Similarity=0.244 Sum_probs=123.1
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC-CCCeEEEEecCC---c---------------------ee---ecCCCcEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDS---D---------------------KV---VGNSPNLTLL 596 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~p~v~W~k~~~---~---------------------~~---~~~~~~L~I~ 596 (1011)
|.+...| .+.+.+|++++|.|.+.+. |.+.+.|+|... . .. .....+|+|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 4566667 8899999999999999999 999999999421 1 00 1123469999
Q ss_pred ecCCCCCEEEEEEEEecCC----CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 597 MTSDDLAGRYYCKASVMGF----PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
+++.+|+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|. |.|..|+|+||
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~ 160 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN 160 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence 9999999999999998321 134556678887 5677663 444455678999999999984 65658999999
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|..+..+.........+ ......+.|.|.....+|.|.|+|.|.|..|....++
T Consensus 161 g~~l~~~~~~~~~~~~~-~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 161 GTPITQGVDTSNPTKEG-NKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp TEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred CEECcCceecCcccccC-CcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 99986421111111110 0011235689999988999999999999998766554
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=182.88 Aligned_cols=188 Identities=14% Similarity=0.204 Sum_probs=121.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc-------------ccCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH-------------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~-------------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+...|..+.+.+|++|+|.|.+.+. .+.+.|+|+....... ......+|+.+..+...+.++|+
T Consensus 25 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 104 (291)
T 2gki_A 25 QLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME 104 (291)
T ss_dssp EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred EEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence 3445778999999999999999873 4689999964211000 00011357777654445678999
Q ss_pred EeecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC-----------C--CCCeeec-CCeeeecCCCcEEEEEEcc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP-----------P--DPPRIVQ-GDTLYTTEDREIELECISA 158 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~-----------p--~~~~i~~-~~~~~v~eg~~v~L~C~~~ 158 (1011)
|.+++.+|+|.|+|.+.+...+ ........+.|+|..+ + .++.+.. +..+.+.+|+.++|.|. +
T Consensus 105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~ 183 (291)
T 2gki_A 105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCK-S 183 (291)
T ss_dssp ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEE-E
T ss_pred ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEE-c
Confidence 9999999999999999885311 1112223457777761 1 1333443 44678899999999999 6
Q ss_pred CCCCCc------EEEEEeCC--cee---eeceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 159 NGKPPA------EITWIDGT--GTV---MSNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 159 ~g~P~~------~i~W~k~~--~~l---~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.|.+ .+.|+|+. ..+ ...... .......+... ...+|+|.+++.+|+|.|+|.|.|..
T Consensus 184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWAST-RESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp SSCCEETTTTEECEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCccccccccceeEEEEEECCCCCcEEEEEEccc-CCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 677765 89999963 211 100000 00000122111 12589999999999999999999853
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=178.63 Aligned_cols=205 Identities=19% Similarity=0.162 Sum_probs=122.1
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee----------ccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..... .....|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~ 83 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV 83 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence 3677777776 67899999999999974 5679999999875421 1345799999999999999999986
Q ss_pred cCC----cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCc
Q psy17146 459 MGF----PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534 (1011)
Q Consensus 459 ~~~----~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~ 534 (1011)
... ...+..+.|.|...+
T Consensus 84 ~~~~~~~s~~S~~~~L~V~~~~---------------------------------------------------------- 105 (257)
T 1b6u_A 84 THSPYQLSAPSDPLDIVITGLY---------------------------------------------------------- 105 (257)
T ss_dssp SSCTTSCCCCCCCEEEEEECSS----------------------------------------------------------
T ss_pred cCCCccccccCCCEEEecccCC----------------------------------------------------------
Confidence 321 122333444432210
Q ss_pred ccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CCCcEEEeecCCCCCE
Q psy17146 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 535 ~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~~~d~G 604 (1011)
.+|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+... .+..|.|.+++ |+|
T Consensus 106 --------~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G 173 (257)
T 1b6u_A 106 --------EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGG 173 (257)
T ss_dssp --------CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCE
T ss_pred --------CCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCE
Confidence 1244444443 2467888888888887754 688899988665421 25689999998 999
Q ss_pred EEEEEEEecC----CCceeeEEEEEEcCCCeeecC--CceeeecCCcEEEEEEEEecCCCCeEEEEECC
Q psy17146 605 RYYCKASVMG----FPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 667 (1011)
Q Consensus 605 ~Y~C~a~n~~----~~~~s~~~~l~V~~~P~i~~~--~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g 667 (1011)
.|+|.|.|.. ....+..+.|.|.++|.+..+ .......|..+.|.|.+ |.+.+ .|.|..-+
T Consensus 174 ~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~-~~~~~~~~ 240 (257)
T 1b6u_A 174 TYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLI-SEEDLNLD 240 (257)
T ss_dssp EEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------------
T ss_pred EEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHH-HHHHhhhh
Confidence 9999999732 345677899999999987633 23345679999999875 66777 78997643
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=175.68 Aligned_cols=174 Identities=16% Similarity=0.289 Sum_probs=125.4
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cce------------------e---ecCCCcEEEeecCCCC
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDK------------------V---VGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~------------------~---~~~~~~L~I~~v~~~d 602 (1011)
.+...+ .+.+.+|++++|.|.+. +.+.+.|+|+. ... . .....+|+|.+++.+|
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 79 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD 79 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence 455566 88999999999999999 88999999952 111 0 1223579999999999
Q ss_pred CEEEEEEEEecCC-CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCC
Q psy17146 603 AGRYYCKASVMGF-PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~-~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~ 675 (1011)
+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|.++ +..+.|++||..+..+..
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 159 (211)
T 3tv3_L 80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE 159 (211)
T ss_dssp CEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred CEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcc
Confidence 9999999999422 246667788887 6777763 33444558999999999999643 238999999999863111
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
...............+.|.|..+..+|.|.|+|.|.|..|...+++.
T Consensus 160 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 160 TTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp ECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred cCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 10011111000112368999999999999999999999987766654
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=176.09 Aligned_cols=188 Identities=20% Similarity=0.334 Sum_probs=130.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.+...| .+.+.+|++|+|.|.+. +.+.+.|+|+. ..+. ........+|+.+.. ..+.++|+|.+++.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 78 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT-SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTD 78 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC-CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC-CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChh
Confidence 455556 89999999999999999 88899999953 2110 000111235777654 346779999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceeee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMS 177 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~ 177 (1011)
|+|.|+|.+.+.... ...+..+.|.|...+ .+|.+.. +....+.+|+.+.|.|.+.+..| .+.+.|+|++..+..
T Consensus 79 D~G~Y~C~~~~~~~~--~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 156 (211)
T 3tv3_L 79 DEAVYYCGSLVGNWD--VIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA 156 (211)
T ss_dssp GCEEEEEEEEETTTE--EEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred HCEEEEEEEecCCCc--eeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence 999999999985321 134555778887433 3444432 22333447999999999543333 689999999988765
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.............+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~ 201 (211)
T 3tv3_L 157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 201 (211)
T ss_dssp TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence 333222222333455666789999999999999999999987543
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=175.64 Aligned_cols=176 Identities=17% Similarity=0.227 Sum_probs=121.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCCe-----EEEEecCCcee---------------------------ecCCCcEEEe
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAPE-----ITWIHEDSDKV---------------------------VGNSPNLTLL 596 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p~-----v~W~k~~~~~~---------------------------~~~~~~L~I~ 596 (1011)
..|..+.+.+|++++|.|.+.+.|.+. +.|+|++.... ...+.+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 456678899999999999999998876 99999742210 0123459999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEeccc--
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVG-- 673 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~-- 673 (1011)
+++.+|+|.|+|.|.| ..+.....+.|.|..+|.+.......+..|+.++|.|.+.| .|.|+.|+|+++|+.+...
T Consensus 88 ~v~~~D~G~Y~C~~~~-~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVV-TPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp SCCGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCCHHHCeEEEEEEEe-CCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999999999 45677788999999999987554455667888999999999 6877789999999654311
Q ss_pred -CCCC--eEEecC-CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE--EEEEEEe
Q psy17146 674 -SSDD--YSVLED-PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS--VEIMLKP 725 (1011)
Q Consensus 674 -~~~~--~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~--~~~~l~V 725 (1011)
.... .....+ .......+.|.|.....+|.|.|+|.|.|..+... ..+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0000 001110 00011246899999999999999999999999754 4555544
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=169.62 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=115.0
Q ss_pred CceeEEecCcEEEEEE-Ec--CCCCeeEEeeCCeecCCc----ccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 35 QDQTAVVGSRVTLPCR-VI--DKTGVLQWTKDDFALGPH----RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~-v~--~~~~~v~W~k~~~~l~~~----~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
..+.+.+|++|+|.|. .. .+.+.+.|+|++..+... ..+...+|+.+..+ + +|+|.+++.+|+|.|+|
T Consensus 4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~---g--sL~I~~v~~~D~G~Y~C 78 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---G--DLKIKNLTRDDSGTYNV 78 (176)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---S--CEEESSCCGGGCEEEEE
T ss_pred eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC---C--cEEEcccccccCEEEEE
Confidence 3477899999999994 33 234589999999655311 11223467777432 2 59999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeec
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV 187 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~ 187 (1011)
.+.+..+. ...+..+.|.|..++..|.+. ..+..+.|.|. +.+.|.++|+|+|++..+..+.
T Consensus 79 ~~~n~~g~--~~~~~~~~l~V~~~~~~p~i~-------~~~~~v~L~C~-~~g~p~p~i~W~~~g~~l~~~~-------- 140 (176)
T 1hng_A 79 TVYSTNGT--RILNKALDLRILEMVSKPMIY-------WECSNATLTCE-VLEGTDVELKLYQGKEHLRSLR-------- 140 (176)
T ss_dssp EEEETTCC--EEEEEEEEEEEECCCCCCEEE-------EETTTTEEEEE-CSSCSSCEEEEEETTEEEEEES--------
T ss_pred EEEeCCCC--EEEEEEEEEEEeCCCCCCEEE-------ecCCcEEEEEE-ecCCCCcEEEEEECCEECCCCC--------
Confidence 99986432 123667888898876655543 22456899999 7788999999999887764321
Q ss_pred CCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee
Q psy17146 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 188 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
.+.|..++.+|+|.|+|.|.|..|....
T Consensus 141 ---------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~ 168 (176)
T 1hng_A 141 ---------QKTMSYQWTNLRAPFKCKAVNRVSQESE 168 (176)
T ss_dssp ---------SSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred ---------cEEEEEEEccCCeEEEEEEEecCCCcee
Confidence 1344477899999999999999986633
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=168.24 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=115.5
Q ss_pred cCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCcee------------------------ecCCCcEEEeecCCCCC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKV------------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~------------------------~~~~~~L~I~~v~~~d~ 603 (1011)
..|..+.+.+|++++|.|.+.+ .+.+.|.|+|++..+. ...+++|+|.+++.+|+
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT 82 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence 4567888999999999999976 4567999999864221 12357899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCC---eeecCCceeeecCC-cEEEEEEEEecC-CCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRP---TIISHRTQFGIPGD-TARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P---~i~~~~~~~v~~G~-~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.| ..+.....+.|.|..+| .|.... .....|. .++|.|.+.|.| .| .|+|+++|..+..
T Consensus 83 G~Y~C~~~~-~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p-~i~W~~~g~~l~~------ 153 (193)
T 2if7_A 83 GSYRAQIST-KTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNV-SFRWEALGNTLSS------ 153 (193)
T ss_dssp EEEEEEEEC-SSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTC-EEEEEETTEEEES------
T ss_pred ceEEEEEEe-cCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCce-EEEEEeCCEEcCC------
Confidence 999999998 44555668888887664 333322 2233465 899999999965 67 9999999987642
Q ss_pred EEecCCcCccceeEEEEcCCCCC-CCEEEEEEEEcCCCCeEEEEEE
Q psy17146 679 SVLEDPLKEGIKSTLIIRESRHD-HFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 679 ~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...|.|.....+ |.|.|+|.|.|.+|..+..+.+
T Consensus 154 -----------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~~ 188 (193)
T 2if7_A 154 -----------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSA 188 (193)
T ss_dssp -----------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEEH
T ss_pred -----------CCeEEEEeccCcCCCCcEEEEEECCCCcccccccc
Confidence 135666544444 8999999999999988766543
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=175.33 Aligned_cols=179 Identities=17% Similarity=0.307 Sum_probs=127.5
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~~ 601 (1011)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.+.. .. .....+|+|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 4566668889999999999999999999999999984311 00 112348999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEE---cCCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYL---KGRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V---~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~ 676 (1011)
|+|.|+|.|.|.........+.|.| ..+|.+.. +....+..|+.++|.|.+.|.++ +..++|+|+|..+..+...
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 9999999999843334455567777 66777763 44445667889999999998754 3489999999998632100
Q ss_pred CeEEec-CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 677 DYSVLE-DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 677 ~~~~~~-~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...... ........+.|.|.....+|.|.|+|.|+|..........+
T Consensus 162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~~ 209 (213)
T 3r06_A 162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKTL 209 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEec
Confidence 111111 00001124578899999999999999999998665544443
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=176.28 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=131.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC---------cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP---------HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~---------~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|....... .......+|+.+..+...+.++|+|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 56778889999999999999999987 6679999985311100 0111224577776555667889999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-----------------CCCCCeee-cCCeeeecCCCcEEEEEEccC
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-----------------PPDPPRIV-QGDTLYTTEDREIELECISAN 159 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-----------------~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~ 159 (1011)
+.+|+|.|+|.+.+............+.|.|.. ...++.+. .+..+.+.+|+.++|.|. +.
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~ 162 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCR-QT 162 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEE-EC
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEE-cC
Confidence 999999999999885432223344557788886 22344444 445677889999999999 44
Q ss_pred CCCCcEEEEEeCCceeeeceeEE-------EeeecCCceEE-----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 160 GKPPAEITWIDGTGTVMSNVRVT-------EEASVDGRRTT-----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 160 g~P~~~i~W~k~~~~l~~~~~~~-------~~~~~~~~~~~-----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
+. .+.+.|+|............ .......+... ...+|.|.+++.+|+|.|+|.|.|..|....-.-
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~g 241 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEG 241 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCC
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCC
Confidence 55 66999998431111000000 00000111110 1247999999999999999999998774432233
Q ss_pred EEEEEE
Q psy17146 228 LKLLVK 233 (1011)
Q Consensus 228 v~v~v~ 233 (1011)
.+|.|.
T Consensus 242 t~l~v~ 247 (256)
T 3tf7_C 242 SKLTVL 247 (256)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 344444
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=177.29 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=128.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+.. |..+.+.+|++|+|.|.+.+ +.+.+.|+|++ ..+. . .......+|+.+.. ..+.++|+|.+++.+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 79 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPE 79 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGG
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcc
Confidence 444 88999999999999999876 45689999864 2210 0 00111135777654 235678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMS 177 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~ 177 (1011)
|+|.|+|.+.+.... .......+.|.|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|+ +.++|+|++..+..
T Consensus 80 D~G~Y~C~~~n~~~~-~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~ 158 (212)
T 1nfd_E 80 DEAAYYCLSSYGDNN-DLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND 158 (212)
T ss_dssp GCSEEEEEEEETTTT-EEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred cCEEEEEEEEcccCc-ccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence 999999999973221 1223344677786543 3455543 333344579999999995444465 89999999988765
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+............ +...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 159 ~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (212)
T 1nfd_E 159 GVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETV 202 (212)
T ss_dssp SCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred CeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence 4322111111222 5556789999999999999999999987653
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=170.92 Aligned_cols=164 Identities=17% Similarity=0.205 Sum_probs=118.4
Q ss_pred eEEEcCCCcEEEEEEEe----cCCCCeEEEEecCCcee--------------------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVD----GNPAPEITWIHEDSDKV--------------------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~----g~p~p~v~W~k~~~~~~--------------------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
.+.+.+|++++|.|.+. +.|.+.+.|++++..+. ...+.+|+|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 56788999999999995 45678999999876541 2245789999999999999999
Q ss_pred EEEecCCCce----eeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEE
Q psy17146 609 KASVMGFPEV----GAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSV 680 (1011)
Q Consensus 609 ~a~n~~~~~~----s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~ 680 (1011)
.|.|...... ...+.|.|..+ |.+.. .....|+.++|.|.+. |.|.| .|+|++||..+... ..++..
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~~~l~C~~~~g~P~p-~i~W~k~g~~l~~~-~~~~~~ 157 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISD---FEIPTSNIRRIICSTSGGFPEP-HLSWLENGEELNAI-NTTVSQ 157 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---EECSSTTEEEEEEEEEEESSCE-EEEEEESSCEECCS-EEEEEE
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEe---ccCCCCCeEEEEEecCCccCCC-EEEEEECCEECccc-cceEEe
Confidence 9999422222 46778888776 44432 1124588999999995 99999 99999999988732 112221
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
..+ .+......+..+..+|.|.|+|.|.|..|..++.+.+.
T Consensus 158 ~~~---~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~ 198 (201)
T 1dr9_A 158 DPE---TELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198 (201)
T ss_dssp CTT---TCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred cCC---CcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence 111 12222223344556899999999999999998887763
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=176.41 Aligned_cols=169 Identities=18% Similarity=0.275 Sum_probs=126.2
Q ss_pred eEEEcCCCcEEEEEEEecCCC-----CeEEEEecCCcee-------------------ec------CCCcEEEeecCCCC
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPA-----PEITWIHEDSDKV-------------------VG------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~-----p~v~W~k~~~~~~-------------------~~------~~~~L~I~~v~~~d 602 (1011)
.+.+.+|++++|.|.+.+.+. +.+.|++++.... .. .+.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 456789999999999998865 6899999874431 11 15789999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEE-CCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSY-RGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~-~g~~l~~~~~~~ 677 (1011)
+|.|+|.+.|.+ ..+..+.|.|..+ |.+.......+..|+.++|.|.+ .|.|.| .+.|++ ++..+.. ...
T Consensus 84 ~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~-~v~W~~~~~~~~~~--~~~ 158 (222)
T 4i0k_A 84 EGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA-EVFWKDGQGVPLTG--NVT 158 (222)
T ss_dssp CSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC-EEEEECTTSCBCCS--EEE
T ss_pred CEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC-eEEEEcCCCccCCC--Ccc
Confidence 999999999843 4455666777654 67766556678899999999999 888999 999999 5555432 111
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.... ....+....|.|.++..+|.|.|+|.|.|..|....++.|.|.+.
T Consensus 159 ~~~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 159 TSQM--ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp EEEE--ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred eeEE--cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 1111 112444567899999999999999999999999999999999754
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=173.90 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=124.8
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC--C---------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG--P---------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~--~---------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+... +. . .......+|+.+..+...+.++|+|.+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (247)
T 2ghw_B 8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS 87 (247)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence 4567899999999999999874 468999995321 10 0 001112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC------------CCCeee-cCCeeeecCCCcEEEEEEccCCCCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP------------DPPRIV-QGDTLYTTEDREIELECISANGKPP 163 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p------------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~ 163 (1011)
++.+|+|.|+|.+.+... ....+..+.|+|...+ .++.+. .+..+.+.+|+.+.|.|. +.+.|.
T Consensus 88 v~~~D~G~Y~C~~~n~~~--~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~ 164 (247)
T 2ghw_B 88 LRAEDTAVYYCARDRSYY--LDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCR-ASQSVR 164 (247)
T ss_dssp CCGGGCEEEEEEEEETTE--EEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEE-ESSCCT
T ss_pred CCHHHCEEEEEeeeccCC--ccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEE-eCCCcc
Confidence 999999999999988511 1223344678887653 233343 345677899999999999 678888
Q ss_pred cEEEEEe--CCceeeecee--EEEeeecCCceE----EEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 164 AEITWID--GTGTVMSNVR--VTEEASVDGRRT----TVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 164 ~~i~W~k--~~~~l~~~~~--~~~~~~~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.|+| ++..+..-.. .........+.. ....+|.|.+++.+|+|.|+|.|.|...
T Consensus 165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 229 (247)
T 2ghw_B 165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWP 229 (247)
T ss_dssp TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCC
Confidence 8999999 5543311000 000000011111 1135799999999999999999998643
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=175.89 Aligned_cols=171 Identities=19% Similarity=0.172 Sum_probs=131.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCCcEEEeecCCCCCEEEEEEEEec-
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLLMTSDDLAGRYYCKASVM- 613 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~- 613 (1011)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 83 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 83 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence 46778777777 8999999999999875 4568999999865431 24568999999999999999999883
Q ss_pred CCCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 614 GFPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
+....+..+.|.|.+ +|.|.......+.+|++++|.|.+.+. .+ .+.|+|+|..+.. .... ....
T Consensus 84 ~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~-~~~w~k~g~~~~~----~~~~------~~~~ 151 (242)
T 1p6f_A 84 LWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHV----QRGY------GKVQ 151 (242)
T ss_dssp EECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CS-EEEEEECSSSCEE----EEEE------CSSE
T ss_pred ccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CC-EEEEEECCCccCc----cccC------CCce
Confidence 223456778888864 677775555678999999999998754 35 8999999987652 1111 2235
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCC---CCeEEEEEEEecC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPY---GSDSVEIMLKPQK 727 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~---G~~~~~~~l~V~~ 727 (1011)
..|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+
T Consensus 152 ~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 152 AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp EEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred EEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 799999999999999999999974 2445667777754
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=175.64 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=129.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGD 89 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~ 89 (1011)
.++.|...+.++.+.+|++|+|.|.+.+ +.+.+.|+|....... .......+|+.+..+...+.
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 3577888899999999999999999987 4568999985311100 00112236888886666778
Q ss_pred eEEEEeecccCCCceEEEEEEeCCC--------CCcceeeeEEEEEEEcCCC-------------CCeeecCCeeeecCC
Q psy17146 90 YSLEIYPVMLDDDARYQCQVSTGIL--------GEPAIRSRFATLTVLVPPD-------------PPRIVQGDTLYTTED 148 (1011)
Q Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~--------~~~~~~s~~~~l~V~~~p~-------------~~~i~~~~~~~v~eg 148 (1011)
++|+|.+++.+|+|.|.|.+.+... .........+.|+|...+. +..+..+..+.+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 8999999999999999999987500 0122344557788877543 234445667889999
Q ss_pred CcEEEEEEccCCCCC-cEEEEEeC--Cceeee---ceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 149 REIELECISANGKPP-AEITWIDG--TGTVMS---NVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 149 ~~v~L~C~~~~g~P~-~~i~W~k~--~~~l~~---~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+.++|.|. +.+.|. +.+.|+|. +..+.. .... ......++... ...+|+|.+++.+|+|.|+|.|.|.
T Consensus 165 ~~v~L~C~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 242 (256)
T 3juy_B 165 ERATFSCR-SSHSIRSRRVAWYQHKPGQAPRLVIHGVSN-RASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGA 242 (256)
T ss_dssp SCEEEEEE-ESSCCTTCCEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred CCEEEEEE-ECCCcCCeeEEEEEECCCCCcEEEEEecCc-cCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence 99999999 556665 89999983 222110 0000 00001111111 1357999999999999999999985
Q ss_pred CC
Q psy17146 219 AD 220 (1011)
Q Consensus 219 ~g 220 (1011)
..
T Consensus 243 ~~ 244 (256)
T 3juy_B 243 SS 244 (256)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=167.01 Aligned_cols=153 Identities=13% Similarity=0.194 Sum_probs=121.7
Q ss_pred ceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--------------------------ccCCcEEEEeeccCCCeEE
Q psy17146 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------------------------GNSPNLTLLMTSDDLAGRY 452 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~--------------------------~~~~~L~I~~v~~~d~G~Y 452 (1011)
.+.+.+|+++.|.|.+.+.|.+.+.|+|++..... .....|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 45788999999999999999999999999853221 1134599999999999999
Q ss_pred EEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCC
Q psy17146 453 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532 (1011)
Q Consensus 453 ~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~ 532 (1011)
+|.+.|..+ .+.+.
T Consensus 84 ~C~~~~~~~-----~~~l~------------------------------------------------------------- 97 (184)
T 2ny1_B 84 ICEVEDQKE-----EVQLL------------------------------------------------------------- 97 (184)
T ss_dssp EEEETTEEE-----EEEEE-------------------------------------------------------------
T ss_pred EEEEEcCCC-----cEEEE-------------------------------------------------------------
Confidence 999985311 22222
Q ss_pred CcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 533 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 533 ~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.. +.. +....+.+|+.++|.|.+.+.|.+.+.|++++.... ...+.|.|.++..+|+|.|+|.|.|
T Consensus 98 --------V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n 164 (184)
T 2ny1_B 98 --------VFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQ 164 (184)
T ss_dssp --------EEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-EESSEEEESSCCGGGCEEEEEEEEE
T ss_pred --------EEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-cCceEEEEecCCcCCCeEEEEEEEE
Confidence 221 111 233467899999999999999999999999987663 4678999999999999999999999
Q ss_pred cCCCceeeEEEEEEcCCCe
Q psy17146 613 MGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~ 631 (1011)
..+..+..+.|.|.+.|.
T Consensus 165 -~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 165 -NQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp -TTEEEEEEEEEEEECCCC
T ss_pred -CCceEEEEEEEEEEecCC
Confidence 678888999999988764
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=164.89 Aligned_cols=154 Identities=16% Similarity=0.290 Sum_probs=121.7
Q ss_pred cccccCCcEEEEEEeecCCCc-cEEEEEECCeecCCCc---CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 313 NRLVEGTDVRLYCKAEANPSH-MKYRWYINDQPVPAAA---SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~-~~i~W~k~g~~l~~~~---~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
..+.+|+.++|.|.+.+.+.+ ..+.|+|+|..+.... ....|.|. ... |+|.|+|.|.| .....+.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~-d~G~Y~C~~~n---~~~~~~~l~V~ 81 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDD-QWGEYSCVFLP---EPMGTANIQLH 81 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGG-CCEEEEEEEES---TTSCEEEEEEC
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chh-hCeEEEEEEEC---CcCcEEEEEEe
Confidence 467899999999999987643 3899999999987642 23356555 444 99999999998 34577899999
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEe---CCCceee------------ccCCcEEEEeec-cCCCeE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH---EDSDKVV------------GNSPNLTLLMTS-DDLAGR 451 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k---~~~~~~~------------~~~~~L~I~~v~-~~d~G~ 451 (1011)
.+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++..... .....|.|.+++ .+|+|.
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~ 161 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCce
Confidence 999999888888899999999999999999 79999999 4432221 112379999999 999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEc
Q psy17146 452 YYCKASVMGFPEVGAEATVYLK 473 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~ 473 (1011)
|+|.|.|..+. ....+.|.|.
T Consensus 162 Y~C~a~N~~g~-~~~~~~l~V~ 182 (184)
T 3b5h_A 162 YRCNGTSSKGS-DQAIITLRVR 182 (184)
T ss_dssp EEEEEEETTEE-EEEEEEEEEC
T ss_pred EEEEEEeCCCc-ceEEEEEEEe
Confidence 99999996543 4445666664
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=173.75 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=125.3
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN 84 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence 35778899999999999999863 4689999973 22210 0 0001236888876544567899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+............+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+++|.| .|+|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 999999999999999853211112334567888763 3345543 23334567899999999944338998 99999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+...... ..... ..+...+.|.|.... .|.|.|+|.|.|..+..
T Consensus 165 ~~~~~~~~~--~~~~~-~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 165 LSSGVHTFP--AVLQS-DLYTLSSSVTVPSSP-RPSETVTCNVAHPASST 210 (219)
T ss_dssp BCTTEEECC--CEESS-SCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTE
T ss_pred cccceEecC--CcccC-CeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCc
Confidence 764221100 01112 334456789995444 46699999999988765
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=170.15 Aligned_cols=188 Identities=20% Similarity=0.261 Sum_probs=123.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------Cc---ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PH---RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~---~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+...|.++.+.+|++|+|.|....+.+.+.|+|+. ..+. .. ......+|+.+.. ...+.++|+|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCC
Confidence 56678999999999999999954477899999962 1110 00 0011235777765 33456789999999
Q ss_pred cCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCCC----------CeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 99 LDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPDP----------PRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~----------~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
.+|+|.|+|.+.+.... ........+.|.|...+.. .....+..+.+.+|+.+.|.|. +.+.|.+.+.
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~~~p~~~i~ 160 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS-YENSAFDYFP 160 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEE-CCCTTCCEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEE-EecCCCCcEE
Confidence 99999999999875321 0112234467888765430 1223355777899999999999 7788999999
Q ss_pred EEeCCc--ee--eeceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 168 WIDGTG--TV--MSNVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 168 W~k~~~--~l--~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
|+|++. .+ ............+++.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 999642 11 0000000000111222111 3689999999999999999999974
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=175.70 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=124.4
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c--------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H--------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~--------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS 84 (257)
T ss_dssp EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence 34567789999999999999873 5789999963 21100 0 00112368888766556788999999
Q ss_pred cccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEcCCC------------CCeee-cCCeeeecCCCcEEEEEEcc
Q psy17146 97 VMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLVPPD------------PPRIV-QGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~~p~------------~~~i~-~~~~~~v~eg~~v~L~C~~~ 158 (1011)
++.+|+|.|+|.+.+..+. .....+..+.|+|...+. ++.+. .+..+.+.+|+.++|.|. +
T Consensus 85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~ 163 (257)
T 1f3r_B 85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK-G 163 (257)
T ss_dssp CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE-C
T ss_pred CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE-E
Confidence 9999999999999885310 011223446788876541 22233 344677899999999999 7
Q ss_pred CCCCCcEEEEEe--CCceeee---ceeEEEeeecCCceE----EEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 159 NGKPPAEITWID--GTGTVMS---NVRVTEEASVDGRRT----TVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 159 ~g~P~~~i~W~k--~~~~l~~---~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.|.+.+.|+| ++..+.. .... .......+.. ....+|+|.+++.+|+|.|+|.|.|..
T Consensus 164 ~~~~~~~v~W~k~~~g~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 164 SQNINNYLAWYQQKLGEAPKLLIYNTNS-LQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp SSCCBTCEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCcCCCcEEEEEECCCCCcEEEEEEccC-CCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 788888999999 5543311 0000 0000011111 113589999999999999999999864
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=165.60 Aligned_cols=164 Identities=20% Similarity=0.309 Sum_probs=116.0
Q ss_pred ecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCccc---------C---CCCcceEEeecCCCceeEEEEeec
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRN---------L---SGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~---------~---~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
..|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..+..... . ...+|+.+. .+++|+|.++
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v 77 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLSNL 77 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEECSC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-----CCeEEEECCC
Confidence 4577899999999999999975 3358999999765421100 0 011466664 2458999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC-cEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR-EIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~-~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
+.+|+|.|+|.+.+... .....+.|.|..++..|.+..... ....|. .+.|.|.+.++.|.++++|+|++..+.
T Consensus 78 ~~~D~G~Y~C~~~~~~~----~~~~~~~L~V~~~~~~p~i~~~~~-~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~ 152 (193)
T 2if7_A 78 KMEDTGSYRAQISTKTS----AKLSSYTLRILRQLRNIQVTNHSQ-LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS 152 (193)
T ss_dssp CGGGCEEEEEEEECSSC----EEEEEEEEEEECCCEEEEEEECCC----CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred CcccCceEEEEEEecCC----CeEEEEEEEEEccCCCCeEecCce-eecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence 99999999999988542 234578899988776666654432 233455 899999954445689999999876542
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
. . ..|.|.....+ |.|.|+|.|.|..|..
T Consensus 153 ~----------~-------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~ 182 (193)
T 2if7_A 153 S----------Q-------PNLTVSWDPRISSEQDYTCIAENAVSNL 182 (193)
T ss_dssp S----------S-------SEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred C----------C-------CeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence 2 1 24666554554 8999999999998865
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=178.21 Aligned_cols=175 Identities=18% Similarity=0.276 Sum_probs=124.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEe---cCCCCeEEEEecCCce------------------------ee-----cCCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDK------------------------VV-----GNSPN 592 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~---g~p~p~v~W~k~~~~~------------------------~~-----~~~~~ 592 (1011)
+.+...+..+.+.+|++++|.|.+. +.+.+.+.|+|++... .. ..+++
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4566777889999999999999998 7788899999976421 00 12378
Q ss_pred EEEeecCCCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEE---EecCCCCeEEEEEC-C
Q psy17146 593 LTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSA---FSIPPPEKVTWSYR-G 667 (1011)
Q Consensus 593 L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~---~g~p~p~~v~W~~~-g 667 (1011)
|.|.+++.+|+|.|+|.|.|. +....+..+.|.|.. ..+....+.+|+.++|.|.+ .+.|.| .++|+++ +
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~~~~~ 160 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVT-KVNWMFSSG 160 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC----CCCSEEEEETTCCEEECCBCEESSSSCCC-EEEEEEECT
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec----cCCCccccccCCcEEEEEEecCCCCCCcc-ceEEEecCC
Confidence 999999999999999999984 223345566666641 13346678999999999999 566888 9999994 3
Q ss_pred eEecc---------------cCC----CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 668 EEIGV---------------GSS----DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 668 ~~l~~---------------~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.. ... .++.+..+ .....+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD--ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSC--GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCcceeEEEecCCCCccccccccccccceEeecc--CCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 21110 001 12222111 01235799999999999999999999999999999999884
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=168.20 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=128.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc---------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (223)
T 1dee_B 6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS 85 (223)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence 4578899999999999999874 36899998642 110 00 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe-
Q psy17146 97 VMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID- 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k- 170 (1011)
++.+|+|.|+|.+.+.... ........+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 9999999999999875310 011223346788874 344555542 2222356899999999955555877 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccC--cCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE--HHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+.. .........+ ..+...+.|.|..... +|.|.|+|.|.|..+..
T Consensus 166 ~g~~l~~-~~~~~~~~~~-~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 166 NNSDISS-TRGFPSVLRG-GKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp TSCBCSC-EEECCCEEET-TEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCCccce-eEECCccccC-CeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 7776644 1110011112 3555667899988876 88999999999998865
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=174.23 Aligned_cols=193 Identities=19% Similarity=0.204 Sum_probs=123.4
Q ss_pred ecCCceeEEecCcEEEEEEEcC-CCC-----eeEEeeCCeecCCcc-----------cCCCCcceEEeecCCCceeEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID-KTG-----VLQWTKDDFALGPHR-----------NLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~-~~~-----~v~W~k~~~~l~~~~-----------~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
..|..+.+.+|++|+|.|.+.+ +.+ .+.|+|++....... .+....++.. .....+.++|.|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sL~I 86 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSP-WRLKSGDASLRL 86 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCH-HHHTTTBCCEEE
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEe-ccCCCCcEEEEe
Confidence 4567789999999999999975 333 499999753321100 0011111110 011235668999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
.+++.+|+|.|+|.+.+.. ...+..+.|.|..+|. +...+...+.+|+.+.|.|.+.+++|.+ .++|+|+++
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~----~~~~~~~~L~V~~~P~---v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~ 159 (248)
T 3pv7_A 87 PGIQLEEAGEYRCEVVVTP----LKAQGTVQLEVVASPA---SRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQ 159 (248)
T ss_dssp SSCCGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCE---EEEECC--------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred CCCCHHHCeEEEEEEEeCC----ccceeEEEEEEecCCc---eEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence 9999999999999998853 3456678888887553 3222223345678888999955448998 999999987
Q ss_pred eeeec------eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 174 TVMSN------VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 174 ~l~~~------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.+... .............+...+.|.|.....+|.|.|+|.|.|..+....+..+.|.|
T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 55322 111111222334556678899999999999999999999998876777888877
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=171.52 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc-------------------------eee-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD-------------------------KVV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~-------------------------~~~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+.| .+.+.|+|++.. ... ....+|+|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 89 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence 457899999999999999987 678999985311 111 112479999999
Q ss_pred CCCCEEEEEEEEec-CCCceeeEEEEEEcCC---------------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEE
Q psy17146 600 DDLAGRYYCKASVM-GFPEVGAEATVYLKGR---------------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVT 662 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~---------------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~ 662 (1011)
.+|+|.|+|.|.|. ........+.|.|..+ |.+. .+....+.+|++++|.|.+.+.|.+ .+.
T Consensus 90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~ 168 (247)
T 2ghw_B 90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS-NLA 168 (247)
T ss_dssp GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT-CEE
T ss_pred HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc-eEE
Confidence 99999999999994 1222344567888754 3344 3456678999999999999999998 999
Q ss_pred EEE--CCeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEe
Q psy17146 663 WSY--RGEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 663 W~~--~g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 725 (1011)
|+| +|..+. .....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..+.. .....|.|
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V 240 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSG----SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV 240 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEEC----SSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEec----CCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence 999 555431 11234555532 2345789999999999999999999965432 22335555
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=174.49 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=131.4
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC-----------CcccCCCCcceEEeecCCCceeEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG-----------PHRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~-----------~~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+..+|.++.+.+|++|+|.|.+.+. .+.+.|+|.. ..+. ........+|+.+..+...+.++|
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 35677889999999999999999873 5689999932 1110 000111236888887666778899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC------------CCCCeee-cCCeeeecCCCcEEEEEEccC
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP------------PDPPRIV-QGDTLYTTEDREIELECISAN 159 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~------------p~~~~i~-~~~~~~v~eg~~v~L~C~~~~ 159 (1011)
+|.+++.+|+|.|+|.+.+... ......+.|.|... ..++.+. .+..+.+.+|+++.|.|. +.
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~ 158 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGF---AYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCR-AS 158 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSC---CEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEE-ES
T ss_pred EeCCCCcccCEEEEEEEeeCCc---cEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEE-ec
Confidence 9999999999999999987432 22344577777752 1123333 445688999999999999 66
Q ss_pred CCCCc----EEEEEeCC--ceee---eceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE
Q psy17146 160 GKPPA----EITWIDGT--GTVM---SNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 160 g~P~~----~i~W~k~~--~~l~---~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
+.|.+ .+.|+|++ ..+. ..... ......++... ...+|+|.+++.+|+|.|+|.|.|..+.. ...
T Consensus 159 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~-fg~ 236 (253)
T 3uzq_A 159 ENVDRYGNSFMHWYQQKAGQPPKLLIYRASN-LESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWT-FGG 236 (253)
T ss_dssp SCCEETTEECEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCC-BCC
T ss_pred CccccCCCcEEEEEEECCCCCCEEEEEEccc-cCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcE-ECC
Confidence 77776 89999842 2211 00000 00001112111 12479999999999999999999865433 233
Q ss_pred EEEEEEEeCC
Q psy17146 227 RLKLLVKYAP 236 (1011)
Q Consensus 227 ~v~v~v~~~P 236 (1011)
-..|.|...+
T Consensus 237 gt~l~v~~~~ 246 (253)
T 3uzq_A 237 GTKLEIKRPL 246 (253)
T ss_dssp CEEEEECCC-
T ss_pred CEEEEEcCCC
Confidence 3455555443
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=170.58 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=128.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC---------------cccCCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP---------------HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~---------------~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+...... .......+|+.+..+...+.++|+|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 4667899999999999999863 568999986421100 0001123688887765567889999
Q ss_pred eecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 95 YPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
.+++.+|+|.|+|.+.+.... ........+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++|++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 165 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 165 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence 999999999999999875321 0001223467788753 2345443 23233456899999999954445988 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
++..+... .... ...++ .+...+.|.|.++..+| |.|+|.|.|..|...
T Consensus 166 ~g~~~~~~-~~~~-~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~ 214 (222)
T 1q9r_B 166 GSLSSGVH-TFPA-VLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 214 (222)
T ss_dssp GTBCTTEE-EEEE-EEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred CCeEcceE-eccc-cccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence 98765322 1111 11233 55666789999999999 999999999988653
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=173.10 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC-----------cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP-----------HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~-----------~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++..+.+.+|++|+|.|.+.+. .+.+.|+|... .+.. .......+|+.+..+...+.++|+|.
T Consensus 7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 86 (256)
T 3umt_A 7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR 86 (256)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence 34566889999999999999873 46899998531 1100 00111236888876655677889999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-------------CCCeee-cCCeeeecCCCcEEEEEEccCCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-------------DPPRIV-QGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-------------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
+++.+|+|.|+|.+.+............+.|+|...+ .++.+. .+..+.+.+|+.++|.|. +.+.
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~~ 165 (256)
T 3umt_A 87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR-ASQD 165 (256)
T ss_dssp SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE-ESSC
T ss_pred CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE-EecC
Confidence 9999999999999987522112334455778887531 133443 445688999999999999 6678
Q ss_pred CCcEEEEEeCC--ceee---eceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 162 PPAEITWIDGT--GTVM---SNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 162 P~~~i~W~k~~--~~l~---~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
|.+.+.|+|+. ..+. ..... ......+|... ...+|+|.+++.+|+|.|+|.|.+.... .......|.|
T Consensus 166 ~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~-~fg~gt~L~V 243 (256)
T 3umt_A 166 IGSNLNWLQQKPDGTIKRLIYATSS-LDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPP-TFGGGTKLEI 243 (256)
T ss_dssp CTTCEEEEEECTTCCEEEEEETTTE-ECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSC-EECCCEEEEE
T ss_pred CCcEEEEEEECCCCCcEEEEEeccc-cCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCc-EECCCEEEEE
Confidence 88899999842 2211 00000 00001112111 1247999999999999999999986432 2334456666
Q ss_pred EeCC
Q psy17146 233 KYAP 236 (1011)
Q Consensus 233 ~~~P 236 (1011)
...+
T Consensus 244 ~~~~ 247 (256)
T 3umt_A 244 KRAA 247 (256)
T ss_dssp C---
T ss_pred ECCC
Confidence 5444
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=182.29 Aligned_cols=195 Identities=20% Similarity=0.240 Sum_probs=133.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecCC------c---ccCCC-CcceEEeecCCCceeEE
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALGP------H---RNLSG-FDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~~------~---~~~~~-~~r~~i~~~~~~~~~~L 92 (1011)
...+.+...|..+.+.+|++|+|.|.+..+.+.+.|+|.. ..... . ..... .+|+.+..+ ..+.++|
T Consensus 24 ~~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL 102 (268)
T 3pl6_D 24 GGGAGVSQTPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL 102 (268)
T ss_dssp ---SSCBCCCSEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred ccCceeEeCCCEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence 3456788889999999999999999998777899999932 21100 0 00001 168887764 4567899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EI 166 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i 166 (1011)
+|.+++.+|+|.|+|.+.+... .......+.|.|.. ...+|.+. .+....+.+|+.+.|.|.+.+..|++ .+
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v 180 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGD--TQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 180 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSS--SCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred EECCCCcccCEEEEEEEecCCC--ceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence 9999999999999999987321 12344556788876 22234332 33344566799999999954445545 89
Q ss_pred EEEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 167 TWIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 167 ~W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+|+|++..+..+...... .......+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence 999999888654332110 01123355666789999988887 999999999986544
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=167.38 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=122.3
Q ss_pred CceEEEcCCCcEEEEEEEecCCCCe---EEEEecCCceee--------------------------------cCCCcEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAPE---ITWIHEDSDKVV--------------------------------GNSPNLTL 595 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p~---v~W~k~~~~~~~--------------------------------~~~~~L~I 595 (1011)
|.++.+..|++++|.|.+.+.+.+. |.|+|++..... ..+++|+|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 4457788999999999999988774 899998754321 12367999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.|...........+.+..+|.+. .+.......++.+.+.|.+. +.|++ .+.|++++..+...
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~-~~~w~~~~~~~~~~ 166 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPA-RITWISSLGGEAKD 166 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCC-EEEEECSSCCEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCC-EEEEEECCccccCC
Confidence 99999999999999998545555666677777777665 33445566777888887765 45666 89999987665421
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE--EEEEe
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE--IMLKP 725 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~V 725 (1011)
.......+ ......+.|.|.++..+|.|.|+|.|+|..|..... ++|.|
T Consensus 167 --~~~~~~~~-~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 167 --TQEPGIQA-GTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp --EEEECSST-TCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred --cceEEecC-CCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence 11111110 001124689999999999999999999999976554 44444
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=170.28 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=132.7
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecC--Ccc--------cCC-CCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALG--PHR--------NLS-GFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~--~~~--------~~~-~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...|..+.+.+|++|+|.|.+.+ +...+.|+|+.. .+. .+. ... ..+|+.+..+...+.++
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 45677889999999999999999987 356899998642 110 000 001 34788887655557889
Q ss_pred EEEeecccCCCceEEEEEEeCCCCC---cceeeeEEEEEEEcCCC------CCeeecCCeeeecCCCcEEEEEEccCCCC
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGE---PAIRSRFATLTVLVPPD------PPRIVQGDTLYTTEDREIELECISANGKP 162 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~---~~~~s~~~~l~V~~~p~------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P 162 (1011)
|+|.+++.+|+|.|.|.+.+...+. .......+.|+|...+. .+.+..+....+.+|+.+.|.|.+.+..|
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P 161 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP 161 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence 9999999999999999998753111 11223457888887432 22333333345668999999999554457
Q ss_pred C-cEEEEEeCCc-eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 163 P-AEITWIDGTG-TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 163 ~-~~i~W~k~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
. +.++|+|++. .+....... ....++ .+...+.|.|.+... | |.|+|.|.|..+....+..+
T Consensus 162 ~~~~v~W~~~~~~~l~~~~~~~-~~~~~~-~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~ 225 (242)
T 1hxm_B 162 DVIKIHWEEKKSNTILGSQEGN-TMKTND-TYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEI 225 (242)
T ss_dssp CCEEEEEEESSSCCCCCCEECC-CEECSS-SEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEE
T ss_pred CCeEEEEEcCCCEeecCccccc-eecCCC-cEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEe
Confidence 5 7999999987 453321111 112233 455667899988765 5 99999999998876444443
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=174.55 Aligned_cols=188 Identities=16% Similarity=0.276 Sum_probs=123.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc-------------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH-------------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~-------------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. ...+.|+|....-... ......+|+.+..+...+.++|+|.
T Consensus 28 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 107 (256)
T 3sob_H 28 VESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN 107 (256)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence 34456889999999999999752 3479999853211000 0112236888887766788899999
Q ss_pred ecccCCCceEEEEEEeCCC-------CCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcE
Q psy17146 96 PVMLDDDARYQCQVSTGIL-------GEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAE 165 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~-------~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~ 165 (1011)
+++.+|+|.|.|.+.+... .........+.|+|.. ...+|.+. ..+...+.+|+.+.|.|.+....| .+.
T Consensus 108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~ 187 (256)
T 3sob_H 108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 187 (256)
T ss_dssp SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCE
T ss_pred CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeE
Confidence 9999999999999986420 0112234456788863 33445554 334445678999999999665567 568
Q ss_pred EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.| ++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 188 v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~ 241 (256)
T 3sob_H 188 VSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 241 (256)
T ss_dssp EEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred EEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCc
Confidence 999 4444433222111122233456667899999999999 99999999987755
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=170.91 Aligned_cols=171 Identities=15% Similarity=0.264 Sum_probs=120.2
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Ccee-----------------------e-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDKV-----------------------V-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~~-----------------------~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ .... . ....+|+|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 35567899999999999999876 6899999973 2211 0 1235899999
Q ss_pred cCCCCCEEEEEEEEecCC-C--ceeeEEEEEEcCC----Ceee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCe
Q psy17146 598 TSDDLAGRYYCKASVMGF-P--EVGAEATVYLKGR----PTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGE 668 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~-~--~~s~~~~l~V~~~----P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~ 668 (1011)
++.+|+|.|+|.|.|... + .....+.|.|... |.+. .++...+..|+.++|.|.+.| .|.|..|+|+++|.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 165 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence 999999999999999421 1 2334567777653 6665 333445678999999999999 78877899999998
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.+........ ... ......+.|.|.... .|.|.|+|.|.|..|.......|.
T Consensus 166 ~~~~~~~~~~--~~~-~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 166 SSGVHTFPAV--LQS-DLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp CTTEEECCCE--ESS-SCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEECC
T ss_pred ccceEecCCc--ccC-CeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEecC
Confidence 7532111111 110 001124689995544 466999999999999877666654
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=172.83 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=128.3
Q ss_pred eecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
...|.++.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL 83 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence 346778999999999999999874 4689999953 22100 0 000123688887665567789999
Q ss_pred eecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-----EEEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-----EITW 168 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-----~i~W 168 (1011)
.+++.+|+|.|+|.+.+..+. ........+.|+|...+ .....+..+.+.+|+.++|.|. +.+.|.+ .+.|
T Consensus 84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~--~v~~~p~~~~v~~G~~v~L~C~-~~~~~~~~~~~~~v~W 160 (256)
T 1nqb_A 84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI--ELTQTPLSLPVSLGDQASISCR-SSQSIVHSNGNTYLEW 160 (256)
T ss_dssp CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC--CEEEECSEEEECTTCCEEEEEE-ESSCCBCTTSCBCEEE
T ss_pred CcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc--cEEecCcEEEEecCCcEEEEeE-ecCcccccccceEEEE
Confidence 999999999999999885321 01122344667776432 2334455778899999999999 6677764 9999
Q ss_pred Ee--CCceeeece--eEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 169 ID--GTGTVMSNV--RVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 169 ~k--~~~~l~~~~--~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
+| ++..+..-. ..........+... ...+|.|.+++.+|+|.|+|.|.+..... ......|.|.
T Consensus 161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~-fg~gt~l~V~ 232 (256)
T 1nqb_A 161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYT-FGGGTKLEIK 232 (256)
T ss_dssp EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCE-ECCCEEEEEC
T ss_pred EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceE-ECCCEEEEEE
Confidence 99 555431100 00000000111111 13579999999999999999999854322 2233445554
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=177.41 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=121.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--cee---------------------ecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DKV---------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~~---------------------~~~~~~L~I~~v~~~d~ 603 (1011)
+.. |..+.+.+|++++|.|.+.+.|.+.+.|+|++. ... .....+|+|.+++.+|+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 81 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE 81 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence 344 778899999999999999999888999998642 110 01234799999999999
Q ss_pred EEEEEEEEec-CC-CceeeEEEEEE----cCCCeeec-CCceeeecCCcEEEEEEEEec-CC-CCeEEEEECCeEecccC
Q psy17146 604 GRYYCKASVM-GF-PEVGAEATVYL----KGRPTIIS-HRTQFGIPGDTARVECSAFSI-PP-PEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 604 G~Y~C~a~n~-~~-~~~s~~~~l~V----~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~-p~~v~W~~~g~~l~~~~ 674 (1011)
|.|+|.|.|. .. ........|.| ..+|.+.. +....+.+|+.++|.|.+.|. |. + .|+|+|+|+.+....
T Consensus 82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~-~v~W~k~g~~~~~~~ 160 (212)
T 1nfd_E 82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSA-TVTWKANGATINDGV 160 (212)
T ss_dssp SEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCC-EEEEEETTEEECSSC
T ss_pred EEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCcc-EEEEEECCeEcCCCe
Confidence 9999999972 11 11233455666 35677764 334445689999999999998 55 6 999999999987431
Q ss_pred CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
.. .....+.......+.|.|.++..+|+|.|+|.|.|..+..+.
T Consensus 161 ~~-~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 161 KT-TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp BC-CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred ec-CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 11 111111000112367999999999999999999999887443
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=168.86 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=126.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|... .+. .. ......+|+.+..+...+.++|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 4677899999999999999863 46899998642 110 00 000123688887765567889999999
Q ss_pred ccCCCceEEEEEEeCCC--CCcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCC-CcEEEEEEccCCCCCc-EEEEEe-
Q psy17146 98 MLDDDARYQCQVSTGIL--GEPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTED-REIELECISANGKPPA-EITWID- 170 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~--~~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg-~~v~L~C~~~~g~P~~-~i~W~k- 170 (1011)
+.+|+|.|.|.+.+... .........+.|+|.. ++.+|.+.. .+...+.+| +.+.|.|.+.+.+|.+ .++|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~ 165 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK 165 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence 99999999999984211 1011223446888876 344555542 122234468 9999999965556876 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccC--cCCcEEEEEEEeCCCCceeEEEE
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE--HHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
++..+.. .........+ ..+...+.|.|.+... +|.|.|+|.|.|..+.......+
T Consensus 166 ~g~~l~~-~~~~~~~~~~-~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i 223 (232)
T 1dn0_B 166 NNSDISS-TRGFPSVLRG-GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPL 223 (232)
T ss_dssp TSCEECC-EEECCCEEET-TEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEEC
T ss_pred CCCceee-EEECCccccC-CcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEec
Confidence 7776644 1110011112 3555668899998887 89999999999998865433333
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=174.26 Aligned_cols=180 Identities=19% Similarity=0.324 Sum_probs=127.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++.. .. .....+|+|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 34566678889999999999999999999999999995311 11 11345799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEE---cCCCeeec-CCceeeecCCcEEEEEEEEecCC--CCeEEEEECCeEecccC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYL---KGRPTIIS-HRTQFGIPGDTARVECSAFSIPP--PEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V---~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~g~~l~~~~ 674 (1011)
+|+|.|+|.|.|.........+.|.| ..+|.+.. +....+..|+.++|.|.+.|.++ + .|+|+|+|..+..+.
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~-~v~W~k~g~~~~~~~ 182 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREA-KVQWKVDNALQSGNS 182 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCC-EEEEEETTEECCSSE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCce-EEEEEECCCCCCCce
Confidence 99999999998843223344456666 45677653 34444556899999999998543 6 999999999886321
Q ss_pred CCCeEEec-CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 675 SDDYSVLE-DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 675 ~~~~~~~~-~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
........ ........+.|.|.....+|.|.|+|.|+|..........+.
T Consensus 183 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~ 233 (237)
T 3sob_L 183 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 233 (237)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred eecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence 00001110 000011246799999999999999999999987665555443
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=174.62 Aligned_cols=168 Identities=17% Similarity=0.341 Sum_probs=122.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----ee----------------e---cCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----KV----------------V---GNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----~~----------------~---~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. .. . ....+|+|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 45677778899999999999999999999999999997531 11 0 1123799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEcCCCe---------------eecCCceeeecCCcEEEEEEEEecCC--CCeEEE
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLKGRPT---------------IISHRTQFGIPGDTARVECSAFSIPP--PEKVTW 663 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~---------------i~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W 663 (1011)
+|+|.|+|.|.|.........+.|.|..+|. +..+....+.+|++++|.|.+.|.|. + .+.|
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W 170 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDY-WIHW 170 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS-EEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCC-EEEE
Confidence 9999999999984222234456777766532 33456778899999999999998873 6 8999
Q ss_pred EECC--eEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 664 SYRG--EEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 664 ~~~g--~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+|++ ..+. .....++.+..+. ......|.|.+++.+|+|.|+|.|.|..
T Consensus 171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADT--SKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecC--CCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 9963 2210 1123566655421 1234689999999999999999999983
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=166.75 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=129.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ec---CCc--------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--AL---GPH--------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l---~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+ ... ......+|+.+..+...+.++|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 4567899999999999999863 46899998642 11 000 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~ 173 (1011)
++.+|+|.|.|.+.+.... .......+.|+|...+ .+|.+...+...+.+|+.+.|.|.+.+..|. +.++|+|++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~ 164 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGY-NAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK 164 (220)
T ss_dssp CCGGGCEEEEEEEEETTTE-EEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred CChhhCEEEEEEEeccccc-cceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence 9999999999999885321 0012334678887643 3455543223446789999999995544586 7999999987
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+... ........+ ..+...+.|.|.+...+|.|.|+|.|.|..+..
T Consensus 165 ~~~~~-~~~~~~~~~-g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 165 DITTV-NFPPALASG-GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SCEEE-ECCCEECSS-SCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred ecceE-ecCceECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 75211 111111122 345556789999999999999999999998865
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=171.02 Aligned_cols=170 Identities=15% Similarity=0.255 Sum_probs=121.9
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--c--ee-------------------ecCCCcEEEeecCCCC
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--D--KV-------------------VGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~--~~-------------------~~~~~~L~I~~v~~~d 602 (1011)
.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+.. . .. .....+|+|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 45567788999999999999999999999999999642 1 00 0123479999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCCCe--------------eecCCceeeecCCcEEEEEEEEecC--CCCeEEEEEC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGRPT--------------IISHRTQFGIPGDTARVECSAFSIP--PPEKVTWSYR 666 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~--------------i~~~~~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~ 666 (1011)
+|.|+|.|.|.........+.|.|..+|. +..+....+.+|++++|.|.+.|.| .+ .+.|+|+
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~k~ 161 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSD-YXSXIRK 161 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGS-CEEEEEE
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCc-ceeeEee
Confidence 99999999984222234456788877652 3344455689999999999999987 36 8999995
Q ss_pred --CeEec---c-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC--CCCeE
Q psy17146 667 --GEEIG---V-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP--YGSDS 718 (1011)
Q Consensus 667 --g~~l~---~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~--~G~~~ 718 (1011)
+..+. . ....++.+..+ ..+...+|.|.+++.+|+|.|+|.|.|. +|..+
T Consensus 162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD--TSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCCE
T ss_pred CCCCCcEEEEEEecCCccccCccccCcEEEEec--CCCCEEEEEECCCCcCcCEEEEEeccCCcccCCCe
Confidence 33221 0 01345655432 1234579999999999999999999994 45543
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=171.32 Aligned_cols=179 Identities=22% Similarity=0.302 Sum_probs=129.7
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCC---c----ccCCCCcceE----------EeecCCCceeEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGP---H----RNLSGFDRYA----------MIGSDEEGDYSL 92 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~---~----~~~~~~~r~~----------i~~~~~~~~~~L 92 (1011)
..|.++.+.+|++++|.|.+.+.. +.+.|+|++..... . ......+|+. +..+ ..|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~L 79 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-----GRL 79 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-----CCE
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-----ceE
Confidence 357889999999999999999854 68999987643210 0 0000012333 3322 249
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecC-CeeeecCCCcE-EEEEEccCCCCCcEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREI-ELECISANGKPPAEITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~-~~~~v~eg~~v-~L~C~~~~g~P~~~i~W~k 170 (1011)
.|.+++.+|+|.|+|.+.+... +..+..+.|.|..+|..+.+... ..+.+.+|+.+ .|.|.+..++|.+.++|+|
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~ 156 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAA---GTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR 156 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGG---CEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred EEcccCcccCceEEEEEEecCC---CceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence 9999999999999999988642 34677889999999888777654 35567789988 9999944899999999999
Q ss_pred CCceeeece----eEEEe---eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 171 GTGTVMSNV----RVTEE---ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 171 ~~~~l~~~~----~~~~~---~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
++..+.... ++... .......+...+.|.|.....+|.|.|+|.|.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 998876543 22211 1123334555578999877777899999999995
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=167.32 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=118.8
Q ss_pred CceEEEcCCCcEEEEEEE-ecCC-CCeEEEEecCC--ce------------------ee---cCCCcEEEeecCCCCCEE
Q psy17146 551 PYSVQVDRGAGVNLLCDV-DGNP-APEITWIHEDS--DK------------------VV---GNSPNLTLLMTSDDLAGR 605 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~-~g~p-~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~~d~G~ 605 (1011)
|..+.+.+|++++|.|.+ .+.+ .+.+.|+|++. .. .. ....+|+|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 778899999999999995 4443 57999999642 11 01 123479999999999999
Q ss_pred EEEEEEecCC-CceeeEEEEEEc---CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeE
Q psy17146 606 YYCKASVMGF-PEVGAEATVYLK---GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYS 679 (1011)
Q Consensus 606 Y~C~a~n~~~-~~~s~~~~l~V~---~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~ 679 (1011)
|+|.|.|... ......+.|.|. .+|.+.. +.......|+.++|.|.+.|. |.|..|+|+|+|+.+..+......
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 9999999422 123344567775 4677663 333233469999999999985 554589999999988632000011
Q ss_pred EecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 680 VLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 680 ~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...+ .++ ..+.|.|..+..+|.|.|+|.|.|..........+
T Consensus 167 ~~~~--~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 167 EQDS--KDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp CCCT--TTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred cccC--CCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 1110 111 24589999999999999999999998765544444
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=176.71 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=133.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccC--C---------CCc-ceEEeecCCCceeEEE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNL--S---------GFD-RYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~--~---------~~~-r~~i~~~~~~~~~~L~ 93 (1011)
....+...|..+.+.+|++|+|.|.+..+.+.+.|+|..........+ . ..+ |+.+... ..+.++|+
T Consensus 26 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~ 104 (270)
T 3qib_D 26 GGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLE 104 (270)
T ss_dssp --CCCEEECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEE
Confidence 346788889999999999999999998877899999843111000000 0 001 7777653 45678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EIT 167 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~ 167 (1011)
|.+++.+|+|.|+|.+.+............+.|+|... ..+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++
T Consensus 105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~ 184 (270)
T 3qib_D 105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 184 (270)
T ss_dssp ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEE
Confidence 99999999999999998643222233445577888862 2234332 23333455699999999955447776 899
Q ss_pred EEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+..+...... .......+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 185 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 185 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence 99998887654332100 11123355666889999998888 999999999986654
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=168.97 Aligned_cols=184 Identities=17% Similarity=0.246 Sum_probs=122.3
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
..+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|+..... ........+|+.+... .+.++|+|.+++
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~ 82 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS--GTDYSLTISNLE 82 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCC
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC--CCEEEEEEccCC
Confidence 45677889999999999999999997 566999999642110 0111122357765433 466799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-----------------CCCeeecCCeeeecCCCcEEEEEEccCCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-----------------DPPRIVQGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-----------------~~~~i~~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
.+|+|.|+|.+.+.... .....+.|.|..++ .++.+..++.+.+.+|+.+.|.|. +.+.
T Consensus 83 ~~D~G~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~ 158 (250)
T 3esu_F 83 QEDIGTYFCQQGNTLPW---TFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK-DSGY 158 (250)
T ss_dssp GGGCEEEEEEECSSSSC---EECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE-CCST
T ss_pred hhhCEEEEEEEeeCCCc---eECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE-ecCC
Confidence 99999999999875322 23344567776541 233455566778899999999999 6676
Q ss_pred C--CcEEEEEeC--CceeeeceeE-------EEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEe
Q psy17146 162 P--PAEITWIDG--TGTVMSNVRV-------TEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 162 P--~~~i~W~k~--~~~l~~~~~~-------~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
| .+.+.|+|+ +..+..-..+ .......+|.... ..+|.|.+++.+|+|.|+|.|.+
T Consensus 159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 6 789999997 4333111000 0001111222111 23799999999999999999997
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=171.79 Aligned_cols=173 Identities=19% Similarity=0.267 Sum_probs=126.4
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------ee-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VV-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.| .+.+.|+|++. .. .. ....+|+|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (256)
T 1nqb_A 6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS 85 (256)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence 45678899999999999999886 67999999531 11 01 1124799999
Q ss_pred cCCCCCEEEEEEEEecCC----CceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCC----CeEEEEE--C
Q psy17146 598 TSDDLAGRYYCKASVMGF----PEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPP----EKVTWSY--R 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p----~~v~W~~--~ 666 (1011)
++.+|+|.|+|.|.|... ......+.|.|..+|.+. .+....+.+|++++|.|.+.+.|.+ ..+.|+| +
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~ 165 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP 165 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECC
Confidence 999999999999998411 123345788898888776 4566779999999999999998864 3899999 6
Q ss_pred CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 667 GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 667 g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
|..+.. ....++.+.. .....+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 166 g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 166 GQSPKLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp TSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEeCCCCCccCCcEEEEc----cCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 654421 1134555432 2345789999999999999999999964421 223455553
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=172.87 Aligned_cols=176 Identities=19% Similarity=0.323 Sum_probs=123.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~I 595 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . .. ....+|+|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 44566668889999999999999999998 689999997521 0 00 12238999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
.+++.+|+|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|+|+|+|+.+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999984222233345677754 576653 333334579999999999985 444479999999988
Q ss_pred cccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 671 GVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
............ ..++ ..+.|.|.++..+|.|.|+|.|.|.........
T Consensus 194 ~~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~~ 245 (252)
T 3bkj_L 194 QNGVLNSWTDQD--SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 245 (252)
T ss_dssp CSSEEEEECCCC--TTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred CCCeeeecCccc--CCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCeeE
Confidence 632000000100 0111 246799999999999999999999887654333
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=172.81 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=128.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecCC----------cccCCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALGP----------HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~~----------~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
...+|.++.+.+|++|+|.|.+.+ +.+.+.|+|... .... .......+|+.+..+...+.++|+|
T Consensus 11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 445678889999999999999987 356899999431 1100 0011223688887665567789999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-----------CCCeee-cCCeeeecCCCcEEEEEEccCCCC
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-----------DPPRIV-QGDTLYTTEDREIELECISANGKP 162 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-----------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P 162 (1011)
.+++.+|+|.|+|.+.+.........+..+.|.|..++ ..+.+. .+..+.+.+|+.+.|.|. +.+.|
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~~~ 169 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS-ASSSV 169 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE-ESSCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE-EccCc
Confidence 99999999999999988522222334455778887651 233444 345688999999999999 56677
Q ss_pred Cc-EEEEEeC--Cceeee---ceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 163 PA-EITWIDG--TGTVMS---NVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 163 ~~-~i~W~k~--~~~l~~---~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.+ .+.|+|+ +..+.. .... ......++... ...+|.|.+++.+|+|.|+|.|.+..... ...-.+|.|
T Consensus 170 ~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-fg~gt~l~v 247 (257)
T 3gkz_A 170 SSSHLYWYQQKPGSSPKLWIYSTSN-LASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT-FGSGTKLEI 247 (257)
T ss_dssp CGGGEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCE-ECCCEEEEE
T ss_pred cceEEEEEEECCCCCcEEEEEEccc-cCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceE-EcCCEEEEE
Confidence 76 9999984 222211 0000 00000112111 12479999999999999999998754322 222334555
Q ss_pred Ee
Q psy17146 233 KY 234 (1011)
Q Consensus 233 ~~ 234 (1011)
..
T Consensus 248 ~~ 249 (257)
T 3gkz_A 248 KR 249 (257)
T ss_dssp CC
T ss_pred Ee
Confidence 43
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=172.76 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=131.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC----------C---cccCCCCcceEEeecCCCceeEEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG----------P---HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~----------~---~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|....-. . ...-...+|+.+..+. .+.++|+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-LTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE-TTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC-CCEEEEEE
Confidence 4677889999999999999999987 566899999321100 0 0001112688777542 46789999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-c-EEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPP-A-EIT 167 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~-~i~ 167 (1011)
.+++.+|+|.|+|.+.+............+.|.|.. ...+|.+. .+....+.+|+.+.|.|. +.+.|+ + .++
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~-~~g~~p~~~~v~ 160 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCL-ATGFYPDHVELS 160 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEE-EEEEBSSCEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEE-EccCcCCceEEE
Confidence 999999999999999864321122344557788885 22344432 333445667999999999 445444 3 899
Q ss_pred EEeCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+..+........ .....+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~ 221 (246)
T 4dzb_B 161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 221 (246)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence 9999888765443321110 023355666789999998888 999999999986654
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-17 Score=173.18 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=123.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+.. ..+.++|+|.++
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 89 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSL 89 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEccC
Confidence 366888899999999999999999987 46789999975311000 0011235777654 345679999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------------CCeeecCCeeeecCCCcEEEEEEccCCCC--C
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------------PPRIVQGDTLYTTEDREIELECISANGKP--P 163 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~ 163 (1011)
+.+|+|.|+|.+.+.... ..+..+.|+|...+. ...+..+..+.+.+|+.+.|.|. +.+.| .
T Consensus 90 ~~~DsG~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~-~~g~~~~~ 165 (276)
T 3auv_A 90 QPEDFATYYCQQHYTTPP---TFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCA-ASGFTISD 165 (276)
T ss_dssp CGGGCEEEEEEECSSSSC---CCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEE-EESSCGGG
T ss_pred ChhhCEEEEEEEecCCcc---cccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEE-ecCccCCC
Confidence 999999999999885321 123346777776542 22344445778899999999999 55555 5
Q ss_pred cEEEEEeCC--ceee--e---c--eeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 164 AEITWIDGT--GTVM--S---N--VRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 164 ~~i~W~k~~--~~l~--~---~--~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.+.|+|++ ..+. . . ..........+|.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 166 ~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 166 YWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp SEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred CEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 899999964 2110 0 0 0000001112222222 2489999999999999999999973
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=167.78 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=120.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-----------------------ceee----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-----------------------DKVV----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-----------------------~~~~----~~~~~L~I~~v~ 599 (1011)
+...|.++.+.+|++++|.|. .+.|.+.+.|+|+.. +... ....+|+|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455678899999999999999 788999999999621 1111 124579999999
Q ss_pred CCCCEEEEEEEEecCCC-----ceeeEEEEEEcCCC------------eee-cCCceeeecCCcEEEEEEEEecCCCCeE
Q psy17146 600 DDLAGRYYCKASVMGFP-----EVGAEATVYLKGRP------------TII-SHRTQFGIPGDTARVECSAFSIPPPEKV 661 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~-----~~s~~~~l~V~~~P------------~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v 661 (1011)
.+|+|.|+|.|.|. .+ .......|.|..++ .+. .+....+.+|++++|.|.+.+.|.| .+
T Consensus 82 ~~DsG~Y~C~~~~~-~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i 159 (238)
T 2p1y_A 82 PSQTSVYFCASGDL-GQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD-YF 159 (238)
T ss_dssp GGGCEEEEEEEEC-------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC-EE
T ss_pred cccCeeEEEEEEeC-CCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC-cE
Confidence 99999999999983 22 12234567776543 444 4566779999999999999999998 99
Q ss_pred EEEECCe-----Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 662 TWSYRGE-----EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 662 ~W~~~g~-----~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.|+|++. .+.. ....++.+..+ ......+|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN--KREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE--TTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEec--CCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999741 1110 01345554321 12335789999999999999999999984
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=170.82 Aligned_cols=165 Identities=14% Similarity=0.249 Sum_probs=122.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~~ 601 (1011)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+... .. .....+|+|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 4566778889999999999999999999999999996421 00 111237999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCC--------------------CeeecCCceeeecCCcEEEEEEEEecC--CCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGR--------------------PTIISHRTQFGIPGDTARVECSAFSIP--PPE 659 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~--------------------P~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~ 659 (1011)
|+|.|+|.|.|...........|.|..+ +.+..+....+.+|++++|.|.+.+.| .+
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~- 163 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS- 163 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS-
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC-
Confidence 9999999999843333445557777653 234456677799999999999999877 67
Q ss_pred eEEEEEC--CeEecc---------------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 660 KVTWSYR--GEEIGV---------------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 660 ~v~W~~~--g~~l~~---------------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.|+|+ +..+.. ....++.+..+. .....+|.|.+++.+|+|.|+|.|.|
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADK--SSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecC--CCCeEEEEECCCCcccCEEEEEEEec
Confidence 8999997 443311 123566655421 13356899999999999999999998
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=174.69 Aligned_cols=250 Identities=14% Similarity=0.147 Sum_probs=102.1
Q ss_pred eeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCCceee-ccCC---cEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 394 RARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVV-GNSP---NLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 394 ~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~~~~~-~~~~---~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
...|.+..|.+|+++.|.|.+.. +.+. +.|.-.-..... ..+. .+.|.+++.+ |.|+|.+... +......+
T Consensus 3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v 78 (291)
T 1mq8_A 3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCP-DGQSTAKT 78 (291)
T ss_dssp EEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECS-SCEEEEEC
T ss_pred EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcC-CccEEEEE
Confidence 34567789999999999999974 4554 888643221112 2222 3777777743 5699999643 33445555
Q ss_pred EEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceee
Q psy17146 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFR 548 (1011)
Q Consensus 469 ~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~ 548 (1011)
.|.|..+|... .
T Consensus 79 ~l~V~~~P~~v--------------------------------------------------------------------~ 90 (291)
T 1mq8_A 79 FLTVYWTPERV--------------------------------------------------------------------E 90 (291)
T ss_dssp EEEECBCCSCC--------------------------------------------------------------------C
T ss_pred EEEEecCCCCC--------------------------------------------------------------------E
Confidence 55554444321 1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceeecC------CCcEEEeecCCCCCEEEEEEEEecCC--C-
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVVGN------SPNLTLLMTSDDLAGRYYCKASVMGF--P- 616 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~~~------~~~L~I~~v~~~d~G~Y~C~a~n~~~--~- 616 (1011)
..+....+.+|+.++|.|.+.+..+. .|+|+|++..+.... ...|.+.....+|.+.|+|+|.|.-. +
T Consensus 91 I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~ 170 (291)
T 1mq8_A 91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170 (291)
T ss_dssp BCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTS
T ss_pred EecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCC
Confidence 11222336678888888888766443 589999986654222 23677777778888899999998311 1
Q ss_pred ----ceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 617 ----EVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 617 ----~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
..++...|.|..+|... ......+.+|+.++|+|.+.|.|++ ..++|+++|+.+.... .. .+
T Consensus 171 ~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~------~g 240 (291)
T 1mq8_A 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TY------GN 240 (291)
T ss_dssp CEEEECCCCEECBC------------------------------------------------------------------
T ss_pred ccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----ee------cC
Confidence 24666788888875331 1112357899999999999998664 2699999999986310 00 11
Q ss_pred ceeEEEEcCC---CC--CCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 689 IKSTLIIRES---RH--DHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~---~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..+.+... .+ ++.+.|+|.|.|...+.++...|+|.+
T Consensus 241 --~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 241 --DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp --------------------------------------------
T ss_pred --CeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 12222222 23 346677788887655566777777765
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=161.34 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=120.7
Q ss_pred CceeEEecCcEEEEEEEcC-----CCCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 35 QDQTAVVGSRVTLPCRVID-----KTGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~-----~~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+.+.+|++|+|.|.+.. +.+.+.|++++..+.....- ...+|..+. ..+..+|+|.+++.+|+|
T Consensus 2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~D~G 78 (201)
T 1dr9_A 2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEG 78 (201)
T ss_dssp CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCE
T ss_pred ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc---cCCCcEEEEecccchhCe
Confidence 3578999999999999964 33589999998765311110 011344431 124568999999999999
Q ss_pred eEEEEEEeCCCCCc-ceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 104 RYQCQVSTGILGEP-AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~-~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
.|+|.+.+..+... ...+..+.|.|..++..|.+.. ....+|+.+.|.|.+..|+|.|+|+|+|++..+......
T Consensus 79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~- 154 (201)
T 1dr9_A 79 TYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD---FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT- 154 (201)
T ss_dssp EEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE-
T ss_pred EEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe---ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccce-
Confidence 99999998543211 1124667888887765555532 122468899999995469999999999998877654322
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.....++..+...+.|.+ ..+|.|.|+|.|.|..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~v---~~~d~g~Y~C~a~n~~~~~ 191 (201)
T 1dr9_A 155 VSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRV 191 (201)
T ss_dssp EEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCE
T ss_pred EEecCCCcEEEEEEEEEE---EecCCCEEEEEEecCccee
Confidence 222233333343344444 5689999999999998866
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-18 Score=182.23 Aligned_cols=196 Identities=17% Similarity=0.230 Sum_probs=132.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
..+.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..-.. ...-...+|+.+..+ ..+.++
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s 101 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST 101 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence 3567888899999999999999999975 4568999997521100 000112468888764 356789
Q ss_pred EEEeecccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEcCC---CCCeee--cCCeeeecCCCcEEEEEEccCCCCC-
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLVPP---DPPRIV--QGDTLYTTEDREIELECISANGKPP- 163 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~~p---~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~- 163 (1011)
|+|.+++.+|+|.|+|.+.+...+ ........+.|+|.... .+|.+. .+....+.+|+.+.|.|.+.+..|+
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 999999999999999999983210 01122334678887632 344443 2223345579999999995444465
Q ss_pred cEEEEEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 164 AEITWIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 164 ~~i~W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
++++|+|++..+..+...... .......+...+.|.|.+...+ |.|.|+|.|.|.....
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 799999998877654332100 0112335566678999888775 4788999999986654
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=169.14 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=133.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCC-----------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP-----------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~-----------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
..+...|..+.+.+|++|+|.|.+.++.+.+.|+|....-.. .......+|+.+..+ ..+.++|+|.+
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~ 81 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA 81 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred cccccCcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence 346778899999999999999999888889999993211000 001112258887764 45678999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
++.+|+|.|+|.+.+... ........+.|+|.. .+.+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 82 v~~~D~G~Y~C~~~~~~~-~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 160 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWG-DEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 160 (240)
T ss_dssp CCGGGCEEEEEEEESSTT-BCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CChhHCEEEEEEEccCCC-cceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence 999999999999974211 122344557788874 23344443 23344566799999999955447766 899999
Q ss_pred CCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+..... ........+...+.|.|.+...+| +|.|+|.|.|.....
T Consensus 161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~ 214 (240)
T 3q5y_A 161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 214 (240)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 9988765443211 011223355666789999999988 779999999976544
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=169.62 Aligned_cols=181 Identities=19% Similarity=0.256 Sum_probs=124.8
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC--Ccc--------cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG--PHR--------NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~--~~~--------~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|++ .... ... .....+|+.+..+...+.++|+|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 4778899999999999999974 3689999863 2110 000 00123688887654456789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|+|.+.+.. .....+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++..
T Consensus 86 ~~~D~G~Y~C~~~~~~-----~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 160 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-----YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 160 (210)
T ss_dssp CGGGCEEEEEEETTSS-----CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CcccCEEEEEEEecCc-----ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence 9999999999998742 122336777764 33445543 23234467899999999955445888 9999998875
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+....... ...+ ..+...+.|.|.++..+| |.|+|.|.|..|..
T Consensus 161 ~~~~~~~~--~~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 204 (210)
T 3d9a_H 161 SGVHTFPA--VLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 204 (210)
T ss_dssp TTEEECCC--EEET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred cceEEcCC--ccCC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 42211100 1112 345556789999998877 99999999998865
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=172.83 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=121.1
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce----------------------ee-----cCCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------VV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~~-----~~~~~L~I~~v~ 599 (1011)
|....+.+|++++|.|.+.+.| .+.+.|+|++ ... .. ....+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 3456789999999999999986 6899999963 111 01 112489999999
Q ss_pred CCCCEEEEEEEEecCC--------CceeeEEEEEEcCCC---------------eee-cCCceeeecCCcEEEEEEEEec
Q psy17146 600 DDLAGRYYCKASVMGF--------PEVGAEATVYLKGRP---------------TII-SHRTQFGIPGDTARVECSAFSI 655 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~--------~~~s~~~~l~V~~~P---------------~i~-~~~~~~v~~G~~v~L~C~~~g~ 655 (1011)
.+|+|.|+|.|.|... ......+.|.|..+| .+. .+....+.+|++++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999998411 112345678887653 233 3456678999999999999999
Q ss_pred CCCCeEEEEE--CCeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 656 PPPEKVTWSY--RGEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 656 p~p~~v~W~~--~g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
|.+ .+.|+| +|..+.. ....++.+.. .+...+|+|.++..+|+|.|+|.|.|....-.....|
T Consensus 167 ~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l 241 (257)
T 1f3r_B 167 INN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKL 241 (257)
T ss_dssp CBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEE
T ss_pred CCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEE
Confidence 988 899999 5554311 1134555432 2335689999999999999999999975111223355
Q ss_pred Ee
Q psy17146 724 KP 725 (1011)
Q Consensus 724 ~V 725 (1011)
.|
T Consensus 242 ~V 243 (257)
T 1f3r_B 242 EL 243 (257)
T ss_dssp CC
T ss_pred EE
Confidence 55
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=166.04 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=118.3
Q ss_pred cCCceEEEcCCCcEEEEEEEecC-------CCCeEEEEecCCce-----------------------ee-----cCCCcE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN-------PAPEITWIHEDSDK-----------------------VV-----GNSPNL 593 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~-------p~p~v~W~k~~~~~-----------------------~~-----~~~~~L 593 (1011)
..|..+.+.+|++++|.|.+.+. +.+.+.|+|++... .. ..+.+|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL 84 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL 84 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence 45778899999999999999865 57799999986421 11 123479
Q ss_pred EEeecCCCCCEEEEEEEEecCCCc---eeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEec----CCCCeEEE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPE---VGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSI----PPPEKVTW 663 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~---~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~----p~p~~v~W 663 (1011)
+|.+++.+|+|.|+|.+.|..... .+..+.|.|.. +|.|..+. .+.+|+.++|.|.+.|. |.| .++|
T Consensus 85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p-~v~W 161 (214)
T 2zg1_A 85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPL-TFSW 161 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCC-EEEE
T ss_pred EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCc-eEEE
Confidence 999999999999999999842111 13567788876 45665433 26789999999999874 778 9999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC--eEEEEEEEe
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS--DSVEIMLKP 725 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 725 (1011)
++++..+.. .+ ....+.|.|..+..+|.|.|+|.|.|..|. .++.+.|.|
T Consensus 162 ~~~~~~~~~---~~---------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLD---PE---------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSC---SS---------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCC---CC---------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 999865421 11 122478999999999999999999998764 455555544
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=169.56 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=121.7
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC----Cc---c----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG----PH---R----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~----~~---~----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.+|..+.+.+|++|+|.|.+.+. ...+.|+|++. .+. .. . .....+|+.+..+...+.++|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 35778899999999999999863 46899999752 110 00 0 001136888876655678899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+... ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 161 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWF---PYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGS 161 (227)
T ss_dssp SCCGGGCEEEEEEEEETTE---EEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEECCCCc---eEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCC
Confidence 9999999999999987521 1223346788876 23344443 22333456899999999955445876 99999988
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+...... ..... ..+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 162 ~~~~~~~~~--~~~~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 207 (227)
T 1mju_H 162 LSSGVHTFP--AVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASST 207 (227)
T ss_dssp BCTTEEECC--CEEET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE
T ss_pred CcCCcEECC--ceecC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc
Confidence 764211000 01112 345566789999998888 99999999977654
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=173.44 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=126.9
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|....... .......+|+.+..+...+.++|+|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 4678899999999999999762 457999985421100 001122368888876666888999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
++.+|+|.|.|.+.+............+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+.++.|.+ .+.|+|++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 999999999999987521111233445678887 444556654 33444566799999999955557876 999999886
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
.+...... ..... ..+...+.|.|.+...+| |.|+|.|.|..+...
T Consensus 166 ~~~~~~~~--~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~ 211 (253)
T 3liz_H 166 SSGVHTFP--AVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 211 (253)
T ss_dssp CTTEEECC--CEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred ecceEeCC--ccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence 43211100 01112 355666899999999999 999999999987653
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-18 Score=168.47 Aligned_cols=140 Identities=17% Similarity=0.236 Sum_probs=108.3
Q ss_pred ccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEee-cccccCCcEEEEEEEcCCccceeeEEEEEEe--c
Q psy17146 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN-ITRHQHDSIVKCEVHNDVGKSEDSETLDVTY--G 390 (1011)
Q Consensus 314 ~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~-~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~--~ 390 (1011)
...+|+.++|.|.+.+ +. .+.|+|||..+... .+..|.|.+ +..+ |+|.|+|.|.|..|..+....+.|.. +
T Consensus 10 v~~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~-~~~~L~I~~~~~~~-D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~ 84 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE--NLKWEKNGQELPQK-HDKHLVLQDFSEVE-DSGYYVCYTPASNKNTYLYLKARVGSADD 84 (186)
T ss_dssp EEEETTEEEEECSSCC-CT--TCEEEETTEEECSC-CCSEEEEESCCTTT-SCEEEEEECSSCCCCCCEEECCCCCSCCC
T ss_pred EEeCCcEEEEEEeCCC-CC--ceEEEECCEECCCC-CCCEEEECCCCccc-cCEEEEEEEEeCCCcEEEEEEEEEecccc
Confidence 3478999999999987 43 49999999999763 566899999 8887 99999999999988865555554433 2
Q ss_pred ceE----------------e--eCC--Cc---eEecCCCcEEEEeecCCCCCCceEEEeCCCcee--eccCCcEEEEeec
Q psy17146 391 PRF----------------R--ARP--YS---VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--VGNSPNLTLLMTS 445 (1011)
Q Consensus 391 P~~----------------~--~~p--~~---~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--~~~~~~L~I~~v~ 445 (1011)
|.. . ..+ .. ..+.+|+++.|.|.+ |.|.|+|+|++..+. ......|.|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~ 161 (186)
T 1jbj_A 85 AKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGNNA 161 (186)
T ss_dssp CCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEEEETT
T ss_pred cccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceEEECCCC
Confidence 210 0 000 01 234499999999999 889999999987654 2356789999999
Q ss_pred cCCCeEEEEEEEEcCC
Q psy17146 446 DDLAGRYYCKASVMGF 461 (1011)
Q Consensus 446 ~~d~G~Y~C~a~n~~~ 461 (1011)
.+|+|.|+|.|.|..+
T Consensus 162 ~~D~G~Y~C~a~N~~g 177 (186)
T 1jbj_A 162 KDPRGTYQCQGAKETS 177 (186)
T ss_dssp SCCEEEEEEEESSCEE
T ss_pred cCcCEEEEEEEEcCcC
Confidence 9999999999998543
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=155.93 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=127.8
Q ss_pred ceeecCCc--eeEEecCcEEEEEEEcCCCC--eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 29 KFAMEPQD--QTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 29 ~~~~~p~~--~~v~~G~~v~L~C~v~~~~~--~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.++|.+ +.|.+|++++|.|.+..+.+ .|+|++.+..+ .+.... .+...|.|.+++.+|+|.
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~~~~l---------~~~~~~----~~~~~L~I~~v~~~d~G~ 73 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL---------GAVQSD----TGRSVLTVRNASLSAAGT 73 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT---------CCEEEE----SSEEEEEECSCCGGGCEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeeccccc---------CcEEec----CCccEEEECccCcccCce
Confidence 45555554 69999999999999955777 99999966433 122221 244589999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC----cEEEEEeCCceeeecee
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP----AEITWIDGTGTVMSNVR 180 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~----~~i~W~k~~~~l~~~~~ 180 (1011)
|.|.+.+.. +..+..+.|+|+.+|..+.+... ...+|+.+ |+|.+....|. ++|+|+||+.++.....
T Consensus 74 Y~C~a~n~~----~~~~~~~~ltV~~~P~~~~i~~~---~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~ 145 (210)
T 1gsm_A 74 RVCVGSCGG----RTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQA 145 (210)
T ss_dssp EEEEEEETT----EEEEEEEEEEEEBCCSEEEEESS---SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEE
T ss_pred EEEEEEeCC----CceEEEEEEEEEecCCCcEEccc---eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccc
Confidence 999999853 34667899999998887666532 45678888 99995555674 59999999998854321
Q ss_pred EE--E------eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 181 VT--E------EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 181 ~~--~------~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.. . ........+...++|.+.....+|.+.|+|+|.+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~ 195 (210)
T 1gsm_A 146 LGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL 195 (210)
T ss_dssp CCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred cccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence 11 1 001223477888899999999999999999999876554
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=167.75 Aligned_cols=194 Identities=21% Similarity=0.269 Sum_probs=131.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------Cc---ccCCC-CcceEEeecCCCceeEEEEe
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PH---RNLSG-FDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~---~~~~~-~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+.+...|..+.+.+|++|+|.|....+.+.+.|+|.. .... .. ..... .+|+.+..+ ..+.++|+|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEEC
Confidence 4577788999999999999999554577799999821 1100 00 00011 168887764 3567899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCee--ecCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRI--VQGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
+++.+|+|.|+|.+.+.........+..+.|+|... ..+|.+ ..+....+.+|+.+.|.|.+.+..|.+ .++|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 999999999999998632222234455678888852 223333 233344466799999999954446665 89999
Q ss_pred eCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|++..+..+........ .....+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~ 220 (245)
T 4ei6_B 162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence 99888765443321110 023356666789999998888 999999999976544
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=166.29 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=126.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC----Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG----PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~----~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. .+.+.|+|+. ..+. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 4667899999999999999863 4689999864 2110 00 00112368888776556778999999
Q ss_pred cccCCCceEEEEEEeCCCC----CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG----EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~----~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
++.+|+|.|+|.+.+..+. ........+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 165 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 165 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence 9999999999999885320 1012234468888863 3345443 22222356899999999955445876 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+... ........++ .+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~-~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 215 (225)
T 1op3_H 166 SGALTSGVH-TFPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 215 (225)
T ss_dssp TTSCCTTCE-ECCCEECTTS-CEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred cCCCcCCeE-ecCceeCCCC-CEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence 988653211 1100112233 44556789999998888 99999999976643
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=167.19 Aligned_cols=169 Identities=18% Similarity=0.333 Sum_probs=120.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-------------------------ee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-------------------------VV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-------------------------~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+... . .. ....+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4456789999999999999876 679999986411 0 00 112489999
Q ss_pred ecCCCCCEEEEEEEEecCC--C--ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 597 MTSDDLAGRYYCKASVMGF--P--EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~--~--~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
+++.+|+|.|.|.+.|... . .....+.|.|.. +|.+.. .....+..|+.++|.|.+.|. |.|+.|+|+++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 166 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 166 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence 9999999999999998321 1 233445677754 466652 333346789999999999996 87768999999
Q ss_pred CeEecccCCCCeE-EecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 667 GEEIGVGSSDDYS-VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 667 g~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
|..+... .+. ...+. .....+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus 167 g~~~~~~---~~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 167 SLSSGVH---TFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp TBCTTEE---EEEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred CeEcceE---eccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 9875421 111 11110 01124689999999999 999999999999877666554
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=167.62 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=120.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|+....... ......+|+.+.. ..+.++|+|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVE 79 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCC
Confidence 35777889999999999999999987 46799999964211000 0011235777654 2356789999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------CCeeecCCeeeecCCCcEEEEEEccCCCC--CcE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------PPRIVQGDTLYTTEDREIELECISANGKP--PAE 165 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~~~ 165 (1011)
.+|+|.|+|.+.+... ...+..+.|.|..++. +..+..++...+.+|+.++|.|. +.+.| .+.
T Consensus 80 ~~D~G~Y~C~~~n~~~---~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~g~~~~~~~ 155 (242)
T 2znx_A 80 TEDFGMYFCQQSNSXP---YTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCS-VTGDSITSDY 155 (242)
T ss_dssp GGGCEEEEEEECSSSS---CEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEE-EESSCGGGSC
T ss_pred hHHCEEEEEeEecCCc---eEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEE-EEccccCCcc
Confidence 9999999999987532 1223446788877553 22344444456899999999999 55665 578
Q ss_pred EEEEeCC--ceeee------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 166 ITWIDGT--GTVMS------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 166 i~W~k~~--~~l~~------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+.|+|++ ..+.. ...........++.... ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 156 v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 156 XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 9999953 22210 00000000112222111 258999999999999999999873
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=166.19 Aligned_cols=165 Identities=15% Similarity=0.278 Sum_probs=121.2
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCC----CCeEEEEecC--Cce--ee-------------------cCCCcEEEeec
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNP----APEITWIHED--SDK--VV-------------------GNSPNLTLLMT 598 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p----~p~v~W~k~~--~~~--~~-------------------~~~~~L~I~~v 598 (1011)
.+...|..+.+.+|++++|.|.+.+.| .+.+.|+|++ ... .. ....+|+|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 355667889999999999999999998 7899999963 111 10 11237999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCC-------eeecCCceeeecCCcEEEEEEEEecCC--CCeEEEEEC--C
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRP-------TIISHRTQFGIPGDTARVECSAFSIPP--PEKVTWSYR--G 667 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P-------~i~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~--g 667 (1011)
+.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|.+.|.|. + .+.|+|+ |
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~g 161 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDT-YMHWVKQRPE 161 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTT
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCC-EEEEEEECCC
Confidence 99999999999998422234556778887643 233556778999999999999999874 5 8999996 3
Q ss_pred eEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 668 EEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 668 ~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
..+. .....++.+..+ ......+|.|.+++.+|+|.|+|.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 162 QGLEWIGRIDPANGNSKYVPKFQGKATITAD--TSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp SCCEEEEEEETTTTEEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CCcEEEEEEcccCCccccCccccccEEEEEc--ccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 2221 011345555432 1234578999999999999999999953
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-17 Score=165.89 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=125.9
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--e---cCC-c---------ccCCCCcceEEeecCCCceeEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--A---LGP-H---------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~---l~~-~---------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++. . +.. . ......+|+.+..+...+.++|+
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ 84 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence 34778899999999999999863 46899999642 1 100 0 00011368888765555678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
|.+++.+|+|.|+|.+.+.... .......+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 163 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGA-MDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY 163 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSS-EEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred EccCCHHHCEEEEEEEecCCcc-cceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEec
Confidence 9999999999999999885311 11222446788874 234455432 3333467899999999955444988 999999
Q ss_pred CCceee--eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVM--SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++.... ..... . .. ..+...+.|.|.++..+| |.|+|.|.|..|..
T Consensus 164 ~~~~~~~~~~~~~---~-~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 211 (220)
T 1pz5_B 164 GALSSGVRTVSSV---L-QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV 211 (220)
T ss_dssp GTCCTTEEECCCE---E-ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred CCcccceEEcCCc---c-cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence 877421 11111 1 12 345556899999988877 99999999998865
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=166.09 Aligned_cols=165 Identities=16% Similarity=0.327 Sum_probs=118.6
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCC--ce--e-------------------ecCCCcEEEee
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDS--DK--V-------------------VGNSPNLTLLM 597 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~--~~--~-------------------~~~~~~L~I~~ 597 (1011)
.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. .. . .....+|+|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 82 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 82 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence 355667889999999999999999998 68999999642 11 0 01224799999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC--------------eeecCCceeeecCCcEEEEEEEEecC--CCCeE
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP--------------TIISHRTQFGIPGDTARVECSAFSIP--PPEKV 661 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P--------------~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~~v 661 (1011)
++.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|.+.+.| .+ .+
T Consensus 83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~v 161 (247)
T 1svz_A 83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDY-SM 161 (247)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS-CE
T ss_pred CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCc-EE
Confidence 999999999999998422223445678887643 34455556699999999999999985 45 89
Q ss_pred EEEECC--eEec----c-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 662 TWSYRG--EEIG----V-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 662 ~W~~~g--~~l~----~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.|+|++ ..+. . ....++.+..+ ......+|.|.+++.+|+|.|.|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD--TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe--cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999963 2111 0 01345555432 1233579999999999999999999996
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=157.34 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=111.6
Q ss_pred CCceeEEecCcEEEEEEEcCC--CCeeEEeeC-CeecCCcc------c--CCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK--TGVLQWTKD-DFALGPHR------N--LSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~-~~~l~~~~------~--~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+.+.+|++|+|.|.+..+ .+.|.|+|+ +..+.... . ....+|+.+. .+.++|+|.+++.+|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~D~ 81 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKEDR 81 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGGGC
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHHHC
Confidence 457899999999999998654 569999995 32221100 0 1112577762 2345899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+.. ..+..+.|.|..++..|.+.. ++..+.|.|.+..+ |.+.++|+|++..+..
T Consensus 82 G~Y~C~v~~~~-----~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----- 143 (180)
T 2dru_A 82 GDYYMRMLHET-----EDQWKITMEVYEMVSKPMIYW-------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS----- 143 (180)
T ss_dssp EEEEEEEESSS-----EEEEEEEEEEECCCCCCEEEE-------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----
T ss_pred eEEEEEEEcCC-----eEEEEEEEEEECCCCCCEEEe-------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----
Confidence 99999997642 356778899998766665532 34679999995466 9999999999887641
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
. .. .+|.+.. .+|+|.|+|.|.|..+..
T Consensus 144 ---~-~~------~~l~~~~--~~d~g~Y~C~a~N~~~~~ 171 (180)
T 2dru_A 144 ---L-RQ------KTMSYQW--TNLRAPFKCKAVNRVSQE 171 (180)
T ss_dssp ---E-SS------SEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred ---C-CC------CEEEEEE--hhcCccEEEEEecCcCcc
Confidence 1 11 2455533 789999999999998765
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=165.30 Aligned_cols=172 Identities=21% Similarity=0.362 Sum_probs=117.7
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--cee-----------------------e-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DKV-----------------------V-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~~-----------------------~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. ... . ....+|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 45678899999999999999887 68999998742 110 0 1235899999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
++.+|+|.|.|.+.|.........+.|.|.. +|.+.. .....+..|+.++|.|.+.|. |.|..|+|+++|..+.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 165 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 165 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence 9999999999999983211223345778864 465552 233346789999999999986 7666899999998653
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
........ .. ......+.|.|..+..+| |.|+|.|.|..+.......+.+
T Consensus 166 ~~~~~~~~--~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~ 215 (227)
T 1mju_H 166 VHTFPAVL--QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP 215 (227)
T ss_dssp EEECCCEE--ET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred cEECCcee--cC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCC
Confidence 21111111 10 001134689999999888 9999999998888776666655
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=166.67 Aligned_cols=167 Identities=17% Similarity=0.296 Sum_probs=121.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc---------------------eee-----cCCCcEEEeec
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------------------KVV-----GNSPNLTLLMT 598 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~---------------------~~~-----~~~~~L~I~~v 598 (1011)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.... ... ....+|+|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 4567778899999999999999999999999999984311 001 12346999999
Q ss_pred CCCCCEEEEEEEEecCCC---ceeeEEEEEEcC--------------------CCeee-cCCceeeecCCcEEEEEEEEe
Q psy17146 599 SDDLAGRYYCKASVMGFP---EVGAEATVYLKG--------------------RPTII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~--------------------~P~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
+.+|+|.|+|.|.|.... .....+.|.|.. +|.+. .+....+.+|++++|.|.+.+
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence 999999999999984221 233345677765 55565 445667889999999999988
Q ss_pred cCCCCeEEEEECC--eEe---cc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 655 IPPPEKVTWSYRG--EEI---GV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 655 ~p~p~~v~W~~~g--~~l---~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
. .+ .+.|+|++ ..+ .. ....++.+... .....+|+|.+++.+|+|.|+|.|.|..|.
T Consensus 164 ~-~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 164 S-HN-YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT---TQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp C-CS-EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC---SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred C-ce-EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC---CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 7 66 89999842 111 10 01234444332 234568999999999999999999998773
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=167.49 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=124.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cc-----------------------eeec-----CCCcEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SD-----------------------KVVG-----NSPNLT 594 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~-----------------------~~~~-----~~~~L~ 594 (1011)
+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. .... ...+|+
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 34556788899999999999999865 7799999932 11 1111 123499
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---------------CCeee-cCCceeeecCCcEEEEEEEEecCCC
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---------------RPTII-SHRTQFGIPGDTARVECSAFSIPPP 658 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---------------~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p 658 (1011)
|.+++.+|+|.|+|.|.|.........+.|.|.. +|.+. .+....+.+|++++|.|.+.+.|.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 9999999999999999983322234566777774 45555 4456789999999999999998765
Q ss_pred ---CeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEE
Q psy17146 659 ---EKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIM 722 (1011)
Q Consensus 659 ---~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~ 722 (1011)
..+.|+|+ +..+. .....++.... .+...+|+|.+++.+|+|.|+|.|.|..+.. ..-..
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG----SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence 37999995 22221 01124454432 2345689999999999999999999976532 23345
Q ss_pred EEec
Q psy17146 723 LKPQ 726 (1011)
Q Consensus 723 l~V~ 726 (1011)
|.|.
T Consensus 240 l~v~ 243 (253)
T 3uzq_A 240 LEIK 243 (253)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=166.74 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=123.8
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--cee-e---------------------------cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DKV-V---------------------------GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~~-~---------------------------~~~~~L~I~~v~ 599 (1011)
....+.+|++++|.|.+.+.+ .+.+.|+|... ... . ....+|+|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT 89 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence 456699999999999999877 68999998531 110 0 112349999999
Q ss_pred CCCCEEEEEEEEec---CCCceeeEEEEEEcC----------------CCeeec-CCceeeecCCcEEEEEEEEecCCCC
Q psy17146 600 DDLAGRYYCKASVM---GFPEVGAEATVYLKG----------------RPTIIS-HRTQFGIPGDTARVECSAFSIPPPE 659 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~---~~~~~s~~~~l~V~~----------------~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~ 659 (1011)
.+|+|.|+|.|.|. ........+.|.|.. +|.+.. +....+.+|++++|.|.+.+.|.+
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~- 168 (256)
T 3umt_A 90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS- 168 (256)
T ss_dssp GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT-
T ss_pred cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc-
Confidence 99999999999984 133445567788875 566664 556789999999999999999988
Q ss_pred eEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 660 KVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 660 ~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
.+.|+|+ +..+. .....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR----SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEEec----CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 8999994 22221 01134555433 3345789999999999999999999976533 234556664
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=164.60 Aligned_cols=161 Identities=18% Similarity=0.305 Sum_probs=128.8
Q ss_pred cCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 627 KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 627 ~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
..+|.|..+.+..+.+|+.++|.|.+.|.|.| .|.|+|+|..+......++.+.. .+..+.|.|.++..+|+|.|
T Consensus 17 ~~~P~~~~p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y 91 (215)
T 3mtr_A 17 MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYN----TPSASYLEVTPDSENDFGNY 91 (215)
T ss_dssp CEEEEEECCSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEE----ETTEEEEEECCCSGGGCEEE
T ss_pred ecCCcccCCceEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEec----CCCeeEEEEecCChhhCeEE
Confidence 35678877777889999999999999999999 99999999999865546666654 23368999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc--cCC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC--KES 784 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W--~~~ 784 (1011)
+|.|.|..|..+..+.|.|. ..+.+|..+.+. ....++.++| +..
T Consensus 92 ~C~a~n~~g~~~~~~~l~v~--------------------------------~~P~~p~~~~~~-~~~~~~~l~w~~p~~ 138 (215)
T 3mtr_A 92 NCTAVNRIGQESLEFILVQA--------------------------------DTPSSPSIDQVE-PYSSTAQVQFDEPEA 138 (215)
T ss_dssp EEEEECSSCEEEEEEEEEEC--------------------------------CCCCCCEEEEEE-EETTEEEEEEECCSC
T ss_pred EEEEEECCCceEEEEEEEEC--------------------------------CCCCCCcceEEE-EecceEEEEEecCCc
Confidence 99999999999999988873 234466665553 4556789999 566
Q ss_pred CCCCCCcCcceeeecCcc------------------------cccccccc---c---CCCCCCC-ccccccc
Q psy17146 785 DNSSNISDIKLEFRTGSS------------------------VSNVHLDY---A---GHDSETG-SESVHTR 825 (1011)
Q Consensus 785 d~~s~I~~Y~ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~ 825 (1011)
+++++|..|.|+++.... .|...|.| | .|.|++| ...++|+
T Consensus 139 ~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~ 210 (215)
T 3mtr_A 139 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210 (215)
T ss_dssp CCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred cCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence 889999999999886542 67778998 5 8999988 4345554
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=165.11 Aligned_cols=184 Identities=16% Similarity=0.244 Sum_probs=120.8
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+.. .+. . .......+|+.+.. ..+.++|+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 80 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI 80 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence 46677899999999999999999874 47899999532 110 0 00011235777654 345679999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------CCeeecCCeeeecCCCcEEEEEEccCCCC-
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------PPRIVQGDTLYTTEDREIELECISANGKP- 162 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P- 162 (1011)
.+++.+|+|.|+|.+.+... ...+..+.|.|..++. +..+..++...+.+|+.++|.|. +.+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~ 156 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFP---PTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCK-ATNYAF 156 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSS---CEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEE-EESSCG
T ss_pred CCCCHHHCEEEEEEEccCCc---cEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEE-EcCccc
Confidence 99999999999999987532 1233446788876542 23455555566899999999999 55554
Q ss_pred -CcEEEEEeCC--ceeee-------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 163 -PAEITWIDGT--GTVMS-------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 163 -~~~i~W~k~~--~~l~~-------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
.+.+.|+|++ ..+.. +..........+|.... ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 157 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 157 TDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp GGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 5799999964 21100 00000000112222211 258999999999999999999985
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=163.08 Aligned_cols=189 Identities=13% Similarity=0.207 Sum_probs=127.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecC----Cc-cc-----CCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALG----PH-RN-----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~----~~-~~-----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
+...|..+.+.+|++|+|.|.+.+ +...+.|+|... .+. .. .. -...+|+.+..+...+.++|+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 556788999999999999999987 345899998642 110 00 00 0034788887765557889999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC--------CCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP--------PDPPRIVQGDTLYTTEDREIELECISANGKPP-AE 165 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~--------p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~ 165 (1011)
.+++.+|+|.|.|.+.+............+.|+|... +..+.+..+....+.+|+.+.|.|.+.+.+|. +.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 9999999999999998741111112234467888721 22233433333445678999999996555686 69
Q ss_pred EEEEe-CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWID-GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++|+| ++..+....... ....+ ..+...+.|.|.+... | |.|+|.|.|..+..
T Consensus 164 v~W~~~~g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGD-TLKTN-DTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp EEEECTTSSCBCCCEECC-CEEET-TEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred EEEEccCCeEccccccce-eecCC-CCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 99999 666654322211 11223 3555667899988875 4 99999999987754
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=163.93 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=124.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC--Ccc--------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG--PHR--------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~--~~~--------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|..+.+.+|++|+|.|.+.+.. +.+.|+|+. ..+. ... .....+|+.+..+...+.++|+|.
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 46788999999999999998742 789999863 2210 000 001236888877655567899999
Q ss_pred ecccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEE
Q psy17146 96 PVMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EIT 167 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~ 167 (1011)
+++.+|+|.|+|.+.+..+. ........+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~ 165 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT 165 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence 99999999999999875310 000122346788874 33445544 23333457899999999955445887 999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+....... .... ..+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 166 W~~~~~~~~~~~~~~--~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 166 WNSGSLSSGVHTFPA--VLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp EGGGTCCTTEEEEEE--EEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred EeeCCcccCceEcCc--eeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 999887542111111 1112 355566889999988866 99999999998865
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=177.17 Aligned_cols=199 Identities=9% Similarity=0.036 Sum_probs=142.8
Q ss_pred cCCceeeecCCcEEEEEEEEec-------CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-------PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-------p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.|.+..+..|++++|.|.+.+. |.| .|.|++||..+.. .++.+.. +..+.|.|.++...| |.|
T Consensus 10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p-~i~W~~~g~~i~~---~~~~~~~-----~~~~~L~i~~~~~~~-g~Y 79 (303)
T 1i1r_A 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPK---EQYTIIN-----RTASSVTFTDIASLN-IQL 79 (303)
T ss_dssp ESSSCEEETTCCEEEEEEECHHHHHHHTCCGG-GEEEEETTEECCG---GGCEEEE-----TTEEEEEECSCCCSE-EEE
T ss_pred ccCCceEeCCCCEEEEEEECCccccccCCChh-heEEEECCEECCh---hheeeeC-----CcEEEEEEcCcCCCc-eEE
Confidence 4556779999999999999974 777 8999999998853 2444432 235789999999884 999
Q ss_pred EEEEEcCCCCeEE---EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc-c
Q psy17146 707 NCSVSNPYGSDSV---EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC-K 782 (1011)
Q Consensus 707 ~C~a~N~~G~~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W-~ 782 (1011)
+|.|.|. |.... .+.|.+ ...|.+|.++.+.....+++.++| +
T Consensus 80 ~C~a~~~-g~~~~~~~~~~l~v--------------------------------~~~P~~P~~l~~~~~~~~~v~l~W~~ 126 (303)
T 1i1r_A 80 TCNILTF-GQLEQNVYGITIIS--------------------------------GLPPEKPKNLSCIVNEGKKMRCEWDG 126 (303)
T ss_dssp EEEEEET-TTEEEEEEEEEEEE--------------------------------ECCCCCCEEEEEEEETTSCCEEEEEC
T ss_pred EEecccC-CCcceEEEEEEEec--------------------------------cCCCCCCeeeEEEECCCCcEEEEccC
Confidence 9999884 54432 233333 223338888888887778999999 6
Q ss_pred CCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CCCCCCCccccccccccccccccc
Q psy17146 783 ESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVP 835 (1011)
Q Consensus 783 ~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~ 835 (1011)
+.+++. +++|.|+++.... .|+++|.| | +|.|.++...+.+...+|..+|.+
T Consensus 127 ~~~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~ 205 (303)
T 1i1r_A 127 GRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 205 (303)
T ss_dssp CSCCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE
T ss_pred CCCCCC-CcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcc
Confidence 667664 5799999874211 48999999 5 777765544455566677788887
Q ss_pred CCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 836 MDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 836 ~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
+..... ..+.+...|+|+||.. .||.+++|+|+||+.+...
T Consensus 206 ~~v~~~-~~~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~~~ 246 (303)
T 1i1r_A 206 LSVINS-EELSSILKLTWTNPSI--KSVIILKYNIQYRTKDAST 246 (303)
T ss_dssp EEEECC-SSSSSCEEEEEECCGG--GGTSCEEEEEEEEETTCSS
T ss_pred eEEEEe-cCCCCEEEEEECCCCC--CCcccEEEEEEEEeCCCCC
Confidence 765331 0022344569999654 6789999999999987543
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=165.55 Aligned_cols=181 Identities=19% Similarity=0.235 Sum_probs=120.2
Q ss_pred eecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++.... ........+|+.+... .+.++|+|.+++.
T Consensus 6 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~ 83 (256)
T 3ux9_B 6 LTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKS--GTSASLAITGLQS 83 (256)
T ss_dssp CBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE--TTEEEEEECSCCG
T ss_pred EecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEcc--CCEEEEEECCCCh
Confidence 34566799999999999999986 356899999642111 0011112357777543 3567999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------------------CCeeecCCeeeecCCCcEEEEEEccCCC
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------------------PPRIVQGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------------------~~~i~~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
+|+|.|+|.+.+.... ....+..+.|.|...+. .+.+..++...+.+|+.+.|.|. +.+.
T Consensus 84 ~DsG~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~ 161 (256)
T 3ux9_B 84 EDEADYYCQVRDNNEN-EWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCA-ASGF 161 (256)
T ss_dssp GGCEEEEEEEEETTTT-EEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEE-EESS
T ss_pred hhCEEEEEEEEECCCC-ceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEE-EeCC
Confidence 9999999999885322 22344557788876552 23455555667899999999999 5565
Q ss_pred C--CcEEEEEeCC--ceeeec-----------------eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 162 P--PAEITWIDGT--GTVMSN-----------------VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 162 P--~~~i~W~k~~--~~l~~~-----------------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
| .+.+.|+|++ ..+..- .++........ ...+|+|.+++.+|+|.|+|.|.|..
T Consensus 162 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 162 TFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSK----NTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp CGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTT----TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred cccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCC----CEEEEEECCCChhhCEEEEEEEEcCC
Confidence 5 7899999863 222100 01111111111 12469999999999999999999864
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=172.39 Aligned_cols=176 Identities=15% Similarity=0.240 Sum_probs=121.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCC-C-eEEEEecCC--ce------------------ee---cCCCcEEEeecC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPA-P-EITWIHEDS--DK------------------VV---GNSPNLTLLMTS 599 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~-p-~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~ 599 (1011)
+.+.. |..+.+.+|++++|.|.+.+.+. + .+.|+|++. .. .. ....+|+|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 44445 77888999999999999998654 4 799999742 11 00 123489999999
Q ss_pred CCCCEEEEEEEEecCCC---ceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEe
Q psy17146 600 DDLAGRYYCKASVMGFP---EVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEI 670 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l 670 (1011)
.+|+|.|+|.|.|. .+ .....+.|.|. .+|.+.. +....+..|+.++|.|.+.|.++ +..|+|+|||+.+
T Consensus 100 ~~D~G~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 178 (234)
T 2j6e_L 100 SEDEADYYCATWDD-SLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV 178 (234)
T ss_dssp STTCSEEEEEEEET-TTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred HHHCEEEEEEEEcC-CcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence 99999999999994 33 23334566663 4566552 23333446899999999998644 3489999999998
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
..+.................+.|.|.++..+|.|.|+|.|.|..+..+.++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 6321000000000000123468999999999999999999999987666553
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=169.49 Aligned_cols=190 Identities=12% Similarity=0.166 Sum_probs=111.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCe--ecC--Ccc---------cCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDF--ALG--PHR---------NLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~--~l~--~~~---------~~~~~~r~~i~~~~~~~~~~L 92 (1011)
+|.+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|... ... ... .-...+|+.+..+...+.++|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 366788899999999999999999987 566899998421 110 000 001112444444445567789
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC--------------CCeee-cCCeeeecCCCcEEEEEEc
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--------------PPRIV-QGDTLYTTEDREIELECIS 157 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~--------------~~~i~-~~~~~~v~eg~~v~L~C~~ 157 (1011)
+|.+++.+|+|.|+|.+.+.... .......+.|.|..... .+.+. .+..+.+.+|+++.|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYY-KKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSS-CEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEEeeCCcc-ccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999875321 12345557788887532 23344 3456788999999999984
Q ss_pred cCCCCCcEEEEEeCCc--eeeeceeEE--EeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEe
Q psy17146 158 ANGKPPAEITWIDGTG--TVMSNVRVT--EEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 158 ~~g~P~~~i~W~k~~~--~l~~~~~~~--~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
....|.+.+.|+|++. .+..-.... ......+|.... ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 4435889999998532 111000000 000001111110 24699999999999999999985
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=152.62 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCce----eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDK----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.+..|++++|.|.+ +.|.| .|.|++.+..+ .......|.|.+++.+|+|.|.|.|.| ..+..+..+.|.|
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n-~~~~~~~~~~ltV 93 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSC-GGRTFQHTVQLLV 93 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEe-CCCceEEEEEEEE
Confidence 4789999999999999 99888 99999976322 234457899999999999999999999 5677888999999
Q ss_pred cCCCeeecCCceeeecCCcEEEEEEEEec-CCC---CeEEEEECCeEecccCCCCeEEe--------cCCcCccceeEEE
Q psy17146 627 KGRPTIISHRTQFGIPGDTARVECSAFSI-PPP---EKVTWSYRGEEIGVGSSDDYSVL--------EDPLKEGIKSTLI 694 (1011)
Q Consensus 627 ~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p---~~v~W~~~g~~l~~~~~~~~~~~--------~~~~~~~~~~~L~ 694 (1011)
..+|............|+.+ |+|.+.|. |.+ .+|+|+|||++|.......-.+. .........++|.
T Consensus 94 ~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~ 172 (210)
T 1gsm_A 94 YAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWR 172 (210)
T ss_dssp EBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEE
T ss_pred EecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEe
Confidence 99997653212267788888 99999987 642 38999999999963211010110 0001112345677
Q ss_pred EcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 695 IRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
+.....+|.+.|+|.|.|.+-....
T Consensus 173 ~~~~~~D~~~~~tC~a~~~L~~~~~ 197 (210)
T 1gsm_A 173 LPPLGTPVPPALYCQATMRLPGLEL 197 (210)
T ss_dssp CCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred ecCCcccCCceEEEEEEeeCCCCcc
Confidence 6666666668999999998864443
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=163.41 Aligned_cols=163 Identities=17% Similarity=0.337 Sum_probs=118.2
Q ss_pred cCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--ee---------------------ecCCCcEEEeecCCCCC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--KV---------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~~---------------------~~~~~~L~I~~v~~~d~ 603 (1011)
..|..+.+.+|++++|.|.+.+. +.+.+.|+|++.. .. .....+|+|.+++.+|+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 34557889999999999999988 7889999996311 10 01123799999999999
Q ss_pred EEEEEEEEecCCC--ceeeEEEEEEcCCC---------------------eeecCCceeeecCCcEEEEEEEEecC--CC
Q psy17146 604 GRYYCKASVMGFP--EVGAEATVYLKGRP---------------------TIISHRTQFGIPGDTARVECSAFSIP--PP 658 (1011)
Q Consensus 604 G~Y~C~a~n~~~~--~~s~~~~l~V~~~P---------------------~i~~~~~~~v~~G~~v~L~C~~~g~p--~p 658 (1011)
|.|+|.|.|.... .....+.|.|..+| .+..+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 9999999983221 33455678887765 45555566689999999999999887 56
Q ss_pred CeEEEEEC--CeEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 659 EKVTWSYR--GEEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 659 ~~v~W~~~--g~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.+.|+|+ +..+. .....++.+..+. .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 167 -~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 167 -AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN--SKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp -EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred -EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecC--CCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 8999997 33221 0122366655431 2335679999999999999999999974
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=164.41 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=117.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c----------------------eeec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D----------------------KVVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~----------------------~~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. . .... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 5567889999999999999886 48999998631 1 1110 12389999999
Q ss_pred CCCCEEEEEEEEecCCCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEeccc
Q psy17146 600 DDLAGRYYCKASVMGFPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~ 673 (1011)
.+|+|.|+|.|.|. . .....+.|.|. .+|.+. .+....+..|+.++|.|.+.|. |.|..|+|+++|..+...
T Consensus 87 ~~D~G~Y~C~~~~~-~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 164 (210)
T 3d9a_H 87 TEDTATYYCANWDG-D-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH 164 (210)
T ss_dssp GGGCEEEEEEETTS-S-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred cccCEEEEEEEecC-c-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence 99999999999983 2 22334567775 356665 3334457789999999999998 777689999999865321
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
..... ... ......+.|.|..+..+| |.|+|.|.|..|......
T Consensus 165 ~~~~~--~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 165 TFPAV--LQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp ECCCE--EET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EcCCc--cCC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 11111 111 001124679999998877 999999999999875543
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=164.19 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=124.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|...|.++.+.+|++|+|.|.+.+. .+.+.|+|++. .+. . ........|+.+.. ..+.++|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID 80 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence 46778899999999999999999874 45899999632 110 0 00111235777754 3466789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeeecCCeeeecCCCcEEEEEEccCCCC--CcEEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQGDTLYTTEDREIELECISANGKP--PAEITWI 169 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~~~i~W~ 169 (1011)
+++.+|+|.|+|.+.+.... ..+..+.|+|...+. ...+..+....+.+|+.+.|.|. +.+.| .+.+.|+
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~v~W~ 156 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPY---TFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT-ASGFNIKDTYMHWV 156 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSC---CBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE-EESSCGGGSCEEEE
T ss_pred CCChhhCEEEEEEEccCCce---eecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE-EcCccCCCCEEEEE
Confidence 99999999999999886321 133457788877542 22344556678899999999999 56666 4699999
Q ss_pred eCC--ceeee-------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 170 DGT--GTVMS-------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 170 k~~--~~l~~-------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
|++ ..+.. +..........++.... ..+|.|.+++.+|+|.|+|.|.+.
T Consensus 157 k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 157 KQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred EECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 962 22210 00000001112222211 257999999999999999999853
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=173.09 Aligned_cols=171 Identities=18% Similarity=0.313 Sum_probs=100.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--ee-------------------cCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--VV-------------------GNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~~-------------------~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. . .. ....+|+|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 44556667888899999999999999998889999986421 1 00 1123799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~ 675 (1011)
+|+|.|+|.|.|...........|.|.. +|.+.. +....+..|+.++|.|.+.|.+ .+..|+|+|||..+..+..
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999984222233334566654 677663 3333345799999999999964 4447999999998763200
Q ss_pred CCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 676 DDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 676 ~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.......+ .++ ..+.|.|..+..+|.|.|+|.|.|....
T Consensus 183 ~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 183 NSWTDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EEECCCCT--TTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred EecCCccC--CCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 00001100 111 3468999999999999999999998654
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=169.44 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=117.7
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC------------------------ceee----cCCCcEEEee
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------------------DKVV----GNSPNLTLLM 597 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~------------------------~~~~----~~~~~L~I~~ 597 (1011)
.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|... +... ..+.+|+|.+
T Consensus 29 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 107 (270)
T 3qib_D 29 KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQS 107 (270)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESS
T ss_pred eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECC
Confidence 3455567788999999999999865 778999998321 1111 1245899999
Q ss_pred cCCCCCEEEEEEEEecC---CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMG---FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSY 665 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~ 665 (1011)
++.+|+|.|.|.+.+.. .......+.|.|.. +|.+. .+....+..|+.++|.|.+.| .|.|..++|+|
T Consensus 108 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k 187 (270)
T 3qib_D 108 SEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 187 (270)
T ss_dssp CCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEE
Confidence 99999999999999622 22333455677765 56654 334444567999999999999 56665899999
Q ss_pred CCeEecccCCCCeEEec--CCcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 666 RGEEIGVGSSDDYSVLE--DPLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~--~~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
||..+............ ....++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 188 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 188 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp TTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 99998642100000000 000011 23678898888888 9999999999877554
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=163.84 Aligned_cols=169 Identities=17% Similarity=0.258 Sum_probs=119.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c-------------------------eee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D-------------------------KVV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~-------------------------~~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. . ... ....+|+|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 5567899999999999999877 78999998642 1 000 012389999
Q ss_pred ecCCCCCEEEEEEEEecCCC--ceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGFP--EVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
+++.+|+|.|+|.+.|.... .....+.|.|. .+|.+.. +....+.+|+.++|.|.+.|. |.|+.|+|++++.
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 166 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL 166 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence 99999999999999984211 22244677775 3566652 333456789999999999998 8777899999987
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.+......... .. ......+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus 167 ~~~~~~~~~~~--~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 167 SSGVRTVSSVL--QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp CTTEEECCCEE--ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ccceEEcCCcc--cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence 42100000000 00 001124789999988866 99999999999987776654
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=166.11 Aligned_cols=167 Identities=20% Similarity=0.304 Sum_probs=123.5
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc-------------------------eeec-----CCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD-------------------------KVVG-----NSP 591 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~-------------------------~~~~-----~~~ 591 (1011)
+|.+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.... .... ...
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 5667788889999999999999999984 6789999975311 1111 123
Q ss_pred cEEEeecCCCCCEEEEEEEEec-----------CCCceeeEEEEEEcCC---------------Ceee-cCCceeeecCC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVM-----------GFPEVGAEATVYLKGR---------------PTII-SHRTQFGIPGD 644 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~-----------~~~~~s~~~~l~V~~~---------------P~i~-~~~~~~v~~G~ 644 (1011)
+|+|.+++.+|+|.|.|.|.|. ........+.|.|..+ |.+. .+....+.+|+
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 5999999999999999999984 1334455677888763 3344 56677899999
Q ss_pred cEEEEEEEEecCC-CCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 645 TARVECSAFSIPP-PEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 645 ~v~L~C~~~g~p~-p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
+++|.|.+.+.|. + .+.|+|. +..+.. ....++.+.. .+...+|+|.+++.+|+|.|.|.|.
T Consensus 166 ~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~ 240 (256)
T 3juy_B 166 RATFSCRSSHSIRSR-RVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG----SGTDFTLTITRVEPEDFALYYCQVY 240 (256)
T ss_dssp CEEEEEEESSCCTTC-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred CEEEEEEECCCcCCe-eEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc----cCCEEEEEECCCCHhHCEEEEEEEe
Confidence 9999999999887 6 8999983 222210 1234555433 2345689999999999999999999
Q ss_pred cCCC
Q psy17146 712 NPYG 715 (1011)
Q Consensus 712 N~~G 715 (1011)
|..+
T Consensus 241 ~~~~ 244 (256)
T 3juy_B 241 GASS 244 (256)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9654
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=166.98 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=123.3
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-----------------------eec-----CCCcEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-----------------------VVG-----NSPNLTL 595 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-----------------------~~~-----~~~~L~I 595 (1011)
...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . ... ...+|+|
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 109 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL 109 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence 3456678899999999999999886 689999996421 0 010 1257999
Q ss_pred eecCCCCCEEEEEEEEecCCC-----ceeeEEEEEEcCCC---------------eee-cCCceeeecCCcEEEEEEEEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFP-----EVGAEATVYLKGRP---------------TII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~-----~~s~~~~l~V~~~P---------------~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
.+++.+|+|.|+|.|.|. .+ .....+.|.|..+| .+. .+....+.+|++++|.|.+.+
T Consensus 110 ~~v~~~DsG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTP-TGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp CSCCGGGCEEEEEEEECS-SSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred CcCChhhCEEEEEEeccC-CCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999984 22 12244577776643 344 345677999999999999999
Q ss_pred cCCCCeEEEEE--CCeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEE
Q psy17146 655 IPPPEKVTWSY--RGEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEI 721 (1011)
Q Consensus 655 ~p~p~~v~W~~--~g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~ 721 (1011)
.| + .+.|+| +|..+.. ....++.+.. .....+|+|.++..+|+|.|+|.|.|..+.. ....
T Consensus 189 ~~-~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt 262 (282)
T 1qok_A 189 SV-S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT 262 (282)
T ss_dssp CC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred CC-c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence 99 7 899999 5654421 1234555432 2335789999999999999999999865422 2334
Q ss_pred EEEec
Q psy17146 722 MLKPQ 726 (1011)
Q Consensus 722 ~l~V~ 726 (1011)
.|.|.
T Consensus 263 ~l~V~ 267 (282)
T 1qok_A 263 KLELK 267 (282)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55554
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=166.89 Aligned_cols=183 Identities=14% Similarity=0.218 Sum_probs=123.2
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCCcc-------------cCCCCcceEEeecCCCceeEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHR-------------NLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~~~-------------~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+.. |.++.+.+|++|+|.|.+.+ +...+.|+|......... .....+|+.+..+...+.++|
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM 81 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 3555 88999999999999999986 346899998542111000 011225888876666677899
Q ss_pred EEeecccCCCceEEEEEEeCC-----CCCcceeeeEEEEEEEc-C-----------CCCCeeecCCeeeecCCCcEEEEE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGI-----LGEPAIRSRFATLTVLV-P-----------PDPPRIVQGDTLYTTEDREIELEC 155 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~-----~~~~~~~s~~~~l~V~~-~-----------p~~~~i~~~~~~~v~eg~~v~L~C 155 (1011)
+|.+++.+|+|.|.|.+.+.. ..........+.|.|.. + ..++.+...+.+.+.+|++++|.|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C 161 (280)
T 3fku_X 82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTC 161 (280)
T ss_dssp EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEE
T ss_pred EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEE
Confidence 999999999999999998751 00112234456777765 1 124455555568899999999999
Q ss_pred EccCC-CC-CcEEEEEeCC--ceeee------------ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 156 ISANG-KP-PAEITWIDGT--GTVMS------------NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 156 ~~~~g-~P-~~~i~W~k~~--~~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
. +.+ .+ .+.+.|+|.. ..+.. ..++..... + ....|+|.+++.+|+|.|+|.+.+..
T Consensus 162 ~-~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~----~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 162 T-GNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS--G----NTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp E-CCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE--T----TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred E-ecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc--C----CEEEEEECCCCHHHCEEEEEEEecCC
Confidence 9 445 44 4789999832 22210 011111111 1 12469999999999999999999875
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=156.08 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=109.9
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCccc------CCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN------LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~------~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.+.+|++|+|.|.+..+.+.+.|+|++..+..... -...+|+.+. ....+|+|.+++.+|+|.|+|.
T Consensus 3 ~~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~DsG~Y~C~ 78 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDEDEYEME 78 (171)
T ss_dssp EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGCEEEEEE
T ss_pred cEEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhCceEEEE
Confidence 46789999999999999777779999999864421110 0112455552 1334899999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
+.+..+ +..+.|.|..++..|.+..... ...|.|. +.+.|.++++|+|++..+....
T Consensus 79 ~~n~~~------~~~~~L~V~~~~~~p~i~~~~~-------~~~L~C~-~~~~p~p~i~W~~~~~~l~~~~--------- 135 (171)
T 1ccz_A 79 SPNITD------TMKFFLYVLEMVSKPMIYWECS-------NATLTCE-VLEGTDVELKLYQGKEHLRSLR--------- 135 (171)
T ss_dssp CTTCCS------CEEEEEEEECCCCCCEEEEETT-------TTEEEEE-CSSCSSCEEEEEETTEEEEEES---------
T ss_pred EeCCCC------cEEEEEEEECcCCCCEEEEecC-------CcEEEEE-eCCCCCcEEEEEECCEECcCCc---------
Confidence 987532 5668899998877676642211 1379999 6677999999999887764321
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
. ..|.+. ...|.|.|+|.|.|..+..
T Consensus 136 ~------~~l~~~--~~~~~g~Y~C~a~N~~~~~ 161 (171)
T 1ccz_A 136 Q------KTMSYQ--WTNLRAPFKCKAVNRVSQE 161 (171)
T ss_dssp S------SEEEEE--CSCCSSCEEEEEEETTEEE
T ss_pred c------eEEEEe--ccCCCceEEEEEEcccCcc
Confidence 1 123333 4788999999999998865
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-16 Score=163.50 Aligned_cols=186 Identities=17% Similarity=0.255 Sum_probs=124.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-------CCeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-------TGVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-------~~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
.+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+. ..+. . .......+|+.+.. ..+.++
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~ 82 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDFT 82 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEEE
Confidence 3667888999999999999999999874 4689999963 2110 0 00001236777754 245679
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------------CCeeecCCeeeecCCCcEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------------PPRIVQGDTLYTTEDREIELE 154 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------------~~~i~~~~~~~v~eg~~v~L~ 154 (1011)
|+|.+++.+|+|.|+|.+.+... ......+.|+|..++. .+.+...+...+.+|+.++|.
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~ 159 (264)
T 2gjj_A 83 LTIGSVKAEDLAVYYCQQYSNYP---WTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKIS 159 (264)
T ss_dssp EEESSCCGGGCEEEEEEECSSSS---CEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEE
T ss_pred EEECCCCHHHCEEEEEEEecCCc---cEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEE
Confidence 99999999999999999987532 1233446788887642 233444555678999999999
Q ss_pred EEccCCCCC--cEEEEEeCC--cee--ee----c-eeEEEeeecCCceEE------EEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 155 CISANGKPP--AEITWIDGT--GTV--MS----N-VRVTEEASVDGRRTT------VKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 155 C~~~~g~P~--~~i~W~k~~--~~l--~~----~-~~~~~~~~~~~~~~~------~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
|. +.+.|. +.+.|+|+. ..+ +. . ..........+|... ...+|.|.+++.+|+|.|+|.|.|
T Consensus 160 C~-~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 238 (264)
T 2gjj_A 160 CK-ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSG 238 (264)
T ss_dssp EE-EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EE-EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEec
Confidence 99 556653 799999964 211 10 0 000000001122111 136899999999999999999998
Q ss_pred C
Q psy17146 218 T 218 (1011)
Q Consensus 218 ~ 218 (1011)
.
T Consensus 239 ~ 239 (264)
T 2gjj_A 239 N 239 (264)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-17 Score=164.12 Aligned_cols=148 Identities=17% Similarity=0.251 Sum_probs=109.2
Q ss_pred cccCCcEEEEEEeecCCCccEEEEEECCeecCCC-cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE-----
Q psy17146 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT----- 388 (1011)
Q Consensus 315 v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~----- 388 (1011)
+.+|+.++|.|.+ |.+ .+.|+|+|..+... .....|.|.+++.+ |+|.|+|.+.+.. +..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~-~i~W~k~g~~l~~~~~~~~~L~i~~v~~~-DsG~Y~C~~~~~~---s~~~~v~v~~~~~~ 86 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAK-NITWFKDGKMIGFLTEDKKKWNLGSNAKD-PRGMYQCKGSQNK---SKPLQVYYRMGSAD 86 (204)
T ss_dssp CCSSSEEEEEECS---CSS-EEEEEETTEEEEEEESSCCCEEEEEGGGC-CEEEEEEESSSSC---CCCEEEEEEC----
T ss_pred ecCCCeEEEEEcC---CCC-EEEEEECCEECCCCCCCCCeEEeCCCCcC-CCEEEEEEecCCC---CeeEEEEEEEeccc
Confidence 4689999999998 444 99999999998642 35678999999998 9999999975432 233455554
Q ss_pred ----------------------e----cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------ec
Q psy17146 389 ----------------------Y----GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VG 434 (1011)
Q Consensus 389 ----------------------~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--------~~ 434 (1011)
. ++.+...|. ....+|++++|.|. |.|.|.+.|+|++..+. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~ 163 (204)
T 1sy6_A 87 DAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS 163 (204)
T ss_dssp --------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE
T ss_pred cccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec
Confidence 0 122222222 22238999999999 78999999999985432 22
Q ss_pred cCCcEEEEee-ccCCCeEEEEEEEEcCCcceeeEEEEEEc
Q psy17146 435 NSPNLTLLMT-SDDLAGRYYCKASVMGFPEVGAEATVYLK 473 (1011)
Q Consensus 435 ~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~ 473 (1011)
..+.|.|.++ +.+|+|.|+|.|.|..+...+..+.|.+.
T Consensus 164 ~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~ 203 (204)
T 1sy6_A 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203 (204)
T ss_dssp ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence 4678999999 99999999999999777656677766653
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=156.28 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=109.5
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------------------e-cCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------------------V-GNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------------------~-~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+.+.+.+|++++|.|.+. .|.+.|.|+|++..+. . ..+++|+|.+++.+|+|.|+|.|.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 356789999999999985 4889999999874321 1 2458999999999999999999998
Q ss_pred cCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 613 MGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
. .+ +..+.|.|..+ |.+.... ...+|.|.+.+.|.| .++|+++|..+....
T Consensus 82 ~-~~--~~~~~L~V~~~~~~p~i~~~~-------~~~~L~C~~~~~p~p-~i~W~~~~~~l~~~~--------------- 135 (171)
T 1ccz_A 82 I-TD--TMKFFLYVLEMVSKPMIYWEC-------SNATLTCEVLEGTDV-ELKLYQGKEHLRSLR--------------- 135 (171)
T ss_dssp C-CS--CEEEEEEEECCCCCCEEEEET-------TTTEEEEECSSCSSC-EEEEEETTEEEEEES---------------
T ss_pred C-CC--cEEEEEEEECcCCCCEEEEec-------CCcEEEEEeCCCCCc-EEEEEECCEECcCCc---------------
Confidence 3 34 67788888765 3443211 113799999999999 999999999886311
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
...|.+.+ ..|+|.|+|.|.|.+|..+..+.|.
T Consensus 136 ~~~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 136 QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred ceEEEEec--cCCCceEEEEEEcccCcccceeEEe
Confidence 12344443 6789999999999999988777654
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=163.48 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=127.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCee--cC---C-c-----ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA--LG---P-H-----RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~--l~---~-~-----~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+...|..+.+.+|++|+|.|.+..+.+.+.|+|++.. +. . . ..-...+|+.+..+ ..+.++|+|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecCC
Confidence 4556889999999999999999777779999997521 10 0 0 00012368887654 2567899999999
Q ss_pred cCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeC
Q psy17146 99 LDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITWIDG 171 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~ 171 (1011)
.+|+|.|+|.+.+.... ........+.|+|... +.+|.+. .+....+.+|+.+.|.|.+.+..|.+ .+.|+|+
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 99999999999875210 0112233467888863 2344443 22334556899999999955445754 9999999
Q ss_pred CceeeeceeEEEe-eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 172 TGTVMSNVRVTEE-ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+..+..+...... .......+...+.|.|......| .|.|+|.|.|.....
T Consensus 161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 8887654432101 11122345556778887766554 688999999975443
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=160.56 Aligned_cols=187 Identities=17% Similarity=0.270 Sum_probs=128.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc---------------ccCCCCcceEEeecCCCceeEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH---------------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~---------------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
..|..+.+.+|++|+|.|.+.+. ...+.|+|........ ......+|+.+..+...+.++|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (221)
T 3m8o_H 5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ 84 (221)
T ss_dssp EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence 34677899999999999999863 4589999854211000 00112368888876666788999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC--cEEEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKPP--AEITWI 169 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~ 169 (1011)
|.+++.+|+|.|.|.+.+.... ......+.|.|. ..+.+|.+. ..+... .+|+.+.|.|.+..+.|. +.+.|+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~--~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 85 MNSLKSDDTAMYYCVIRGDVYN--RQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWS 161 (221)
T ss_dssp ECSCCGGGCEEEEEEEESCTTC--CCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred ECCCCHHHCEEEEEEEECCChh--heECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence 9999999999999999875311 123344678887 334455554 222222 689999999995544786 599999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+...... .........+...+.|.|.+...+|+|.|+|.|.|..+..
T Consensus 162 ~~g~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 162 ESGQGVTARNFP-PSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp CCSTTCEEEECC-CEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred ECCEECceEEcC-ceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 998877432111 1110233355566789999999999999999999987643
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=164.06 Aligned_cols=167 Identities=15% Similarity=0.233 Sum_probs=120.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC------CCeEEEEecC--Ccee------------------e---cCCCcEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP------APEITWIHED--SDKV------------------V---GNSPNLT 594 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p------~p~v~W~k~~--~~~~------------------~---~~~~~L~ 594 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .... . ....+|+
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 35566778889999999999999999988 6899999963 2110 0 1234899
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC--------------------eeecCCceeeecCCcEEEEEEEEe
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP--------------------TIISHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P--------------------~i~~~~~~~v~~G~~v~L~C~~~g 654 (1011)
|.+++.+|+|.|.|.|.|.........+.|.|..+| .+..+....+.+|++++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~ 164 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG 164 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence 999999999999999998322123344678887653 233444557899999999999999
Q ss_pred cCC--CCeEEEEECC--eE---ecc---c---------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 655 IPP--PEKVTWSYRG--EE---IGV---G---------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 655 ~p~--p~~v~W~~~g--~~---l~~---~---------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.|. + .+.|+|++ .. +.. . ...++.+..+ ......+|.|.+++.+|+|.|+|.|.|.
T Consensus 165 ~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 165 YSFTGY-FINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD--TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCGGGS-EEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CccCCe-EEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc--CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 875 6 89999973 22 110 0 1244544321 1234679999999999999999999996
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=153.78 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=112.2
Q ss_pred CCceeEEecCcEEEEEEEcC---CCCeeEEee--CCeecCCccc----CCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 34 PQDQTAVVGSRVTLPCRVID---KTGVLQWTK--DDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k--~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
++.+...+|++|+|.|.... +.+.|.|+| ++..+..... ....+|+.+..+ .+|+|.+++.+|+|.
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n-----gsL~I~~v~~~DsG~ 80 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-----GTLKIKHLKTDDQDI 80 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT-----SCEEECSCCGGGCEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC-----CCEEECCCChhhCEE
Confidence 45688899999999995432 345899999 8766521110 123468877633 279999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+..+. ...+..+.|.|..+...|.+.. .+..+.|.|. +.+.|.+.|.|++++..+ .+
T Consensus 81 Y~c~~~n~~g~--~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~-~~~~p~~~~~W~~~g~~l-~~------ 143 (182)
T 1hnf_A 81 YKVSIYDTKGK--NVLEKIFDLKIQERVSKPKISW-------TCINTTLTCE-VMNGTDPELNLYQDGKHL-KL------ 143 (182)
T ss_dssp EEEEEEETTSC--EEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEE-CSSCSSCEEEEEESSCEE-EE------
T ss_pred EEEEEEeCCCc--eeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeE-ccCCCCCEEEEEECCEEC-CC------
Confidence 99999985432 2234567889988766665532 2447899999 777889999999998876 21
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
... .|.+.. ..+|+|.|+|.|.|..+...
T Consensus 144 --~~~-------~i~~~~-~~~d~G~Y~C~a~N~~~~~~ 172 (182)
T 1hnf_A 144 --SQR-------VITHKW-TTSLSAKFKCTAGNKVSKES 172 (182)
T ss_dssp --ESS-------CEEEEC-CSCEEEEEEEEEECSSCEEE
T ss_pred --CCc-------EEEEec-ccCCCcEEEEEEEeCCCCcE
Confidence 011 233333 47899999999999988663
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-17 Score=167.75 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=115.1
Q ss_pred ecceeecCCceEE--EcCCCcEEEEEEEecCC---C-CeEEEEecCCceee--------c------CCCcEEEeecCCCC
Q psy17146 543 YGPRFRARPYSVQ--VDRGAGVNLLCDVDGNP---A-PEITWIHEDSDKVV--------G------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 543 ~~P~~~~~p~~~~--v~~G~~~~l~C~~~g~p---~-p~v~W~k~~~~~~~--------~------~~~~L~I~~v~~~d 602 (1011)
.+|.+...|.... +.+|++++|.|.+.|.+ . +.|+|+|++..+.. . ..+.|+|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 3455544444433 78999999999999873 3 79999999854321 0 12469999999999
Q ss_pred CEEEEEEEEecCCCc-eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPE-VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~-~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~ 677 (1011)
+|.|+|.|.|..... ....+.+ .+..+|.+.. +.......|+.++|.|.+.| .|.+..|+|+|||..+.......
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~ 167 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA 167 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence 999999999942222 2333322 5567887752 22222335999999999999 56656899999999875311111
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
+....+ ......+.|.|.....+|.|.|+|.|.|.....
T Consensus 168 ~~~~~~-gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 168 PVLDSD-GSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp CEECTT-SCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred cEECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 111111 000123457777666667999999999988653
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=163.72 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=114.0
Q ss_pred ecCCceEE-EcCCCcEEEEEEEecCC---C-CeEEEEecCCceeec--------C------CCcEEEeecCCCCCEEEEE
Q psy17146 548 RARPYSVQ-VDRGAGVNLLCDVDGNP---A-PEITWIHEDSDKVVG--------N------SPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 548 ~~~p~~~~-v~~G~~~~l~C~~~g~p---~-p~v~W~k~~~~~~~~--------~------~~~L~I~~v~~~d~G~Y~C 608 (1011)
...|.... +.+|++++|.|.+.|.+ . ..|.|+|++..+... . ...|+|.+++.+|+|.|+|
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 85 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 85 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence 34455444 78999999999999885 2 489999998543210 1 1469999999999999999
Q ss_pred EEEecCCCc--eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 609 KASVMGFPE--VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
.|.|. .+. ....+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||..+......++....
T Consensus 86 ~a~~~-~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~ 164 (207)
T 2vol_A 86 RVNSA-AFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT 164 (207)
T ss_dssp EEECT-TCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred EEEcc-CCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence 99993 333 2334444 5567888762 222223469999999999995 554589999999987532111111111
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
+ ......+.|.|.....+|.|.|+|.|.|....
T Consensus 165 ~-g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 165 D-GSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp T-SCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred C-CCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 1 00112356778777777899999999998764
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=163.52 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=121.4
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec----------------CC---------ceee----cCCCcEEEe
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE----------------DS---------DKVV----GNSPNLTLL 596 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~----------------~~---------~~~~----~~~~~L~I~ 596 (1011)
.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|. +. +... ....+|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 456677889999999999999999999999999992 11 1111 123479999
Q ss_pred ecCCCCCEEEEEEEEecC---CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEecCC-CCeEEEE
Q psy17146 597 MTSDDLAGRYYCKASVMG---FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSIPP-PEKVTWS 664 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~ 664 (1011)
+++.+|+|.|+|.|.|.. .......+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|+ +..++|+
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 162 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 162 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence 999999999999999732 11233455677753 56654 334455677999999999999765 3479999
Q ss_pred ECCeEecccCCCCeEEecCC--cCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 665 YRGEEIGVGSSDDYSVLEDP--LKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~~~--~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
|||..+.............. ..++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 99999864210000000000 0011 13569999988888 9999999999987654
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=165.99 Aligned_cols=187 Identities=17% Similarity=0.318 Sum_probs=124.3
Q ss_pred cCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCCc------c-------cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPH------R-------NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~~------~-------~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|+|.+.+ ....+.|+|....-... . .....+|+.+..+...+.++|+|.+
T Consensus 29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 108 (267)
T 3u1s_H 29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRG 108 (267)
T ss_dssp ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECS
T ss_pred eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence 445688999999999999975 34589999854211000 0 1112368888877666888999999
Q ss_pred cccCCCceEEEEEEeC------CC-----------CC-cc---eeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEE
Q psy17146 97 VMLDDDARYQCQVSTG------IL-----------GE-PA---IRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIEL 153 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~------~~-----------~~-~~---~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L 153 (1011)
++.+|+|.|.|.+.+. .. .. .. .....+.|+|. ..+.+|.+. ..+...+.+|+.+.|
T Consensus 109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l 188 (267)
T 3u1s_H 109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAAL 188 (267)
T ss_dssp CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEE
T ss_pred CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEE
Confidence 9999999999999620 00 00 00 12334677776 444556555 233334457999999
Q ss_pred EEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 154 ECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 154 ~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.|.+...+| .+.++| ++..+..+.............+...+.|.|.+...+| |.|+|.+.|..+..
T Consensus 189 ~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 255 (267)
T 3u1s_H 189 GCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 255 (267)
T ss_dssp EEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred EEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCc
Confidence 999666677 678999 5555433222211122233466677899999998889 99999999987654
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=152.74 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=110.5
Q ss_pred CceEEEcCCCcEEEEEEEe--cCCCCeEEEEe--cCCce----------------eecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVD--GNPAPEITWIH--EDSDK----------------VVGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~--g~p~p~v~W~k--~~~~~----------------~~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
.+.+...+|++++|.|... +.+.+.|.|+| ++..+ ....+++|+|.+++.+|+|.|+|.|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 3457789999999999542 35567999999 76433 2335679999999999999999999
Q ss_pred EecCCCc--eeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 611 SVMGFPE--VGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 611 ~n~~~~~--~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
.|. .+. ....+.|.|.++ |.|.. .+..++|+|.+.+.|.| .|.|+++|..+. ..
T Consensus 86 ~n~-~g~~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~~p~~-~~~W~~~g~~l~-~~----------- 144 (182)
T 1hnf_A 86 YDT-KGKNVLEKIFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDP-ELNLYQDGKHLK-LS----------- 144 (182)
T ss_dssp EET-TSCEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECSSCSSC-EEEEEESSCEEE-EE-----------
T ss_pred EeC-CCceeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeEccCCCCC-EEEEEECCEECC-CC-----------
Confidence 993 333 345677888653 44432 23478999999999988 999999999882 10
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
...|.+.. ..+|+|.|+|.|.|.+|..+....+.
T Consensus 145 ----~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 145 ----QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp ----SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred ----CcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence 12333333 47899999999999999888776653
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=157.28 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=121.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+. .+ ......+|+.+..+...+.++|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 4678899999999999999863 46899998742 110 00 001123688887765567789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|.|.+.+..... ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++|+|++..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~-~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 164 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYF-DYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS 164 (215)
T ss_dssp CGGGCEEEEEEECCSSSCS-CCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred CcccCEEEEEEEecCCccc-ceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence 9999999999998753111 1123346788874 33445443 23233457899999999955445887 9999998865
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+...... ....+ ..+...+.|. ....+| |.|+|.|.|..+..
T Consensus 165 ~~~~~~~--~~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 165 SDVHTFP--AVLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp CSCCBCC--CEEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTE
T ss_pred CceEecC--cccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCc
Confidence 4211110 01112 3444445566 444456 99999999998865
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=156.89 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=116.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------eec-----CCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VVG-----NSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~~-----~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|... .. ... ...+|+|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4467899999999999999876 67999998631 10 000 1247999999
Q ss_pred CCCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeeecCCceeeecCCcEEEEEEEEec-CC-CCeEEEEECCeEe
Q psy17146 599 SDDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTIISHRTQFGIPGDTARVECSAFSI-PP-PEKVTWSYRGEEI 670 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~-p~~v~W~~~g~~l 670 (1011)
+.+|+|.|.|.+.|.... .....+.|.|.. +|.|.......+..|+.++|.|.+.+. |. +..|+|+++|..+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence 999999999999983211 123446788864 466653334456789999999999988 76 2399999999875
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
..... ......+ ......+.|.|......|.|.|+|.|.|..|...
T Consensus 167 ~~~~~-~~~~~~~-g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 167 TTVNF-PPALASG-GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEC-CCEECSS-SCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEec-CceECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 31111 1111110 0001235799999999999999999999999754
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=163.17 Aligned_cols=187 Identities=17% Similarity=0.228 Sum_probs=125.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC----c---c----cCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP----H---R----NLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~----~---~----~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
....|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+.. . . .....+|+.+..+...+.++|+
T Consensus 9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 88 (261)
T 2xqy_G 9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ 88 (261)
T ss_dssp EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence 3445788999999999999999863 46899998742 1100 0 0 0012368888765445678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
|.+++.+|+|.|.|.+.+.... .......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+...+|.+ .+.|+|
T Consensus 89 I~~v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k 167 (261)
T 2xqy_G 89 LSSLTSEDSAVYYCGRLGYVYG-FDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 167 (261)
T ss_dssp ECSCCGGGCEEEEEEEECTTSS-EEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred EcCCCcccCeEEEEEEecCCCc-ceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence 9999999999999999875211 11223446788875 23344443 23333456899999999955446876 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
++..+....... .... ..+...+.|.|.+...+| |.|+|.|.|....
T Consensus 168 ~g~~~~~~~~~~--~~~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 168 GSLSSGVHTFPA--VLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp GTCCTTEEECCC--EEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred CCCcCceEecCc--eecC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 887642211100 1112 355566899999988888 9999999997654
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=152.28 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=109.5
Q ss_pred CceEEEcCCCcEEEEEEEec-CCCCeEEEEecC-Cc--------------------eee-cCCCcEEEeecCCCCCEEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVDG-NPAPEITWIHED-SD--------------------KVV-GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~-~~--------------------~~~-~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
...+.+.+|++++|.|.+.+ .+.+.|.|+|.+ .. ... ..+++|+|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 34678999999999999854 347899999942 11 112 34578999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
|.+.+. . .....+.|.|..+ |.+. ..+..++|.|.+ .| |.| .|.|+++|..+.. .
T Consensus 86 C~v~~~-~-~~~~~~~L~V~~~~~~P~i~-------~~~~~v~L~C~~~~g-p~p-~i~W~~~~~~l~~-------~--- 144 (180)
T 2dru_A 86 MRMLHE-T-EDQWKITMEVYEMVSKPMIY-------WECSNATLTCEVLEG-TDV-ELKLYQGKEHLRS-------L--- 144 (180)
T ss_dssp EEEESS-S-EEEEEEEEEEECCCCCCEEE-------EEGGGTEEEEECSSC-TTC-EEEEEETTEEEEE-------E---
T ss_pred EEEEcC-C-eEEEEEEEEEECCCCCCEEE-------ecCCCEEEEEEeCCC-CCC-EEEEEECCeECcC-------C---
Confidence 999873 3 6677788888765 3332 234679999999 55 888 9999999998751 0
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...+|.+.. .+|+|.|+|.|.|.+|..+....+
T Consensus 145 -----~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 145 -----RQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp -----SSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred -----CCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 024566633 789999999999999988776644
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=155.85 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=117.5
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------eec-----CCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VVG-----NSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~~-----~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+.. .. ... ...+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 3467899999999999999876 47899998641 11 000 1247999999
Q ss_pred CCCCCEEEEEEEEecCC---C--ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEE-C
Q psy17146 599 SDDLAGRYYCKASVMGF---P--EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSY-R 666 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~---~--~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~-~ 666 (1011)
+.+|+|.|.|.+.|... . .....+.|.|.. +|.|.. .+...+..|+.++|.|.+.|. |.|..|+|++ |
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN 166 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence 99999999999998321 1 122345788863 566652 223346789999999999988 7666899999 9
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCC--CCCEEEEEEEEcCCCCeEEEE
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH--DHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|..+....... ....+ ......+.|.|..... +|.|.|+|.|.|..|.....+
T Consensus 167 g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 167 NSDISSTRGFP-SVLRG-GKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp SCBCSCEEECC-CEEET-TEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CCccceeEECC-ccccC-CeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 98875200000 00000 0011246799988876 789999999999999877655
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=160.77 Aligned_cols=168 Identities=19% Similarity=0.283 Sum_probs=115.5
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce-----------------------ee-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK-----------------------VV-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~-----------------------~~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ... .. ....+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4467899999999999999887 7899999864 111 00 11357999999
Q ss_pred CCCCCEEEEEEEEecCC-----C--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEE
Q psy17146 599 SDDLAGRYYCKASVMGF-----P--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSY 665 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~-----~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~ 665 (1011)
+.+|+|.|.|.+.|... . .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|..|+|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 166 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS 166 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence 99999999999998321 1 122345777764 46554 2222236789999999999987 7666899999
Q ss_pred CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+|..+........ ...+ ......+.|.|.++..+| |.|+|.|.|..+......
T Consensus 167 ~~~~~~~~~~~~~-~~~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 219 (225)
T 1op3_H 167 GALTSGVHTFPAV-LQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 219 (225)
T ss_dssp TSCCTTCEECCCE-ECTT-SCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEEE
T ss_pred CCCcCCeEecCce-eCCC-CCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEEE
Confidence 9876421101110 1010 001124679999998888 999999999877654433
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=159.23 Aligned_cols=187 Identities=16% Similarity=0.216 Sum_probs=122.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCee--EEeeCCeecCC---------------cccCCCCcceEEeecCCCceeEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVL--QWTKDDFALGP---------------HRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v--~W~k~~~~l~~---------------~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.|..+.+.+|++|+|.|.+.+. ...+ .|+|....... .......+|+.+..+...+.++|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 85 (232)
T 3qhz_H 6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL 85 (232)
T ss_dssp EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence 4566889999999999999762 2345 99985321100 00011236898887777788999
Q ss_pred EEeecccCCCceEEEEEEeCCCC----CcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILG----EPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAE 165 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~----~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~ 165 (1011)
+|.+++.+|+|.|.|.+.+.... ........+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+....| ...
T Consensus 86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~ 165 (232)
T 3qhz_H 86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (232)
T ss_dssp EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence 99999999999999999864210 01223445678887 344556665 344445667999999999655566 457
Q ss_pred EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|+|++..+...... ........+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 v~W~~~g~~~~~~~~~--~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~ 219 (232)
T 3qhz_H 166 VSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 219 (232)
T ss_dssp EEEGGGTBCTTEEECC--CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred EEEEECCEecceeecc--ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCc
Confidence 8899988644221111 112223355666889999999999 99999999987755
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=163.23 Aligned_cols=168 Identities=14% Similarity=0.259 Sum_probs=118.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLT 594 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~ 594 (1011)
..+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+... . .. ....+|+
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 93 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK 93 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence 345667778888999999999999999887 589999986421 1 00 1234799
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC------------------------eeecCCceeeecCCcEEEEE
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP------------------------TIISHRTQFGIPGDTARVEC 650 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P------------------------~i~~~~~~~v~~G~~v~L~C 650 (1011)
|.+++.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C 173 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC 173 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence 999999999999999998422123344566665432 12334566789999999999
Q ss_pred EEEecCC--CCeEEEEEC--CeEec-----------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 651 SAFSIPP--PEKVTWSYR--GEEIG-----------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 651 ~~~g~p~--p~~v~W~~~--g~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+.+.|. + .+.|+|+ +..+. .....++.+..+. ......|.|.+++.+|+|.|+|.
T Consensus 174 ~~~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~ 250 (268)
T 1x9q_A 174 VTSGFTFGHY-WMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD--SKSSVYLQMNNLRVEDTGIYYCT 250 (268)
T ss_dssp EEESSCGGGC-EEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEE
T ss_pred EecCcccccc-EEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC--CCCEEEEEECCCCHHHCEEEEEE
Confidence 9998864 6 8999985 33221 0123456654321 12357899999999999999999
Q ss_pred EEcC
Q psy17146 710 VSNP 713 (1011)
Q Consensus 710 a~N~ 713 (1011)
|.|.
T Consensus 251 a~~~ 254 (268)
T 1x9q_A 251 GASY 254 (268)
T ss_dssp EEET
T ss_pred EccC
Confidence 9985
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=162.87 Aligned_cols=172 Identities=17% Similarity=0.271 Sum_probs=121.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC------------------------Cceeec----CCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------------------SDKVVG----NSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~------------------------~~~~~~----~~~~L~I 595 (1011)
.+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|.. .+.... .+.+|+|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 45677788899999999999999987 678899999932 111111 1457999
Q ss_pred eecCCCCCEEEEEEEEec-CCCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEecCC-CCeEEEEE
Q psy17146 596 LMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSY 665 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~ 665 (1011)
.+++.+|+|.|+|.+.|. ..........|.|.. +|.+. .+....+..|+.++|.|.+.|.++ +..++|++
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 999999999999999973 233344556677765 56654 344445667999999999999655 44799999
Q ss_pred CCeEecccCCCCeEE--ecC--CcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 666 RGEEIGVGSSDDYSV--LED--PLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~--~~~--~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
||+.+.... +... ... ...++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 185 ~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 185 NGKEVHSGV--CTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 243 (268)
T ss_dssp SSSEECTTE--EECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CCEECCCCe--EeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence 999986321 1000 000 00011 23678888888787 9999999999876543
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-17 Score=194.31 Aligned_cols=285 Identities=15% Similarity=0.087 Sum_probs=187.4
Q ss_pred ecCCceEEEcCCCcEEEEEEEe-------cCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVD-------GNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~-------g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
...|++..+..|++++|.|.+. +.+.+.|.|++++..+. ....+.|+|.++...|++ |+|.+...
T Consensus 7 ~i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~ 85 (589)
T 3l5h_A 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTF 85 (589)
T ss_dssp CCSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred EEecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccC
Confidence 3457788899999999999998 66778999999985432 233568999999988865 77888642
Q ss_pred C-CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc-------
Q psy17146 614 G-FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL------- 685 (1011)
Q Consensus 614 ~-~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~------- 685 (1011)
+ .......+.|.|..+| +....|.|...+.... .+.|......- ....|.+.....
T Consensus 86 ~~~~~~~~~~~l~v~~pP------------~~P~nl~c~~~~~~~~-~~~W~~~~~~~---~~~~y~l~~~~~~~~~~~c 149 (589)
T 3l5h_A 86 GQLEQNVYGITIISGLPP------------EKPKNLSCIVNEGKKM-RCEWDGGRETH---LETNFTLKSEWATHKFADC 149 (589)
T ss_dssp TCC-CCCCCCCCCC-CCC------------CCCEEEEEEEETTSCE-EEEEECCSCCS---SCEEEEECCBCSSSBCCCE
T ss_pred CCcccEEEeEEEeccCCC------------CCCEeeEEEECCCceE-EEEECCCCcCC---cCceEEEEEEEcCCCcccC
Confidence 2 2223344455555555 3556799988776554 88897743210 111222221000
Q ss_pred --CccceeEEEEc-CCCCCCCEEEEEEEEcCCCCe-EEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 686 --KEGIKSTLIIR-ESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 686 --~~~~~~~L~I~-~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
..+......|. ++.......|+|.|.|..|.. +..+.+.... ..++
T Consensus 150 ~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~------------------------------~~~p 199 (589)
T 3l5h_A 150 KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY------------------------------KVKP 199 (589)
T ss_dssp ECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGG------------------------------SEEC
T ss_pred CCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEcccc------------------------------EEEc
Confidence 01112334444 566677788999999999975 2233332211 1244
Q ss_pred CCCCCCcc--cccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c-
Q psy17146 762 PPPGNGIE--HHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A- 811 (1011)
Q Consensus 762 ~~p~~~~~--~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A- 811 (1011)
.||.++.+ ...+.+++.++| ++.+.+.+|.+|.|+++.... .|+++|.| |
T Consensus 200 ~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 279 (589)
T 3l5h_A 200 NPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 279 (589)
T ss_dssp CCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEE
T ss_pred CCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEE
Confidence 58899888 568889999999 666667799999999986432 78889999 4
Q ss_pred --CCCCCCC----cccccccccccccccccCCcccc-cccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 812 --GHDSETG----SESVHTRIGVPLAGPVPMDQRYH-RYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 812 --~G~g~~s----s~~~~t~~~~P~~~P~~~~~~~~-~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
.|.|.+| ...++|.+++|..+|..+..... ...+.+...++|+|+++...||.+.||+|+|+..+...
T Consensus 280 ~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~ 354 (589)
T 3l5h_A 280 KEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL 354 (589)
T ss_dssp ESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCC
T ss_pred eCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCc
Confidence 6777765 33478999999988874321110 00123344569999999999999999999998766543
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=161.94 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=110.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC---Ccee---------------------------ecCCCcE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---SDKV---------------------------VGNSPNL 593 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~---~~~~---------------------------~~~~~~L 593 (1011)
+|.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|.. .... .....+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 466777888999999999999999999999999999832 1100 1123469
Q ss_pred EEeecCCCCCEEEEEEEEecCCC---ceeeEEEEEEcCC-----------------Ceee-cCCceeeecCCcEEEEEEE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFP---EVGAEATVYLKGR-----------------PTII-SHRTQFGIPGDTARVECSA 652 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~~-----------------P~i~-~~~~~~v~~G~~v~L~C~~ 652 (1011)
+|.+++.+|+|.|+|.|.|. .+ .....+.|.|..+ |.+. .+....+.+|++++|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQ-NYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEEECT-TSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEEeeC-CccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999983 32 3445566777653 4555 4456789999999999999
Q ss_pred Eec-CCCCeEEEEECC--eEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 653 FSI-PPPEKVTWSYRG--EEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 653 ~g~-p~p~~v~W~~~g--~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+. |.+ .+.|+|++ ..+.. ....++.+..+ .......|+|.+++.+|+|.|.|.|.+.
T Consensus 161 ~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 161 ETSWWSY-YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFK--KAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp ECCCSSC-EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCB--GGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CCccCCc-eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEc--CcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 886 667 99999853 11110 01245554421 1233567999999999999999999864
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=160.91 Aligned_cols=169 Identities=17% Similarity=0.271 Sum_probs=116.2
Q ss_pred CceEEEcCCCcEEEEEEEecCCC----CeEEEEecC--Cce----------------------eec-----CCCcEEEee
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPA----PEITWIHED--SDK----------------------VVG-----NSPNLTLLM 597 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~----p~v~W~k~~--~~~----------------------~~~-----~~~~L~I~~ 597 (1011)
|..+.+.+|++++|.|.+.+.+. +.+.|+|+. ... ... ...+|+|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 45678999999999999999875 899999863 110 000 125899999
Q ss_pred cCCCCCEEEEEEEEecCC------C--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEE
Q psy17146 598 TSDDLAGRYYCKASVMGF------P--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTW 663 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~------~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W 663 (1011)
++.+|+|.|.|.+.|... . .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|+.|+|
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W 166 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 166 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence 999999999999998321 1 122346788863 56665 2333446789999999999987 77768999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
+++|..+.... ...+... ......+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus 167 ~~~~~~~~~~~--~~~~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 167 NSGSLSSGVHT--FPAVLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp GGGTCCTTEEE--EEEEEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eeCCcccCceE--cCceeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 99987642110 0111110 001124679999988866 99999999999987665554
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=161.31 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=118.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+....... ......+|+.+.. ..+.++|+
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~ 93 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFTLK 93 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEE
T ss_pred ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEEEE
Confidence 667888999999999999999999874 3689999864211000 0001236777654 23567999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------CC---------------eeecCCeeeecCCCcEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------PP---------------RIVQGDTLYTTEDREIE 152 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------~~---------------~i~~~~~~~v~eg~~v~ 152 (1011)
|.+++.+|+|.|+|.+.+... ......+.|+|...+. +| .+..+....+.+|+.++
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~ 170 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVP---WTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK 170 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSS---CEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred ECCCChhHCEEEEEEEecCCC---ceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence 999999999999999987532 1223346777776432 11 23334466789999999
Q ss_pred EEEEccCCCC--CcEEEEEeCC--ceeeeceeE---------EEeeecCCceEEE------EEEEEEeeccCcCCcEEEE
Q psy17146 153 LECISANGKP--PAEITWIDGT--GTVMSNVRV---------TEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTC 213 (1011)
Q Consensus 153 L~C~~~~g~P--~~~i~W~k~~--~~l~~~~~~---------~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C 213 (1011)
|.|. +.+.| .+.+.|+|+. ..+..-..+ .......++.... ..+|.|.+++.+|+|.|+|
T Consensus 171 L~C~-~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 249 (268)
T 1x9q_A 171 LSCV-TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYC 249 (268)
T ss_dssp EEEE-EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EEEE-ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence 9999 55655 3799999853 221100000 0000112232221 2579999999999999999
Q ss_pred EEEeC
Q psy17146 214 QAQNT 218 (1011)
Q Consensus 214 ~a~n~ 218 (1011)
.|.+.
T Consensus 250 ~a~~~ 254 (268)
T 1x9q_A 250 TGASY 254 (268)
T ss_dssp EEEET
T ss_pred EEccC
Confidence 99874
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=157.26 Aligned_cols=187 Identities=16% Similarity=0.269 Sum_probs=126.5
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecC------Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALG------PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~------~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....-. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (230)
T 3n9g_H 6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS 85 (230)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 3557899999999999999752 34799998532110 00 00112368988887777889999999
Q ss_pred cccCCCceEEEEEEeCCC----CCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEEE
Q psy17146 97 VMLDDDARYQCQVSTGIL----GEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITWI 169 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~----~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~ 169 (1011)
++.+|+|.|.|.+.+... +........+.|+|.. ...+|.+. ..+...+.+|+.+.|.|.+....| .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 999999999999987421 1111233456788863 33445554 234444568999999999655567 568999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 215 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 215 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTE
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCc
Confidence 5554433222211122233456667899999999999 99999999987754
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=158.65 Aligned_cols=174 Identities=21% Similarity=0.269 Sum_probs=126.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.| ..|.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ..+.|.|.++..+|+|.|+|.|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 56777 5777899999999999999999999999999998544322 24689999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe----cCCC-CeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS----IPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g----~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
| ..+..+..+.|.|..+|........ ...+..+.|.|.... .|.. ..+.|.+++..... ...+.+..
T Consensus 97 n-~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~--~~~~~~~~---- 168 (215)
T 3mtr_A 97 N-RIGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH--SKWYDAKE---- 168 (215)
T ss_dssp C-SSCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE--EEEEEHHH----
T ss_pred E-CCCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc--cccccccc----
Confidence 9 6778888999999887764322111 345678899997422 2222 14788887654210 00001100
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
......|.|.++...|.|.|+|.|.|.+|....+..+.+
T Consensus 169 ~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v 207 (215)
T 3mtr_A 169 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 207 (215)
T ss_dssp HHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred ccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceee
Confidence 112268999999999999999999999997766555554
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=158.30 Aligned_cols=169 Identities=15% Similarity=0.259 Sum_probs=121.5
Q ss_pred EEEeeCCcccccCCcEEEEEEeecCC-CccEEEEEECC--ee--cC----------------C--------CcCccEEEE
Q psy17146 306 QVSVIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QP--VP----------------A--------AASATELYL 356 (1011)
Q Consensus 306 ~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~--l~----------------~--------~~~~~~L~I 356 (1011)
.+....+..+.+|++++|.|.+.+.+ ....+.|+|.. .. +. . ......|.|
T Consensus 11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 34445677899999999999999854 23499999832 11 10 0 012237999
Q ss_pred eecccccCCcEEEEEEEcCCc----cceeeEEEEEEec--------------ceEeeCCCceEecCCCcEEEEeecCCCC
Q psy17146 357 TNITRHQHDSIVKCEVHNDVG----KSEDSETLDVTYG--------------PRFRARPYSVQVDRGAGVNLLCDVDGNP 418 (1011)
Q Consensus 357 ~~~~~~~d~G~Y~C~a~n~~g----~~~~s~~l~V~~~--------------P~~~~~p~~~~v~~G~~v~l~C~~~g~p 418 (1011)
.+++.+ |+|.|+|.|.|..+ .....+.|.|..+ |.+...+....+.+|++++|.|.+.+.|
T Consensus 91 ~~v~~~-DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~ 169 (257)
T 3gkz_A 91 KSVSSE-DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSV 169 (257)
T ss_dssp CSCCGG-GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCC
T ss_pred CCCChh-hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCc
Confidence 999998 99999999999732 2235567888765 5677778888999999999999999988
Q ss_pred CC-ceEEEeCC--Ccee---------------------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcC
Q psy17146 419 AP-EITWIHED--SDKV---------------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 474 (1011)
Q Consensus 419 ~p-~v~W~k~~--~~~~---------------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~ 474 (1011)
.+ .+.|+|.. .... ......|.|.+++.+|+|.|+|.|.|........-..|.|..
T Consensus 170 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 170 SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 87 99999953 2111 011234999999999999999999975544444555666654
Q ss_pred C
Q psy17146 475 R 475 (1011)
Q Consensus 475 ~ 475 (1011)
.
T Consensus 250 ~ 250 (257)
T 3gkz_A 250 A 250 (257)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=162.48 Aligned_cols=187 Identities=14% Similarity=0.214 Sum_probs=112.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC----Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG----PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~----~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|.... +. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 4667899999999999999863 468999986421 10 00 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCC---------CcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-
Q psy17146 97 VMLDDDARYQCQVSTGILG---------EPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA- 164 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~---------~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~- 164 (1011)
++.+|+|.|.|.+.+..+. ........+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+.+|.+
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence 9999999999999875320 001223346788876 334455532 2233456899999999955456877
Q ss_pred EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 165 EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 165 ~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.++|+|++..+... ........++ .+...+.|.|.+...+| |.|+|.|.|.....
T Consensus 166 ~v~W~k~g~~~~~~-~~~~~~~~~g-~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~ 220 (257)
T 3bn9_D 166 TVSWNSGALTSGVH-TFPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 220 (257)
T ss_dssp EEEETTTTCCSSCE-ECCCEECTTS-CEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred EEEEeeCCCcCCcE-ecCCeEcCCC-CEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence 99999998763211 1100112233 44556889999988888 99999999975543
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=157.31 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=119.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC------------------------Cceee----cCCCcEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------------------SDKVV----GNSPNLTLL 596 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~------------------------~~~~~----~~~~~L~I~ 596 (1011)
+.+...|..+.+.+|++++|.| ..+.+.+.+.|+|.. .+... ....+|+|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 4566778889999999999999 778888999999821 11111 113489999
Q ss_pred ecCCCCCEEEEEEEEecC---CCceeeEEEEEEc------CCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEE
Q psy17146 597 MTSDDLAGRYYCKASVMG---FPEVGAEATVYLK------GRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWS 664 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~------~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~ 664 (1011)
+++.+|+|.|+|.+.+.. .......+.|.|. .+|.+. .+....+..|+.++|.|.+.|. |.+..+.|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 999999999999999621 2334455667776 366654 3344456679999999999995 445589999
Q ss_pred ECCeEecccCCCCeEEec--CCc--Ccc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 665 YRGEEIGVGSSDDYSVLE--DPL--KEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~--~~~--~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
+||..+.... +..... ... .++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 162 ~~g~~l~~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 162 VNGKEVHSGV--CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp ETTEEECTTE--EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCc--ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 9999986421 110000 000 011 23569999988888 9999999999876544
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=161.10 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=124.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC-----Cccc------CCCCc-ceEEeecCCCceeEEEEee
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG-----PHRN------LSGFD-RYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~-----~~~~------~~~~~-r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...|..+.+.+|++|+|.|.+.+ +...+.|+|...... .... ....+ |+.+..+... . |+|.+
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~-L~I~~ 80 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--E-LRLQV 80 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS--C-CEEEE
T ss_pred EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC--e-EEEcc
Confidence 455678899999999999999876 556899998431110 0000 00112 7777654422 2 99999
Q ss_pred cccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITW 168 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W 168 (1011)
++.+|+|.|+|.+.+...+ ........+.|+|... ..+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++|
T Consensus 81 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W 160 (253)
T 3to4_D 81 ANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (253)
T ss_dssp ESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence 9999999999999864321 1123344567888752 2334332 22233344678999999955557877 8999
Q ss_pred EeCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 169 IDGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+|++..+..+........ .....+...+.|.|.+...+| .|.|+|.|.|.....
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~ 220 (253)
T 3to4_D 161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (253)
T ss_dssp EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence 999888765443221111 023356666789999988888 789999999975443
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-14 Score=142.30 Aligned_cols=228 Identities=15% Similarity=0.228 Sum_probs=152.4
Q ss_pred eecCCCcEEEEEEccCCCC---CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 144 YTTEDREIELECISANGKP---PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P---~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.+..|+.++|+|.+..|.| ...++|+||+..+.. .. ..|.|......|+|.|+|.+.+..|
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT------~tLti~s~t~sdSG~YqCvVTDa~G 76 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NT------ATLTVADATSENAGSYKVTVQDTDT 76 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CS------SEEEESSCCGGGCEEEEEEEEETTT
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------Cc------ceEEeeeccccCCeEEEEEEEECCC
Confidence 3567999999999888988 568999999865422 11 3799999999999999999999888
Q ss_pred CceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcE
Q psy17146 221 RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSI 300 (1011)
Q Consensus 221 ~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~ 300 (1011)
....+..+.|.....+ .+....+.
T Consensus 77 cs~tSs~VtVT~~a~l--~i~it~P~------------------------------------------------------ 100 (304)
T 3shs_A 77 MTSVESEVFLMEEAEL--IVNITEPQ------------------------------------------------------ 100 (304)
T ss_dssp CCEEECCCEEECBCCE--EEEESSCS------------------------------------------------------
T ss_pred CeeeeeeEEEeccCce--eEEecCCC------------------------------------------------------
Confidence 7655554444432222 22221111
Q ss_pred EEEEEEEEeeCCcccccCCcEEEEEEe--ecC-CC----ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEE
Q psy17146 301 VKCEVQVSVIGSNRLVEGTDVRLYCKA--EAN-PS----HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVH 373 (1011)
Q Consensus 301 ~~c~~~~~~~~~~~v~~g~~v~l~C~~--~~~-p~----~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~ 373 (1011)
+..+..|+.+.|.+.+ .+. ++ ..+|+|+||+..+.. ...|.+...... ++|.|+|++.
T Consensus 101 -----------s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg---Aq~lT~sS~Tat-eaG~YtV~VT 165 (304)
T 3shs_A 101 -----------HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTAD-KNGVYTVKVW 165 (304)
T ss_dssp -----------EEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES---SSEEEECSCCGG-GCEEEEEEEE
T ss_pred -----------ceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC---ccccceeeEEec-CCeEEEEEEE
Confidence 1112334556666655 332 21 369999999998854 446777777776 9999999999
Q ss_pred cCCccc--eeeEEEEEEecceEeeCCCceEecCCCcEEEEeec--------CCCCCC--ceEEEeCCCce----------
Q psy17146 374 NDVGKS--EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV--------DGNPAP--EITWIHEDSDK---------- 431 (1011)
Q Consensus 374 n~~g~~--~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~--------~g~p~p--~v~W~k~~~~~---------- 431 (1011)
|..+.. +.++.+.+...+.-........+..|+.+.|...+ +|.|.. ++.||......
T Consensus 166 n~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (304)
T 3shs_A 166 GESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEV 245 (304)
T ss_dssp SSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSS
T ss_pred cCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhh
Confidence 998754 44555555444443344556678889998887654 233332 57788654211
Q ss_pred -------eeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 432 -------VVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 432 -------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.....+.|.-....-+|...|.|+|.-
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 246 GEALEGFSITPDGHLFKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp EECGGGEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred hhhhccceeCCCcceeecccccccchheeeHHHH
Confidence 123356677777888999999999973
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=159.66 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=128.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCee--c---C---Cccc---CCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA--L---G---PHRN---LSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~--l---~---~~~~---~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.+...|..+.+.+|++|+|.|.+..+.+.+.|+|+... . . .... -...+|+.+..+. .+.++|+|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK-KESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS-TTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecC-CCEEEEEECc
Confidence 346777899999999999999999777779999986421 1 0 0000 0123688776542 4567899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEe
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWID 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k 170 (1011)
++.+|+|.|+|.+.+.... .......+.|+|... +.+|.+. .+....+.+|+.+.|.|.+.+.+|. +.++|+|
T Consensus 83 v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 161 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSY-EQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 161 (252)
T ss_dssp CCSCCCEEEEEEEESSTTS-CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CChhhCEEEEEEEecCCcc-ceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE
Confidence 9999999999999874211 111223356888752 2344443 2223345579999999995544576 5999999
Q ss_pred CCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+...... .......+...+.|.|.+.... |.|.|+|.|.|.....
T Consensus 162 ~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 162 NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp TTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 98877654332100 0112335666788999887664 6889999999986654
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-16 Score=159.08 Aligned_cols=186 Identities=13% Similarity=0.195 Sum_probs=117.9
Q ss_pred eccceeecCCcee--EEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCccc----CCCCcceEEeecCCCceeEEEE
Q psy17146 26 REQKFAMEPQDQT--AVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 26 ~~p~~~~~p~~~~--v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+|.+.+.|.... +.+|++++|.|.+.+. .+.|.|+|++..+..... .....++. ...+|+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I 80 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR-------VVSTLPI 80 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE-------EEEEEEC
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEE-------EEEEEEE
Confidence 3566666666555 8999999999999863 258999999976532110 00001111 2347999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
.+++.+|+|.|+|.+.+..... .....+.+ +.....+|.+. ..+.....+|+.+.|.|.+.+.+|.+ +++|+|++
T Consensus 81 ~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 157 (218)
T 2rgs_A 81 QHQDWMSGKEFKCKVNNKDLPS--PIERTISK-IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNG 157 (218)
T ss_dssp CHHHHHTTCCEEEEEEETTCSS--CEEEEECC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred cHHHcCCCCeEEEEEECCcCCC--cceEEEee-cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECC
Confidence 9999999999999999864321 01111211 01122334432 22222223599999999944347875 99999999
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+............++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 158 ~~~~~~~~~~~~~~~~g-t~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 158 HTEENYKDTAPVLDSDG-SYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EEECCEEECCCEECTTS-CEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EeccCceecccEECCCC-CEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 87743222211122333 55666788888887788999999999987654
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=156.50 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=120.2
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCC--ce--e---------------------ec-----CCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDS--DK--V---------------------VG-----NSPN 592 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~--~~--~---------------------~~-----~~~~ 592 (1011)
+.+...|..+.+.+|++++|.|.+.+. +.+.+.|+|+.. .. . .. ...+
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 346667888999999999999999886 678999998531 11 0 00 1347
Q ss_pred EEEeecCCCCCEEEEEEEEecCCC------ceeeEEEEEEcC-------CCee--ecCCceeeecCCcEEEEEEEEec-C
Q psy17146 593 LTLLMTSDDLAGRYYCKASVMGFP------EVGAEATVYLKG-------RPTI--ISHRTQFGIPGDTARVECSAFSI-P 656 (1011)
Q Consensus 593 L~I~~v~~~d~G~Y~C~a~n~~~~------~~s~~~~l~V~~-------~P~i--~~~~~~~v~~G~~v~L~C~~~g~-p 656 (1011)
|+|.+++.+|+|.|.|.+.+...+ .....+.|.|.. +|.+ ..+....+..|+.++|.|.+.|. |
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P 161 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP 161 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence 999999999999999999984211 122345777765 2332 23334456679999999999987 6
Q ss_pred CCCeEEEEECCe-EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 657 PPEKVTWSYRGE-EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 657 ~p~~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+..|+|+++|. .+......... ..+ ......+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus 162 ~~~~v~W~~~~~~~l~~~~~~~~~-~~~-~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 162 DVIKIHWEEKKSNTILGSQEGNTM-KTN-DTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CCEEEEEEESSSCCCCCCEECCCE-ECS-SSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCeEEEEEcCCCEeecCcccccee-cCC-CcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 533899999987 55321111111 111 0011246899988775 5 9999999999997655455544
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=158.38 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=118.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-----------------------ceee----cCCCcEEEee
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-----------------------DKVV----GNSPNLTLLM 597 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-----------------------~~~~----~~~~~L~I~~ 597 (1011)
+.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|... +... ....+|+|.+
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 81 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 81 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence 34556678899999999999999976 788999999321 1111 1234799999
Q ss_pred cCCCCCEEEEEEEEe--cCCCceeeEEEEEEc------CCCeee--cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEEC
Q psy17146 598 TSDDLAGRYYCKASV--MGFPEVGAEATVYLK------GRPTII--SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYR 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n--~~~~~~s~~~~l~V~------~~P~i~--~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~ 666 (1011)
++.+|+|.|+|.+.+ .........+.|.|. .+|.+. .+....+..|+.++|.|.+.| .|.+..+.|++|
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999983 222334445566665 456655 234445667999999999999 555657999999
Q ss_pred CeEecccCCC--CeEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 667 GEEIGVGSSD--DYSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 667 g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
|+.+...... ......+ ......+.|.|.....+| .|.|+|.|.|......
T Consensus 162 g~~l~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~ 215 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESN-YSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 215 (240)
T ss_dssp TEEECTTEEECSSCEEEET-TEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CEECcCcEecCCceeeCCC-CCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence 9998632110 0011110 001123569999999888 6799999999876543
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=157.40 Aligned_cols=182 Identities=15% Similarity=0.237 Sum_probs=115.2
Q ss_pred eeecCCcee-EEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCccc-CC---CCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQT-AVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRN-LS---GFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~-v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~-~~---~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|.... +.+|++++|.|.+.+. ...+.|+|++..+..... .. ...++. ...+|+|.+++.
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~ 77 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR-------SVSELPIMHQDW 77 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE-------EEEEEECCHHHH
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE-------EEEEEEEehhHc
Confidence 444566555 8999999999999863 138999999976532110 00 011121 234799999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeee
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMS 177 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~ 177 (1011)
+|+|.|+|.+.+..... ..+..+.+.+ ....+|.+. ........+|+.+.|.|.+.+.+|+ ++++|+|++..+..
T Consensus 78 ~D~G~Y~C~a~~~~~~~--~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~ 154 (207)
T 2vol_A 78 LNGKEFKCRVNSAAFPA--PIEKTISKTK-GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAEN 154 (207)
T ss_dssp HTTCCEEEEEECTTCSS--CEEEEECCCC-CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSC
T ss_pred CCCCEEEEEEEccCCCC--ceEEEeccCC-CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccC
Confidence 99999999999864321 1112222211 112233332 2222222369999999995444666 49999999987644
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..........++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 155 ~~~~~~~~~~~g-~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~ 198 (207)
T 2vol_A 155 YKNTQPIMDTDG-SYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN 198 (207)
T ss_dssp EEECCCEECTTS-CEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred cccCCceECCCC-CEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence 322111122333 55666789998888889999999999987644
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-16 Score=160.42 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=125.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecCC------c------------ccCCCCcceEEeecCCCce
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGP------H------------RNLSGFDRYAMIGSDEEGD 89 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~------~------------~~~~~~~r~~i~~~~~~~~ 89 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....... . ......+|+.+..+...+.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 4677899999999999999863 337999985421100 0 0011236888877666678
Q ss_pred eEEEEeecccCCCceEEEEEEeCCCC---------CcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEcc
Q psy17146 90 YSLEIYPVMLDDDARYQCQVSTGILG---------EPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~---------~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~ 158 (1011)
++|+|.+++.+|+|.|.|.+.+.... ........+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+.
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence 89999999999999999999764210 01122334567776 344455554 33444456799999999965
Q ss_pred CCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 159 NGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 159 ~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
...|.+ .+.|++++..+...... ........+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~--~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 227 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 227 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECC--CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred eEeCCCeEEEEEECCccCceEecC--ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCc
Confidence 556754 68999988654221111 112223356667889999999889 99999999987654
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-16 Score=171.98 Aligned_cols=201 Identities=12% Similarity=0.008 Sum_probs=139.4
Q ss_pred CceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccc-eeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI-KSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+..|++++|.|.+.++ |.+ .|.|++||..+.. .++.... .+. .+.|+|.++...|+|.|+|.
T Consensus 8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~-~i~W~~~g~~l~~---~~~~~~~----~~~~~~~L~i~~~~~~d~g~y~c~ 79 (313)
T 2d9q_B 8 SAPIVHLGDPITASCIIKQNCSHLDPEP-QILWRLGAELQPG---GRQQRLS----DGTQESIITLPHLNHTQAFLSCSL 79 (313)
T ss_dssp SCSEECTTCCEEEEECCCTTSCSSCSCS-CCEEESSSCBCTT---CEECCCS----SSCCCEEEEESCCCSSEEEEEEEE
T ss_pred CCcEEcCCCCEEEEEEECCCCCCCCccc-ceEEEeCCEECCc---cceEEEe----cCeEEEEEEEeccCCCccceEEee
Confidence 45668899999999999997 567 8999999998752 2222111 222 37899999999999999999
Q ss_pred EEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccccc-ccccccccc-cCCCCC
Q psy17146 710 VSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHV-TADGEKNQC-KESDNS 787 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~s~~~~W-~~~d~~ 787 (1011)
|.|..+...+.+.|.|. ..|.+|.++..... ..+++.++| ++.|++
T Consensus 80 ~~~~~~~~~~~~~l~v~--------------------------------~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~ 127 (313)
T 2d9q_B 80 NWGNSLQILDQVELRAG--------------------------------YPPAIPHNLSCLMNLTTSSLICQWEPGPETH 127 (313)
T ss_dssp ESSSSEEEEEEEEEEEC--------------------------------CCCCCCEEEEEEEETTTTEEEEEEECCSCCS
T ss_pred ecCCCceeEEEEEEccC--------------------------------CCCCCCccceeeECCCCccEEEEecCCCCCC
Confidence 97765555556666652 23337888877666 467899999 777777
Q ss_pred CCCcCcceeeecCc----------------------------ccccccccc---c---CCCCCCCccccccccccccccc
Q psy17146 788 SNISDIKLEFRTGS----------------------------SVSNVHLDY---A---GHDSETGSESVHTRIGVPLAGP 833 (1011)
Q Consensus 788 s~I~~Y~ve~~~~~----------------------------~~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P 833 (1011)
.++ .|+|+++... -.+|+.|.| | +|.+.++...+.+.+.++..+|
T Consensus 128 ~~~-~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP 206 (313)
T 2d9q_B 128 LPT-SFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPP 206 (313)
T ss_dssp SCC-EEEEEEEECCTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCC
T ss_pred Cce-eEEEEEEecCCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcC
Confidence 654 5999986532 157889999 5 6765443444667777778889
Q ss_pred ccCCccccccc---ccCcCCCCCCCCCCCCCCCccEEEEEeee-ccCCCC
Q psy17146 834 VPMDQRYHRYS---SADFADAVFPSLKPDGHNNNGFVFSDFIR-DYNQTL 879 (1011)
Q Consensus 834 ~~~~~~~~~~~---~~~~~~i~W~p~~~~~~ng~~~gY~v~~r-~~~~~~ 879 (1011)
.++.......+ +.+...|+|+||.. .++.+++|.|+|| ..+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~l~W~~p~~--~~~~~l~Y~v~y~~~~~~~~ 254 (313)
T 2d9q_B 207 MLRTMDPSPEAAPPQAGCLQLSWEPWQP--GLHINQKCELRHKPQRGEAS 254 (313)
T ss_dssp EEEECCC-------CCSCEEEEEECCGG--GTTSCEEEEEEEEESSSCCC
T ss_pred ceeEEEEecccccCCCCeEEEEECCCCC--CCceeEEEEEEEccCCCCCC
Confidence 88765541000 12233569999753 3344689999999 555444
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=164.44 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=150.8
Q ss_pred CceEEEcCCCcEEEEEEEecC-----CCCeEEEEecCCceee------cCC---CcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN-----PAPEITWIHEDSDKVV------GNS---PNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~-----p~p~v~W~k~~~~~~~------~~~---~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|.+..+..|++++|.|.+.+. |.+.+.|+++|..+.. .++ +.|+|.++..+|+|.|+|.|.+ +.+
T Consensus 7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~-~~~ 85 (313)
T 2d9q_B 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWG-NSL 85 (313)
T ss_dssp ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESS-SSE
T ss_pred CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecC-CCc
Confidence 457788999999999999997 6789999999865421 122 5699999999999999998865 555
Q ss_pred ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC------------
Q psy17146 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP------------ 684 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~------------ 684 (1011)
.....+.|.|..+|. ....|.|...+.+..+.+.|......- ....|.+....
T Consensus 86 ~~~~~~~l~v~~~P~------------~P~~l~c~~~~~~~~~~~~W~~~~~~~---~~~~Y~l~~~~~~~~~~~~~~~~ 150 (313)
T 2d9q_B 86 QILDQVELRAGYPPA------------IPHNLSCLMNLTTSSLICQWEPGPETH---LPTSFTLKSFKSRGNCQTQGDSI 150 (313)
T ss_dssp EEEEEEEEEECCCCC------------CCEEEEEEEETTTTEEEEEEECCSCCS---SCCEEEEEEEECCTTSCSCCCCE
T ss_pred eeEEEEEEccCCCCC------------CCccceeeECCCCccEEEEecCCCCCC---CceeEEEEEEecCCCcccCCccc
Confidence 566778888877664 345666766654443366775432110 01122221100
Q ss_pred -----cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE-EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeec
Q psy17146 685 -----LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV-EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRK 758 (1011)
Q Consensus 685 -----~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 758 (1011)
........+...++.....+.++|.|.|.+|.... .+.+...+ .
T Consensus 151 ~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~------------------------------~ 200 (313)
T 2d9q_B 151 LDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMD------------------------------V 200 (313)
T ss_dssp EEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGG------------------------------G
T ss_pred ccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhh------------------------------e
Confidence 00112233444457788888899999999997532 22232210 1
Q ss_pred cCCCCCCCCccccc------ccccccccc-cCCCCCCCCcCcceeee-cCcc---------------------ccccccc
Q psy17146 759 VKKPPPGNGIEHHV------TADGEKNQC-KESDNSSNISDIKLEFR-TGSS---------------------VSNVHLD 809 (1011)
Q Consensus 759 ~~~~~p~~~~~~~~------~~~s~~~~W-~~~d~~s~I~~Y~ve~~-~~~~---------------------~p~~~Y~ 809 (1011)
.++.||.++.+... ..+++.|+| ++.+++..+.+|.|+|+ .... .|+++|+
T Consensus 201 ~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~ 280 (313)
T 2d9q_B 201 VKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYT 280 (313)
T ss_dssp EECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEE
T ss_pred eccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEE
Confidence 24458888887776 467899999 55555555689999998 4322 6888999
Q ss_pred c---c---CCCCCCC----ccccccccccccc
Q psy17146 810 Y---A---GHDSETG----SESVHTRIGVPLA 831 (1011)
Q Consensus 810 f---A---~G~g~~s----s~~~~t~~~~P~~ 831 (1011)
| | .|.|..| ...++|.+++|.+
T Consensus 281 ~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~ 312 (313)
T 2d9q_B 281 LQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312 (313)
T ss_dssp EEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred EEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence 9 4 5777655 4457888888864
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-15 Score=153.22 Aligned_cols=174 Identities=19% Similarity=0.257 Sum_probs=116.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce----------------------eec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK----------------------VVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~----------------------~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|... .. ... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 4456789999999999999875 67899998631 10 000 12379999999
Q ss_pred CCCCEEEEEEEEe-cCCC----ceeeEEEEEEcC----CCeeec-CCceeeecC-CcEEEEEEEEec-CCCCeEEEEE-C
Q psy17146 600 DDLAGRYYCKASV-MGFP----EVGAEATVYLKG----RPTIIS-HRTQFGIPG-DTARVECSAFSI-PPPEKVTWSY-R 666 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n-~~~~----~~s~~~~l~V~~----~P~i~~-~~~~~v~~G-~~v~L~C~~~g~-p~p~~v~W~~-~ 666 (1011)
.+|+|.|.|.+.+ .+.+ .....+.|.|.. +|.+.. .+...+..| +.++|.|.+.|. |.|..|+|++ |
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN 166 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence 9999999999984 1211 123446788865 365552 222335578 999999999987 7766999999 9
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCC--CCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH--DHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|..+....... ..... ......+.|.|..... +|.|.|+|.|.|..|.......+.|.
T Consensus 167 g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 167 NSDISSTRGFP-SVLRG-GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp SCEECCEEECC-CEEET-TEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred CCceeeEEECC-ccccC-CcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 98875200000 00000 0011246899998887 88999999999999988877777664
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-15 Score=152.59 Aligned_cols=158 Identities=20% Similarity=0.340 Sum_probs=113.3
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-------------------------ee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-------------------------VV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-------------------------~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|.... . .. ....+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 4467799999999999999854 679999985321 0 00 112359999
Q ss_pred ecCCCCCEEEEEEEEecCC-CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCC-CCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGF-PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPP-PEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~-~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~-p~~v~W~~~g~ 668 (1011)
+++.+|+|.|.|.+.|... ......+.|.|. .+|.+. ...... ..|+.++|.|.+.+ .|. +..+.|+++|+
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~ 165 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQ 165 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCST
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCE
Confidence 9999999999999998421 233444567775 345555 222222 78999999999998 676 45899999998
Q ss_pred Eeccc--------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 669 EIGVG--------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 669 ~l~~~--------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.+... .++.|. ..+.|.|.....+|.|.|+|.|.|..|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~---------~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 166 GVTARNFPPSQDASGDLYT---------TSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp TCEEEECCCEECSSSSCEE---------EEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred ECceEEcCceeeCCCCcEE---------EEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 77421 112222 235799999999999999999999987543
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=136.25 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCcccccCCcEEEEEEeecCCC---ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPS---HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~---~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
....+..|+.++|.|.+.+..+ +..|+|+|||..+.. ....|.|..+... |+|.|+|++.+..|....+..+.|
T Consensus 10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--aT~tLti~s~t~s-dSG~YqCvVTDa~Gcs~tSs~VtV 86 (304)
T 3shs_A 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--NTATLTVADATSE-NAGSYKVTVQDTDTMTSVESEVFL 86 (304)
T ss_dssp SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--CSSEEEESSCCGG-GCEEEEEEEEETTTCCEEECCCEE
T ss_pred CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--CcceEEeeecccc-CCeEEEEEEEECCCCeeeeeeEEE
Confidence 4567899999999999887643 679999999999765 4568999999887 999999999998887655555555
Q ss_pred Eecc--eEe-eCCCceEecCCCcEEEEeec--C-CCC-----CCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEE
Q psy17146 388 TYGP--RFR-ARPYSVQVDRGAGVNLLCDV--D-GNP-----APEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P--~~~-~~p~~~~v~~G~~v~l~C~~--~-g~p-----~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
...+ .+. ..|....+..|..+.|.+.+ . |.| ..++.|+|++..+ .....|++......++|.|+|.+
T Consensus 87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~I--sgAq~lT~sS~TateaG~YtV~V 164 (304)
T 3shs_A 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--DTTQDITIQEFTADKNGVYTVKV 164 (304)
T ss_dssp ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEE--ESSSEEEECSCCGGGCEEEEEEE
T ss_pred eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEc--cCccccceeeEEecCCeEEEEEE
Confidence 5533 332 34666677788999999987 4 344 4699999998644 34456788888999999999999
Q ss_pred EEcCC-cceeeEEEEEEcCCCeeecc-CcccccCCCeEEEEe
Q psy17146 457 SVMGF-PEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496 (1011)
Q Consensus 457 ~n~~~-~~~s~~~~v~v~~~p~~~~~-~~~~~~~g~~~~l~C 496 (1011)
.|..+ ...++.+.|.+...+.-... ....+..|+.+.|..
T Consensus 165 Tn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~ 206 (304)
T 3shs_A 165 WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY 206 (304)
T ss_dssp ESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECC
T ss_pred EcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEE
Confidence 99644 56677777777544332222 222334444444443
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=132.68 Aligned_cols=95 Identities=26% Similarity=0.385 Sum_probs=82.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+.+..+.+|+.++|.|.+.|.|.| .|+|+|||+.+......++.+.. .+..++|.|.+++.+|+|.|
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y 78 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIEN----TDDLTTLIIMDVQKQDGGLY 78 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEE----CSSEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeec----ccceEEEEEcCCCccCCEEE
Confidence 367777 4567789999999999999999999 99999999999865556777665 34467999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.+|.++.++.|.|++
T Consensus 79 ~C~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 79 TLSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEEE
Confidence 999999999999999999863
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=160.74 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=116.6
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------ee-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VV-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|+.. .. .. ....+|+|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 35578899999999999999887 57999999631 10 00 1134799999
Q ss_pred cCCCCCEEEEEEEEecCCC----ceeeEEEEEEcC----------------CCeeec-CCceeeecCCcEEEEEEEEecC
Q psy17146 598 TSDDLAGRYYCKASVMGFP----EVGAEATVYLKG----------------RPTIIS-HRTQFGIPGDTARVECSAFSIP 656 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~----~~s~~~~l~V~~----------------~P~i~~-~~~~~v~~G~~v~L~C~~~g~p 656 (1011)
++.+|+|.|+|.+.|...+ .....+.|.|.. ++.+.. +....+.+|++++|.|.+.+.|
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 9999999999999984211 122345777876 344554 4567799999999999999887
Q ss_pred CC-----CeEEEEEC--CeE---ecc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 657 PP-----EKVTWSYR--GEE---IGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 657 ~p-----~~v~W~~~--g~~---l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.+ ..+.|+|+ |.. +.. ....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe----cCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 64 27999996 321 111 0134555432 2345789999999999999999999964
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=160.51 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=118.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc-------------------------eeec-----CCCcEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD-------------------------KVVG-----NSPNLT 594 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~-------------------------~~~~-----~~~~L~ 594 (1011)
+.. |..+.+.+|++++|.|.+.+. +.+.+.|+|.... .... ...+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 445 778899999999999999886 5679999985311 0000 113799
Q ss_pred EeecCCCCCEEEEEEEEec--------CCCceeeEEEEEEcC---------------CCeeecCCceeeecCCcEEEEEE
Q psy17146 595 LLMTSDDLAGRYYCKASVM--------GFPEVGAEATVYLKG---------------RPTIISHRTQFGIPGDTARVECS 651 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~--------~~~~~s~~~~l~V~~---------------~P~i~~~~~~~v~~G~~v~L~C~ 651 (1011)
|.+++.+|+|.|+|.+.|. ........+.|.|.. +|.+..++...+.+|++++|.|.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~ 162 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCT 162 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEE
Confidence 9999999999999999984 122344556777876 66676555588999999999999
Q ss_pred EEe-cCC-CCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 652 AFS-IPP-PEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 652 ~~g-~p~-p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+.+ .+. + .+.|+|. +..+.. ....++.+.. .+....|+|.+++.+|+|.|.|.|.|..+
T Consensus 163 ~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 235 (280)
T 3fku_X 163 GNSNNVGNQ-GAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR----SGNTASLTITGLQPEDEADYYCSTWDSSL 235 (280)
T ss_dssp CCCCCCCTT-CCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEEEETTT
T ss_pred ecCCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 998 443 5 8999983 322210 1134555543 23456799999999999999999999873
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=159.91 Aligned_cols=232 Identities=16% Similarity=0.081 Sum_probs=154.5
Q ss_pred cCCceEEEcCCCcEEEEEEEec-------CCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDG-------NPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g-------~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
..|++..+..|++++|.|.+.+ .|.+.|.|+|+|..+. ....+.|+|.++...| |.|+|.|.|.+
T Consensus 9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~g 87 (303)
T 1i1r_A 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTFG 87 (303)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEETT
T ss_pred EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccCC
Confidence 4577888999999999999986 4889999999985442 1223579999999885 99999998842
Q ss_pred CCc-eeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc--------
Q psy17146 615 FPE-VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL-------- 685 (1011)
Q Consensus 615 ~~~-~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~-------- 685 (1011)
... ....+.|.+..+|. ....|.|...+.... .++|......- ....|.+.....
T Consensus 88 ~~~~~~~~~~l~v~~~P~------------~P~~l~~~~~~~~~v-~l~W~~~~~~~---~~~~Y~v~~~~~~~~~~~~~ 151 (303)
T 1i1r_A 88 QLEQNVYGITIISGLPPE------------KPKNLSCIVNEGKKM-RCEWDGGRETH---LETNFTLKSEWATHKFADCK 151 (303)
T ss_dssp TEEEEEEEEEEEEECCCC------------CCEEEEEEEETTSCC-EEEEECCSCCS---SCCEEEEEEEETTEECCCEE
T ss_pred CcceEEEEEEEeccCCCC------------CCeeeEEEECCCCcE-EEEccCCCCCC---CCcCEEEEEEecCCCCccCC
Confidence 222 23445566665553 445678877665444 78887532210 112333321100
Q ss_pred -CccceeEEEEcCC-CCCCCEEEEEEEEcCCCCeEE-EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC
Q psy17146 686 -KEGIKSTLIIRES-RHDHFGVYNCSVSNPYGSDSV-EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP 762 (1011)
Q Consensus 686 -~~~~~~~L~I~~~-~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 762 (1011)
..+....+.|.++ .....+.++|.|.|..|.... .+.+.... ..++.
T Consensus 152 ~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~------------------------------~~~p~ 201 (303)
T 1i1r_A 152 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY------------------------------KVKPN 201 (303)
T ss_dssp CCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGG------------------------------GEECC
T ss_pred CcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHH------------------------------eEecC
Confidence 1122467889998 788888999999999997642 22222110 12344
Q ss_pred CCCCCccccc--ccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c--
Q psy17146 763 PPGNGIEHHV--TADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 763 ~p~~~~~~~~--~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A-- 811 (1011)
||.++.+... +.+++.|+| ++.+.+++|.+|.|+|+.... .|+++|+| |
T Consensus 202 pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n 281 (303)
T 1i1r_A 202 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 281 (303)
T ss_dssp CCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEecc
Confidence 7887777644 678999999 555666799999999986422 67889999 4
Q ss_pred -CCCCCCC--c--cccccccc
Q psy17146 812 -GHDSETG--S--ESVHTRIG 827 (1011)
Q Consensus 812 -~G~g~~s--s--~~~~t~~~ 827 (1011)
.|.|.+| | ..++|.++
T Consensus 282 ~~G~G~~S~wS~~~~~~T~e~ 302 (303)
T 1i1r_A 282 EDGKGYWSDWSEEASGITYED 302 (303)
T ss_dssp TTSCSCCCCCCCCEEEECCCC
T ss_pred CCCCCCcCCCCCccceeCCcC
Confidence 6888777 3 23556554
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=157.64 Aligned_cols=188 Identities=17% Similarity=0.280 Sum_probs=124.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC--------c-----ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP--------H-----RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~--------~-----~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.+|..+.+.+|++|+|.|.+.+. ...+.|+|....... . ..-...+|+.+..+...+.++|+|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 45778999999999999999752 347999985421100 0 0011237888877666678899999
Q ss_pred ecccCCCceEEEEEEeCCC-------------CC-----cceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGIL-------------GE-----PAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELEC 155 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~-------------~~-----~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C 155 (1011)
+++.+|+|.|.|.+.+... +. .......+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C 163 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 163 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence 9999999999999986310 00 1123344677887 444555554 33344456799999999
Q ss_pred EccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 156 ISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 156 ~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+....| ...+.|++++..+..... ......+ ..+...+.|.|.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~P~~~~v~W~~~g~~~~~~~~-~~~~~~~-g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 228 (248)
T 3u2s_H 164 LVKDYFPEPVTVSWNSGALTSGVHTF-PAVLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 228 (248)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEEC-CCEECTT-SCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTE
T ss_pred EEeeEECCCeEEEEeECCccCceeec-CceECCC-CCEEEEEEEEEChhhcCC-CeEEEEEEECCCCc
Confidence 9665577 578999998864322111 0112223 356667889999998888 99999999987755
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-15 Score=156.13 Aligned_cols=171 Identities=18% Similarity=0.316 Sum_probs=117.7
Q ss_pred cCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Ccee-----------------------e-----cCCCcEEEe
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDKV-----------------------V-----GNSPNLTLL 596 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~~-----------------------~-----~~~~~L~I~ 596 (1011)
..|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .... . ....+|+|.
T Consensus 11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 90 (261)
T 2xqy_G 11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS 90 (261)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence 346678899999999999999887 6899999874 2110 0 113479999
Q ss_pred ecCCCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
+++.+|+|.|.|.+.|.... .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|+.|.|++++.
T Consensus 91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 99999999999999983211 122345788864 46654 2333346789999999999986 7666899999988
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.+........ ... ......+.|.|.....+| |.|+|.|.|..........+
T Consensus 171 ~~~~~~~~~~--~~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~ 221 (261)
T 2xqy_G 171 SSGVHTFPAV--LQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 221 (261)
T ss_dssp CTTEEECCCE--EET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cCceEecCce--ecC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence 6532111111 111 011124789999998888 99999999987665444433
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=156.86 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=118.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--ce-----------------------ee----cCCCcEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DK-----------------------VV----GNSPNLTL 595 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~-----------------------~~----~~~~~L~I 595 (1011)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. .. ....+|+|
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 455667788999999999999999988889999998741 10 00 11247999
Q ss_pred eecCCCCCEEEEEEEEecCC-----CceeeEEEEEEcC------CCeeec--CCceeeecCCcEEEEEEEEec-CCCCeE
Q psy17146 596 LMTSDDLAGRYYCKASVMGF-----PEVGAEATVYLKG------RPTIIS--HRTQFGIPGDTARVECSAFSI-PPPEKV 661 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~-----~~~s~~~~l~V~~------~P~i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v 661 (1011)
.+++.+|+|.|+|.|.|... ......+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 184 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 184 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence 99999999999999998211 0112335677754 666652 333445679999999999997 442389
Q ss_pred EEEECCeEecccCCCC-eEEec-CCcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 662 TWSYRGEEIGVGSSDD-YSVLE-DPLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 662 ~W~~~g~~l~~~~~~~-~~~~~-~~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
+|++||+++....... ..... ....++ ..+.|.|......| .|.|+|.|.|......
T Consensus 185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 9999999886321000 00000 000111 24578998887764 6789999999887654
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-16 Score=185.95 Aligned_cols=443 Identities=12% Similarity=0.044 Sum_probs=229.6
Q ss_pred CCcccccCCcEEEEEEee-------cCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCC-
Q psy17146 311 GSNRLVEGTDVRLYCKAE-------ANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDV- 376 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~-------~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~- 376 (1011)
.+..+..|+.++|.|.+. +.+.+ .|.|++||+.+... .....|.|.++... |+ .|.|.+....
T Consensus 11 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~-~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~-~~-~y~C~~~~~~~ 87 (589)
T 3l5h_A 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPKEQYTIINRTASSVTFTDIASL-NI-QLTCNILTFGQ 87 (589)
T ss_dssp SCCCCCSSSCCCCCC-CCTTTTTTTTCCTT-TCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSS-CC-CCCCC-CCTTC
T ss_pred CCCEEeCCCCEEEEEEEeCccCcccccccc-ceEEEeCCEECChHHccccCCcEeEEEEecCCCc-ce-eeEEecccCCC
Confidence 456788999999999998 44444 89999999877542 23567889998875 64 5789886421
Q ss_pred -ccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCc----------------e--ee---c
Q psy17146 377 -GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------------K--VV---G 434 (1011)
Q Consensus 377 -g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~----------------~--~~---~ 434 (1011)
+.....+.|.|..+| +....|.|...+.....+.|...... . .. .
T Consensus 88 ~~~~~~~~~l~v~~pP-------------~~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~~~~~ 154 (589)
T 3l5h_A 88 LEQNVYGITIISGLPP-------------EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRD 154 (589)
T ss_dssp C-CCCCCCCCCC-CCC-------------CCCEEEEEEEETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCCCEECBTT
T ss_pred cccEEEeEEEeccCCC-------------CCCEeeEEEECCCceEEEEECCCCcCCcCceEEEEEEEcCCCcccCCCCCC
Confidence 112344455555544 23344555554444455555543210 0 00 0
Q ss_pred cCCcEEEE-eeccCCCeEEEEEEEEcCCcceeeEEEEEEcC--CCeeeccCcc--cccCCCeEEEEeEeeeCCCCCeeEE
Q psy17146 435 NSPNLTLL-MTSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RPTIISHRTQ--FGIPGDTARVECSAFSIPPPEKVTW 509 (1011)
Q Consensus 435 ~~~~L~I~-~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~--~p~~~~~~~~--~~~~g~~~~l~C~~~~~~~~~~v~W 509 (1011)
......|. ++.......|+|.|.|..+...+..+.+.... +|........ .......+ .++|
T Consensus 155 ~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v-------------~l~W 221 (589)
T 3l5h_A 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSIL-------------KLTW 221 (589)
T ss_dssp BSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCE-------------EEEC
T ss_pred CcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeE-------------EEEe
Confidence 11223333 34555667788999996555444434332211 1110000000 00112223 3344
Q ss_pred eeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC
Q psy17146 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN 589 (1011)
Q Consensus 510 ~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~ 589 (1011)
...... .| ..+.+.+.-.+...-.|..-........
T Consensus 222 ~~p~~~------------------------------------------~~--~~~~Y~v~~~~~~~~~w~~~~~~~~~~~ 257 (589)
T 3l5h_A 222 TNPSIK------------------------------------------SV--IILKYNIQYRTKDASTWSQIPPEDTAST 257 (589)
T ss_dssp CCCGGG------------------------------------------GT--SCEEEEEEEEETTCSCCBCCCTTSSCSC
T ss_pred CCCCCC------------------------------------------Ce--eeEEEEEEECCCCCCCcEEEccccCcCc
Confidence 321100 00 0011111000000001221110111223
Q ss_pred CCcEEEeecCCCCCEEEEEEEEec-CCCce---eeEEEEEE-cCCCeeecCCce-ee-----ecCCcEEEEEEEEe--cC
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVM-GFPEV---GAEATVYL-KGRPTIISHRTQ-FG-----IPGDTARVECSAFS--IP 656 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~---s~~~~l~V-~~~P~i~~~~~~-~v-----~~G~~v~L~C~~~g--~p 656 (1011)
...+.|.++.......|+.+|.|. +.+.. +..+.+.- ...|.. .+... .+ .....+.|.+.... .+
T Consensus 258 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~-~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~ 336 (589)
T 3l5h_A 258 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK-APSFWYKIDPSHTQGYRTVQLVWKTLPPFEA 336 (589)
T ss_dssp CSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCS-CCCEEEECCSCSSTTSCCEEEEECCCCTTTS
T ss_pred eeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCC-CCcEEEEeecCcCCCcceEEEEEeeCCchhc
Confidence 467889999999999999999983 22322 22221111 111210 11100 01 12345666654210 00
Q ss_pred C-C---CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeE
Q psy17146 657 P-P---EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLL 732 (1011)
Q Consensus 657 ~-p---~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 732 (1011)
. + ..|.|...+.... .. ......+.+ +.....+.+++.|.|..|....+. +.+..
T Consensus 337 ~g~i~~Y~v~~~~~~~~~~-------~~------~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~-~~~~~----- 395 (589)
T 3l5h_A 337 NGKILDYEVTLTRWKSHLQ-------NY------TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAV-LTIPA----- 395 (589)
T ss_dssp SSCCCEEEEEECCTTSCCC-------BC------CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCC-CCCCC-----
T ss_pred cCceeeEEEEEecCCCCce-------ee------ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeE-EEeec-----
Confidence 0 0 1233322221110 00 011123333 446677889999999999664332 11110
Q ss_pred EEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc---------
Q psy17146 733 LILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS--------- 802 (1011)
Q Consensus 733 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~--------- 802 (1011)
....++ |+.++.+... .+++.++|..... ++.+|+|+++....
T Consensus 396 ------------------------~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~--~i~~Y~v~~~~~~~~~~~~~~~~ 448 (589)
T 3l5h_A 396 ------------------------CDFQATHPVMDLKAFPK-DNMLWVEWTTPRE--SVKKYILEWCVLSDKAPCITDWQ 448 (589)
T ss_dssp ------------------------TTCCCCSCCCSCEEEEC-SSSEEEECCCCSS--CCSCBCCEEEEECSSSCCCEEEC
T ss_pred ------------------------ccccCCCCcceEEEEEC-CCeEEEEEECCCC--CccEEEEEEEECCCCCCCccCcE
Confidence 011223 5556666655 5789999933332 89999999876321
Q ss_pred ---------------cccccccc---c---CCCCCCCcccccccccccccccccCCcccccccccCcCCCCCCCCCCCCC
Q psy17146 803 ---------------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGH 861 (1011)
Q Consensus 803 ---------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ 861 (1011)
.|++.|.| | .|.|.++.....|.+++|..+|. +.... ...+...|+|+|++++..
T Consensus 449 ~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~~~~t~~~~P~~pp~-l~~~~---~~~~sv~l~W~~~~~~~~ 524 (589)
T 3l5h_A 449 QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT-VRTKK---VGKNEAVLEWDQLPVDVQ 524 (589)
T ss_dssp CBCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEEEEESSCCCCSSCCC-CCEEC---CCSSCBEEBCCCCCHHHH
T ss_pred EeeCCcceEEehhccccCcEEEEEEEEEeCCcccCCEEEEEEeccCCCCCCCe-EEEee---cccceEEEEecCCCHHHc
Confidence 78889999 5 77888877777899999988774 54433 123344669999888899
Q ss_pred CCccEEEEEeeeccCCCC
Q psy17146 862 NNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 862 ng~~~gY~v~~r~~~~~~ 879 (1011)
||.+.||.|+|++.+...
T Consensus 525 ~g~i~~Y~v~~~~~~~~~ 542 (589)
T 3l5h_A 525 NGFIRNYTIFYRTIIGNE 542 (589)
T ss_dssp CSCEEEEEECCBCSSCCC
T ss_pred CccceeEEEEEEeCCCCe
Confidence 999999999999876544
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=159.00 Aligned_cols=165 Identities=13% Similarity=0.201 Sum_probs=112.4
Q ss_pred ecCCceEE-EcCCCcEEEEEEEecC---CCC-eEEEEecCCceee--------cC------CCcEEEeecCCCCCEEEEE
Q psy17146 548 RARPYSVQ-VDRGAGVNLLCDVDGN---PAP-EITWIHEDSDKVV--------GN------SPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 548 ~~~p~~~~-v~~G~~~~l~C~~~g~---p~p-~v~W~k~~~~~~~--------~~------~~~L~I~~v~~~d~G~Y~C 608 (1011)
...|.... +.+|++++|.|.+.+. |.+ .|+|+|++..+.. .. ...|+|.++..+|+|.|+|
T Consensus 20 ~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C 99 (239)
T 1i1c_A 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKC 99 (239)
T ss_dssp EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEE
T ss_pred EECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEE
Confidence 34444444 7899999999999987 776 8999999854321 11 1379999999999999999
Q ss_pred EEEecCCCc--eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 609 KASVMGFPE--VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
.|.|. .+. ....+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||+.+......++....
T Consensus 100 ~~~~~-~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~ 178 (239)
T 1i1c_A 100 KVNSG-AFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDT 178 (239)
T ss_dssp EEECS-SSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred EEecc-cCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECC
Confidence 99993 332 2333333 4567787652 222223458899999999995 554589999999988532111111111
Q ss_pred CCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 683 DPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 683 ~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++ ..+.|.|......|.|.|+|.|.|.....
T Consensus 179 ----dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 179 ----DGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp ----TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred ----CCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence 22 23456666666667999999999987653
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-15 Score=131.43 Aligned_cols=93 Identities=23% Similarity=0.464 Sum_probs=80.5
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+.+..+.+|++++|.|.+.|.|.| .|+|+|||+.|. .+.++.+.. ++....|.|.++..+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLA--ASERLSFPA----DGAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CCSSEECCE----ETTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECccccc--ceeeEEEee----cCceEEEEEecCChhhCEEE
Confidence 367776 4567889999999999999999999 999999999997 456676654 34467899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.+|..+.++.|.|.+
T Consensus 85 ~C~a~N~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 85 VCRARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEEc
Confidence 999999999999999998854
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=154.22 Aligned_cols=171 Identities=20% Similarity=0.334 Sum_probs=116.9
Q ss_pred CceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--e-ee---------------------------cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--K-VV---------------------------GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~-~~---------------------------~~~~~L~I~~v 598 (1011)
+..+.+.+|++++|.|.+.+. +...+.|+|.... . .. ....+|+|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 456788999999999999874 3568999985311 0 00 11234999999
Q ss_pred CCCCCEEEEEEEEecC---CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeE
Q psy17146 599 SDDLAGRYYCKASVMG---FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEE 669 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~ 669 (1011)
+.+|+|.|.|.+.|.. .......+.|.|. .+|.+. ......+..|+.++|.|.+.| .|.++.++|+++|..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~ 166 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 166 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence 9999999999999832 2233445677775 567666 334445668999999999998 676668999999874
Q ss_pred ecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 670 IGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 670 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+........ ... ......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 167 ~~~~~~~~~--~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~ 218 (253)
T 3liz_H 167 SGVHTFPAV--LQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP 218 (253)
T ss_dssp TTEEECCCE--EET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred cceEeCCcc--ccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence 321110000 000 001123689999999999 9999999999998887777765
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=150.74 Aligned_cols=187 Identities=15% Similarity=0.234 Sum_probs=123.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....-.. .......+|+.+..+...+.++|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (226)
T 3mlr_H 6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT 85 (226)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence 3557899999999999999752 347999985421100 001122368888876666788999999
Q ss_pred cccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITW 168 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W 168 (1011)
++.+|+|.|.|.+.+...+ ........+.|+|... ..+|.+. ..+...+.+|+.+.|.|.+....| .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W 165 (226)
T 3mlr_H 86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 165 (226)
T ss_dssp CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence 9999999999999764200 0011223356777543 3345554 233444568999999999666667 578999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 216 (226)
T 3mlr_H 166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 216 (226)
T ss_dssp --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCc
Confidence 4443332222111112223456667899999999999 99999999987754
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=155.26 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=115.2
Q ss_pred ccee-ecCCceEEEcCCCcEEEEEEEecC-CC-C-eEEEEecCCce-ee-------cCC------CcEEEeecCCCCCEE
Q psy17146 544 GPRF-RARPYSVQVDRGAGVNLLCDVDGN-PA-P-EITWIHEDSDK-VV-------GNS------PNLTLLMTSDDLAGR 605 (1011)
Q Consensus 544 ~P~~-~~~p~~~~v~~G~~~~l~C~~~g~-p~-p-~v~W~k~~~~~-~~-------~~~------~~L~I~~v~~~d~G~ 605 (1011)
+|.+ ...|....+.+|+.++|.|.+.|. |. | .+.|+++|..+ .. ..+ ..|+|.++..+|+|.
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~ 91 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER 91 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence 4544 355666778899999999999985 64 5 99999998765 11 122 259999999999999
Q ss_pred EEEEEEecCCCceeeEEEEEE----cCCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCe
Q psy17146 606 YYCKASVMGFPEVGAEATVYL----KGRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 606 Y~C~a~n~~~~~~s~~~~l~V----~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|+|.|.|. .+.......+.+ ..+|.+. .+.... ..|..++|.|.+.|. |....|+|+|||+.+........
T Consensus 92 Y~C~~~~~-~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~ 169 (231)
T 2w59_A 92 FTCTVQHE-ELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTT 169 (231)
T ss_dssp EEEEEECT-TCSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEEC
T ss_pred EEEEEEcC-CCCCceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccC
Confidence 99999994 333333333332 2467654 222222 235679999999996 43248999999999864320000
Q ss_pred EEecCC--c----Cc-c---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 679 SVLEDP--L----KE-G---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 679 ~~~~~~--~----~~-~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
....+. . .+ + ..+.|.|.....+|.|.|+|.|.|.....
T Consensus 170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 001100 0 11 2 24678899888889999999999998754
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=174.23 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=128.3
Q ss_pred CCceeEEecCcEEEEEEE-cC-CCCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 34 PQDQTAVVGSRVTLPCRV-ID-KTGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v-~~-~~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+++.+.+|++|+|.|.+ .+ +.+.+.|+|++..+...... ....|..+..+ .+|.|.+++.+|+|.|
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~i~~v~~~D~G~Y 447 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-----GSLFLPAVGIQDEGIF 447 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-----SCEEESSCCGGGCEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-----ceEEEeccccccCeEE
Confidence 456889999999999999 33 56699999997633221111 11245555432 2799999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCc-EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE-IELECISANGKPPAEITWIDGTGTVMSN-VRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~-v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~ 183 (1011)
+|++.+.... ..+..+.|+|..+|..|.+...... +.+|+. +.|.|.+..++|.++++|+|++..+... ..+..
T Consensus 448 ~C~~~n~~~~---~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~ 523 (581)
T 3o3u_N 448 RCQAMNRNGK---ETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSV 523 (581)
T ss_dssp EEEEECTTSC---EEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEE
T ss_pred EEEEEcCCCc---eeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEE
Confidence 9999985432 2356789999998888888766554 344544 4679995555799999999999887542 11111
Q ss_pred --ee--ecCCceEEEEEEEEEeecc-CcCCcEEEEEEEeCCCCc
Q psy17146 184 --EA--SVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 184 --~~--~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~n~~g~~ 222 (1011)
.. ..+...+...++|.|.+++ .++.|.|+|.|.|.....
T Consensus 524 ~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 524 KEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred EeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 11 1144567778899999998 566899999999986543
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=155.82 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=102.1
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--ee-----------------------e-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--KV-----------------------V-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~~-----------------------~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|.... .. . ....+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4456799999999999999876 678999986421 10 0 11247999999
Q ss_pred CCCCCEEEEEEEEecCCC-------------ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCC
Q psy17146 599 SDDLAGRYYCKASVMGFP-------------EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPE 659 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~-------------~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~ 659 (1011)
+.+|+|.|.|.+.|. .+ .....+.|.|.. +|.+.. .+...+..|+.++|.|.+.|. |.|+
T Consensus 87 ~~~DsG~Y~C~~~~~-~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 87 RAEDTAVYYCARPYL-TYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CGGGCEEEEEEEECC-SSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred ChhhCEEEEEEEecC-CCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence 999999999999983 22 122345788864 566653 233346789999999999987 7776
Q ss_pred eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 660 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.|+|+++|..+....... ....+ ......+.|.|.+...+| |.|+|.|.|..+.......+
T Consensus 166 ~v~W~k~g~~~~~~~~~~-~~~~~-g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 166 TVSWNSGALTSGVHTFPA-VLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp EEEETTTTCCSSCEECCC-EECTT-SCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred EEEEeeCCCcCCcEecCC-eEcCC-CCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 899999998643211110 11110 001124678999888878 99999999977655544444
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=153.68 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=112.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e---------------------ee----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K---------------------VV----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~---------------------~~----~~~~~L~I~~v~ 599 (1011)
+...|..+.+.+|++++|.|.+. .+.+.+.|+|++.. . .. ....+|+|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34567788999999999999995 46789999987421 1 00 122479999999
Q ss_pred CCCCEEEEEEEEecC----CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 600 DDLAGRYYCKASVMG----FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~----~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.+|+|.|.|.+.|.. .........|.|.. +|.+. .+....+..|+.++|.|.+.|. |.+..|.|++|
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 999999999999832 11122334677754 66665 2334456689999999999997 65558999999
Q ss_pred CeEecccCCC--CeEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCCe
Q psy17146 667 GEEIGVGSSD--DYSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGSD 717 (1011)
Q Consensus 667 g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~ 717 (1011)
|..+..+... ......+ ......+.|.|......| .|.|+|.|.|.....
T Consensus 161 g~~~~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKESN-YSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp TEEECTTEEECSSCEEEET-TEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred CEECCCceecccceEeCCC-CCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 9998642110 1110110 000123456666555544 678999999985443
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=152.35 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=101.8
Q ss_pred cCCCcEEEEEEEecCCC----CeEEEEecCCcee--------ecCCCcEEEee---cCCC---CCEEEEEEEEecCCCce
Q psy17146 557 DRGAGVNLLCDVDGNPA----PEITWIHEDSDKV--------VGNSPNLTLLM---TSDD---LAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 557 ~~G~~~~l~C~~~g~p~----p~v~W~k~~~~~~--------~~~~~~L~I~~---v~~~---d~G~Y~C~a~n~~~~~~ 618 (1011)
.+|++++|.|.+.|.++ +.|.|+|++..+. ...++.|.+.. +... |+|.|+|.|.|. .+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~-~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK-ALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT-TSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcC-cCCc
Confidence 78999999999998763 4999999985432 12345666543 2344 499999999994 3333
Q ss_pred --eeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 619 --GAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 619 --s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
+..+.+ .+..+|.+.. +.......|..++|.|.+.|. |.+..|+|+|||..+......++....+ ......+.
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~-gt~~~~s~ 173 (207)
T 1l6x_A 95 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSK 173 (207)
T ss_dssp CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTT-SCEEEEEE
T ss_pred ceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCC-CCEEEEEE
Confidence 333322 4566787652 222222356679999999996 5444899999999886311111111111 00012345
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|.|......|.|.|+|.|.|....
T Consensus 174 l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 174 LTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEECHHHcCCCCEEEEEEEcCCcC
Confidence 677776667899999999998764
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=149.93 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=111.7
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce----------------------eec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------VVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ... ... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5567899999999999999875 5789999863 111 000 12389999999
Q ss_pred CCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 600 DDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
.+|+|.|.|.+.|.... .....+.|.|.. +|.|. .++...+..|+.++|.|.+.|. |.|+.|+|+++|..+.
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 166 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD 166 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence 99999999999984211 223446777763 46555 2333346789999999999997 7776899999987643
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.... .. .... ......+.|. ....+| |.|+|.|.|..|.......+
T Consensus 167 ~~~~-~~-~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~~ 212 (215)
T 1c5d_H 167 VHTF-PA-VLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKKL 212 (215)
T ss_dssp CCBC-CC-EEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eEec-Cc-ccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEec
Confidence 2111 11 1110 0000123344 444456 99999999999987655443
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=157.10 Aligned_cols=232 Identities=15% Similarity=0.096 Sum_probs=143.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
+.+..++..+.+..|++++|.|.+.+.+ .+.|.|++++..+ ....++.|.|.++..+|+|.|+|.+ .|.
T Consensus 7 ~~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~----~g~ 82 (325)
T 1n26_A 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGR 82 (325)
T ss_dssp CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES----SSS
T ss_pred CccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe----CCE
Confidence 3445556666678999999999998765 7899999987542 2234588999999999999999993 456
Q ss_pred eeeEEEEEEcCCCeeecCCceeee-cCCcEEEEEEEEecC---CCCe--EEEEEC-CeEecccCCCCeEEecCCcCccce
Q psy17146 618 VGAEATVYLKGRPTIISHRTQFGI-PGDTARVECSAFSIP---PPEK--VTWSYR-GEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 618 ~s~~~~l~V~~~P~i~~~~~~~v~-~G~~v~L~C~~~g~p---~p~~--v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
....+.|.|..+|.-. . .... .+....+.|.-.... .+.. +.|.+. +.. ...+...-........
T Consensus 83 ~~~~~~L~V~~pP~~P--~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~-----~~~~~~~c~~~~~~~~ 154 (325)
T 1n26_A 83 PAGTVHLLVDVPPEEP--Q-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSP-----AEDFQEPCQYSQESQK 154 (325)
T ss_dssp CSCEEEEEECCCCCCC--C-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSS-----CEEEEEEEEEETTTTE
T ss_pred EeeeEEEEeccCCCCC--c-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCC-----CCcccccCCCCCCCCC
Confidence 7788999999887521 1 1111 222223444332110 0111 111111 100 0000000000001223
Q ss_pred eEEEEcCCC-CCCCEEEEEEEEcCCCCeE-EEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCc
Q psy17146 691 STLIIRESR-HDHFGVYNCSVSNPYGSDS-VEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGI 768 (1011)
Q Consensus 691 ~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~ 768 (1011)
.++.|..+. ....+.|+|.|.|.+|... ....+.+.. ..++.||.++.
T Consensus 155 ~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~------------------------------~v~P~pP~~l~ 204 (325)
T 1n26_A 155 FSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCG------------------------------ILQPDPPANIT 204 (325)
T ss_dssp EEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTT------------------------------CBCCCCCEEEE
T ss_pred EEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeecc------------------------------ccCCCCCcceE
Confidence 466777664 4567788999999999753 233333211 12344888888
Q ss_pred cccccc--ccccccc-cCCC--CCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCCC
Q psy17146 769 EHHVTA--DGEKNQC-KESD--NSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 769 ~~~~~~--~s~~~~W-~~~d--~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~~ 817 (1011)
+..+.. .++.|+| ++.+ .+.++.+|.|+||.... .|+++|+| | .|.|.+
T Consensus 205 v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~ 284 (325)
T 1n26_A 205 VTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEW 284 (325)
T ss_dssp EEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCC
T ss_pred EEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCC
Confidence 887653 5899999 4444 46689999999987532 78889999 5 688888
Q ss_pred C
Q psy17146 818 G 818 (1011)
Q Consensus 818 s 818 (1011)
|
T Consensus 285 S 285 (325)
T 1n26_A 285 S 285 (325)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=171.81 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=121.2
Q ss_pred ceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCc------------------eeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSD------------------KVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~------------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
....+.+|++++|.|.+ .+.|.+.++|+|++.. .....+++|.|.+++.+|+|.|+|.|.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 45778999999999999 8899999999998752 2233457899999999999999999999
Q ss_pred cCCCce-eeEEEEEEcCC---CeeecCCceeeecCCc-EEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCc-
Q psy17146 613 MGFPEV-GAEATVYLKGR---PTIISHRTQFGIPGDT-ARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL- 685 (1011)
Q Consensus 613 ~~~~~~-s~~~~l~V~~~---P~i~~~~~~~v~~G~~-v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~- 685 (1011)
. .+.. ...+.|.|..+ |.|...... +..|+. +.|.|.+.+ .|.| .|+|++||+++.. ...++.+.....
T Consensus 454 ~-~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~-~i~W~~~g~~l~~-~~~~~~~~~~~~~ 529 (581)
T 3o3u_N 454 R-NGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAG-TLSWHLDGKPLVP-NEKGVSVKEQTRR 529 (581)
T ss_dssp T-TSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCC-EEEEEETTEECCT-TSTTEEEEEEEEE
T ss_pred C-CCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCC-eEEEEECCEECCC-CCCeEEEEeeeEE
Confidence 4 4444 77888988764 455544443 445544 567999998 5888 9999999999975 233333321111
Q ss_pred -----CccceeEEEEcCCC-CCCCEEEEEEEEcCCCCeE
Q psy17146 686 -----KEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 -----~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.....++|.|..+. .++.|.|+|.|+|.++...
T Consensus 530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~~ 568 (581)
T 3o3u_N 530 HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHR 568 (581)
T ss_dssp CTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred cCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCCC
Confidence 11235789999998 4447899999999986543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=150.76 Aligned_cols=169 Identities=21% Similarity=0.320 Sum_probs=112.6
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC------------------------ceeecCCCc--EEEeecCCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------------------DKVVGNSPN--LTLLMTSDD 601 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~------------------------~~~~~~~~~--L~I~~v~~~ 601 (1011)
...|..+.+.+|++++|.|.+.+.+.+.+.|+|... +........ |+|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 345678889999999999999999999999998421 111111111 999999999
Q ss_pred CCEEEEEEEEecCCC-----ceeeEEEEEEc------CCCeeec--CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECC
Q psy17146 602 LAGRYYCKASVMGFP-----EVGAEATVYLK------GRPTIIS--HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRG 667 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~-----~~s~~~~l~V~------~~P~i~~--~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g 667 (1011)
|+|.|.|.+.+...+ .......|.|. .+|.+.. +....+..|+.++|.|.+.| .|.++.++|++||
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 164 (253)
T 3to4_D 85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (253)
T ss_dssp SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence 999999999973221 22233466664 4565542 23333446789999999999 4656589999999
Q ss_pred eEecccCCCC-eEEecC-CcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCC
Q psy17146 668 EEIGVGSSDD-YSVLED-PLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGS 716 (1011)
Q Consensus 668 ~~l~~~~~~~-~~~~~~-~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~ 716 (1011)
..+....... ...... ...++ ..+.|.|.....+| .|.|+|.|.|..-.
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence 9986421000 000000 00112 23678888888777 77999999998543
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-15 Score=152.72 Aligned_cols=183 Identities=19% Similarity=0.258 Sum_probs=119.1
Q ss_pred ccce-eecCCceeEEecCcEEEEEEEcC--C-CC-eeEEeeCCeec-CCcccCCCCcceEEeecCC--CceeEEEEeecc
Q psy17146 27 EQKF-AMEPQDQTAVVGSRVTLPCRVID--K-TG-VLQWTKDDFAL-GPHRNLSGFDRYAMIGSDE--EGDYSLEIYPVM 98 (1011)
Q Consensus 27 ~p~~-~~~p~~~~v~~G~~v~L~C~v~~--~-~~-~v~W~k~~~~l-~~~~~~~~~~r~~i~~~~~--~~~~~L~I~~v~ 98 (1011)
+|.+ ...|..+.+.+|++++|.|.+.+ + .+ .+.|+++|..+ .... .......+. ....+|+|.+++
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~------~~~~~~~~g~~~~~s~L~I~~~~ 85 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDP------MVLQEHFNGTYSASSAVPVSTQD 85 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCC------CEEEECTTSCEEEEEEEECCHHH
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccc------ccceECCCCcEEEEEEEEecchh
Confidence 3444 46788888899999999999987 4 34 99999998766 2111 111010100 023479999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKP-PAEITWIDGT 172 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~ 172 (1011)
.+|+|.|+|.+.+.... ..+.+.|... ..+|.+. .+....+ .++.+.|.|.+.+..| .++|+|+||+
T Consensus 86 ~~D~g~Y~C~~~~~~~~------~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 158 (231)
T 2w59_A 86 WLSGERFTCTVQHEELP------LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDH 158 (231)
T ss_dssp HHTTCCEEEEEECTTCS------SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred ccCCCEEEEEEEcCCCC------CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECC
Confidence 99999999999985421 2244555432 1233332 2222222 3557999999554456 4799999999
Q ss_pred ceeeeceeEEE--eee--------cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTE--EAS--------VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~--~~~--------~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+..+..... ... .++..+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 159 RAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp EECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred EECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 88765431111 111 231355666889999999999999999999987654
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=148.83 Aligned_cols=173 Identities=19% Similarity=0.264 Sum_probs=116.3
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc-----------------------eee----cCCCcEEEee
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------------------KVV----GNSPNLTLLM 597 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~-----------------------~~~----~~~~~L~I~~ 597 (1011)
+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|+... ... ....+|+|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence 3456678889999999999999995 45789999986411 111 1235899999
Q ss_pred cCCCCCEEEEEEEEecC--CCceeeEEEEEEc------CCCeeec--CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 598 TSDDLAGRYYCKASVMG--FPEVGAEATVYLK------GRPTIIS--HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~--~~~~s~~~~l~V~------~~P~i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
++.+|+|.|.|.+.|.. .........|.|. .+|.+.. +....+..|+.++|.|.+.|. |.+..|+|+||
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 162 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 162 (252)
T ss_dssp CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence 99999999999999831 1112233456664 3676652 333345679999999999986 65458999999
Q ss_pred CeEecccCCCC-eEEec-CCcCcc---ceeEEEEcCCCCC-CCEEEEEEEEcCCCCeE
Q psy17146 667 GEEIGVGSSDD-YSVLE-DPLKEG---IKSTLIIRESRHD-HFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 667 g~~l~~~~~~~-~~~~~-~~~~~~---~~~~L~I~~~~~~-d~G~Y~C~a~N~~G~~~ 718 (1011)
|+.+..+.... ..... ....++ ..+.|.|...... |.|.|+|.|.|..+...
T Consensus 163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 99886421100 00000 000122 2456888877654 57899999999987554
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=144.40 Aligned_cols=180 Identities=14% Similarity=0.214 Sum_probs=115.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcc------cCCCCcceEEeec-CCCceeEEEEeecccCC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHR------NLSGFDRYAMIGS-DEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~------~~~~~~r~~i~~~-~~~~~~~L~I~~v~~~D 101 (1011)
.+...|..+.+.+|++|+|.|.+....+.+.|+|......... .....+|+.+..+ ...+.++|+|.+++.+|
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred ccEECCCeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 3566788999999999999999987656899998642110000 0012468888765 44677899999999999
Q ss_pred CceEEEEEEeCCCC-------CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCc
Q psy17146 102 DARYQCQVSTGILG-------EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTG 173 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~-------~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~ 173 (1011)
+|.|.|.+.+.... ........+.|+|...... ...+.+.+..+ .+.|.|.+.+..|. +.++|+++ .
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~---~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~ 157 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP---PAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K 157 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC---CCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC---CCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence 99999999875310 0112233468888753211 11122222222 37999996556676 79999999 7
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEE-eeccCcCCcEEEEEEEeCCCC
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVL-TPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I-~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+...... .....++. +.+ .....+|.|.|+|.|.|..+.
T Consensus 158 ~l~~~~~~-~~~~~~g~-------y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 158 KIVEFDPA-IVISPSGK-------YSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp EEEECCCE-EEECTTSS-------EEEEECEEESSTTTCEEEEEETTEE
T ss_pred cccCCccc-eEEcCCCc-------EEEEEeecccCCCcEEEEEEECCcc
Confidence 66543221 11233332 222 223347889999999998653
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=147.53 Aligned_cols=182 Identities=15% Similarity=0.245 Sum_probs=107.2
Q ss_pred cceeecCCceeE--EecCcEEEEEEEcCC-----CCeeEEeeCCeecCCcccCCCCcceEEeecCCCcee----EEEEee
Q psy17146 28 QKFAMEPQDQTA--VVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY----SLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v--~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~----~L~I~~ 96 (1011)
|.+.+.|....+ .+|++++|.|.+.+. ...|.|+|++..+..... .+.... ..+.+ .|.|..
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~----~~~~~~---~~g~~~~~~~l~i~~ 74 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----KPREEQ---YNSTYRVVSVLTVLH 74 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE----CCCEEC---TTSCEEEEEEEECCH
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc----CCceec---cCCcEEEEEEEEEEH
Confidence 344444444434 799999999999873 238999999977642210 011111 11221 244444
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEE-EcCCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTV-LVPPDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWIDGT 172 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V-~~~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~ 172 (1011)
...+|+|.|+|.+.+..... .....+.+ .....+|.+. ......+ +|+.+.|.|.+.+.+|+ ++++|+|++
T Consensus 75 ~d~~d~g~Y~C~a~n~~~~~----~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 75 QDWLNGKEYKCKVSNKALPA----PIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp HHHHTTCCEEEEEECTTSSS----CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred HHccCCceEEEEEEcCcCCc----ceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 55556999999999864321 11122211 0122334332 2222223 45669999995444665 499999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+............++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 150 ~~~~~~~~~~~~~~~~g-t~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~ 198 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDG-SFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 198 (207)
T ss_dssp EEECCEEECCCEECTTS-CEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred eeccCccccCceECCCC-CEEEEEEEEECHHHcCCCCEEEEEEEcCCcCC
Confidence 87753222111122333 45566788888888889999999999986644
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-13 Score=131.69 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=116.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.|++..|.+|++++|+|++..+.+. +.|... +. +.. ..+...+...|.|.+|+. | |.|.|.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~---------~~~-~~~~~~~~~~l~l~~vs~-~-g~y~C~ 66 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LP---------KKE-LLLPGNNRKVYELSNVQE-D-SQPMCY 66 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECS---SC---------EEE-ECSSSSSEEEEEEEEECS-C-BCCEEE
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEee---CC---------Ccc-EeccCCceeEEEEEecCc-C-CEEEEE
Confidence 5678899999999999999999877665 777632 10 000 101112334689999983 4 999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.... ...+..+.|+|+.+|..+.|...+ ..+.+|+.++|+|.+.++.|.. .|+|||++.++.... ..
T Consensus 67 ~~c~~----~~~~~~~~l~V~~~P~~v~i~~~~-~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-----~~ 136 (185)
T 1iam_A 67 SNCPD----GQSTAKTFLTVYWTPERVELAPLP-SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-----AV 136 (185)
T ss_dssp EECSS----CEEEEECEEEEEBCCSEEEECCCC-SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-----CC
T ss_pred EECCC----CceEEEEEEEEeCCCCCCEEccCC-ccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-----CC
Confidence 86542 246788999999998887776553 3477899999999988888875 589999998885532 11
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
... ...+|++.....+|...|+|+|.|..+
T Consensus 137 ~~~----~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 137 GEP----AEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TTT----EEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred Ccc----ccEEEEEeceeccCCCeEEEEEEecCc
Confidence 111 123688777777777799999999876
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=150.25 Aligned_cols=123 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred cEEEeecCCCCCEEEEEEEEecCC-CceeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.|.|.....+|.|.|+|+|.|... ......+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.++.++|+||
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~ 169 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN 169 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEEC
Confidence 466666677889999999998432 223344432 2456777763 222223358999999999995 55568999999
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.+............+ ......+.|.|......|.|.|+|.|.|..-
T Consensus 170 g~~~~~~~~~~~~~~~d-gt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 170 GQPENNYKATPPVLDSD-GSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp TEECSSEEECCCEECTT-SCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CEECCCcCccCceECCC-CCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 99875211111111110 0011245777777666788999999999864
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=146.40 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=115.5
Q ss_pred CceEEEcCCCcEEEEEEEecCCC----CeEEEEecCCc---e----ee----------------------------cCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPA----PEITWIHEDSD---K----VV----------------------------GNSP 591 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~----p~v~W~k~~~~---~----~~----------------------------~~~~ 591 (1011)
|..+.+.+|++++|.|.+.+.+. ..+.|+|.... . .. ....
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 44677899999999999998764 48999985311 0 00 1123
Q ss_pred cEEEeecCCCCCEEEEEEEEecCC------------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGF------------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~------------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
+|+|.+++.+|+|.|.|.+.+... ........|.|. .+|.+. ......+..|+.++|.|.+.+
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~ 166 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 166 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEee
Confidence 599999999999999999987311 112233456664 356665 344445667999999999998
Q ss_pred c-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 655 I-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 655 ~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
. |.++.+.|+++|..+........ ..........+.|.|......| |.|+|.|.|..+.......|.+
T Consensus 167 ~~p~~~~v~W~~~g~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 167 YFPEPVTVSWNSGALTSGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EBSSCCEEEEGGGTBCTTEEECCCE--ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeCCCeEEEEEECCccCceEecCce--ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 5 55656899999875432111111 1100001124689999998888 9999999999988877777765
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=147.71 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=113.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCC--ce----------------------eec-----CCCcEEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDS--DK----------------------VVG-----NSPNLTL 595 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~--~~----------------------~~~-----~~~~L~I 595 (1011)
+...|..+.+.+|++++|.|.+.+. +.+.+.|+|... .. ... ...+|+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 4556788899999999999999875 667899998631 10 000 1237999
Q ss_pred eecCCCCCEEEEEEEEecC--C-CceeeEEEEEEc---------CCCe--eecCCceeeecCCcEEEEEEEEec-CCCCe
Q psy17146 596 LMTSDDLAGRYYCKASVMG--F-PEVGAEATVYLK---------GRPT--IISHRTQFGIPGDTARVECSAFSI-PPPEK 660 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~--~-~~~s~~~~l~V~---------~~P~--i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~ 660 (1011)
.+++.+|+|.|.|.+.+.+ . ......+.|.|. .+|. +..+....+..|+.++|.|.+.|. |.+..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 9999999999999999731 1 112234567775 1233 333344446679999999999987 76459
Q ss_pred EEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 661 VTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 661 v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
|+|++ ||+.+......... ..+ ......+.|.|..... | |.|+|.|.|..+..
T Consensus 164 v~W~~~~g~~l~~~~~~~~~-~~~-~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTL-KTN-DTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp EEEECTTSSCBCCCEECCCE-EET-TEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred EEEEccCCeEccccccceee-cCC-CCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 99999 88776521111111 110 0011246899988876 4 89999999998753
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=147.16 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=78.6
Q ss_pred ecCCCcEEEEEEccCCC---CCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 145 TTEDREIELECISANGK---PPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~---P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+|+.+.|.|.+. +. |.+ .++|+|+++.+....... .....+..+...+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 29 v~~G~~v~L~C~~~-g~~~~P~~~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~ 106 (239)
T 1i1c_A 29 LGGGLTPKVTCVVV-DISQNDPEVRFSWFIDDVEVHTAQTHA-PEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF 106 (239)
T ss_dssp TTSSSCCEEEEEEE-EECTTCCCCEEEEEESSCEECCCEECC-CEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred cccCCcEEEEEEEe-cCccCCCCCEEEEEECCccccCccccc-ceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccC
Confidence 67899999999954 54 766 999999987765432211 1112233445567899999999999999999999888
Q ss_pred CceeEEEEEE--EEEeCCceEEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 221 RTYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 221 ~~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
.......+.+ .+..+|.+.+....... ..|+.++|.|.+.+.++ ...++|++||++
T Consensus 107 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 165 (239)
T 1i1c_A 107 PAPIEKSISKPEGTPRGPQVYTMAPPKEE-MTQSQVSITCMVKGFYPPDIYTEWKMNGQP 165 (239)
T ss_dssp SSCEEEEECCCSSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred CCCcEEEEecCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeeeECCCeEEEEEECCEE
Confidence 6533333332 33345555443322111 12445555555555322 234555554443
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=157.69 Aligned_cols=196 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred CceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
..+.+..|++|+|.|.+.+.+ .+ .|.|++++..+.. ...++.. ..+.|.|.++...|+|.|+|. ..
T Consensus 14 ~~v~~~~G~~v~l~C~~~~~~~~~-~i~W~~~~~~~~~-~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~---~~ 80 (325)
T 1n26_A 14 GVLTSLPGDSVTLTCPGVEPEDNA-TVHWVLRKPAAGS-HPSRWAG--------MGRRLLLRSVQLHDSGNYSCY---RA 80 (325)
T ss_dssp TEEEECTTCCEEEECTTSCTTCCS-EEEEEEECSSSSC-CCEEEEE--------ESSEEEECSCCGGGCEEEEEE---SS
T ss_pred CcEECCCCCcEEEEeCCCCCCCCc-eEEEEECCccCCc-ccccccc--------ccceEEecccchhhCeEeEEE---eC
Confidence 444457999999999998876 56 9999998876532 1122221 136899999999999999999 37
Q ss_pred CCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccc-ccccccccccc-cCCCCCCCCcC
Q psy17146 715 GSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEH-HVTADGEKNQC-KESDNSSNISD 792 (1011)
Q Consensus 715 G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~-~~~~~s~~~~W-~~~d~~s~I~~ 792 (1011)
|...+.+.|.|. ..|.+|. +... .....++.++| ++.|++. .+.
T Consensus 81 g~~~~~~~L~V~--------------------------------~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~-~~~ 126 (325)
T 1n26_A 81 GRPAGTVHLLVD--------------------------------VPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSL-TTK 126 (325)
T ss_dssp SSCSCEEEEEEC--------------------------------CCCCCCC-CEEEBSSTTSCEEEEECCSSCCCT-TCE
T ss_pred CEEeeeEEEEec--------------------------------cCCCCCc-eeEEeecCCCcEEEEECCCCCCCC-Cce
Confidence 888888888874 2222454 4433 22355788899 6667664 478
Q ss_pred cceeeecCc----------------c-----------cccccccc---c---CCCCCCCcccccccccccccccccCCcc
Q psy17146 793 IKLEFRTGS----------------S-----------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVPMDQR 839 (1011)
Q Consensus 793 Y~ve~~~~~----------------~-----------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~ 839 (1011)
|.|+++... . .+++.|.| | +|.+......+.+...++..+|.++...
T Consensus 127 y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~ 206 (325)
T 1n26_A 127 AVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVT 206 (325)
T ss_dssp EEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEE
T ss_pred EEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEE
Confidence 988875320 0 16789999 5 6665432333445555667788887655
Q ss_pred cccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 840 YHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 840 ~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
.... +.+...|+|+||.....++.+++|.|+||+.+...
T Consensus 207 ~~~~-~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~ 245 (325)
T 1n26_A 207 AVAR-NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT 245 (325)
T ss_dssp ECTT-CTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSC
T ss_pred EecC-CCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCC
Confidence 4111 11244569999876666778899999999986544
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=145.97 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=76.3
Q ss_pred ecCCCcEEEEEEccCCC--C-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 145 TTEDREIELECISANGK--P-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~--P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..|+.+.|.|.+.+.. | ..+++|+|++.++............+ ..+...+.|.|.....+|.|.|+|+|.|..+.
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~ 114 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN-STYRVVSVLTVLHQDWLNGKEYKCKVSNKALP 114 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC----CEEEEEEEECCHHHHHHTCCEEEEEECC---
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCC-CeEEEEEEEEEechhccCCCEEEEEEEcCCCC
Confidence 55699999999966555 4 44899999998875532211112223 34555678999988889999999999998774
Q ss_pred ceeEEEEEE--EEEeCCceEEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 222 TYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 222 ~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
......+.+ .+..+|.+.+.......+ +|+.++|.|.+.++++ ...++|++||+.
T Consensus 115 ~~~~~~i~~~~~~~~~P~V~v~~~~~~~~-~g~~~~L~C~~~gf~P~~i~v~W~k~g~~ 172 (240)
T 4acp_A 115 APIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQP 172 (240)
T ss_dssp -CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ccccccccccCCCCCCCEEEEECCChHHh-cCCceEEEEEEeEEeCCCcEEEEEECCEE
Confidence 433444432 233456555443332222 2555666666655432 235555555543
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-13 Score=131.92 Aligned_cols=170 Identities=12% Similarity=0.147 Sum_probs=122.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+.++.+.|+++.|.+|+++.|+|++..+.+ .+.|.-.-. +. .... ..+...+.|.+++ +|++.|
T Consensus 2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~------------~~-~~~~-g~~~~~~~ls~vs-~d~~~~ 66 (196)
T 3bn3_B 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLR------------RN-GTQR-GLRWLARQLVDIR-EPETQP 66 (196)
T ss_dssp CSCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSE------------EE-EEEE-ETTEEEEEEEEEC-SSEECC
T ss_pred CcEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccC------------Ce-eEcc-ccCceEEEEEEEc-cCCCce
Confidence 456788899999999999999999987766 677753211 00 0111 1122248999999 888889
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~ 183 (1011)
.|.+.... ...+..+.|+|+..|..+.|...+. .+.+|+.++|+|.+.++.|... |+|+|++.++.... +.
T Consensus 67 ~C~~~c~~----~~~~~~v~l~Vy~~P~~v~i~~~~~-~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~-~~- 139 (196)
T 3bn3_B 67 VCFFRCAR----RTLQARGLIRTFQRPDRVELMPLPP-WQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS-FA- 139 (196)
T ss_dssp EEEEEETT----EEEEEECEEEEEBCCCCCEECCCCS-SEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE-CT-
T ss_pred EEEEECCC----CceEEEEEEEEecCCCcCEEccCCc-cccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc-cc-
Confidence 99987642 3467889999999999888876532 3678999999999888888755 89999998885432 11
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
...........++.+...+.+|...|+|+|.+..+
T Consensus 140 --~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 140 --GEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp --TSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred --cccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence 11111222346788887777777799999998766
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=145.39 Aligned_cols=172 Identities=18% Similarity=0.286 Sum_probs=111.4
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeE--EEEecCCc---eee-----------------------------cCCCcEEE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEI--TWIHEDSD---KVV-----------------------------GNSPNLTL 595 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v--~W~k~~~~---~~~-----------------------------~~~~~L~I 595 (1011)
..+.+.+|++++|.|.+.+.+ ...+ .|+|.... ... ....+|+|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (232)
T 3qhz_H 8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM 87 (232)
T ss_dssp CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence 346689999999999998643 2445 99985311 000 01135999
Q ss_pred eecCCCCCEEEEEEEEecCC-------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEE
Q psy17146 596 LMTSDDLAGRYYCKASVMGF-------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVT 662 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~-------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~ 662 (1011)
.+++.+|+|.|.|.+.+... ........|.|. .+|.|. ......+..|+.++|.|.+.+.++ ++.+.
T Consensus 88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~ 167 (232)
T 3qhz_H 88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 167 (232)
T ss_dssp CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence 99999999999999997310 223344567775 456666 344445677999999999998654 55788
Q ss_pred EEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 663 WSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+++|..+........ ...+ ......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 168 W~~~g~~~~~~~~~~~-~~~~-g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 168 WNSGALTSGVHTFPAV-LQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EGGGTBCTTEEECCCE-ECTT-SCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEECCEecceeeccce-eCCC-CCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 9999874422111100 1100 001124689999998889 99999999999988888777653
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=123.05 Aligned_cols=98 Identities=23% Similarity=0.357 Sum_probs=79.8
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. .+|+.+..+ .+.++|.|.+++.+|
T Consensus 9 ~~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~------~~~~~~~~~--~~~~~L~I~~v~~~D 80 (107)
T 3knb_B 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA------SERLSFPAD--GAEHGLLLTAALPTD 80 (107)
T ss_dssp -CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC------CSSEECCEE--TTEEEEEESSCCGGG
T ss_pred CCCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccc------eeeEEEeec--CceEEEEEecCChhh
Confidence 3446899999999999999999999999997 7889999999987743 356666544 356789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
+|.|+|.|.|.. +..+..+.|+|.++|
T Consensus 81 ~G~Y~C~a~N~~----G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 81 AGVYVCRARNAA----GEAYAAAAVTVLEPP 107 (107)
T ss_dssp CEEEEEEEEETT----EEEEEEEEEEEEC--
T ss_pred CEEEEEEEEECC----CEEEEEEEEEEEcCC
Confidence 999999999963 456777889998754
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=145.10 Aligned_cols=174 Identities=18% Similarity=0.321 Sum_probs=113.4
Q ss_pred CCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCce---ee---------------------------cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSDK---VV---------------------------GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~~---~~---------------------------~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+. +...+.|+|..... .+ ....+|+|.+
T Consensus 5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (248)
T 3u2s_H 5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS 84 (248)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 4567789999999999999863 45689999853210 00 1123599999
Q ss_pred cCCCCCEEEEEEEEecC---------------------CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMG---------------------FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECS 651 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~---------------------~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~ 651 (1011)
++.+|+|.|.|.+.+.. .........|.|. .+|.+. ......+..|+.++|.|.
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~ 164 (248)
T 3u2s_H 85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 164 (248)
T ss_dssp CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEE
T ss_pred CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEE
Confidence 99999999999998731 1123334567775 356665 334444567999999999
Q ss_pred EEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 652 AFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 652 ~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.+. |.+..+.|+++|..+....... ....+ ......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 165 ~~~~~P~~~~v~W~~~g~~~~~~~~~~-~~~~~-g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 165 VKDYFPEPVTVSWNSGALTSGVHTFPA-VLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp EEEEBSSCCEEEEGGGTBCTTEEECCC-EECTT-SCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred EeeEECCCeEEEEeECCccCceeecCc-eECCC-CCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 9985 5455899999987432211110 00000 001124689999988888 99999999999888777766654
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=140.90 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=114.9
Q ss_pred CceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--e-----------------------ee-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--K-----------------------VV-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~-----------------------~~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+. ....+.|+|.... . .. ....+|+|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 335779999999999999863 3468999975311 0 00 01124999999
Q ss_pred CCCCCEEEEEEEEecCC----C---ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEEEEE
Q psy17146 599 SDDLAGRYYCKASVMGF----P---EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSY 665 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~----~---~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~ 665 (1011)
+.+|+|.|.|.+.+... + .....+.|.|. .+|.+. ......+..|+.++|.|.+.+.++ +..+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-- 164 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 164 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence 99999999999997320 1 12244567774 356665 344444678999999999998643 447999
Q ss_pred CCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 666 RGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 666 ~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|..+.... ..... ..........+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 165 NSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp GGGTBCTTEEECCCE-ECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCcccCCCeEeCCce-ECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 665543210 00000 1100001124689999999999 99999999999888888877764
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-15 Score=150.25 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred cee-ecCCceEEEcCCCcEEEEEEEecCCC---CeEEEEecCCcee------e-c------CCCcEEEeecCCCCCEEEE
Q psy17146 545 PRF-RARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSDKV------V-G------NSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 545 P~~-~~~p~~~~v~~G~~~~l~C~~~g~p~---p~v~W~k~~~~~~------~-~------~~~~L~I~~v~~~d~G~Y~ 607 (1011)
|.+ ...|....+.+|++++|.|.+.+.+. +.|.| ++..... . . ....|+|.++..+|+|.|+
T Consensus 4 p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~ 82 (214)
T 1ow0_A 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFT 82 (214)
T ss_dssp CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEE
T ss_pred CEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEE
Confidence 444 45577778899999999999999865 68999 4432110 0 1 1236888888899999999
Q ss_pred EEEEecCCCceeeEEEE---EEcCCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccC--CCCeE
Q psy17146 608 CKASVMGFPEVGAEATV---YLKGRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGS--SDDYS 679 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l---~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~--~~~~~ 679 (1011)
|.|.|. .+.......| .+..+|.+. .+....+..|+.++|.|.+.|. |.+..|+|+|||..+.... ...+.
T Consensus 83 C~~~~~-~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~ 161 (214)
T 1ow0_A 83 CTAAYP-ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR 161 (214)
T ss_dssp EEECCS-SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred EEEecC-CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence 999984 2222222333 345678765 2333346789999999999996 5445999999999886431 01111
Q ss_pred EecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 680 VLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 680 ~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.. ....++ ..+.|.|......|.|.|+|.|.|....
T Consensus 162 ~~-~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 162 QE-PSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp EC-SCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred cc-ccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 11 000122 2345666665555689999999998754
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-13 Score=120.84 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=78.8
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 78 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQ--ESEHMKVEN----SENGSKLTILAARQEHCGCY 78 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCC--CSSSEEEEE----CSSEEEEEETTCCTTTCEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECc--CCCCEEEEE----cCCEEEEEECCCChhcCEEE
Confidence 467777 4567789999999999999999999 999999999987 345666654 23357999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 79 ~C~a~N~~g~~~~~~~l~V~ 98 (114)
T 2cqv_A 79 TLLVENKLGSRQAQVNLTVV 98 (114)
T ss_dssp EEEEECSSCEEECCEEEEEE
T ss_pred EEEEEECCCcEEEEEEEEEE
Confidence 99999999999999999884
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-15 Score=134.69 Aligned_cols=111 Identities=34% Similarity=0.639 Sum_probs=92.3
Q ss_pred ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEc
Q psy17146 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
+.++.+.|.|..+|.|..+....+.+|+.+.|.|.+.|.|.|..|.|++++..+......++.+......++..+.|.|.
T Consensus 2 s~~~~~~l~V~~~P~i~~~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 81 (122)
T 2cry_A 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS 81 (122)
T ss_dssp CSSCCCCCCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred ccceEEEEEEecCCCccCCCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence 45667788999999998766778999999999999999999944999999999875445677765332223446799999
Q ss_pred CCCCCCC-EEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 697 ESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 697 ~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
++..+|+ |.|+|.|.|.+|.+++.+.|.|.+
T Consensus 82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~ 113 (122)
T 2cry_A 82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113 (122)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred CCChhhCCceEEEEEECCCCeEEEEEEEEECC
Confidence 9999999 999999999999999999998864
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=149.82 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=113.6
Q ss_pred cCCceEE-EcCCCcEEEEEEEecC-CCC---eEEEEecCCceee---------c-----CCCcEEEeecCCCCCEEEEEE
Q psy17146 549 ARPYSVQ-VDRGAGVNLLCDVDGN-PAP---EITWIHEDSDKVV---------G-----NSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 549 ~~p~~~~-v~~G~~~~l~C~~~g~-p~p---~v~W~k~~~~~~~---------~-----~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
..|.... +.+|++++|.|.+.|. |.| .|.|+|++..... . ....|.|..+..+|+|.|+|.
T Consensus 172 ~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~ 251 (376)
T 2aty_A 172 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR 251 (376)
T ss_pred eCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEE
Confidence 3444344 7889999999999988 333 6999999854311 0 123799999999999999999
Q ss_pred EEecCC-CceeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 610 ASVMGF-PEVGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 610 a~n~~~-~~~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
|.|... ......+.+ .+..+|.+.. +.......|+.++|.|.+.|. |+.+.|+|+|||+++............+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~d- 330 (376)
T 2aty_A 252 VNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTN- 330 (376)
T ss_pred EecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCC-
Confidence 998422 222333333 5567888763 334445569999999999996 4445899999999875321111111111
Q ss_pred cCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
......+.|.|.....+|.|.|+|.|.|..-.
T Consensus 331 gty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 331 ESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred CCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 00113467888888888899999999998754
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-14 Score=143.84 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=114.4
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-C---CeeEEeeCCeecCCc-ccC---CCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-T---GVLQWTKDDFALGPH-RNL---SGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~---~~v~W~k~~~~l~~~-~~~---~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
+...|..+.+.+|++++|.|.+.+. . ..|.| ++ ..+... ... ...+++ ....+|+|.+++.+|
T Consensus 7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~-------~~~~~L~I~~~~~~D 77 (214)
T 1ow0_A 7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCY-------SVSSVLPGCAEPWNH 77 (214)
T ss_dssp EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCC-------CEEEECTTTHHHHHH
T ss_pred EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcE-------EEEEEEEEeHHHcCC
Confidence 4456888899999999999999873 2 58999 44 333211 000 011111 134579999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeec
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSN 178 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~ 178 (1011)
+|.|+|.+.+..... .....+.+.....+|.+. .+....+.+|+.+.|.|.+.+.+|+ ++|+|+||+..+..+
T Consensus 78 ~g~Y~C~~~~~~~~~----~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 153 (214)
T 1ow0_A 78 GKTFTCTAAYPESKT----PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 153 (214)
T ss_dssp TCEEEEEECCSSCSS----CEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred CCeEEEEEecCCCCC----ceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence 999999998864221 111223221223344442 2223345689999999995544675 599999999877554
Q ss_pred eeEEE-eeec---CCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 VRVTE-EASV---DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 ~~~~~-~~~~---~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..... .... ....+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 154 ~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~ 201 (214)
T 1ow0_A 154 KYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL 201 (214)
T ss_dssp GSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred ceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence 21111 1111 23355666788888877778999999999986643
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=135.37 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=113.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC----C--cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+...|..+.+.+|++|+|.|.+.+. ...+.|+|... .+. . .......+|+.+..+...+.++|+|.++
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 82 (229)
T 1hxm_A 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (229)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence 35667889999999999999999853 35799998642 110 0 0011124788887655567789999999
Q ss_pred ccCCCceEEEEEEeCCC----CCcceeeeEEEEEEEcC---CCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 98 MLDDDARYQCQVSTGIL----GEPAIRSRFATLTVLVP---PDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~----~~~~~~s~~~~l~V~~~---p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
+.+|+|.|.|.+.+... .........+.|+|... +.+|.+ .+..+ .+.|.|.+.+.+|.+ .++|+
T Consensus 83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v------~~~~~-~~~L~C~~~g~~P~~i~v~W~ 155 (229)
T 1hxm_A 83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSV------FVMKN-GTNVACLVKEFYPKDIRINLV 155 (229)
T ss_dssp CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEE------EEEEE-TTEEEEEEESCBSSCCEEEEE
T ss_pred CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcE------EEcCC-CCeEEEEEEEEeCCCEEEEEe
Confidence 99999999999987521 01112233467888752 223333 22222 248999966667765 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++ +.+..+.... ....++.. ... .....+|.|.|+|.+.|..+
T Consensus 156 ~~-~~~~~~~~~~-~~~~dg~y-~~~-----~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 156 SS-KKITEFDPAI-VISPSGKY-NAV-----KLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp CS-SEEEECCCEE-EECTTSSE-EEE-----EEEEETTTTTCEEEEEETTE
T ss_pred cC-CEEecCccce-EECCCCcE-EEE-----ECcccCCCCcEEEEEEeCCC
Confidence 99 7765432221 22334422 111 12233789999999999754
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=119.10 Aligned_cols=95 Identities=24% Similarity=0.238 Sum_probs=80.0
Q ss_pred EcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+..+|.|. .+....+.+|+.+.|.|.+.|.|.| .+.|+|+|..+.. ..++.+.. .+....|.|.++..+|+|
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~--~~~~~~~~----~~~~~~L~i~~~~~~D~G 77 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQE--SSKIHYTN----TSGVLTLEILDCHTDDSG 77 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEE----ETTEEEEEECSCCGGGCE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCC--CCCEEEEE----CCCEEEEEEcCCCcccCE
Confidence 34567776 4567789999999999999999999 9999999999874 45666654 334578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|.|.|..|..+..+.|.|.+
T Consensus 78 ~Y~C~a~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 78 TYRAVCTNYKGEASDYATLDVTG 100 (103)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCcEEEEEEEEEEC
Confidence 99999999999999999998864
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=114.62 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=75.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.++|.|...+.++.+.+|++|+|.|.+.++.+.+.|+|+|..+.. .+|+.+..++ +.++|.|.+++.+|+|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~v~W~k~g~~i~~------~~~~~i~~~g--~~~~L~I~~v~~~D~G~ 74 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAA------SPDCEIIEDG--KKHILILHNCQLGMTGE 74 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESSSSCCCEEEETTEECCC------BTTEEEEEET--TEEEEEECSCCGGGCEE
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECCCCCeEEEEECCEECcC------CCCEEEEEEC--CEEEEEECCCChhhCEE
Confidence 467899999999999999999999999987789999999987743 3577766543 45689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
|+|.+.|. ...+.|+|..
T Consensus 75 Y~C~a~n~--------~~sa~L~V~~ 92 (93)
T 1waa_A 75 VSFQAANT--------KSAANLKVKE 92 (93)
T ss_dssp EEEEETTE--------EEEEEEEEEC
T ss_pred EEEEECCC--------cEEEEEEEEc
Confidence 99999763 3567888875
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-13 Score=148.05 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=115.6
Q ss_pred eeecCCcee-EEecCcEEEEEEEcCCC--C---eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 30 FAMEPQDQT-AVVGSRVTLPCRVIDKT--G---VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 30 ~~~~p~~~~-v~~G~~v~L~C~v~~~~--~---~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
|...|.... +.+|++++|.|.+.+.. + .|.|+|++..+...... ....+.........+|.|.+++.+|+|
T Consensus 170 ~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~~~D~g 246 (376)
T 2aty_A 170 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQ---PREEQFNSTFRSVSELPIMHQDWLNGK 246 (376)
T ss_pred EEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccC---CCCcccCCcEEEEEEEEechHhccCCC
Confidence 345555555 89999999999998642 2 69999998654211100 000000011112347999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~ 181 (1011)
.|+|++.+...... ....+.+. .....+|.+. ..+.....+|+.+.|.|.+.+.+| .++|+|+||+..+......
T Consensus 247 ~Y~C~~~~~~~~~~--~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~ 323 (376)
T 2aty_A 247 EFKCRVNSAAFPAP--IEKTISKT-KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNT 323 (376)
T ss_pred EEEEEEecCCCCCc--eEEEEcCC-CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeC
Confidence 99999988643221 11112111 1122233332 223333446899999999544455 5799999999877443222
Q ss_pred EEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
......++ .+...+.|.|.....+|.|.|+|.|.|....
T Consensus 324 ~~~~~~dg-ty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 324 QPIMNTNE-SYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred CceECCCC-CEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 21223333 5566788999998889999999999997653
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=115.82 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ..++.+... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~--~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIER--SDRIYWYWP---EDNVCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEEE---ETTEEEEEECSCCGGGCEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCC--CCCEEEEEc---CCCEEEEEECCCCcCCCEEE
Confidence 356665 4567789999999999999999999 9999999999874 344444321 23357899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|.....+.|.|.+
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 78 MVKAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCcEEEEEEEEEec
Confidence 999999999999999998853
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=115.11 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+... ..++.+.. .+...+|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~-~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y 77 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPD-QRRFAEEA----EGGLCRLRILAAERGDAGFY 77 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCB-TTEEEEEC----GGGEEEEEESSCCGGGCEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCC-CCEEEEEC----CCCEEEEEEccCCcCCCEEE
Confidence 456666 4566789999999999999999999 99999999998742 23444433 33456899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|.+
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 78 TCKAVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCceeEEEEEEEEC
Confidence 999999999999999998853
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=117.78 Aligned_cols=85 Identities=20% Similarity=0.414 Sum_probs=74.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.||.|...|.++.+.+|+.+.|.|.+.|.|.|.++|+|++..+.. ....+|.|.++..+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 478999999999999999999999999999999999999855421 123579999999999999999999
Q ss_pred ecCCCceeeEEEEEEcC
Q psy17146 612 VMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~ 628 (1011)
| ..|..+..+.|.|+.
T Consensus 84 N-~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 84 N-EFGSDSATVNIHIRS 99 (100)
T ss_dssp E-TTEEEEEEEEEEEEC
T ss_pred E-CCCEEEEEEEEEEEE
Confidence 9 678888899998863
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=138.35 Aligned_cols=172 Identities=20% Similarity=0.342 Sum_probs=109.9
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc---e-e---------------------e-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD---K-V---------------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~---~-~---------------------~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+.. ...+.|+|.... . . . ....+|+|.+++
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (256)
T 3sob_H 31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR 110 (256)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence 345789999999999998643 468999985311 0 0 0 011349999999
Q ss_pred CCCCEEEEEEEEecC----------CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEE
Q psy17146 600 DDLAGRYYCKASVMG----------FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTW 663 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~----------~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W 663 (1011)
.+|+|.|.|.+.+.+ .........|.|. .+|.|. ..+...+.+|+.++|.|.+.+. |.+..+.|
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W 190 (256)
T 3sob_H 111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 190 (256)
T ss_dssp GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE
T ss_pred cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE
Confidence 999999999998732 1123334466664 356665 3344456789999999999985 54558999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|..+....................+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 191 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 191 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp --GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred --CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 6554432100000001100001124689999999999 99999999999888777777654
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-13 Score=136.32 Aligned_cols=169 Identities=16% Similarity=0.280 Sum_probs=109.5
Q ss_pred ceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc----ee---------------------e-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD----KV---------------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~----~~---------------------~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+. +...+.|+|.... .. . ....+|+|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (226)
T 3mlr_H 8 GGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ 87 (226)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred CCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 35789999999999999764 3568999985311 00 0 012349999999
Q ss_pred CCCCEEEEEEEEecCC--------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEE
Q psy17146 600 DDLAGRYYCKASVMGF--------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSY 665 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~--------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~ 665 (1011)
.+|+|.|.|.+.+... ........|.|. .+|.|. .+....+..|+.++|.|.+.+. |.+..+.|
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-- 165 (226)
T 3mlr_H 88 ASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 165 (226)
T ss_dssp GGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred cccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence 9999999999987310 111233456663 456665 2334445689999999999986 43558999
Q ss_pred CCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 666 RGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 666 ~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++..+.... ..... ..........+.|.|.....+| |.|+|.|.|..+.......|.
T Consensus 166 ~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~ 223 (226)
T 3mlr_H 166 NSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 223 (226)
T ss_dssp GGGTCCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred CCccccCCeEeCCcE-ECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEcc
Confidence 544332100 00000 0100001124689999999889 999999999998776665553
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=114.11 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECC--eEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG--EEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|.|. .+....+.+|+.+.|.|.+.|.|.| .++|+|+| ..+.. ...+. . ....+.|.|.++..+|+|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~--~~~~~--~----~~~~~~L~i~~~~~~D~G~ 72 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAP--ELLVD--A----KSSTTSIFFPSAKRADSGN 72 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCST--TSEEE--E----ETTEEEEECTTBCGGGCEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCC--cEEEE--e----cCCEEEEEECCCChhcCEE
Confidence 57776 3456779999999999999999999 99999999 87753 22222 1 1235789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|.|..|.++..+.|.|+
T Consensus 73 Y~C~a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 73 YKLKVKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEcCCCeEEEEEEEEEC
Confidence 999999999999999998873
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=115.15 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=76.9
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.......+.... .....|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y 77 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSE-----KGLHSLIFEVVRASDAGAY 77 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEET-----TTEEEEEESSCCGGGCEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcC-----CCeEEEEECCCCcccCEEE
Confidence 467766 4567789999999999999999999 99999999998754333333222 2346899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|.+
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 78 ACVAKNRAGEATFTVQLDVLA 98 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEEEEEe
Confidence 999999999999999998853
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=114.06 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=78.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. .+....|.|.++..+|+|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~--~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y 77 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAIT--QGGKYKLSE----DKGGFFLEIHKTDTSDSGLY 77 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECc--CCCCEEEEE----eCCEEEEEECCCCcccCEEE
Confidence 456666 4467789999999999999999999 999999999987 446666654 23456899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 78 TCTVKNSAGSVSSSCKLTIK 97 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCcEeEEEEEEEE
Confidence 99999999999999999875
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=115.21 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=74.6
Q ss_pred EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCe--EEecCCcCccceeEEEEcCCCCCCC
Q psy17146 626 LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY--SVLEDPLKEGIKSTLIIRESRHDHF 703 (1011)
Q Consensus 626 V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~d~ 703 (1011)
|..||.|..... ...|+.+.|.|.+.|.|.| .++|+|||+.+..+ .++ .+... ......+.|.|.++..+|+
T Consensus 1 V~~pP~i~~~~~--~~~~~~~~~~c~v~G~P~P-~i~W~k~g~~l~~~--~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~ 74 (103)
T 1wwb_X 1 VHFAPTITFLES--PTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNES--KYICTKIHVT-NHTEYHGCLQLDNPTHMNN 74 (103)
T ss_dssp CCCCCCCCCCCC--CCCCCEEEEEEEEECSSCC-EEEEEETTEEECCC--SSEEEEEEEE-CSSEEEEEEEEESCCGGGC
T ss_pred CCCCCEEEeccC--ceECcEEEEEEEEEEeCCC-EEEEEECCEECCCC--CcEeEEEEec-CCcEEEEEEEECCCCcccC
Confidence 456788763322 3468889999999999999 99999999999743 332 22111 1112356799999999999
Q ss_pred EEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 704 GVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 704 G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|+|.|+|.+|.++.++.|.|.+.
T Consensus 75 G~Y~C~A~N~~G~~~~~~~l~V~~~ 99 (103)
T 1wwb_X 75 GDYTLIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp EEEEEEEECSSCEEEEEEEECCSCC
T ss_pred EEEEEEEEeCCCcEeEEEEEEECCC
Confidence 9999999999999999999998643
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=130.46 Aligned_cols=160 Identities=13% Similarity=0.229 Sum_probs=103.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--c-ee---------------e------cCCCcEEEeecCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--D-KV---------------V------GNSPNLTLLMTSDDL 602 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~-~~---------------~------~~~~~L~I~~v~~~d 602 (1011)
+...|..+.+.+|++++|.|.+.+.. +.+.|+|... . .. . ....+|+|.+++.+|
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 45567788999999999999998765 5899998642 1 10 1 112479999999999
Q ss_pred CEEEEEEEEecCC--------Cc--eeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 603 AGRYYCKASVMGF--------PE--VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~--------~~--~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
+|.|.|.+.+... .. ....+.|.|...+....++...+..+ .++|.|.+.|. |.+..|+|+++ ..+.
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~ 160 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIV 160 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cccc
Confidence 9999999998321 11 22345777765322222222223222 37999999986 44239999999 7765
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCC-CCCEEEEEEEEcCCCCe
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRH-DHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~ 717 (1011)
.. ........ + +.+.+..... +|.|.|+|.|.|..+..
T Consensus 161 ~~-~~~~~~~~----~---g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 161 EF-DPAIVISP----S---GKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EC-CCEEEECT----T---SSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred CC-ccceEEcC----C---CcEEEEEeecccCCCcEEEEEEECCccE
Confidence 32 11111111 1 2333333443 67899999999998643
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=114.30 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=79.7
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++++.+|++++|.|.+ .+.+.+.|+|+|..+. ..+|+.+..+ .+..+|.|.+++.+|+|
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v-~p~p~v~W~k~g~~l~------~~~r~~i~~~--~~~~~L~I~~v~~~D~G 74 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI-SENIPGKWTKNGLPVQ------ESDRLKVVQK--GRIHKLVIANALTEDEG 74 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC-SSCCCEEEEETTEECC------CCSSEEEEEC--SSEEEEEESSCCGGGCS
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe-CCCCeEEEEECCEECC------CCCcEEEEEe--CCEEEEEECCCChhhCE
Confidence 4557899999999999999999999999 8888999999998774 2357777654 35678999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
.|+|.+.|. ..+..+.|+|.++|.
T Consensus 75 ~Y~C~a~N~------~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 75 DYVFAPDAY------NVTLPAKVHVISGPS 98 (100)
T ss_dssp EEEEEESSS------CCCEEEEEEEECCSC
T ss_pred EEEEEEcCC------CeeEEEEEEEeCCCC
Confidence 999999885 246778999998764
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=120.36 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=110.3
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-cC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-GN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
...|.+..+.+|+++.|.|.+....+..+.|...-..... .. ...|.|.+++. | |.|.|.+.+ .....++.++
T Consensus 3 ~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c-~~~~~~~~~~ 79 (185)
T 1iam_A 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNC-PDGQSTAKTF 79 (185)
T ss_dssp EEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEEC-SSCEEEEECE
T ss_pred EEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEEC-CCCceEEEEE
Confidence 3456778899999999999997543334777643322223 22 24699999984 4 999999976 4457888999
Q ss_pred EEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 624 VYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 624 l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|.|..+|... .+....+.+|+.++|.|.+.|..++ +.|+|||+++.+..... ..+....+|++.. .
T Consensus 80 l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~---------~~~~~~~tl~~~~-~ 149 (185)
T 1iam_A 80 LTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---------VGEPAEVTTTVLV-R 149 (185)
T ss_dssp EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---------CTTTEEEEEEEEC-C
T ss_pred EEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC---------CCccccEEEEEec-e
Confidence 9998877654 3344458999999999999986443 25899999999864210 0112234677664 4
Q ss_pred CCCCE-EEEEEEEcCCCC
Q psy17146 700 HDHFG-VYNCSVSNPYGS 716 (1011)
Q Consensus 700 ~~d~G-~Y~C~a~N~~G~ 716 (1011)
++|.| .|+|.|.|.++.
T Consensus 150 reD~g~~~sC~A~~~l~~ 167 (185)
T 1iam_A 150 RDHHGAQFSCRTELDLRP 167 (185)
T ss_dssp SSCSSCEEEEEEEEECGG
T ss_pred eccCCCeEEEEEEecCcc
Confidence 45555 999999999983
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=113.79 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=77.7
Q ss_pred cCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ...++.+..+ +.|.|.++..+|+|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~-~~~~~~~~~~-------~~L~i~~v~~~d~G~ 76 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPG-RDPRATIQEQ-------GTLQIKNLRISDTGT 76 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESS-SCSSCEECTT-------CCEEEESCCTTTCCE
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCC-CCCCEEEcCC-------CEEEEccCCcccCEE
Confidence 3577777 4567789999999999999999999 8999999999874 3445555432 579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEecC
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|.|..|..+..+.|.|.+
T Consensus 77 Y~C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 77 YTCVATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EEEEEECSSCCCBCCEEEEEES
T ss_pred EEEEEEcCCCCEEEEEEEEEec
Confidence 9999999999999999998864
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=117.89 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=68.2
Q ss_pred EEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.+.|.+..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ..++.+... .+.|.|.++.
T Consensus 2 ~~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~--~~~~~~~~~------~~~L~i~~v~ 72 (108)
T 3kvq_A 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVE--DSGIVLKDG------NRNLTIRRVR 72 (108)
T ss_dssp ---------CCCBSCCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCC--BTTEEEETT------TTEEEECSCC
T ss_pred ceeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEccc--CCCeEEeCC------CcEEEEeecC
Confidence 3567778889887 4567789999999999999999999 8999999998863 334444332 3689999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 73 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 100 (108)
T 3kvq_A 73 KEDEGLYTCQACSVLGCAKVEAFFIIEG 100 (108)
T ss_dssp GGGCEEEEEEEC----CEEEEEEEEEEC
T ss_pred cccCEEEEEEEEeCCCceEEEEEEEEeC
Confidence 9999999999999999999999999864
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=115.96 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=78.0
Q ss_pred EcCCCeeec----CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 626 LKGRPTIIS----HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 626 V~~~P~i~~----~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+..+|.|.. +....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ..++.+.. ....+.|.|.++..+
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~---~~~~~~~~----~~~~~~L~i~~~~~~ 89 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLD---TSRVHVRT----SDFDTVFFVRQAARS 89 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECC---CSSCEEEE----CSSEEEEEESSCCTT
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCC-EEEEEECCEECC---CCcEEEEE----CCCeEEEEECCCChh
Confidence 345788752 356789999999999999999999 999999999986 23444443 233578999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 90 D~G~Y~C~a~N~~G~~~~~~~l~V~~ 115 (118)
T 2e7c_A 90 DSGEYELSVQIENMKDTATIRIRVVE 115 (118)
T ss_dssp TCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999999998864
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=115.75 Aligned_cols=96 Identities=27% Similarity=0.497 Sum_probs=80.4
Q ss_pred cCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..+|.|. .+.+..+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ...++.+..+ .....+|.|.++..+|+|.
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQF-NTDRISLYQD---NTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCC-CBTTEEEEEC---TTCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcC-CCCeEEEEeC---CCCeEEEEECCCCcccCEE
Confidence 3467776 4577889999999999999999999 9999999999874 3456666553 2234589999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEecC
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|.|..|..+..+.|.|..
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~ 109 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTA 109 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEcCCCeEEEEEEEEEeC
Confidence 9999999999999999998854
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-12 Score=114.03 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=71.7
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEE--ecC-CcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV--LED-PLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~~-~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.||.|.... ...+..+.|.|.+.|.|.| +|+|+|||++|.. ..++.+ ... .......+.|.|.++...|+|
T Consensus 3 ~pP~I~l~~---~~~~~~~~l~c~v~G~P~P-~I~W~knG~~l~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 76 (126)
T 1he7_A 3 MPASVQLHT---AVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76 (126)
T ss_dssp CCCCCCCCC---CCCCCEEEEEEEECCSSCC-EEEEEETTEECCC--CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred CCCEEEccC---CccCccEEEEEEEeeeCCC-eEEEEECCEECCC--CCceeEEEeeccccccccceEEEECcCCCCCCE
Confidence 567763222 3367889999999999999 9999999999974 333322 211 011123578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|+|+|.+|.+++++.|.|.+
T Consensus 77 ~YtC~A~N~~G~~~~t~~l~v~~ 99 (126)
T 1he7_A 77 NYTLLAANPFGQASASIMAAFMD 99 (126)
T ss_dssp EEEEEEEETTEEEEEEEEECCCS
T ss_pred EEEEEEEECCCeEEEEEEEEEEc
Confidence 99999999999999999998753
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=113.88 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=74.8
Q ss_pred EcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+... .. ... .....|.|.++..+|+|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~-~~~------~~~~~L~i~~v~~~D~G 77 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYA--RS-TCE------AGVAELHIQDALPEDHG 77 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSC--CC-EEE------TTEEEEEECSCCTTCCB
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECccc--ce-Eee------CCeEEEEECCCChhhCE
Confidence 45677777 4567789999999999999999999 89999999988632 21 221 22578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|..|..+..+.|.|
T Consensus 78 ~Y~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 78 TYTCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp CEEEEEECSSCEEEEECCEEE
T ss_pred EEEEEEEECCCeEEEEEEEEE
Confidence 999999999999999888876
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=115.07 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=79.3
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .|.|+|+|..+.. ...++.+..+ ......|.|.++..+|+|.|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~-~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISP-KSDHYTIQRD---LDGTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCC-EEEEECSSCBCCT-TCSSEEEEEC---TTCEEEEEESSCCTTTCSCC
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCC-CCCeEEEEEC---CCcEEEEEECCCChhhCEEE
Confidence 567776 4567789999999999999999999 9999999999874 3456666543 22346899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|..
T Consensus 82 ~C~a~N~~g~~~~~~~l~V~~ 102 (110)
T 2dm2_A 82 TIMAANPQGRISCTGRLMVQA 102 (110)
T ss_dssp EEEEECTTCCEEECCCEEEEC
T ss_pred EEEEEECCCeEEEEEEEEEEC
Confidence 999999999999999998853
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=108.90 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=67.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
++.++.+.+|++++|.|.+.++.+.+.|+|||..+.. .+++.+..++ +.++|+|.+++.+|+|.|+|.|.+.
T Consensus 2 ~lt~v~~~~G~~v~l~C~vs~p~p~v~W~k~g~~l~~------~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~ 73 (84)
T 2lu7_A 2 HMTRVRSTPGGDLELVVHLSGPGGPVRWYKDGERLAS------QGRVQLEQAG--ARQVLRVQGARSGDAGEYLCDAPQD 73 (84)
T ss_dssp -CCCEEECTTSCEEEECCCSCCSTTCEEEETTEECCC------CSSEEEEECS--SCEEEEESSCSSTTCEEEEEECTTT
T ss_pred CCeEEEEecCCCEEEEEEECCCCcEEEEEECCEEccc------cccEEEeecC--CeEEEEecCCCCcccEEEEEEECCE
Confidence 3578899999999999999888889999999988743 3567766543 5678999999999999999998552
Q ss_pred CCCCcceeeeEEEEEEEcC
Q psy17146 113 ILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 113 ~~~~~~~~s~~~~l~V~~~ 131 (1011)
+..+.|+|.+|
T Consensus 74 --------~~~a~l~V~eP 84 (84)
T 2lu7_A 74 --------SRIFLVSVEEP 84 (84)
T ss_dssp --------CEEEEEEECCC
T ss_pred --------EEEEEEEEECC
Confidence 45578888653
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=108.06 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=74.4
Q ss_pred cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.+..+.+|+.++|.|.+.|. |.| .+.|+|++..+. ...++.+.. .+....|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE--NSEKYEITY----EDGVAILYVKDITKLDDGTYRCKVVN 79 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTC-EEEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCC-EEEEEECCEECc--CCCCEEEEE----cCCeEEEEEecCChhhCeEEEEEEEC
Confidence 4567789999999999999997 888 999999999887 445666543 22356999999999999999999999
Q ss_pred CCCCeEEEEEEEecC
Q psy17146 713 PYGSDSVEIMLKPQK 727 (1011)
Q Consensus 713 ~~G~~~~~~~l~V~~ 727 (1011)
..|..+..+.|.|.+
T Consensus 80 ~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 80 DYGEDSSYAELFVKG 94 (97)
T ss_dssp SSCEEEEEEEEEETT
T ss_pred CCCeEeEEEEEEEEe
Confidence 999999999999864
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=148.97 Aligned_cols=206 Identities=6% Similarity=-0.067 Sum_probs=145.6
Q ss_pred eeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEc
Q psy17146 618 VGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 618 ~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
-+....+.+..+..+. .|.+..+.+|++++|.|.+. .+ .|.|++||..+... .+ .+..+.|+|.
T Consensus 192 Ws~~~~~~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~-~I~W~~ng~~i~~~-----ri------~~~~~~L~I~ 256 (488)
T 2q7n_A 192 WSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSP---TK-VLSGQIGNTLRPLI-----HL------YGQTVAIHIL 256 (488)
T ss_dssp CCCCEECCCCCCSSCCEECTTCEEESSCCCEEEECCS---SC-EEEEEETTEECCCE-----EC------SSSCEEEECC
T ss_pred CCChhhcCCcCCCceEECCCCCEEcCCCCEEEEEECC---CC-EEEEEECCEECchh-----hc------cceEEEEEEe
Confidence 3444444555555554 56677789999999999988 45 89999999887632 11 2346899999
Q ss_pred CCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccccccccc
Q psy17146 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADG 776 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s 776 (1011)
++...|+|.|.|.+.+ +.....+.|.| ...|.+|.++........+
T Consensus 257 nl~~sd~g~y~~~C~~--~~~i~~~~l~v--------------------------------~~pP~~P~nl~C~~~~~~s 302 (488)
T 2q7n_A 257 NIPVSENSGTNIIFIT--DDDVYGTVVFA--------------------------------GYPPDVPQKLSCETHDLKE 302 (488)
T ss_dssp SCCCCCSSCEEEEEEE--SSCEEEEEEEE--------------------------------ECCCCCCCSCEEEBSSSSE
T ss_pred CCCcccCCcEEEEEEc--CCeEEEEEEEe--------------------------------eCCCCCCcccEEEEcCCCE
Confidence 9999999988888773 33334555554 2233488999888778889
Q ss_pred ccccc-cCCCC---CCCCcCcceeeecCcc---------------------cc-cccccc---c---CCCCCCCcccccc
Q psy17146 777 EKNQC-KESDN---SSNISDIKLEFRTGSS---------------------VS-NVHLDY---A---GHDSETGSESVHT 824 (1011)
Q Consensus 777 ~~~~W-~~~d~---~s~I~~Y~ve~~~~~~---------------------~p-~~~Y~f---A---~G~g~~ss~~~~t 824 (1011)
+.++| ++.+. |++++.|.|+++.... .+ .+.|.| | .|.+ ++...+.+
T Consensus 303 vtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~-~S~~~~~~ 381 (488)
T 2q7n_A 303 IICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQA-QSAVVINV 381 (488)
T ss_dssp EEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEE-EEEEECCG
T ss_pred EEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCc-cceEEEEe
Confidence 99999 76665 3689999999864311 23 488999 5 5652 33455666
Q ss_pred cccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 825 RIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 825 ~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
.+.++..||.++.+... +.+...|+|+||.. .+|.+++|.|+||+.+..
T Consensus 382 ~~~v~P~PP~nl~v~~~---s~~sl~LsW~pP~~--~~g~~l~YeV~Yr~~~~~ 430 (488)
T 2q7n_A 382 TERVAPHDPTSLKVKDI---NSTVVTFSWYLPGN--FTKINLLCQIEICKANSK 430 (488)
T ss_dssp GGTBCCCCCEEEEEEEC---STTCEEEEEEEEEE--CSSSEEEEEEEEBCTTSC
T ss_pred cCCCCCCCCeEEEEEec---CCCEEEEEEeCCCC--CCCcceEEEEEEEECCCC
Confidence 77788889998876551 12334569999754 468899999999987654
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=133.01 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=117.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---------------CCeeEEeeCC--ee--cCCccc-----C-CCC-cceEEeec--
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---------------TGVLQWTKDD--FA--LGPHRN-----L-SGF-DRYAMIGS-- 84 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---------------~~~v~W~k~~--~~--l~~~~~-----~-~~~-~r~~i~~~-- 84 (1011)
.+..+.+.+|++|+|+|..... ...+.|++.. .. +..+.. . ... .+..+...
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 5678999999999999998731 2369999753 21 111110 0 011 12222211
Q ss_pred -----CCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC-cEEEEEEcc
Q psy17146 85 -----DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR-EIELECISA 158 (1011)
Q Consensus 85 -----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~-~v~L~C~~~ 158 (1011)
...++.+|+|.+++.+|+|.|+|.+.+.. ......+.|.|..+|.. .+...+...+..|+ .+.|.|.+.
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~----~~~~~~v~L~V~~pP~V-~v~p~~~~~~~~G~~~vtL~C~a~ 318 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY----LQGQVTLELAVYKPPKV-SLMPATLARAAPGEAPPELLCLVS 318 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCEE-EEESSSCCCCCTTCCCCCEEEEEE
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEecc----cceeEEEEEeeccCCeE-eeccCcceeecCCCccEEEEEEec
Confidence 12367899999999999999999998753 23455678888875431 22222222245676 799999977
Q ss_pred CCCCC--cEEEEE-eCCc--e-eeec-ee-EEEeeecCCceEEEEEEEEEeeccC-cCCcEEEEEEEeCCCCc-eeEEEE
Q psy17146 159 NGKPP--AEITWI-DGTG--T-VMSN-VR-VTEEASVDGRRTTVKSTLVLTPKKE-HHNTTFTCQAQNTADRT-YKVARL 228 (1011)
Q Consensus 159 ~g~P~--~~i~W~-k~~~--~-l~~~-~~-~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~g~~-~~s~~v 228 (1011)
+.+|. ++++|+ |++. . +... .. ...........+...+.|.|...+. ++.+.|+|.+.|..-.. .++..+
T Consensus 319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sV 398 (401)
T 3f8u_B 319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEV 398 (401)
T ss_dssp EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEE
T ss_pred CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEE
Confidence 66787 899995 8752 1 2111 11 1111122233567778899887643 44569999999976332 334444
Q ss_pred E
Q psy17146 229 K 229 (1011)
Q Consensus 229 ~ 229 (1011)
+
T Consensus 399 t 399 (401)
T 3f8u_B 399 T 399 (401)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=115.43 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=75.9
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+.|.|..||.|.......+ .+...|.|.+.|.|.| .++|+|+|+.+... .++.+..........+.|.|.++..+
T Consensus 1 v~L~V~~pP~i~~~~~~~~--~~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~ 75 (118)
T 1wwc_A 1 VALTVYYPPRVVSLEEPEL--RLEHCIEFVVRGNPPP-TLHWLHNGQPLRES--KIIHVEYYQEGEISEGCLLFNKPTHY 75 (118)
T ss_dssp ---CCCCCCCCCCCCCCCC--CCEEEEEEEEECSSCC-EEEEEETTEECCCS--SSEEEEEEECSSEEEEEEEEESCCGG
T ss_pred CEEEEecCCceeccCCCee--ccceEEEEEeeeeCCC-eEEEEECCEECCCC--CceeEEEeccCccccEEEEECCCChh
Confidence 3577889999875543332 3667899999999999 99999999999753 33333221111123579999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|.+|..++++.|.|..
T Consensus 76 d~G~Y~C~a~N~~G~~~~~~~l~v~~ 101 (118)
T 1wwc_A 76 NNGNYTLIAKNPLGTANQTINGHFLK 101 (118)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred cCEEEEEEEECCCCeEeeEEEEEEcc
Confidence 99999999999999999999998754
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=121.45 Aligned_cols=101 Identities=22% Similarity=0.306 Sum_probs=83.2
Q ss_pred EEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
...+.+..+|.|. .+....+..|+.++|.|.+.|.|.| .|.|+|+|..+. ...++.+... ......|.|.++.
T Consensus 33 ~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~--~~~~~~~~~~---~~~~~~L~I~~v~ 106 (154)
T 1fhg_A 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVK--ESRHFQIDYD---EEGNCSLTISEVC 106 (154)
T ss_dssp -CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CSSSEEEEEC---TTCEEEEEESSCC
T ss_pred hhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECC--CCCcEEEEEC---CCCeEEEEECCCC
Confidence 3445566778887 4467789999999999999999999 999999999987 4456666532 2235799999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..|+|.|+|.|.|..|.....+.|.|..
T Consensus 107 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 134 (154)
T 1fhg_A 107 GDDDAKYTCKAVNSLGEATCTAELLVET 134 (154)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hhcCEEEEEEEEECCCeEEEEEEEEEeC
Confidence 9999999999999999999999998854
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=115.32 Aligned_cols=92 Identities=28% Similarity=0.392 Sum_probs=78.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|++++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 85 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLS--TSARHQVTT----TKYKSTFEISSVQASDEGNY 85 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCC-BCCBCSSSSCCT--TCSSEEEEE----CSSEEEEEECCCCSSCCSEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEECCEECC--CCCCEEEEE----CCCEEEEEECcCCchhCEEE
Confidence 356665 5567889999999999999999999 999999999887 455666654 23357999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|+
T Consensus 86 ~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 86 SVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp EECCBCSSCBCCEEEEEEEC
T ss_pred EEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999999885
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=112.14 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=82.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..|+.+... .+..+|+|.+++.+|+|
T Consensus 5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G 76 (114)
T 2cqv_A 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE------SEHMKVENS--ENGSKLTILAARQEHCG 76 (114)
T ss_dssp CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC------SSSEEEEEC--SSEEEEEETTCCTTTCE
T ss_pred CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcC------CCCEEEEEc--CCEEEEEECCCChhcCE
Confidence 45799999999999999999999999998 6779999999976632 346666543 34668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~ 136 (1011)
.|+|.+.|.. +..+..+.|.|...|.+|.
T Consensus 77 ~Y~C~a~N~~----g~~~~~~~l~V~~~p~~P~ 105 (114)
T 2cqv_A 77 CYTLLVENKL----GSRQAQVNLTVVDKPDPPA 105 (114)
T ss_dssp EEEEEEECSS----CEEECCEEEEEECSCSCCC
T ss_pred EEEEEEEECC----CcEEEEEEEEEECCCCCCC
Confidence 9999999863 3466789999998877654
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=114.54 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=76.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC----CCCeeEEeeCCeecCCcccCCCCcceEEeec----CCCceeEEEEeeccc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIGS----DEEGDYSLEIYPVML 99 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~----~~~~~~~L~I~~v~~ 99 (1011)
+.|..+|+++.+.+|++++|.|.+.+ +.+.|.|||+....... ....++.+... .....++|+|.+++.
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 84 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS---KAGKHLQLKETFERHSRVYTFEMQIIKAKD 84 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH---HTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCC---CCCceEEEccccccccccceEEEEEccCCc
Confidence 66999999999999999999999975 57799999975211000 01234444221 112357899999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCee
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRI 137 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i 137 (1011)
+|+|.|+|++.|.. +..+..+.|+|.+ ++..|.+
T Consensus 85 ~DaG~Y~Cevsn~~----g~~~~~~~L~V~~~~~~~p~~ 119 (126)
T 2dav_A 85 NFAGNYRCEVTYKD----KFDSCSFDLEVHESTGTTPNI 119 (126)
T ss_dssp TSCEEEEEEEECSS----CEEEECCEEEEECCCCSCCCC
T ss_pred ccCEEEEEEEEeCC----CcEEEEEEEEEEecCCCCCeE
Confidence 99999999999963 4578889999999 6666554
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=115.65 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=80.1
Q ss_pred EEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCC-C--cEEEeecCCCCCEEE
Q psy17146 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNS-P--NLTLLMTSDDLAGRY 606 (1011)
Q Consensus 538 ~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~-~--~L~I~~v~~~d~G~Y 606 (1011)
......+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+.. .+. + +|.|.++..+|+|.|
T Consensus 9 ~~~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCCCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred ccCCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence 33445689999999999999999999999999999999999999854332 111 2 899999999999999
Q ss_pred EEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 607 YCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 607 ~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
+|.|.| ..|..+..+.|.|..+|...
T Consensus 89 ~C~a~N-~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 89 TVSAVN-EAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEE-TTEEEEEEEEEEEECCSCCC
T ss_pred EEEEEc-CCCeEEEEEEEEEeCCCCCC
Confidence 999999 67788899999998887643
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-12 Score=110.37 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+.+..+.+|++++|.|.+ .|.| .++|+|||..+. ...++.+.. ++....|.|.++..+|+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~--~~~r~~i~~----~~~~~~L~I~~v~~~D~G~Y 76 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQ--ESDRLKVVQ----KGRIHKLVIANALTEDEGDY 76 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECC--CCSSEEEEE----CSSEEEEEESSCCGGGCSEE
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECC--CCCcEEEEE----eCCEEEEEECCCChhhCEEE
Confidence 356666 4567889999999999999 7888 899999999997 456777765 34467899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecCC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+|.|.|. ..+.++.|.|.++
T Consensus 77 ~C~a~N~--~~~~~a~L~V~~~ 96 (100)
T 2yuz_A 77 VFAPDAY--NVTLPAKVHVISG 96 (100)
T ss_dssp EEEESSS--CCCEEEEEEEECC
T ss_pred EEEEcCC--CeeEEEEEEEeCC
Confidence 9999998 5566677777543
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-12 Score=108.02 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=65.2
Q ss_pred ccceeecCCcee--EEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQT--AVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~--v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
|+.|..+++++. +.+|++++|.|.+.++.+.+.|+|||..+. ..+++.+..++ +.++|.|.+++.+|+|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~p~~~v~W~k~g~~i~------~~~~~~i~~~~--~~~~L~I~~v~~~D~G~ 75 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVE------ESDFVVLENEG--PHRRLVLPATQPSDGGE 75 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSCTTSCCEEEETTSCCC------CCSSCEEEEET--TEEEEEESSCCGGGCSE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECCCCcEEEEEECCEEee------eeeeeeEEecC--CeEEEEeCCCChhhcEE
Confidence 444444445544 458999999999988888999999997764 33577776543 56789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|+|.|.|. +..+.|+|
T Consensus 76 Y~C~a~n~--------~~~~~ltV 91 (91)
T 2lvc_A 76 FQCVAGDE--------CAYFTVTI 91 (91)
T ss_dssp EEEECSSC--------EEEEEEEC
T ss_pred EEEEEcce--------EEEEEEEC
Confidence 99999662 44566654
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=109.76 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=72.8
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+....+.+|+.++|.|.+.|.| | .+.|+|+|..+. ...++.+. .+.|.|.++..+|+|.|
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~~~--~~~~~~~~--------~~~L~i~~~~~~D~G~Y 75 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLV--ESNRTRIT--------GEEVEVRDSIPADSGLY 75 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-C-EEEEEBTTBCCC--CCSSEEEC--------SSEEEESSCCGGGSEEE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-C-ceEEEECCEecC--CCCCEEEe--------CCEEEECCCChHHCEEE
Confidence 456666 44677899999999999999998 7 999999999887 34455553 26899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|.|..|..+..+.|.|
T Consensus 76 ~C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 76 ACVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEeccCCCcEEEEEEEEE
Confidence 9999999999999988876
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-12 Score=112.00 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=83.1
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..+|+.+..+ ..+.++|.|.+++.+|
T Consensus 4 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~v~~~D 77 (110)
T 2dm2_A 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-----KSDHYTIQRD-LDGTCSLHTTASTLDD 77 (110)
T ss_dssp CCSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-----TCSSEEEEEC-TTCEEEEEESSCCTTT
T ss_pred CCCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-----CCCeEEEEEC-CCcEEEEEECCCChhh
Confidence 3456799999999999999999999999997 6779999999977643 1356666554 3456789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
+|.|+|.+.|.. +..+..+.|.|..++.+|
T Consensus 78 ~G~Y~C~a~N~~----g~~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 78 DGNYTIMAANPQ----GRISCTGRLMVQAVNSGP 107 (110)
T ss_dssp CSCCEEEEECTT----CCEEECCCEEEECCSCCS
T ss_pred CEEEEEEEEECC----CeEEEEEEEEEECCCCCC
Confidence 999999999864 335677889998877655
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-12 Score=110.29 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=76.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...+++|.|.++..+|+|.|+|.|.| ..
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 85 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS-SS 85 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEEC-SS
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEc-CC
Confidence 47888889999999999999999999999999999999986543 34567899999999999999999999 57
Q ss_pred CceeeEEEEEEcCCC
Q psy17146 616 PEVGAEATVYLKGRP 630 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P 630 (1011)
+..+..+.|.|.++|
T Consensus 86 g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 86 GETSWSAVLDVTESG 100 (100)
T ss_dssp CCCBCCEEEEEESCC
T ss_pred CCEEEEEEEEEecCC
Confidence 788889999998765
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=106.70 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+.+..+.+|++++|.|.+.+ |.+ .+.|+|||.++. .+.++.+.. ++....|.|.++..+|+|.|
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~-~v~W~k~g~~i~--~~~~~~i~~----~g~~~~L~I~~v~~~D~G~Y 75 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDV-HGQWKLKGQPLA--ASPDCEIIE----DGKKHILILHNCQLGMTGEV 75 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSC-CCEEEETTEECC--CBTTEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCC-eEEEEECCEECc--CCCCEEEEE----ECCEEEEEECCCChhhCEEE
Confidence 356666 456788999999999999986 456 799999999997 445677654 34457999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|. ..++.|.|.
T Consensus 76 ~C~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 76 SFQAANT----KSAANLKVK 91 (93)
T ss_dssp EEEETTE----EEEEEEEEE
T ss_pred EEEECCC----cEEEEEEEE
Confidence 9999885 456666664
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-12 Score=105.74 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=65.7
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.+..+.+|+.++|.|.+.+ |.| .|+|+|||++|. .+.++.+.. ++....|.|.++..+|+|.|+|.|.|
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~n--- 72 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGG-PVRWYKDGERLA--SQGRVQLEQ----AGARQVLRVQGARSGDAGEYLCDAPQ--- 72 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CST-TCEEEETTEECC--CCSSEEEEE----CSSCEEEEESSCSSTTCEEEEEECTT---
T ss_pred eEEEEecCCCEEEEEEECC-CCc-EEEEEECCEEcc--ccccEEEee----cCCeEEEEecCCCCcccEEEEEEECC---
Confidence 4567889999999999966 888 899999999998 456777665 34467899999999999999999855
Q ss_pred CeEEEEEEEecC
Q psy17146 716 SDSVEIMLKPQK 727 (1011)
Q Consensus 716 ~~~~~~~l~V~~ 727 (1011)
++.++.|.|++
T Consensus 73 -~~~~a~l~V~e 83 (84)
T 2lu7_A 73 -DSRIFLVSVEE 83 (84)
T ss_dssp -TCEEEEEEECC
T ss_pred -EEEEEEEEEEC
Confidence 56777787754
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=112.55 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=85.9
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...|+.+..+. +|.|.+++.+|+
T Consensus 5 ~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-----~~~~~~~~~~~-----~L~i~~v~~~D~ 74 (118)
T 2eo9_A 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-----QDSRIKQLENG-----VLQIRYAKLGDT 74 (118)
T ss_dssp CCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-----TSTTEEEEETT-----EEEEESCCGGGC
T ss_pred CCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-----CCCeEEEccCC-----EEEEccCCcCCC
Confidence 345789999999999999999999999987 6779999999977632 23566655432 799999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~ 149 (1011)
|.|+|.+.|.. +..+..+.|+|...+.+.....+..+.+.+|.
T Consensus 75 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 75 GRYTCIASTPS----GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117 (118)
T ss_dssp CCEEEEEECSS----CEEEEECCEEEECCSCCCCCCCCCCCCCCCCC
T ss_pred EEEEEEEEcCC----CcEEEEEEEEEEeCCCCccCCCCCCCccCCCC
Confidence 99999999863 34566788999887765444444455555553
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=108.69 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=76.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.++.|...|.++.+.+|++++|.|.+.++.+.+.|+|++..+..... .|+.+..++ ...+|.|.+++.+|+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~----~~~~~~~~~--~~~~L~I~~~~~~D~G~Y 79 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK----SRYRIRVEG--KKHILIIEGATKADAAEY 79 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTT----CSEEEEEET--TEEEEEEEEECTTTCSEE
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecCCCCeEEEEECCEECCCCCc----eEEEEEEcC--CEEEEEECCCCcccCEEE
Confidence 34558889999999999999999999987789999999987743321 166666443 456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCC
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDP 134 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~ 134 (1011)
+|.+.| .+..+.|+|..+|.+
T Consensus 80 ~C~a~n--------~~~~~~l~V~~~p~p 100 (103)
T 1x44_A 80 SVMTTG--------GQSSAKLSVDLKSGP 100 (103)
T ss_dssp EEEETT--------EEEEEEEEEECCCSC
T ss_pred EEEECC--------CcEEEEEEEeCCCCC
Confidence 999976 356788999887654
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=109.09 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=72.2
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCC---CCeEEEEECCeEecc-cCCCCeEEecCC--cCccceeEEEEcCCCCCC
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPP---PEKVTWSYRGEEIGV-GSSDDYSVLEDP--LKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~---p~~v~W~~~g~~l~~-~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~d 702 (1011)
|.|. .+....+.+|++++|.|.+.|.|. | .|.|+|++..... ....++.+.... ........|.|.+++.+|
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCC-EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCc-EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 5555 456778999999999999999998 8 9999998733221 123355443210 011235789999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|+|.|.|..|.+++.+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999884
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-11 Score=130.88 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=112.2
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--------------CCeEEEEecC-------------Cc----------e-e-----
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--------------APEITWIHED-------------SD----------K-V----- 586 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--------------~p~v~W~k~~-------------~~----------~-~----- 586 (1011)
.+..+.+.+|++++|.|.....+ ...+.|++.. .. . .
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 34568899999999999987543 3479998642 10 0 0
Q ss_pred ------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-Ccee-eecCC-cEEEEEEEEec-C
Q psy17146 587 ------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQF-GIPGD-TARVECSAFSI-P 656 (1011)
Q Consensus 587 ------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~-v~~G~-~v~L~C~~~g~-p 656 (1011)
...+.+|+|.+++.+|+|.|.|.+.| ..+.....+.|.|..+|.+... .... +..|+ .++|.|.+.|. |
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~-~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP 322 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL-PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYP 322 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBS
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEe-cccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcC
Confidence 01235799999999999999999998 4556667888999999998743 2222 45686 89999999997 5
Q ss_pred CC-CeEEEE-ECCe---EecccCC---CCeEEecCCcCccceeEEEEcCCCCCCC-EEEEEEEEcCC---CCeEEEEEE
Q psy17146 657 PP-EKVTWS-YRGE---EIGVGSS---DDYSVLEDPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPY---GSDSVEIML 723 (1011)
Q Consensus 657 ~p-~~v~W~-~~g~---~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~---G~~~~~~~l 723 (1011)
.. .+|+|+ +|+. .+..... .......+ ......+.|.|.....++. +.|+|.+.|.. |..+.+++|
T Consensus 323 ~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~D-GTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL 400 (401)
T 3f8u_B 323 SGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSD-GSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400 (401)
T ss_dssp STTCEEEEEEESSSSCSCEECCSEEEECCCEECTT-SCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred CCCcEEEEEecCCCCCceecccccccccccccCCC-ceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence 41 499995 8752 2211000 00000000 0011245777777644344 59999999987 555655554
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=114.28 Aligned_cols=93 Identities=23% Similarity=0.431 Sum_probs=76.0
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .|.|+|+|..+... .+..+... .....+|.|.++..+|+|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPD--SAHKMLVR---ENGVHSLIIEPVTSRDAGIY 81 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCC-EEECBBSSSBCCCC--SSEEEEEC---TTSCEEEEESSCCGGGCSBB
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCC-EEEEEECCEECCCC--CceEEEEe---cCCeEEEEEeeCCcccCEEE
Confidence 467776 4567789999999999999999999 99999999988742 22222221 22356999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 82 ~C~a~n~~g~~~~~~~l~V~ 101 (110)
T 2dm3_A 82 TCIATNRAGQNSFSLELVVA 101 (110)
T ss_dssp CEEEECSSCEEEECCEEEEE
T ss_pred EEEEECCCCEEEEEEEEEEe
Confidence 99999999999999999885
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=113.48 Aligned_cols=94 Identities=22% Similarity=0.392 Sum_probs=68.3
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
..|.+..+|.|...+.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence 45667789999999999999999999999999999999999999986543 23467899999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCe
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~ 631 (1011)
|.| ..|.....+.|.|..+|.
T Consensus 83 a~n-~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 83 ACS-VLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp EC-----CEEEEEEEEEEC---
T ss_pred EEe-CCCceEEEEEEEEeCCCc
Confidence 999 678888999999988775
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=113.03 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=117.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+..+.+.|++..|..|+++.|+|++..+.+. +.|...-. +..+. ...+-..|.|.+|+ |+|.|
T Consensus 2 ~f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~------------~~~~~--~g~~w~~l~l~~vs--~~g~~ 65 (192)
T 1zxq_A 2 VFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN------------KILLD--EQAQWKHYLVSNIS--HDTVL 65 (192)
T ss_dssp CCCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE------------EEEEE--EETTEEEEEEEEEC--SCEEE
T ss_pred CcEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC------------ceEEc--CCCCeEEEEEeccc--cCCee
Confidence 3568889999999999999999999877664 45543210 11111 12234469999999 78999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~ 183 (1011)
.|.+.... ......+.|+|+..|+.+.+...+ ..+.+|+.++|+|.+.++.|... +.|+|+++++... .+.
T Consensus 66 ~C~~~c~~----~~~~~~~~itVy~~P~~v~i~~~p-~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~-~f~- 138 (192)
T 1zxq_A 66 QCHFTCSG----KQESMNSNVSVYQPPRQVILTLQP-TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYE-TFG- 138 (192)
T ss_dssp EEEEEETT----EEEEEEEEEEECBCCCCCEEEEES-SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEE-ECC-
T ss_pred EEEEECCC----cceEEEEEEEEEeCCCCceEccCC-ccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeec-ccc-
Confidence 99998742 345688999999999988887432 24578999999999888999765 7999988887442 221
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+......... .++.+...+.+|.-.|+|+|.-..
T Consensus 139 ~~~~~~~~~t--v~~~~~~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 139 KAAPAPQEAT--ATFNSTADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp SSTTCTTCEE--EEEEEECCGGGGGCEEEEEEEEEC
T ss_pred cccCcCcceE--EEEEEecchhhCCceEEEEEEecC
Confidence 1111222222 355565555555559999999765
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=110.36 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=75.5
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
...++.|...++++.+.+|++++|.|.+.+.. +.+.|+|++..+.. .+|+.+..++ ..++|+|.+++.+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~------~~r~~~~~~~--~~~~L~I~~v~~~D 76 (104)
T 2eny_A 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS------SSRFQATRQG--RKYILVVREAAPSD 76 (104)
T ss_dssp CCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSB------CSSCEEEEET--TEEEEEECSCCTTT
T ss_pred ccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCC------CCCEEEEEcC--CEEEEEECCCCHHH
Confidence 34567899999999999999999999998743 36999999977642 3577766443 46789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
+|.|+|.+.+ .+..+.|+|..+|.
T Consensus 77 ~G~Y~C~a~~--------~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 77 AGEVVFSVRG--------LTSKASLIVRERSG 100 (104)
T ss_dssp CSCEEEEETT--------EEEEECEEEECCCS
T ss_pred CEEEEEEECC--------eeEEEEEEEeCCCc
Confidence 9999999854 35678999998764
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=109.76 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=75.0
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
..+|.|...|.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+... .+ ..|.|.++..+|+|.|+|.|.
T Consensus 3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (100)
T 2kdg_A 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82 (100)
T ss_dssp CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 35788988999999999999999999999999999999998543222 22 389999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCC
Q psy17146 612 VMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P 630 (1011)
| ..|..+..+.|.|..++
T Consensus 83 n-~~g~~~~~~~l~V~~~e 100 (100)
T 2kdg_A 83 N-RAGEATFTVQLDVLAKE 100 (100)
T ss_dssp E-TTEEEEEEEEEEEECCC
T ss_pred c-CCCeEEEEEEEEEEecC
Confidence 9 67788889999887643
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=107.62 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Ccee-------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
+|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++ ..+. ......|.|.++..+|+|.|+|.|.| .
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~ 80 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN-E 80 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE-T
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc-C
Confidence 688888888999999999999999999999999999999 4431 12336799999999999999999999 6
Q ss_pred CCceeeEEEEEEc
Q psy17146 615 FPEVGAEATVYLK 627 (1011)
Q Consensus 615 ~~~~s~~~~l~V~ 627 (1011)
.|..+..+.|.|+
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T 1wit_A 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCeEEEEEEEEEC
Confidence 7788888888773
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=109.20 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=79.6
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
....+|.|...+.++.+.+|++++|.|.+.++.+.+.|+|++..+.. ..|+.+..++ ...+|.|.+++.+|+
T Consensus 4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~~~~------~~~~~~~~~~--~~~~L~I~~v~~~D~ 75 (103)
T 2edf_A 4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRK------SQKYDVVCEG--TMAMLVIRGASLKDA 75 (103)
T ss_dssp SCCCCCCEEECCCCEEECTTSCEEECCEESSSSCCCCEEESSCBCCC------SSSEEEEEET--TEEEEEESSCCTTTC
T ss_pred CCCCCcEEEecCCccEEcCCCCEEEEEEEeCCCCcEEEEECCEEccC------CCCEEEEECC--CEEEEEECCCCcccC
Confidence 44568899999999999999999999999988789999999976632 3466666443 366899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.|+|.+.| .+..+.|+|..+|.++
T Consensus 76 G~Y~C~a~n--------~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 76 GEYTCEVEA--------SKSTASLHVEEKASGP 100 (103)
T ss_dssp SEEEEECSS--------CEEEEEEEECCCSSSS
T ss_pred EEEEEEEcc--------CCcEEEEEEeCCCCCC
Confidence 999999987 2566889998877654
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=114.99 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=83.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...+.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...+++|.|.++..+|+|.|+|.|.| ..
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n-~~ 85 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAST-PS 85 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEEC-SS
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEc-CC
Confidence 47889889999999999999999999999999999999986543 24457899999999999999999999 57
Q ss_pred CceeeEEEEEEcCCCeee---cCCceeeecCC
Q psy17146 616 PEVGAEATVYLKGRPTII---SHRTQFGIPGD 644 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~---~~~~~~v~~G~ 644 (1011)
+..+..+.|.|.++|.+. .+.+..+.+|.
T Consensus 86 g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 86 GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117 (118)
T ss_dssp CEEEEECCEEEECCSCCCCCCCCCCCCCCCCC
T ss_pred CcEEEEEEEEEEeCCCCccCCCCCCCccCCCC
Confidence 778888899998876543 23444455553
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=109.80 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=73.6
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC----CCCeeEEeeCCe-ecCCcccCCCCcceEEeec----CCCceeEEEEee
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDF-ALGPHRNLSGFDRYAMIGS----DEEGDYSLEIYP 96 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~-~l~~~~~~~~~~r~~i~~~----~~~~~~~L~I~~ 96 (1011)
..+.|..+|+++.|.+|++++|.|.+.+ +.|.|.|||+.. .+... ...++.+... .....++|+|.+
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~ 86 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK----SGARFSFKESHNSASNVYTVELHIGK 86 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCS----TTSSCEEEEEECSSSCEEEEEEEESS
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCC----CccEEEeccccccccccceEEEEEee
Confidence 3466889999999999999999999986 477999999752 22110 1234444321 112357899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~ 131 (1011)
|+.+|+|.|+|++.|.. +..+..+.|+|..+
T Consensus 87 v~~~D~G~Y~Cevsn~~----g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 87 VVLGDRGYYRLEVKAKD----TCDSCGFNIDVEAP 117 (118)
T ss_dssp CCTTTCSCEEEEEECSS----CEEEEEECCEEECC
T ss_pred CChhhCEEEEEEEEEcC----CcEEEEEEEEEEcC
Confidence 99999999999999964 45788899999874
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=111.32 Aligned_cols=83 Identities=16% Similarity=0.327 Sum_probs=71.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC---CCCeEEEEecC---------Cceeec---------CCCcEEEeecCCCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN---PAPEITWIHED---------SDKVVG---------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~---p~p~v~W~k~~---------~~~~~~---------~~~~L~I~~v~~~d~ 603 (1011)
|.|...|.++.+.+|++++|.|.+.+. |.|.|+|+|++ .++... ...+|+|.++..+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 668899999999999999999999875 89999999973 233221 137899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
|.|+|+|.| ..+..+..++|.|..
T Consensus 88 G~Y~Cevsn-~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTY-KDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEEC-SSCEEEECCEEEEEC
T ss_pred EEEEEEEEe-CCCcEEEEEEEEEEe
Confidence 999999999 578888999999988
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=106.26 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=66.7
Q ss_pred CCCeeecCC-ce--eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTIISHR-TQ--FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~~~~-~~--~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.||.|..+. +. .+.+|+.++|.|.+.+ |.| .++|+|||++|. .+.++.+.. ++...+|.|.++..+|+|
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~i~--~~~~~~i~~----~~~~~~L~I~~v~~~D~G 74 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDA-PVRWYKDGQEVE--ESDFVVLEN----EGPHRRLVLPATQPSDGG 74 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTS-CCEEEETTSCCC--CCSSCEEEE----ETTEEEEEESSCCGGGCS
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCc-EEEEEECCEEee--eeeeeeEEe----cCCeEEEEeCCCChhhcE
Confidence 467777553 33 3468999999999865 778 899999999998 456677665 345678999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|. +.++.|+|
T Consensus 75 ~Y~C~a~n~----~~~~~ltV 91 (91)
T 2lvc_A 75 EFQCVAGDE----CAYFTVTI 91 (91)
T ss_dssp EEEEECSSC----EEEEEEEC
T ss_pred EEEEEEcce----EEEEEEEC
Confidence 999998664 55666654
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=111.44 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=75.8
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
+..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ...+|.|.++..+|+|.|+|.|.
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 84 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT 84 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence 446789999999999999999999999999999999999998544221 22479999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCC
Q psy17146 612 VMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P 630 (1011)
| ..|..+..+.|.|...+
T Consensus 85 N-~~G~~~~~~~l~V~~~~ 102 (103)
T 3qp3_A 85 N-YKGEASDYATLDVTGGD 102 (103)
T ss_dssp E-TTEEEEEEEEEEEECC-
T ss_pred e-CCCcEEEEEEEEEECCC
Confidence 9 67888889999887653
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=140.09 Aligned_cols=212 Identities=9% Similarity=0.075 Sum_probs=129.7
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+..+..+...|++..+.+|++++|.|.+. .+.+.|+++|..+. ....+.|+|.++...|+|.|.|.+.+ .
T Consensus 199 ~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~ri~~~~~~L~I~nl~~sd~g~y~~~C~~--~ 273 (488)
T 2q7n_A 199 SWIRNTETNVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFIT--D 273 (488)
T ss_dssp CCCCCSSCCEECTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCEECSSSCEEEECCSCCCCCSSCEEEEEEE--S
T ss_pred CCcCCCceEECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchhhccceEEEEEEeCCCcccCCcEEEEEEc--C
Confidence 334556677788888899999999999998 46999999985432 23346899999999999999887774 2
Q ss_pred CceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeE-ecccCCCCeEEecC-----------
Q psy17146 616 PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE-IGVGSSDDYSVLED----------- 683 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-l~~~~~~~~~~~~~----------- 683 (1011)
.....+.|.|..+|... . .|.|........ .++|...... +.......|.+...
T Consensus 274 -~~i~~~~l~v~~pP~~P--~----------nl~C~~~~~~sv-tcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~ 339 (488)
T 2q7n_A 274 -DDVYGTVVFAGYPPDVP--Q----------KLSCETHDLKEI-ICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRI 339 (488)
T ss_dssp -SCEEEEEEEEECCCCCC--C----------SCEEEBSSSSEE-EEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECS
T ss_pred -CeEEEEEEEeeCCCCCC--c----------ccEEEEcCCCEE-EEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccc
Confidence 22347788887777532 1 233333222111 3334331110 00000011111100
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCC
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPP 763 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (1011)
....+....+.+........+.++|.|.|..|.....+.+.+.+ ..++.|
T Consensus 340 ~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~------------------------------~v~P~P 389 (488)
T 2q7n_A 340 EGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTE------------------------------RVAPHD 389 (488)
T ss_dssp SCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEEEEECCGGG------------------------------TBCCCC
T ss_pred cccCCceEEEEEcCCCCccEEEEEEEEEeCCCCccceEEEEecC------------------------------CCCCCC
Confidence 00001223455544433467789999999999854322222111 124448
Q ss_pred CCCCcccccccccccccc-cCCCCCCCCcCcceeeecC
Q psy17146 764 PGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTG 800 (1011)
Q Consensus 764 p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~ 800 (1011)
|.++.+..++..++.++| ++...+..+..|.|+|+..
T Consensus 390 P~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~ 427 (488)
T 2q7n_A 390 PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKA 427 (488)
T ss_dssp CEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCT
T ss_pred CeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEEC
Confidence 999999888899999999 4444456889999999864
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=107.52 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=73.3
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+.. ....+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 478888899999999999999999999999999999999854321 2234799999999999999999999
Q ss_pred cCCCceeeEEEEEEcC
Q psy17146 613 MGFPEVGAEATVYLKG 628 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~ 628 (1011)
..|.....+.|.|..
T Consensus 84 -~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 -IAGETSSHAFLLVQA 98 (99)
T ss_dssp -TTEEEEEEEEEEEEC
T ss_pred -CCCcEEEEEEEEEec
Confidence 678888888888864
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-11 Score=105.41 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=75.2
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCccc----CCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.++.|...++++.+.+|++++|.|.+.+ .+.+.|+|||.+|..... .....|+.+..+ ...++|+|.+++.+|
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~-~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~--g~~~~L~I~~v~~~D 83 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK--GLQHRLILHAVKHQD 83 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS-CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB--TTEEEEEEESCCSTT
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC-CCeEEEEECCEECccCcccccccccccEEEEEeC--CcEEEEEECCCCHHH
Confidence 3578999999999999999999999998 889999999988754320 001117777543 346789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
+|.|+|..-+. ....+.|+|..+|.
T Consensus 84 ~G~Y~~~~~~~-------~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 84 SGALVGFSCPG-------VQDSAALTIQESSG 108 (112)
T ss_dssp CSEEEEEEETT-------EEEEEEEEEECSSC
T ss_pred CccEEEEEECC-------eeEEEEEEEeCCCc
Confidence 99997744332 24578999998764
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.49 Aligned_cols=91 Identities=25% Similarity=0.373 Sum_probs=72.3
Q ss_pred CCCeeecC-----CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 628 GRPTIISH-----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 628 ~~P~i~~~-----~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.+|.+... ....+.+|+.++|.|.+.|.|.| .+.|+|+|..+..... ..+.... ..+.|.|.++..+
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~ 75 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPS 75 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEG------GGTEEEECSCCGG
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEccccCCC-EEEEEECCEEcccccccccEEEec------CeEEEEEccCCcC
Confidence 35666522 34568899999999999999999 8999999999875322 1223322 2368999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|+|.|.|..|..+..+.|.|
T Consensus 76 D~G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 76 DKGNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCEEEEEEEEEE
Confidence 999999999999999999988876
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-11 Score=126.89 Aligned_cols=171 Identities=18% Similarity=0.346 Sum_probs=109.3
Q ss_pred ceEEEcCCCcEEEEEEEec--CCCCeEEEEecCCc---e----------------------ee-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSD---K----------------------VV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g--~p~p~v~W~k~~~~---~----------------------~~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+ .....+.|+|.... . .. ....+|+|.+++
T Consensus 31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (267)
T 3u1s_H 31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT 110 (267)
T ss_dssp CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence 3567999999999999975 34568999985311 0 00 012349999999
Q ss_pred CCCCEEEEEEEEe-------cC--------------CC---ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEE
Q psy17146 600 DDLAGRYYCKASV-------MG--------------FP---EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVEC 650 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n-------~~--------------~~---~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C 650 (1011)
.+|+|.|.|.+.+ .+ .. .....+.|.|. .+|.+. ..+...+..|+.++|.|
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C 190 (267)
T 3u1s_H 111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 190 (267)
T ss_dssp GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEE
T ss_pred hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEE
Confidence 9999999999972 01 00 11223456664 356665 23333456899999999
Q ss_pred EEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 651 SAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 651 ~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+.+. |.+..++| +|..+....................+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 191 ~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 191 LVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 99985 54558999 6655432100000001100001124679999988888 9999999999887766666654
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=132.56 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=133.5
Q ss_pred EEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC----
Q psy17146 555 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---- 630 (1011)
Q Consensus 555 ~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P---- 630 (1011)
.+..|++++|.|.+...+ .|.|++++.......+++|+|.++...|+|.|+|.| + +.....+.|.|..++
T Consensus 17 ~~~~G~~v~l~C~~~~~~--~i~W~~~~~~~~~~~~~~L~i~~~~~~d~G~YtC~~-~---~~~~~~~~l~v~~~~~~~~ 90 (306)
T 3d85_D 17 PDAPGEMVVLTCDTPEED--GITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHK-G---GEVLSHSLLLLHKKEDGIW 90 (306)
T ss_dssp SSCCCEEEEEECSSSCCS--SCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEEE-T---TEEEEEEEEEEEEEETTEE
T ss_pred cCccCCcEEEECCCCCCC--cCEEEECCccccCCCCCEEEEEecCcCCCceEEEee-C---CcccceEEEEEEeccCCcc
Confidence 355899999999987333 899999998665567789999999999999999999 3 455556666665421
Q ss_pred --eeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeE-ecccCCCCeEEecCCcC---------ccceeEEEEcCC
Q psy17146 631 --TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE-IGVGSSDDYSVLEDPLK---------EGIKSTLIIRES 698 (1011)
Q Consensus 631 --~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-l~~~~~~~~~~~~~~~~---------~~~~~~L~I~~~ 698 (1011)
.|..... -.. +...|.|.+...+.....+|..++.. +.. .|........ ......++|.+.
T Consensus 91 ~t~i~~~~~--~pp-~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~----~~~~~r~~~~~~~~~C~~~~~~~~~c~v~~~ 163 (306)
T 3d85_D 91 STDILKDQK--EPK-NKTFLRCEAKNYSGRFTCWWLTTISTDLTF----SVKSSRGSSDPQGVTCGAATLSAERVRGDNK 163 (306)
T ss_dssp CCCSSCCCC------CCCCCEEEBSSSSSEEEEEEEESCCSSEEE----EEEEEECSSSCEEEEECCCEEEEEEEC--CE
T ss_pred eeeeecccC--CCC-CCCcceEEcCCcccCcEEEecCCCCCceeE----EEEEEecCCCCcceECCCCCCCccceeecCc
Confidence 2221100 001 23468898877763337888876541 110 1111100000 000011112111
Q ss_pred -----------------CCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 699 -----------------RHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 699 -----------------~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
.......++|.|.|.+|..+....+.+.+ .-+|
T Consensus 164 ~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~------------------------------iVkP 213 (306)
T 3d85_D 164 EYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRD------------------------------IIKP 213 (306)
T ss_dssp EEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHH------------------------------HBCC
T ss_pred cccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehh------------------------------cEec
Confidence 11235667999999999777766554421 1255
Q ss_pred CCCCCCccccccc-ccccccc-cCCCCCCCC----cCcceeeecCcc----------------cccccccc---c---CC
Q psy17146 762 PPPGNGIEHHVTA-DGEKNQC-KESDNSSNI----SDIKLEFRTGSS----------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 762 ~~p~~~~~~~~~~-~s~~~~W-~~~d~~s~I----~~Y~ve~~~~~~----------------~p~~~Y~f---A---~G 813 (1011)
.||.++.++.+.. ..+.++| ++.+.+.|. ..|.|+||.... .++++|+| | .|
T Consensus 214 dPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~~~ts~~l~~~~~Y~vqVRa~~~~~ 293 (306)
T 3d85_D 214 DPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYY 293 (306)
T ss_dssp CCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSEEEECCCSSCEEEEEEEESSS
T ss_pred CCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEeeccccEEEEeCCCeEEEEEEeccCCC
Confidence 5999998887544 6889999 666666665 589999987553 35677777 3 46
Q ss_pred CCCCC
Q psy17146 814 DSETG 818 (1011)
Q Consensus 814 ~g~~s 818 (1011)
.|..|
T Consensus 294 ~G~WS 298 (306)
T 3d85_D 294 SSSWS 298 (306)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 56555
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-11 Score=115.67 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=111.5
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
.+...|.+..+.+|+++.|+|.+....+..+.|...-....... ...+.|.+++ +|.+.|.|.+.. +.....+.+
T Consensus 4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c-~~~~~~~~v 81 (196)
T 3bn3_B 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRC-ARRTLQARG 81 (196)
T ss_dssp CEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEE-TTEEEEEEC
T ss_pred EEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEEC-CCCceEEEE
Confidence 34556778889999999999999643333677764322222221 1248999998 888889999877 456788899
Q ss_pred EEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 623 TVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 623 ~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+|.|..+|... .+....+.+|+.++|+|.+.|..++ +.|+|+|+++.+...... ...........++++.-.
T Consensus 82 ~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~----~~~~~~~~~t~~~~~~~~ 157 (196)
T 3bn3_B 82 LIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA----GEPPRARGAVLTATVLAR 157 (196)
T ss_dssp EEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT----TSCTTCCCEEEEEEEECC
T ss_pred EEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc----cccccccceeEEEEEeee
Confidence 99998877644 2233348999999999999986443 248999999998642210 000001123356666655
Q ss_pred CCCCCEEEEEEEEcCCC
Q psy17146 699 RHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G 715 (1011)
..+|...|+|.|.|.++
T Consensus 158 r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 158 REDHGANFSCRAELDLR 174 (196)
T ss_dssp GGGTTCEEEEEEEEECG
T ss_pred eccCCCeEEEEEEccCC
Confidence 54444499999999988
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=109.33 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=71.5
Q ss_pred cCCceeeecCCcEEEEEEEEec---CCCCeEEEEECCe-EecccCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI---PPPEKVTWSYRGE-EIGVGSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~---p~p~~v~W~~~g~-~l~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
.+.+..+.+|++++|.|.+.|. |.| .|+|||++. .+......++.+... ........+|+|.++..+|+|.|+
T Consensus 18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 96 (118)
T 2edn_A 18 KPDSVSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR 96 (118)
T ss_dssp CCCCCEEETTSCEECCEEEETTTSSSCC-CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred CCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence 5677889999999999999986 678 999999752 222222345555321 111223589999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEecC
Q psy17146 708 CSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|..|.+++.+.|.|+.
T Consensus 97 Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 97 LEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp EEEECSSCEEEEEECCEEEC
T ss_pred EEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999999864
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=105.48 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=72.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
++.|...|....+.+|+.++|.|.+.|.|.|.+.|+|++..+.....+.|.|.++..+|+|.|+|.|.|..+...+..+.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 82 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence 46777888889999999999999999999999999999877766677899999999999999999999943333456677
Q ss_pred EEEcC
Q psy17146 624 VYLKG 628 (1011)
Q Consensus 624 l~V~~ 628 (1011)
|.|.+
T Consensus 83 l~V~~ 87 (91)
T 3bfo_A 83 IIIDE 87 (91)
T ss_dssp EEEC-
T ss_pred EEEeh
Confidence 87754
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=118.43 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=80.3
Q ss_pred cccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CCCcEEEeecCCCCC
Q psy17146 534 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 534 ~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~~~d~ 603 (1011)
...+.+.+..+|.|...+.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+... ....|.|.++..+|+
T Consensus 31 ~~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 110 (154)
T ss_dssp ---CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGC
T ss_pred eehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcC
Confidence 3445566678999999999999999999999999999999999999998543211 124899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~ 634 (1011)
|.|+|.|.| ..|..+..+.|.|..+|.+..
T Consensus 111 G~Y~C~a~N-~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 111 AKYTCKAVN-SLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEECC-----
T ss_pred EEEEEEEEE-CCCeEEEEEEEEEeCcCcCCC
Confidence 999999999 678889999999999988763
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=105.99 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=72.6
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-------CC---CcEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-------NS---PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-------~~---~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+... .. .+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 5788888999999999999999999999999999999998543221 11 2699999999999999999999
Q ss_pred cCCCceeeEEEEEEcC
Q psy17146 613 MGFPEVGAEATVYLKG 628 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~ 628 (1011)
..+..+..+.|.|.+
T Consensus 84 -~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 -EYGARQCEARLEVRG 98 (99)
T ss_dssp -TTEEEEEEEEEEEEC
T ss_pred -CCCceeEEEEEEEEC
Confidence 677888888888864
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=109.04 Aligned_cols=101 Identities=27% Similarity=0.330 Sum_probs=79.8
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .+..+... ..+..+|+|.+++.+|+
T Consensus 6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~------~~~~~~~~-~~~~~~L~i~~v~~~D~ 78 (110)
T 2dm3_A 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD------SAHKMLVR-ENGVHSLIIEPVTSRDA 78 (110)
T ss_dssp CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC------SSEEEEEC-TTSCEEEEESSCCGGGC
T ss_pred CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC------CceEEEEe-cCCeEEEEEeeCCcccC
Confidence 445799999999999999999999999987 66799999998766422 22222222 23467899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.|+|.+.|.. +..+..+.|.|..++.+|
T Consensus 79 G~Y~C~a~n~~----g~~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 79 GIYTCIATNRA----GQNSFSLELVVAAKESGP 107 (110)
T ss_dssp SBBCEEEECSS----CEEEECCEEEEECCCCSS
T ss_pred EEEEEEEECCC----CEEEEEEEEEEeCCCCCC
Confidence 99999999863 346778899999887765
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=108.97 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=74.7
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
.+..+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+. ......|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N- 85 (99)
T 2yr3_A 7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN- 85 (99)
T ss_dssp CCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC-
T ss_pred CcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE-
Confidence 45678999999999999999999999999999999999999986543 23346899999999999999999999
Q ss_pred CCCceeeEEEEEEc
Q psy17146 614 GFPEVGAEATVYLK 627 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~ 627 (1011)
..|..+..+.|.|+
T Consensus 86 ~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 86 ALGQVSCSAWVTVH 99 (99)
T ss_dssp SSCEEEEECCEEEC
T ss_pred CCCeEEEEEEEEEC
Confidence 57777777777763
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=119.92 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=100.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c--ee----------------e-----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D--KV----------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~--~~----------------~-----~~~~~L~I~~v~ 599 (1011)
+...|..+.+.+|++++|.|.+.+.+ ...+.|+|... . .. . ....+|+|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 44567788999999999999998665 46899998631 1 11 0 112479999999
Q ss_pred CCCCEEEEEEEEecCC-----C--ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 600 DDLAGRYYCKASVMGF-----P--EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~-----~--~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
.+|+|.|.|.+.+... . .......|.|........++...+.. ..++|.|.+.|. |.++.|+|+++ ..+.
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~ 161 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKIT 161 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEe
Confidence 9999999999997311 1 12233567776422222122222222 234899999986 55558999999 7765
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCC
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G 715 (1011)
.. ........ ++ .+.+.... ..|.|.|+|.|.|..+
T Consensus 162 ~~-~~~~~~~~----dg---~y~~~~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 162 EF-DPAIVISP----SG---KYNAVKLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp EC-CCEEEECT----TS---SEEEEEEEEETTTTTCEEEEEETTE
T ss_pred cC-ccceEECC----CC---cEEEEECcccCCCCcEEEEEEeCCC
Confidence 32 11111111 22 33333333 3678899999999874
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=109.53 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=74.4
Q ss_pred EEecceeec---CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------e--cCCCcEEEeecCCCCCEEEEEE
Q psy17146 541 VTYGPRFRA---RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------V--GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 541 V~~~P~~~~---~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~--~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
+..+|.|.. .+..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+. . .....|.|.++..+|+|.|+|.
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 97 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELS 97 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence 345788864 3578899999999999999999999999999985542 1 1134599999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCC
Q psy17146 610 ASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.| ..|..+..+.|.|.++|
T Consensus 98 a~N-~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 98 VQI-ENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEC-SSCEECCEEEEEEECCC
T ss_pred EEe-CCCeEEEEEEEEEEcCC
Confidence 999 67788999999998876
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=107.03 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=75.3
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+.+..+.+.|+|++..+....... .|+.+..+ ....+|.|.+++.+|+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~i~~~~~~~--~~~~~~~~--~~~~~L~I~~~~~~D~G 80 (101)
T 2edk_A 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFK--ARYRFKKD--GKRHILIFSDVVQEDRG 80 (101)
T ss_dssp CCCCCCEEECCCCEEEESSCCCBCCEEESCSSCCCEEEESSCBCCCSCCSS--CCCEEEEC--SSEEEEECSSCCGGGCS
T ss_pred ccCCCEEEecCCceEEcCCCCEEEEEEEeCCCCEEEEEECCEECCCCCCcc--eeEEEEEC--CCEEEEEECCCChhhCE
Confidence 345788999999999999999999999998558999999998764332111 16666543 35668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.|. +..+.|+|..+|
T Consensus 81 ~Y~C~a~n~--------~~~~~l~V~~~P 101 (101)
T 2edk_A 81 RYQVITNGG--------QCEAELIVEEKQ 101 (101)
T ss_dssp BEEEECSSC--------EECCBEEEECCC
T ss_pred EEEEEEcCC--------cEEEEEEEeCCC
Confidence 999999762 344678887654
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=106.50 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=69.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCC---CeEEEEecCCc---------eeec---------CCCcEEEeecCCCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSD---------KVVG---------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~---p~v~W~k~~~~---------~~~~---------~~~~L~I~~v~~~d 602 (1011)
.|.|...|.++.+.+|++++|.|.+.|.|. |.|.|+|++.. .... ...+|+|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 478888999999999999999999999998 99999997621 1110 13689999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+|.|+|.|.| ..|..+..+.|.|.
T Consensus 84 ~G~Y~C~a~N-~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVST-KDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEEC-SSCEEEEEEEEEEE
T ss_pred CEEEEEEEec-CCCceEEEEEEEEe
Confidence 9999999999 67888899998885
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=101.92 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=75.8
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..|+.+..+ .+.++|.|.+++.+|+|
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~------~~~~~~~~~--~~~~~L~i~~~~~~d~G 75 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ------GGKYKLSED--KGGFFLEIHKTDTSDSG 75 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCS------SSSEEEEEE--TTEEEEEECSCCGGGCE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcC------CCCEEEEEe--CCEEEEEECCCCcccCE
Confidence 35789999999999999999999999987 6779999999977632 356666543 35568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.|+|.+.|.. +..+..+.|.|.
T Consensus 76 ~Y~C~a~n~~----g~~~~~~~l~V~ 97 (99)
T 3puc_A 76 LYTCTVKNSA----GSVSSSCKLTIK 97 (99)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEE
T ss_pred EEEEEEEeCC----CcEeEEEEEEEE
Confidence 9999999863 445666777775
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=103.36 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=76.5
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+..+.+.+.|+|++..+.. ..|+.+..+ ...++|+|.+++.+|+|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~W~k~~~~l~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G 76 (103)
T 2dku_A 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRA------SGKHQPSQE--GLTLRLTISALEKADSD 76 (103)
T ss_dssp SCCCCCCSSCCCCEEEETTSEEEEEEECSSCCSCCEEEESSCBCCS------SSSEEEEEE--TTEEEEEEESCCTTTCS
T ss_pred CCCCCEeEecCCcEEEeCCCcEEEEEEeCCCCCeEEEEeCCEECCC------CCeEEEEeC--CCEEEEEECCCCcccCE
Confidence 3457899999999999999999999997667789999999976642 347776533 35668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
.|+|.+. ..+..+.|+|...|.+|
T Consensus 77 ~Y~C~~g--------~~~~~~~l~V~~~p~~p 100 (103)
T 2dku_A 77 TYTCDIG--------QAQSRAQLLVQGRRSGP 100 (103)
T ss_dssp EEEEECS--------SCBCCEEEEEECSCCCC
T ss_pred EEEEEeC--------CceEEEEEEEeCccCCC
Confidence 9999822 23456889999887654
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=105.87 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CC----CcEEEeecCCCCCEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NS----PNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~----~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.+..... ...|..+.|.|.+.|.|.|.++|+|+|..+... .. +.|.|.++..+|+|.|+
T Consensus 2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (103)
T 1wwb_X 2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78 (103)
T ss_dssp CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence 45666543222 346888999999999999999999998544221 11 33999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCee
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
|.|.| ..|..+..+.|.|..+|.+
T Consensus 79 C~A~N-~~G~~~~~~~l~V~~~P~~ 102 (103)
T 1wwb_X 79 LIAKN-EYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEC-SSCEEEEEEEECCSCCCCC
T ss_pred EEEEe-CCCcEeEEEEEEECCCCCC
Confidence 99999 7899999999999988864
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=102.23 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=73.9
Q ss_pred eeccceeecCCc-eeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQD-QTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~-~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...+.+ +.+.+|++++|.|.+..+.+.+.|+|++..+.. ..|+.+..++ ...+|.|.+++.+|+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~W~k~g~~i~~------~~~~~~~~~~--~~~~L~I~~~~~~D~G 76 (100)
T 2yuv_A 5 SSGAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRP------STKYIFEHKG--CQRILFINNCQMTDDS 76 (100)
T ss_dssp SSSCCEEECCCSCEEECTTEEEEEEEEESCTTSCEEEEESSCBCCC------BTTEEEEEET--TEEEEEEEEECTTTCC
T ss_pred CCCCeEEecCCCccEEcCCCcEEEEEEecCCCceEEEEECCEECCC------CCCEEEEecC--CEEEEEEcCCCcCcCE
Confidence 357899998887 688899999999999977789999999976643 3467765433 4568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.+ .+..+.|+|..+|
T Consensus 77 ~Y~C~ag~--------~~~~~~l~V~~~P 97 (100)
T 2yuv_A 77 EYYVTAGD--------EKCSTELFVRSGP 97 (100)
T ss_dssp EEEEEETT--------EEEEEEEEECCSC
T ss_pred EEEEEECC--------ceEEEEEEEecCC
Confidence 99999921 4566888888765
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=105.13 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=68.3
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|+.++|.|.+.|.| | .+.|+|+|..+.. ..++.+. ...|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~~~~--~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g 78 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLAE--SNRTRIT--------GEEVEVQDSVPADSGLYACVTSSPSG 78 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-C-EEEEEESSSBCCC--CSSEEEC--------SSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred cCeEEeCCCcEEEEEEecCCC-C-eEEEEECCEECCC--CCcEEEE--------CCEEEEccCCHHHCEEEEEEEEeCCc
Confidence 445688999999999999987 7 9999999988863 3455553 25899999999999999999999999
Q ss_pred CeEEEEEEEecC
Q psy17146 716 SDSVEIMLKPQK 727 (1011)
Q Consensus 716 ~~~~~~~l~V~~ 727 (1011)
..+..+.|.|.+
T Consensus 79 ~~~~~~~l~V~~ 90 (99)
T 2cr3_A 79 SDTTYFSVNVSD 90 (99)
T ss_dssp EEEEEEEECBCS
T ss_pred eEEEEEEEEEec
Confidence 999999998854
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=104.41 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=74.9
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+.+. +.+.|+|++..+. ...|+.+..++ ..++|.|.+++.+|+|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~-p~v~W~k~~~~~~------~~~~~~~~~~~--~~~~L~I~~v~~~D~G 75 (108)
T 2dm7_A 5 SSGPARFTQDLKTKEASEGATATLQCELSKV-APVEWKKGPETLR------DGGRYSLKQDG--TRCELQIHDLSVADAG 75 (108)
T ss_dssp SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS-CCCEEESSSSBCC------SSSSCEEEEET--TEEEEEESSCCTTTCS
T ss_pred cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC-CeeEEEECCEECC------CCCCEEEEecC--CEEEEEECCCCcccCE
Confidence 4467999999999999999999999999865 7899999987653 33577766543 4568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.+ .+..+.|+|..+|
T Consensus 76 ~Y~C~a~n--------~~~~~~l~V~~~p 96 (108)
T 2dm7_A 76 EYSCMCGQ--------ERTSATLTVRALP 96 (108)
T ss_dssp EEEEEETT--------EEEEEECEEECCC
T ss_pred EEEEEEcC--------CEEEEEEEEecCC
Confidence 99999944 3566888888755
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=102.13 Aligned_cols=82 Identities=16% Similarity=0.402 Sum_probs=69.3
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+....+.+|+.++|.|.+.+ .| .+.|+|+|..+. ...++.+.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p-~v~W~k~g~~~~--~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~n~ 73 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AA-VISWTKDGVHLG--PNNRTVLIG--------EYLQIKGATPRDSGLYACTAART 73 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TC-EEEEEETTEEEC--CCSSEEEET--------TEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCcEEECCCCEEEEEEEeCC--CC-EEEEEECCEECC--CCceEEEeC--------CEEEECcCCcccCEEEEEEEccC
Confidence 345667899999999999987 46 899999999987 345555542 58999999999999999999999
Q ss_pred CCCeEEEEEEEecCC
Q psy17146 714 YGSDSVEIMLKPQKS 728 (1011)
Q Consensus 714 ~G~~~~~~~l~V~~~ 728 (1011)
.|..+..+.|.|.+.
T Consensus 74 ~g~~~~~~~l~V~~~ 88 (95)
T 4hwu_A 74 VDSETWIFMVNVTDA 88 (95)
T ss_dssp SCEEEEEEEEEECCC
T ss_pred CCcEEEEEEEEEeCC
Confidence 999999999999765
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-11 Score=107.24 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=74.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEec-CCCceeeEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEA 622 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~ 622 (1011)
+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+.......|.|.++..+|+|.|+|.|.|. +....+..+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 5677788888889999999999999999999999999998887778899999999999999999999993 444566777
Q ss_pred EEEEcC
Q psy17146 623 TVYLKG 628 (1011)
Q Consensus 623 ~l~V~~ 628 (1011)
.|.|.+
T Consensus 90 ~v~V~~ 95 (96)
T 2ens_A 90 SISIIE 95 (96)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 777754
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=105.90 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=81.2
Q ss_pred CCceeeEEEEEEcCC-Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 615 FPEVGAEATVYLKGR-PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~~-P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
.+..+..+.|.|..+ |.|. .+....+.+|++++|.|.+.+. | .+.|+|+|..+. ...++.+.. ++....
T Consensus 4 ~g~~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~l~--~~~~~~~~~----~~~~~~ 74 (113)
T 2edh_A 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--A-PVEWWKGHETLR--DGDRHSLRQ----DGARCE 74 (113)
T ss_dssp CCCCCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--C-CCEEEESSSBCC--CSSSEEEEE----ETTEEE
T ss_pred CCCCcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--C-cEEEEECCEECC--CCCcEEEEE----CCCEEE
Confidence 445666778888754 5776 4567789999999999999775 6 799999999887 456777765 334568
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|.++..+|+|.|+|.| |..+..+.|.|...
T Consensus 75 L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~ 106 (113)
T 2edh_A 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106 (113)
T ss_dssp EEECSCCSTTCEEEEEEE----TTEEEEEEEEECCC
T ss_pred EEECCCChhhCEEEEEEe----CCCCEEEEEEEeCC
Confidence 999999999999999999 78888899988653
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=102.98 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=72.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
++.+...|....+.+|+.+.|.|.+.|+|.+.+.|+|++..........|.|.+++.+|+|.|+|.|.|..+...+..+.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 82 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence 45677788888999999999999999999999999999876655566789999999999999999999977665667777
Q ss_pred EEEcC
Q psy17146 470 VYLKG 474 (1011)
Q Consensus 470 v~v~~ 474 (1011)
|.|.+
T Consensus 83 l~V~~ 87 (91)
T 3bfo_A 83 IIIDE 87 (91)
T ss_dssp EEEC-
T ss_pred EEEeh
Confidence 77743
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=109.66 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=76.9
Q ss_pred EEEEEEcCCC-eee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 621 EATVYLKGRP-TII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 621 ~~~l~V~~~P-~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.|.|..+| .|. .+.+..+.+|++++|.|.+.|.|.| .+.|+|||..+.. ..++.+... .+....|.|.++
T Consensus 4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~l~~--~~~~~~~~~---~~~~~~L~I~~v 77 (115)
T 2cr6_A 4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHA--NELNEIDAQ---PGGYHVLTLRQL 77 (115)
T ss_dssp CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCC-SCEEEESSCEECC--SSSCCBCCB---TTTBCCBEECSC
T ss_pred cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCC-ccEEEECCEECCC--CCcEEEEEc---CCCEEEEEEcCC
Confidence 4456677766 555 4567889999999999999999999 8999999999874 345554321 244578999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
..+|+|.|+|. +|.....+.|.|.+.
T Consensus 78 ~~~D~G~Y~C~----~g~~~~~~~L~V~~~ 103 (115)
T 2cr6_A 78 ALKDSGTIYFE----AGDQRASAALRVTEK 103 (115)
T ss_dssp CTTTCEEEEEE----ETTEECCEEEEEECC
T ss_pred ChhhCEEEEEE----ECCeeEEEEEEEECC
Confidence 99999999999 477777788888643
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=103.61 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=68.8
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.|. .+.+..+.+|++++|.|.+.+ |.+ .+.|+|+|..+......+|.+.. ++....|.|.++..+|+|.|+|
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~l~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C 81 (103)
T 1x44_A 8 IMVTKQLEDTTAYCGERVELECEVSE-DDA-NVKWFKNGEEIIPGPKSRYRIRV----EGKKHILIIEGATKADAAEYSV 81 (103)
T ss_dssp CCCSBCCCCEEEETTEEEEEEEECSS-SSC-CCEEEETTEECCCSTTCSEEEEE----ETTEEEEEEEEECTTTCSEEEE
T ss_pred ceeeccCCCEEEECCCCEEEEEEecC-CCC-eEEEEECCEECCCCCceEEEEEE----cCCEEEEEECCCCcccCEEEEE
Confidence 3354 456778999999999999987 667 89999999998754333666664 3446799999999999999999
Q ss_pred EEEcCCCCeEEEEEEEec
Q psy17146 709 SVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~ 726 (1011)
.|.| .+..+.|.|.
T Consensus 82 ~a~n----~~~~~~l~V~ 95 (103)
T 1x44_A 82 MTTG----GQSSAKLSVD 95 (103)
T ss_dssp EETT----EEEEEEEEEE
T ss_pred EECC----CcEEEEEEEe
Confidence 9998 4666677764
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-11 Score=104.70 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=73.4
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE-cCCcceeeEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV-MGFPEVGAEA 468 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n-~~~~~~s~~~ 468 (1011)
+|.+...|....+.+|+.++|.|.+.|.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.|.| .++...+..+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 456777788888999999999999999999999999998877666788999999999999999999999 4566677778
Q ss_pred EEEEcC
Q psy17146 469 TVYLKG 474 (1011)
Q Consensus 469 ~v~v~~ 474 (1011)
.|.|..
T Consensus 90 ~v~V~~ 95 (96)
T 2ens_A 90 SISIIE 95 (96)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1011 | ||||
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 7e-11 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 2e-06 | |
| d1vcaa1 | 109 | b.1.1.3 (A:91-199) Vascular cell adhesion molecule | 8e-11 | |
| d1vcaa1 | 109 | b.1.1.3 (A:91-199) Vascular cell adhesion molecule | 5e-04 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 8e-10 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-05 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-05 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-05 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-05 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 2e-04 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 7e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-05 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-05 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 0.002 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 0.004 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 0.004 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-07 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 3e-04 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 4e-08 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 6e-05 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 7e-05 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 7e-05 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 0.004 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 4e-08 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-07 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 7e-07 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 7e-07 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-04 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 1e-07 | |
| d1ncna_ | 110 | b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human | 2e-07 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-07 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-07 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 2e-06 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-05 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-04 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 0.003 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-07 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-07 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-06 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 6e-06 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 0.003 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 0.004 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 5e-07 | |
| d1neua_ | 119 | b.1.1.1 (A:) Myelin membrane adhesion molecule P0 | 6e-07 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 6e-07 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-05 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 7e-07 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 8e-04 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 7e-07 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 7e-07 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 4e-06 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 8e-07 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 5e-05 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 0.002 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-06 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-06 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-05 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-04 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 0.003 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 5e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 0.002 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 0.003 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-06 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-05 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 0.004 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 3e-05 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 2e-06 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 3e-06 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 6e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 6e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 8e-04 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 6e-05 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 2e-05 | |
| d2nxyb1 | 97 | b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho | 2e-05 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-05 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-04 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-04 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 2e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 2e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 0.003 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 0.003 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 3e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 7e-04 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 0.004 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 4e-05 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-05 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 4e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 5e-04 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 0.001 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 0.001 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 8e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 0.004 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 9e-05 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 9e-05 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-04 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-04 | |
| d1qfoa_ | 118 | b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mo | 1e-04 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 2e-04 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 4e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.001 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-04 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-04 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 3e-04 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 0.001 | |
| d1eaja_ | 124 | b.1.1.1 (A:) Coxsackie virus and adenovirus recept | 3e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 5e-04 | |
| d1fnla2 | 89 | b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C | 6e-04 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 9e-04 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 0.001 | |
| d2aq2a1 | 110 | b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse ( | 0.001 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 0.001 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 0.001 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 0.002 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 0.002 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 0.003 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.002 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 0.002 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 0.003 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 0.003 | |
| d2g5ra1 | 121 | b.1.1.1 (A:24-144) N-terminal domain of sialic aci | 0.003 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 0.003 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 0.004 | |
| d2bnub1 | 112 | b.1.1.1 (B:2-113) T-cell antigen receptor {Human ( | 0.004 |
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 7e-11
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 623 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682
T+ + G P I S +TQ + G+ +++C S PPP+++ WS++ + G+S Y+V
Sbjct: 1 TLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60
Query: 683 DPLKEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728
+EG+ STL I R D +YNC+ N +GSD+ I LK Q S
Sbjct: 61 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 2e-06
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 125 TLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184
TLTV PP I T + + +++C + PP I W + S
Sbjct: 1 TLTVNGPP---IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 57
Query: 185 ASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLK 229
V STL ++ + T + C A N+ ++ RLK
Sbjct: 58 VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 8e-11
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P P I L + I ++C A+ P + G + + E +
Sbjct: 2 PKDPEIHLSGPL--EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 59
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADR-----TYKVARLKLLVKYAP 236
T + TP E C+A+ D T + A +L V +P
Sbjct: 60 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 109
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 5e-04
Identities = 10/80 (12%), Positives = 20/80 (25%)
Query: 641 IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700
G V+CS + P +++ + + S + + E +
Sbjct: 14 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE 73
Query: 701 DHFGVYNCSVSNPYGSDSVE 720
D V C
Sbjct: 74 DIGKVLVCRAKLHIDEMDSV 93
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 54.4 bits (130), Expect = 8e-10
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
+ R +T + C A P P + W G+E + +
Sbjct: 6 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ---- 60
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+LI+ G Y C V N YGS + L
Sbjct: 61 -HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
ME + + V C + ++W K+ + R +
Sbjct: 10 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN------GKEFKQEHRIGGY-KVRNQHW 62
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
SL + V+ D Y C V G + L V+
Sbjct: 63 SLIMESVVPSDKGNYTCVVENE-YGS---INHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTV 194
++ ++ C A G P + W+ R+ +
Sbjct: 7 TEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---- 61
Query: 195 KSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
+L++ +TC +N L ++
Sbjct: 62 -WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 391 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 436
P + + V V C GNP P + W+ + KV
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61
Query: 437 PNLTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473
+L + G Y C E G T +L
Sbjct: 62 WSLIMESVVPSDKGNYTCVVE----NEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 545 PRF----RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNS 590
P + + V V C GNP P + W+ + KV
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61
Query: 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 627
+L + G Y C E G T +L
Sbjct: 62 WSLIMESVVPSDKGNYTCVVE----NEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 9/79 (11%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA-------SATELYLTNITRHQHDS-IV 368
V+ C A NP RW N + L + D
Sbjct: 19 AANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 77
Query: 369 KCEVHNDVGKSEDSETLDV 387
C V N+ G + LDV
Sbjct: 78 TCVVENEYGSINHTYHLDV 96
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 7e-09
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 628 GRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G P + + ++ G+TA + C + S+PP W + +
Sbjct: 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 687 EGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+S L I + G Y C+ ++ GSD I L+
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQ--------------PVPAAASATELYLTNITRH 362
EG L CK+E+ P + WY V ++ +EL++ N+
Sbjct: 16 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 75
Query: 363 QHDSIVKCEVHNDVGKSEDSETLDV 387
+C + G + TL V
Sbjct: 76 ADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ + G L C+ V W + L S +G
Sbjct: 4 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 63
Query: 89 DYSLEIYPVMLDDDA-RYQCQVSTGILGEPAIRSRFATLTV 128
L I + ++ D +Y+C ++ G TL V
Sbjct: 64 RSELHIENLNMEADPGQYRCNGTS-SKGS---DQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 134 PPRIVQGD-TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
PPR+ + + E L C S + P + W T + + E+ +
Sbjct: 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61
Query: 193 TVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLK 229
+S L + + + C ++ + L+
Sbjct: 62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-------------VVGNSP 437
PR +A S ++ G L+C + P ++ +D V +S
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 438 NLTLLMTSD----DLAGRYYCKASVMGFPEVG-AEATVYLKGR 475
+ L + G+Y C + G +A + L+ R
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGT----SSKGSDQAIITLRVR 101
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-------------VVGNSP 591
PR +A S ++ G L+C + P ++ +D V +S
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 592 NLTLLMTSD----DLAGRYYCKASVMGFPEVG-AEATVYLKGR 629
+ L + G+Y C + G +A + L+ R
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGT----SSKGSDQAIITLRVR 101
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 51.1 bits (121), Expect = 2e-08
Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 10/107 (9%)
Query: 627 KGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684
+ RP + + + G C +S P + W E+ G D
Sbjct: 2 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKV 60
Query: 685 LKEGIK-------STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
LK L IR + G Y C N G L
Sbjct: 61 LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIG-----SDEE 87
P + + VVG V C+V D +QW K G G ++ + ++
Sbjct: 12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 71
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
L I V +D Y C +G A LTVL
Sbjct: 72 EIEVLYIRNVTFEDAGEYTCLAGNS-IGI---SFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 134 PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWI-----DGTGTVMSNVRVTEEAS 186
P + G T ++E C I WI +G+ + +
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 187 VDGRRTTVK--STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231
G TT K L + +TC A N+ ++ A L +L
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.9 bits (118), Expect = 4e-08
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 630 PTIISHRTQFGI---PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
PT+ + ++ G + + C A P P ++W+ GE I DD +
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKHIFS--- 59
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L IR + Y C N G I LK
Sbjct: 60 -DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 6e-05
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 134 PPRIVQGDTLYTTEDRE---IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR 190
PP + ++ + L C A+G P ++W + + E+
Sbjct: 3 PPTVQARQSIVNATANLGQSVTLVC-DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61
Query: 191 RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
S L + ++ + C A+N A LK+ K
Sbjct: 62 S----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 7e-05
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 391 PRFRARPYSVQ--VDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------VVGNSP 437
P +AR V + G V L+CD DG P P ++W + +S
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 438 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK 473
LT+ + Y C A G + V+ K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 7e-05
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 545 PRFRARPYSVQ--VDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------VVGNSP 591
P +AR V + G V L+CD DG P P ++W + +S
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 592 NLTLLMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLK 627
LT+ + Y C A G + V+ K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.6 bits (81), Expect = 0.004
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 33 EPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
+ TA +G VTL C + WTKD + ++ S
Sbjct: 11 SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS------E 64
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L I V +D+A Y C GE + L V
Sbjct: 65 LTIRNVDKNDEAEYVCIAENK-AGE---QDASIHLKVFA 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 4e-08
Identities = 25/108 (23%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE 87
+ P+DQ G V L +V + W K + + M + E
Sbjct: 2 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH--------MKVENSE 53
Query: 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
L I + Y V LG R LTV+ PDPP
Sbjct: 54 NGSKLTILAARQEHCGCYTLLVENK-LGS---RQAQVNLTVVDKPDPP 97
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P II Q G++ + P TW ++I
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQESEHMKVE------NSE 53
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S L I +R +H G Y V N GS ++ L
Sbjct: 54 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN---------SPNLTL 441
P+ P +V G V L V G TW+ LT+
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
L + G Y +G A+ + + +P
Sbjct: 61 LAARQEHCGCYTLLVENKLG--SRQAQVNLTVVDKP 94
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN---------SPNLTL 595
P+ P +V G V L V G TW+ LT+
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
L + G Y +G A+ + + +P
Sbjct: 61 LAARQEHCGCYTLLVENKLG--SRQAQVNLTVVDKP 94
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 135 PRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
P+I+Q + +EL G P TW+ + + + E S +G
Sbjct: 1 PQIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--- 56
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
L + ++ H +T +N L ++ K P
Sbjct: 57 ---KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 38 TAVVGSRVTLPCRV---IDKTGVLQWTKDDFALGPHRNLSG-----FDRYAMIGSDEEGD 89
T V TL C +++ + +SG + D +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
S+ I + D+ Y+C V + R A +T+ V
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYE-KDAFKREHLAEVTLSV 104
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 2e-07
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 38 TAVVGSRVTLPCRVIDKTGVLQWTKD------------DFALGPHRNLSGFDRYAMIGSD 85
A LPC+ + + LG + S +Y S
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 86 EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFAT-LTVL 129
+ ++L ++ + + D YQC + + + L+VL
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 391 PRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKVVGNSPNLTLLMTS 445
P++ +P + V +G V + C V G PAP + W H + L +
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVK 62
Query: 446 DDLAGRYYCKAS 457
+ G Y C+A+
Sbjct: 63 NGDKGYYGCRAT 74
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 545 PRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHE----DSDKVVGNSPNLTLLMTS 599
P++ +P + V +G V + C V G PAP + W H + L +
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVK 62
Query: 600 DDLAGRYYCKAS 611
+ G Y C+A+
Sbjct: 63 NGDKGYYGCRAT 74
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G + C +P P V WS+ + + G + L+I+ ++
Sbjct: 17 QGQDVTIPCKVTGLPAPN-VVWSHNAKPLSGGRATVTDS-----------GLVIKGVKNG 64
Query: 702 HFGVYNCSVSNPYGSDSVEIMLK 724
G Y C +N +G E +++
Sbjct: 65 DKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 41.3 bits (96), Expect = 4e-05
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 134 PPRIVQG--DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P+ Q + + +++ + C G P + W + GR
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAKPLS-----------GGRA 49
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
T S LV+ K + C+A N Y ++
Sbjct: 50 TVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.2 bits (88), Expect = 4e-04
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAA---ASATELYLTNITRHQHDSIVKCEVH 373
+G DV + CK P W N +P+ + + L + + C
Sbjct: 17 QGQDVTIPCKVTGLP-APNVVWSHNAKPLSGGRATVTDSGLVIKGVKN-GDKGYYGCRAT 74
Query: 374 NDVGKSEDSETLDV 387
N+ G + V
Sbjct: 75 NEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.5 bits (81), Expect = 0.003
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 29 KFAMEPQDQTAV-VGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
K+ +P+ V G VT+PC+V + W+ + L R
Sbjct: 4 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-------------T 50
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
D L I V D Y C+ + G+ + + V
Sbjct: 51 VTDSGLVIKGVKNGDKGYYGCRATN-EHGD---KYFETLVQV 88
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (110), Expect = 4e-07
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---------SDKVVGNSPNLTL 441
PRF +PY +V G N C V + P +TW +D + GN LT+
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 442 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 476
D G Y +A G E V P
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (110), Expect = 4e-07
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---------SDKVVGNSPNLTL 595
PRF +PY +V G N C V + P +TW +D + GN LT+
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 596 LMTSDDLAGRYYCKAS-VMGFPEVGAEATVYLKGRP 630
D G Y +A G E V P
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 8/103 (7%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I G +A C + PP E SV
Sbjct: 1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE-------LKQSVKYMKRYN 53
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
G L I + D G Y N YG+ + L +
Sbjct: 54 GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (102), Expect = 6e-06
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+F ++P G CRVI + + + +
Sbjct: 3 RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWH-------KDDRELKQSVKYMKRYNGN 55
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP 134
DY L I V DD Y + G + L V +P
Sbjct: 56 DYGLTINRVKGDDKGEYTVRAKN-SYGT---KEEIVFLNVTRHSEP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (81), Expect = 0.003
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 316 VEGTDVRLYCKAEANPS-----HMKYRWYINDQPVPAAASATELYLTNITRHQHDS-IVK 369
EG YC+ A+ H R + + LT D
Sbjct: 14 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 73
Query: 370 CEVHNDVGKSEDSETLDVTYGP 391
N G E+ L+VT
Sbjct: 74 VRAKNSYGTKEEIVFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (81), Expect = 0.004
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 135 PRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTT 193
PR + E + C P +TW + +V+ + R
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYC-RVIASSPPVVTWHKDDRELKQSVKYMK------RYNG 54
Query: 194 VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
L + K +T +A+N+ ++ L + P
Sbjct: 55 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 23/118 (19%)
Query: 38 TAVVGSRVTLPCRVIDKTGV----LQWTKDDFALGPHRNLSGFDRYAMIGSD-------- 85
A+VG LPCR+ + W + F+ H +G D+ A +
Sbjct: 13 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72
Query: 86 ----EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP---DPPR 136
EG +L I V D+ Y C L V P +P R
Sbjct: 73 KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSY----QEEAAVELKVEDPFYWINPGR 126
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 6e-07
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 23/116 (19%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV-------------------LQWTKDDFALGPHRNLS 74
++ VGS+VTL C V + +
Sbjct: 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGT 65
Query: 75 GFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
+R +G D S+ I+ + D+ + C V P I + + +T+ V
Sbjct: 66 FKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNP----PDIVGKTSQVTLYV 117
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 6e-07
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDG 189
VPP P + + T L C +G PP+E TW + +N + T S
Sbjct: 1 VPPSKPTVNIPSSA--TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58
Query: 190 RRTTVK-STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
LV P ++C+A+N +++
Sbjct: 59 YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 630 PTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED-PLKE 687
P+ + G+ A + CS PP + TW G + + +
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L+ G Y+C N YG+ ++
Sbjct: 63 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 7e-07
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+ +D TA G RV L C V + ++W K+ + P + E + L
Sbjct: 6 QLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPG------PKSRYRIRVEGKKHIL 59
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
I D A Y + G A L+V
Sbjct: 60 IIEGATKADAAEYSVMTTGG--------QSSAKLSV 87
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 8e-04
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ +EC S V W GEEI G Y + + K LII +
Sbjct: 15 GERVELECEV-SEDDAN-VKWFKNGEEIIPGPKSRYRIRVEG----KKHILIIEGATKAD 68
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
Y+ + S + + LK
Sbjct: 69 AAEYSVMTTGGQSSAKLSVDLK 90
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 388 TYGPRFRARPYSVQVDRGAG---VNLLCDVDGNPAPEITWIHEDSDKVVGNSPN------ 438
+YGP F +P G+ V L C NP W ++ +G
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 439 --LTLLMTSDDLAGRYYCKAS 457
+ AG Y C A+
Sbjct: 62 DLVISNPVKAKDAGSYQCVAT 82
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 542 TYGPRFRARPYSVQVDRGAG---VNLLCDVDGNPAPEITWIHEDSDKVVGNSPN------ 592
+YGP F +P G+ V L C NP W ++ +G
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 593 --LTLLMTSDDLAGRYYCKAS 611
+ AG Y C A+
Sbjct: 62 DLVISNPVKAKDAGSYQCVAT 82
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 44.1 bits (103), Expect = 4e-06
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699
G + + C A + PP D L +I +
Sbjct: 19 GSAEEKVTLTCRARANPPA--TYRWKMNGTELKMGPDSRYRLVAG------DLVISNPVK 70
Query: 700 HDHFGVYNCSVSNPYGS-DSVEIMLK 724
G Y C +N G+ S E L+
Sbjct: 71 AKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (107), Expect = 8e-07
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 631 TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690
T+ R+Q PG C+A S P + W+ + D+
Sbjct: 5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-----------N 53
Query: 691 STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L IR + G Y C+ SN + D L
Sbjct: 54 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 5e-05
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 4/87 (4%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA---SATELYLTNIT 360
V V S + G DV C A++ W + L + N+
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQ 62
Query: 361 RHQHDSIVKCEVHNDVGKSEDSETLDV 387
C N + + TL V
Sbjct: 63 PSDAG-TYVCTGSNMFAMDQGTATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 13/98 (13%)
Query: 134 PPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
P + + + ++ C + + P + W + R
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL-----------PSRA 49
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
L + + T+ C N A L
Sbjct: 50 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.6 bits (107), Expect = 1e-06
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 389 YGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---SDKVVGNSPNLTLLMT 444
Y P +A+ P G V L C GNP P+I W D + K + + P L +
Sbjct: 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV 62
Query: 445 SDDLAGRYYCKAS-VMGFPEVGAEATVY 471
+ G Y C+A + G ++
Sbjct: 63 DFEDEGTYECEAENIKGRDTYQGRIIIH 90
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.6 bits (107), Expect = 1e-06
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 543 YGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---SDKVVGNSPNLTLLMT 598
Y P +A+ P G V L C GNP P+I W D + K + + P L +
Sbjct: 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV 62
Query: 599 SDDLAGRYYCKAS-VMGFPEVGAEATVY 625
+ G Y C+A + G ++
Sbjct: 63 DFEDEGTYECEAENIKGRDTYQGRIIIH 90
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 630 PTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
P+I + + + G +EC AF P P+ + W
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSKWLSSEP-------- 55
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
L I+ + G Y C N G D+ + +
Sbjct: 56 ----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.6 bits (89), Expect = 3e-04
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 304 EVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQ 363
++ + G V L C A NP + +W D + ++E L
Sbjct: 6 SIKAKFPADTYALTGQMVTLECFAFGNPV-PQIKWRKLDGSQTSKWLSSEPLLHIQNVDF 64
Query: 364 HDS-IVKCEVHNDVGKSEDSETLDV 387
D +CE N G+ + +
Sbjct: 65 EDEGTYECEAENIKGRDTYQGRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 35.6 bits (81), Expect = 0.003
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 233 KYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNI 292
+YAP ++ + G V L C A NP + +W D + ++E L
Sbjct: 2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPV-PQIKWRKLDGSQTSKWLSSEPLLHIQ 60
Query: 293 TRHQHDS-IVKCEVQ 306
D +CE +
Sbjct: 61 NVDFEDEGTYECEAE 75
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI-----HEDSDKVVGNSPNLTLLMTS 445
P + + D G+ + C G P P + W+ +++ + L
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61
Query: 446 DDLAGRYYCKAS 457
+ +G Y C A
Sbjct: 62 LEDSGMYQCVAE 73
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWI-----HEDSDKVVGNSPNLTLLMTS 599
P + + D G+ + C G P P + W+ +++ + L
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61
Query: 600 DDLAGRYYCKAS 611
+ +G Y C A
Sbjct: 62 LEDSGMYQCVAE 73
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 12/99 (12%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P + G R C A P P E
Sbjct: 1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-----------SQNRIE 49
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
L + + G+Y C N +G+ L Q
Sbjct: 50 VSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 316 VEGTDVRLYCKAEANPS---HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEV 372
G+D+R C A P S EL + + + + +C
Sbjct: 14 DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVL-EDSGMYQCVA 72
Query: 373 HNDVGKSEDSETLDV 387
N G S L V
Sbjct: 73 ENKHGTVYASAELTV 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 35.6 bits (81), Expect = 0.003
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ D A +GS + C K D +N E
Sbjct: 3 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-----------RIEVS 51
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
L ++L+D YQC G A LTV
Sbjct: 52 GGELRFSKLVLEDSGMYQCVAENK-HGT---VYASAELTV 87
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDG 189
VPP P I ++ T L C +G PP+E +W ++++ A ++
Sbjct: 1 VPPSKPTISVPSSV--TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58
Query: 190 RRTT--VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
T L+ P + + CQAQN + +
Sbjct: 59 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 630 PTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED--PLK 686
P+ + + G+ A + CS PP + +W G + + +
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718
+ LI G Y C N YG+
Sbjct: 63 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 94
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.004
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDE 86
+ +G+R L C D + W KD ++ + +
Sbjct: 4 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 63
Query: 87 EGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
L PV D Y CQ G G A+RS A +
Sbjct: 64 PKSGDLIFDPVTAFDSGEYYCQAQNG-YGT-AMRSEAAHMDA 103
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 9/111 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRV-----IDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGS 84
F +PQ T VG +T +V + K + + L +
Sbjct: 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135
+ ++I + Y+C+V+ S L V
Sbjct: 63 SRVYTFEMQIIKAKDNFAGNYRCEVTY-KDKF---DSCSFDLEVHESTGTT 109
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY-----SVLEDPLKEGIKSTLIIRE 697
G+ + K T + + +S + + I +
Sbjct: 15 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 74
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLK 724
++ + G Y C V+ DS L+
Sbjct: 75 AKDNFAGNYRCEVTYKDKFDSCSFDLE 101
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 2e-06
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 629 RPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE------IGVGSSDDYSV 680
RP I+S T G ++ C+ W + G +
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 681 LEDPLKEGIKSTLIIR-ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+ + + + L I + + C N +G D+ I L
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 106
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
+ ++EG + L C N K +Y + + + + +TN T + C
Sbjct: 9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNAT-VEDSGTYYCT 67
Query: 372 VHNDVG-KSEDSETLDVTYGPR 392
+ + V PR
Sbjct: 68 GKVWQLDYESEPLNITVIKAPR 89
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
P T G V L C V + +QW KD + + S++ L
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ------LYIPVSEQHWIGFL 56
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ V D RY CQV G S+ LTV
Sbjct: 57 SLKSVERSDAGRYWCQVEDG-GET--EISQPVWLTV 89
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 397 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPNLTLLMTS 445
P + V +G V L C V+G P+I W+ + L+L
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62
Query: 446 DDLAGRYYCKASVMGFPEVGAEATVYLKG 474
AGRY+C+ G E+ + ++G
Sbjct: 63 RSDAGRYWCQVEDGGETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 551 PYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-----------SDKVVGNSPNLTLLMTS 599
P + V +G V L C V+G P+I W+ + L+L
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62
Query: 600 DDLAGRYYCKASVMGFPEVGAEATVYLKG 628
AGRY+C+ G E+ + ++G
Sbjct: 63 RSDAGRYWCQVEDGGETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 8e-04
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701
G ++ CS + P+ + + ++ L ++
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQ-----NLDQLYIPVSEQHWIGFLSLKSVERS 64
Query: 702 HFGVYNCSVSNPYGSD-SVEIMLK 724
G Y C V + ++ S + L
Sbjct: 65 DAGRYWCQVEDGGETEISQPVWLT 88
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVI----DKTGVLQWTKDDFA-LGPHRNLSGFDRYAMIGS 84
F M PQD VG +T RV K V++W K + L + +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 85 DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ + L I Y+C+VST LTV
Sbjct: 67 SKVYLFELHITDAQPAFTGGYRCEVST-KDKF---DCSNFNLTV 106
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 6e-05
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK-----EGIKSTLIIRE 697
G + + + + SS L+ + L I +
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 698 SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728
++ G Y C VS D L ++
Sbjct: 79 AQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 34 PQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYS 91
Q VV VT K + + KD A + F + + S
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
L IY + D+ Y+ + + L VL
Sbjct: 62 LTIYNLTSSDEDEYEMESPN------ITDTMKFFLYVL 93
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 38 TAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRY----------AMIGSDEE 87
G V L C K + K+ + N F + ++
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 88 GDYSLEIYPVMLDDDARYQCQVS 110
G++ L I + ++D Y C+V
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVE 87
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 19/85 (22%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G++AR C P P KST I +
Sbjct: 14 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-------TTKYKSTFEISSVQASD 66
Query: 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727
G Y+ V N G E L QK
Sbjct: 67 EGNYSVVVENSEGKQEAEFTLTIQK 91
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLM-------- 443
R +P S+ V G CD DG P P +TW+ + +T
Sbjct: 1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60
Query: 444 --TSDDLAGRYYCKAS 457
+ D G Y
Sbjct: 61 SVQASD-EGNYSVVVE 75
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLM-------- 597
R +P S+ V G CD DG P P +TW+ + +T
Sbjct: 1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60
Query: 598 --TSDDLAGRYYCKAS 611
+ D G Y
Sbjct: 61 SVQASD-EGNYSVVVE 75
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 37.5 bits (86), Expect = 6e-04
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 11/100 (11%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+ +P+ T G C G T G + S + +
Sbjct: 1 RILTKPRSMTVYEGESARFSCDT---DGEPVPTVTWLRKGQVLSTSARHQVTT----TKY 53
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ EI V D+ Y V G+ + TLT+
Sbjct: 54 KSTFEISSVQASDEGNYSVVVENS-EGK---QEAEFTLTI 89
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 26 REQKFAMEPQDQTAVVGSRVTLPCRVI--DKTGVLQWTKDDFALGPHRNLSGFDRYAMIG 83
Q + + + + G L C V + W K + G + +
Sbjct: 2 DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLN---GTTCVKLEDRQTSWKE 58
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+ L PV+ +D+ Y+C + I S TL V
Sbjct: 59 EKNISFFILHFEPVLPNDNGSYRCSANF-QSNL--IESHSTTLYVT 101
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 629 RPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687
+P I++ R G T +E P P + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG-------AALAPELLVDAK 54
Query: 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726
+++ ++ G Y V N G D + Q
Sbjct: 55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
P+ +++ G NL D G P P TW
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV 38
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
P+ +++ G NL D G P P TW
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV 38
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 629 RPTIISHRTQFGIP-GDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVLEDPLK 686
+ ++ + ++ +P ++ ++ C+ P + + V + +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
S + G Y C VS G + E+ +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 7e-04
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEA 185
+V ++ + ++ I+L C + P E ++ G+ T + A
Sbjct: 3 SVYTAQSDVQVPENES--------IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITA 54
Query: 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
R T S + + N +TC + Y + L V
Sbjct: 55 PYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Query: 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694
+ C +TW + V + + + L
Sbjct: 9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK------EKLW 62
Query: 695 IRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
++ + G Y C V N ++I K ++ P
Sbjct: 63 FVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEP 98
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 6/92 (6%)
Query: 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201
L ++ + C + ITW + R K L
Sbjct: 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQAS------RIHQHKEKLWFV 64
Query: 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233
P K + + C +N++ K +
Sbjct: 65 PAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 96
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
PTI + + + P P + W Y G + + E
Sbjct: 5 PTITF--LESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L + H + G Y N YG D +I
Sbjct: 62 -GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 627 KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G P + G+ A + + +++ + V
Sbjct: 34 SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT--- 90
Query: 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
+S + + + GVY +V NP G D V + +K
Sbjct: 91 -KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 640 GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK-STLIIRES 698
+ + S P P + W + G + S LE E ++ L + +
Sbjct: 12 AVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70
Query: 699 RHDHFGVYNCSVSNPYGSDSVEIMLK 724
H + G Y +NP+G S IM
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAA 96
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 12/101 (11%)
Query: 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGD 89
F P Q G + C V+ + +
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIW--------KHKGRDVILKKDVRFIVLSN 55
Query: 90 YSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
L+I + D+ Y+C+ GE F + V+V
Sbjct: 56 NYLQIRGIKKTDEGTYRCEGRILARGE----INFKDIQVIV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702
G+ A + C S PP + + I + + L IR +
Sbjct: 16 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIRGIKKTD 67
Query: 703 FGVYNCSVSNPYGSDSVEIMLK 724
G Y C + ++
Sbjct: 68 EGTYRCEGRILARGEINFKDIQ 89
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 442
F+ P + G ++CDV + P I W H+ D +V ++ L +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 443 MTSDDLAGRYYCKASV 458
G Y C+ +
Sbjct: 62 GIKKTDEGTYRCEGRI 77
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------KVVGNSPNLTLL 596
F+ P + G ++CDV + P I W H+ D +V ++ L +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 597 MTSDDLAGRYYCKASV 612
G Y C+ +
Sbjct: 62 GIKKTDEGTYRCEGRI 77
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 8e-05
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 124 ATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTVMSNVRVT 182
++TV RI + + ++L C S P E + G T +
Sbjct: 3 GSVTVHSSEPEVRIPENNP--------VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNK 54
Query: 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232
AS + R T + + + T+TC +Y ++KL+V
Sbjct: 55 ITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.004
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 628 GRPTIISHRTQFGIP-GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686
G T+ S + IP + ++ C+ P +G+ + ++ +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 687 EGIKST-LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
T + + + G Y C VS G+ E+ +K
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT 444
P+ R S V +G+ + V G P PE W I + +
Sbjct: 5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64
Query: 445 SDDL----AGRYYCKASVMGFPEVGAEATVYLKGR 475
D+ + KA E + A + ++ +
Sbjct: 65 IRDVTGEDSASIMVKAI-NIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITW------IHEDSDKVVGNSPNLTLLMT 598
P+ R S V +G+ + V G P PE W I + +
Sbjct: 5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64
Query: 599 SDDL----AGRYYCKASVMGFPEVGAEATVYLKGR 629
D+ + KA E + A + ++ +
Sbjct: 65 IRDVTGEDSASIMVKAI-NIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P I ++Q G A P PE W G +I + ED
Sbjct: 5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKIERSDRIYWYWPEDN---- 59
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
L+IR+ + N G S L
Sbjct: 60 -VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 94
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 37.9 bits (87), Expect = 5e-04
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 134 PPRIVQG-DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P+I + + + + GKP E W + + R+ D
Sbjct: 4 APKIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229
V + + + +A N A T A L
Sbjct: 63 LVIRDV-----TGEDSASIMVKAINIAGETSSHAFLL 94
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 16/95 (16%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGV----------------LQWTKDDFALGPHRNLSGFD 77
P++ + GS + +PC V + +
Sbjct: 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 78 RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
R ++G+ + +L + + +D Y +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 630 PTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688
P + + +EC K +W G+ +
Sbjct: 3 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA-------LRK 55
Query: 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724
+ +L+ + G Y C P G S I +
Sbjct: 56 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 92
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
+P + + L C + ++++ ++ ++ + +
Sbjct: 4 VLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSW-------KKDGKSYNWQEHNAALRKD 56
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ SL D+ YQC T G SR +
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETP-AGV--ASSRVISFRK 93
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 32 MEPQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY 90
+ Q+ G T C I + + + S
Sbjct: 6 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ-----GIDVRDAPLKEIKVTSSRRFIA 60
Query: 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
S + D +Y+C + T G S +A L V
Sbjct: 61 SFNVVNTTKRDAGKYRCMIRT-EGGV--GISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 4/87 (4%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P + + G A +CSA W + +
Sbjct: 3 PHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA-- 60
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGS 716
+ + + G Y C + G
Sbjct: 61 --SFNVVNTTKRDAGKYRCMIRTEGGV 85
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 620 AEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678
AE ++K P + G AR +C P PE + +
Sbjct: 1 AEEKPHVK--PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQID 58
Query: 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
E +L I E D Y C N G + L
Sbjct: 59 Y------DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEG 88
F D V GS C+V + + N R+ I DEEG
Sbjct: 10 YFTKTILDMEVVEGSAARFDCKVEG------YPDPEVMWFKDDNPVKESRHFQIDYDEEG 63
Query: 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128
+ SL I V DDDA+Y C+ LGE + A L V
Sbjct: 64 NCSLTISEVCGDDDAKYTCKAVNS-LGE---ATCTAELLV 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 623 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682
TVY P ++S + +E PPP T + + S V
Sbjct: 1 TVYYP--PRVVS--LEEPELRLEHCIEFVVRGNPPP---TLHWLHNGQPLRESKIIHVEY 53
Query: 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724
E + L+ + H + G Y NP G+ + I
Sbjct: 54 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.001
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 127 TVLVPPDPPRIVQGDTLYTTEDREIELECI--SANGKPPAEITWIDGTGTVMSNVRVTEE 184
TV PP R+V E CI G PP + W+ + + + E
Sbjct: 1 TVYYPP---RVVS-----LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 52
Query: 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236
+G + L+ ++N +T A+N + L + P
Sbjct: 53 YYQEGEISE--GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 102
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 25/118 (21%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRNL--------------- 73
+ G LPC+ ++W +
Sbjct: 11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYP 70
Query: 74 SGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130
R +D + GD S+ + + L D YQC+V P + ++ L VLV
Sbjct: 71 DLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKIHLVVLV 124
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 3/107 (2%)
Query: 625 YLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE-IGVGSSDDYSVLED 683
YL P +T I G +++C + P +TW R D+
Sbjct: 1 YLIASPAKTHEKT--PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 58
Query: 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFP 730
+G I+ + Y C+ N + V ++ K
Sbjct: 59 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 105
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 37.6 bits (86), Expect = 6e-04
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
E + L C + N + K + N + ++ ++ T C
Sbjct: 11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLK-DSGSYFCR 69
Query: 372 VHNDVG-KSEDSETLDVTY 389
S ++ + +T
Sbjct: 70 GLVGSKNVSSETVNITITQ 88
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.6 bits (86), Expect = 9e-04
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 34 PQDQTAVVGSRVTLPCRVI-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSL 92
+D A G + C + G + K ++++G + + L
Sbjct: 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK------NGKDVNGNPEDRITRHNRTSGKRL 63
Query: 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
+ +D+ Y C+V G +G+ + LTV+
Sbjct: 64 LFKTTLPEDEGVYTCEVDNG-VGK--PQKHSLKLTVV 97
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.2 bits (85), Expect = 0.001
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 630 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689
P +S + GD + C S P + G+++ D +
Sbjct: 6 PQYVS-KDMMAKAGDVTMIYCMYGSNPMGY-PNYFKNGKDVNGNPEDRITRHNRTSG--- 60
Query: 690 KSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724
L+ + + + GVY C V N G + L
Sbjct: 61 -KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 95
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKD-----------DFALGPHRNLSGFDRYAMI 82
P+++ AV G +VTL C+ + + W + + +G D Y
Sbjct: 8 PRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEAS 67
Query: 83 GSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
+E +SL + + Y C G
Sbjct: 68 RPSQE-QFSLILESATPSQTSVYFCASGGG 96
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 450
P V V L C +P T + + + + + + + +G
Sbjct: 6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSG 65
Query: 451 RYYCKAS 457
Y C+ +
Sbjct: 66 EYRCQTN 72
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAG 604
P V V L C +P T + + + + + + + +G
Sbjct: 6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSG 65
Query: 605 RYYCKAS 611
Y C+ +
Sbjct: 66 EYRCQTN 72
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.002
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 389 YGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426
YGPR R P + + +C GNP PE+ +
Sbjct: 1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 40
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.002
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 543 YGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580
YGPR R P + + +C GNP PE+ +
Sbjct: 1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 40
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.003
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 305 VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQH 364
+ G+ E + C+A NP + + + + +
Sbjct: 6 DERDCPGNWTWPENSQQTPMCQAWGNP-LPELKCLKDGTFPL------PIGESVTVTRDL 58
Query: 365 DSIVKCEVHNDVGKSEDSETLDVTY 389
+ C + G+ T++V
Sbjct: 59 EGTYLCRARSTQGEVTREVTVNVLS 83
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.002
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 6/109 (5%)
Query: 134 PPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR 191
PPR V + +EC +P +T G +
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGN--ETLHYETFGKAAPAP 58
Query: 192 TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQV 240
+T T +E + F+C A + +++
Sbjct: 59 QEATATFNSTADREDGHRNFSCLAVLDLMSRG--GNIFHKHSAPKMLEI 105
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 639 FGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS-TLIIR 696
+G G + F ++V W + L+ E + + L I+
Sbjct: 6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 65
Query: 697 ESRHDHFGVYNCSVSNPYGSDSVE 720
D G YN +V + G+ +
Sbjct: 66 NLTRDDSGTYNVTVYSTNGTRILN 89
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.003
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 371
EG + L C + + +K ++ N + + S + H C
Sbjct: 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHS-HSGDYHCT 67
Query: 372 VHNDVGKSEDSETLDVT 388
+ S+ + +T
Sbjct: 68 GNIGYT-LYSSKPVTIT 83
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTL 693
S+R F G TA ++CS S + + + L
Sbjct: 3 SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLM----------GRKNL 52
Query: 694 IIRESRHDHFGVYNCSVSNPYGSDSVEIML 723
+I GVY C + +V ++
Sbjct: 53 LIFNLSEGDSGVYQCLSEERVKNKTVFQVV 82
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.003
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 19/98 (19%)
Query: 34 PQDQTAVVGSRVTLPCRV------IDKTGVLQWTKDDFALGPHRNLSGFD---------- 77
T G V + C + +
Sbjct: 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE 67
Query: 78 ---RYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112
R+ ++G + + +L I + D RY ++ G
Sbjct: 68 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG 105
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (83), Expect = 0.003
Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 9/92 (9%)
Query: 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEE----- 87
E + V L + + ++ F + + +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 88 ----GDYSLEIYPVMLDDDARYQCQVSTGILG 115
+ SL + + D Y ++
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYR 96
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.004
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 134 PPRI-VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT 192
P R+ + + +++ L C G P A++T + E
Sbjct: 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTV-------VLLRGEKELKREPAVGE 56
Query: 193 TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQV 240
+ T + +++HH F+C+ + D + L ++Q
Sbjct: 57 PAEVTTTVLVRRDHHGAQFSCRTEL--DLRPQGLELFENTSAPYQLQT 102
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 112 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.004
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 10/106 (9%)
Query: 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNL----------SGFDRYAMIG 83
P+ Q G +TL C + W + D +G +
Sbjct: 6 PKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVS 65
Query: 84 SDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129
D+ L + + Y C S + LTVL
Sbjct: 66 RSTTEDFPLRLLSAAPSQTSVYFCASSYVGNTGELFFGEGSRLTVL 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1011 | |||
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.55 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.54 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.54 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.52 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.52 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.49 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.46 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.46 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.44 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.43 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.42 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.41 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.41 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.41 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.41 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.4 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.4 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.4 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.4 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.39 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.39 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.39 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.37 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.37 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.36 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.36 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.36 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.35 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.34 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.34 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.33 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.33 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.32 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.32 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.32 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.31 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.29 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.29 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.29 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.28 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.28 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.28 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.27 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.25 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.24 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.24 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.24 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.24 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.24 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.24 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.24 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.23 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.23 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.23 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.23 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.23 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.23 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.23 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.23 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.23 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.22 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.22 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.21 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.21 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.2 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.2 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.19 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.19 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.18 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.18 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.17 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.17 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.17 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.16 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.16 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.16 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.15 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.15 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.14 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.13 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.13 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.13 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.13 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.12 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.12 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.11 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.11 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.11 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.11 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.1 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.1 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.09 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.08 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.07 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.07 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.05 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.04 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.02 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.02 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.01 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.98 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.95 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.94 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.94 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.94 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.93 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.92 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.9 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.88 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 98.85 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.85 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.84 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.84 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.81 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.78 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.78 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.74 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.68 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.68 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.66 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.66 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.64 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.63 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.63 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.62 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.62 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.61 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.61 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.59 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.56 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.53 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.53 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.53 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.52 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.52 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.51 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.51 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.5 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.49 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.46 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.45 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.43 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.43 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.42 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.4 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.4 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.4 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.4 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.39 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.39 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.38 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.38 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.38 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.37 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.36 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.35 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.34 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.33 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.32 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.32 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.32 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.31 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.31 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.3 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.3 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.29 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 98.29 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.27 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.26 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.26 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.24 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.24 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 98.23 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.23 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 98.22 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.22 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.22 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.2 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 98.18 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.17 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.17 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.16 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.15 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.15 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.15 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.13 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.13 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 98.12 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.12 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.11 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.11 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.1 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 98.09 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.09 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.09 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.08 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.06 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.05 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.04 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.04 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.0 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.98 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.98 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.97 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 97.97 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.96 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.94 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.94 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.93 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.93 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.93 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.93 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.93 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.91 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.9 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.88 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.88 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.88 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.88 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.87 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 97.87 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.87 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.87 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.86 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 97.86 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.86 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.86 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.85 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 97.84 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.84 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.83 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.83 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.83 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 97.83 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.83 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.82 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.82 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.81 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.81 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.8 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.8 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 97.79 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.79 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.79 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 97.79 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.78 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 97.78 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.77 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.77 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.76 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.76 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.75 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.75 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.74 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.74 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.74 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.73 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.71 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.71 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.71 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.7 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.69 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.69 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.69 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.69 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.68 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.67 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.66 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.66 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.66 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.66 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.65 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.65 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.64 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 97.63 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 97.63 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.62 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.62 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.62 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.6 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 97.6 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.6 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.59 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.59 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.58 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.58 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.58 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.58 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 97.58 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.57 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 97.57 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.57 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.56 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.56 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.56 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.56 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.56 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.55 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.55 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.55 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.54 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.54 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.54 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.54 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.54 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.54 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.54 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.54 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.54 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.54 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.53 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 97.53 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.53 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.52 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.52 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.52 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.51 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.51 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 97.51 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.5 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.49 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 97.47 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.47 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 97.47 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.47 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.46 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.46 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.46 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.45 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.44 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.44 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.43 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.43 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.43 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 97.43 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.42 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.41 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.41 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.41 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.41 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.41 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.4 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.4 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.39 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.39 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.39 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.37 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.36 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.36 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.36 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.35 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.34 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.33 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.32 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 97.32 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.32 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.31 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.31 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.31 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.3 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.3 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.3 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.29 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.29 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.28 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.28 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.28 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.28 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.28 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.26 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 97.26 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 97.26 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.25 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.23 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.23 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.23 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.23 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.22 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.22 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.22 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 97.21 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.21 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.2 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.2 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.2 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.2 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.19 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.19 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.19 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.18 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.18 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.17 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.17 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.17 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.16 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.16 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.16 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 97.15 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.14 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.14 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.13 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.12 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.12 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.09 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.09 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.09 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.09 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 97.09 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.08 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.07 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.07 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.06 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.05 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.05 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.05 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.04 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.04 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.03 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.02 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.02 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.02 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.01 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.01 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.01 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.0 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 97.0 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.0 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 96.99 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.99 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.99 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.98 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 96.98 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 96.97 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.97 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.96 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.95 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 96.95 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.95 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 96.94 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.94 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.94 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 96.93 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 96.93 |
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.55 E-value=1.5e-14 Score=122.11 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=75.6
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+..|+++.|.|.+.|.|.| .|+|+|||.++. ...++.+.. +.|.|.++..+|+|.|+|
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~--~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C 70 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLA--SQNRIEVSG--------GELRFSKLVLEDSGMYQC 70 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECC--CCSSEEEET--------TEEEESSCCGGGCEEEEE
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCC-EEEEEEeecccc--ccceeeeee--------eeEEEEeecccCCEEEEE
Confidence 4554 5678889999999999999999999 999999999997 445666643 589999999999999999
Q ss_pred EEEcCCCCeEEEEEEEec
Q psy17146 709 SVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~ 726 (1011)
.|+|.+|..+.++.|.|+
T Consensus 71 ~a~N~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 71 VAENKHGTVYASAELTVQ 88 (89)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEEE
Confidence 999999999999999885
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.54 E-value=2e-14 Score=125.25 Aligned_cols=92 Identities=23% Similarity=0.366 Sum_probs=79.4
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|.|. .+.+..+.+|+.+.|.|.+.|.|.| .|.|+|||.+|. .+.++.+... ....++|.|.++..+|+|.|+
T Consensus 8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~i~--~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~ 81 (102)
T d1fhga_ 8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVK--ESRHFQIDYD---EEGNCSLTISEVCGDDDAKYT 81 (102)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CSSSEEEEEC---TTCEEEEEESSCCGGGCEEEE
T ss_pred CCeEEcCCCcEEEecCCcEEEEEEEEeccCC-eEEEEeeecccc--ceeeEeEEEe---cCceeeeEecCCCHHhCEEEE
Confidence 56666 5577889999999999999999999 999999999998 4556666443 334678999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|+|.+|.++.++.|.|+
T Consensus 82 C~a~N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 82 CKAVNSLGEATCTAELLVE 100 (102)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEEEEEE
Confidence 9999999999999999885
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.54 E-value=2.1e-14 Score=124.14 Aligned_cols=93 Identities=23% Similarity=0.234 Sum_probs=78.0
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|.|. .+.+..+.+|+.++|.|.+.|.|.| .++|+|||.+|.. +.++.+... .+...+|.|.++..+|+|.|+
T Consensus 4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~i~~--~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~ 77 (98)
T d1g1ca_ 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIER--SDRIYWYWP---EDNVCELVIRDVTGEDSASIM 77 (98)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEEE---ETTEEEEEECSCCGGGCEEEE
T ss_pred CCeEecCCCcEEEcCCCcEEEEEEEEEecCC-eEEEEeCceEEee--eeeeEEEec---cceEEEEEeccCccccCEEEE
Confidence 56666 5577889999999999999999999 9999999999974 344443322 234578999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEecC
Q psy17146 708 CSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|.|+|.+|.++..+.|.|+.
T Consensus 78 c~a~N~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 78 VKAINIAGETSSHAFLLVQA 97 (98)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCcEEEEEEEEEEEE
Confidence 99999999999999999863
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.52 E-value=1.4e-14 Score=123.79 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=78.0
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|.|. .+.+..+.+|++++|.|.+.|.|.| .+.|++||..+.. ..++.+.. .+..+.|.|.++..+|+|.|+
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~i~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~ 74 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAAL--APELLVDA----KSSTTSIFFPSAKRADSGNYK 74 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSC-EEEEECSSSSCBC--STTSEEEE----ETTEEEEECTTBCGGGCEEEE
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCC-eEEEEeeeeecee--eeeeeecc----cccceeeccccccccccEEEE
Confidence 57776 4567889999999999999999999 9999999999874 44555544 334679999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|+|..|++++.+.|.|+
T Consensus 75 c~a~N~~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 75 LKVKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEETTEEEEEEEEEEEC
T ss_pred EEEEECCCEEEEEEEEEEC
Confidence 9999999999999999874
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.6e-14 Score=123.29 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=77.8
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+.+|+++.|.|.+.|.|.| .|.|+|||+.+. ...++.+.. ....+.|.|.++..+|+|.|+|
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~l~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C 73 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQ--ESEHMKVEN----SENGSKLTILAARQEHCGCYTL 73 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCC--CSSSEEEEE----CSSEEEEEETTCCTTTCEEEEE
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCC-EEEEEeCceeec--cCCcEEEEE----ecceeEEEEeeCCcccCEEEEE
Confidence 4444 4567889999999999999999999 999999999997 456666654 2335789999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecC
Q psy17146 709 SVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.+|.++.++.|.|.+
T Consensus 74 ~a~N~~G~~~~~~~l~V~~ 92 (101)
T d2cqva1 74 LVENKLGSRQAQVNLTVVD 92 (101)
T ss_dssp EEECSSCEEECCEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEe
Confidence 9999999999999999853
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.52 E-value=1.8e-14 Score=124.19 Aligned_cols=91 Identities=25% Similarity=0.384 Sum_probs=78.1
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+.+|+++.|.|.+.|.|.| .|+|++||+.|.. +.++.+.. .+....|.|.++..+|+|.|+|
T Consensus 2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~l~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C 74 (97)
T d1koaa1 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQ--SVKYMKRY----NGNDYGLTINRVKGDDKGEYTV 74 (97)
T ss_dssp CEEEECCCCCEEETTSCEEEEEEEECSSCC-EEEEEETTEECCS--BTTBBCCC----STTEEEEEESCCCSGGGSCEEE
T ss_pred CEEEEeCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEEeeeccce--eeEEEEEe----cCCeeEEEeCCCceecCEEEEE
Confidence 5665 5667889999999999999999999 9999999999974 45555543 3456789999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecC
Q psy17146 709 SVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.+|.++.++.|.|.+
T Consensus 75 ~a~N~~G~~~~~~~l~V~~ 93 (97)
T d1koaa1 75 RAKNSYGTKEEIVFLNVTR 93 (97)
T ss_dssp EEEETTEEEEEEECCEEEC
T ss_pred EEEECCCEEEEEEEEEEee
Confidence 9999999999999998854
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.49 E-value=5.5e-14 Score=118.65 Aligned_cols=85 Identities=21% Similarity=0.466 Sum_probs=72.2
Q ss_pred CCeee-cC-CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTII-SH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~-~~-~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+|.|. .+ ....+.+|+.+.|.|.+.|.|.| .|+|+|||.++. ..++.+.. ..|.|.++..+|+|.|
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~i~---~~~~~~~~--------~~L~i~~v~~~d~G~Y 69 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLS---GGRATVTD--------SGLVIKGVKNGDKGYY 69 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTEECC---SSSEEEET--------TEEEESSCCSTTCEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCccCc---cccEEEee--------eeEEECCCChhhCEEE
Confidence 46665 33 34568899999999999999999 899999999985 34566554 4699999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|.+|.++..+.|.|
T Consensus 70 ~C~a~N~~G~~~~~~~l~V 88 (89)
T d1biha4 70 GCRATNEHGDKYFETLVQV 88 (89)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEEEE
Confidence 9999999999999998887
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=7.7e-14 Score=121.02 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=74.0
Q ss_pred CCCeeecC-C--ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTIISH-R--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~~~-~--~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.||.|... . +.++..|++++|.|.+.|.|.| .|+|+++|..+............ ....+.|.|.++..+|+|
T Consensus 2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G 76 (100)
T d1qz1a3 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIF----SDDSSELTIRNVDKNDEA 76 (100)
T ss_dssp EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEE----CTTSCEEEECSCCGGGCE
T ss_pred cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCC-EEEEEeCCcccccccccceeEEe----ecCceEEEeCCCCcccCE
Confidence 36777743 2 3456789999999999999999 99999999998753322222111 122478999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEec
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.|+|.|+|.+|.++..+.|.|.
T Consensus 77 ~Y~C~a~N~~G~~~~~~~l~V~ 98 (100)
T d1qz1a3 77 EYVCIAENKAGEQDASIHLKVF 98 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEECCCEEEEEEEEEEE
Confidence 9999999999999999999884
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.46 E-value=2.6e-14 Score=121.49 Aligned_cols=86 Identities=29% Similarity=0.406 Sum_probs=74.6
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.|.+..+.+|+++.|.|.+.|.|.| .|.|++||.++.. ..++.+.. ....+.|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~P~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~l~~--~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 77 (91)
T d1tnna_ 5 KPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLST--SARHQVTT----TKYKSTFEISSVQASDEGNYSVVVENS 77 (91)
T ss_dssp CCCCEECSSSSCCCEEEECCCSSCC-CCEEESSSSTTCS--SSSCEEEE----CSSEEEEECSSCCSCCCEEEEEECBCS
T ss_pred CCcCEEEeCCCcEEEEEEEEEEeCC-eEEEEEeeccccc--ccceeeee----ecceeEEeecCCCHHHCEEEEEEEEEC
Confidence 5667889999999999999999999 8999999998874 44555444 334689999999999999999999999
Q ss_pred CCCeEEEEEEEec
Q psy17146 714 YGSDSVEIMLKPQ 726 (1011)
Q Consensus 714 ~G~~~~~~~l~V~ 726 (1011)
+|.++..+.|.|+
T Consensus 78 ~G~~~~~~~l~V~ 90 (91)
T d1tnna_ 78 EGKQEAEFTLTIQ 90 (91)
T ss_dssp SCBCCEEEEEECC
T ss_pred CCEEEEEEEEEEE
Confidence 9999999999885
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.2e-15 Score=131.67 Aligned_cols=104 Identities=34% Similarity=0.618 Sum_probs=89.1
Q ss_pred EEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC-
Q psy17146 624 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH- 702 (1011)
Q Consensus 624 l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d- 702 (1011)
|.|+.||.|..+....+.+|+.+.|.|.+.|.|++..+.|++++..+......++.+......++..+.|.|.++..+|
T Consensus 2 L~V~~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~ 81 (115)
T d2crya1 2 LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF 81 (115)
T ss_dssp CCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred eEEecCCEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence 6788999998777788999999999999999765438999999999987666777776655555666789999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.|+|.+|++++.+.|.|+.
T Consensus 82 ~G~Y~C~A~N~~G~~~~~~~L~V~~ 106 (115)
T d2crya1 82 QTIYNCTAWNSFGSDTEIIRLKEQG 106 (115)
T ss_dssp HSCEEEEEECSSCEEEEEECCCCSC
T ss_pred CeEEEEEEEECCCeEEEEEEEEEEC
Confidence 6999999999999999999999864
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4e-13 Score=116.52 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=80.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|+|...|+++++.+|++++|.|.+.+ +.+.+.|+|++..+. ..+|+.+.... +..+|.|.+++.+|+|.|+
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~------~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~ 72 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ------ESEHMKVENSE--NGSKLTILAARQEHCGCYT 72 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCC------CSSSEEEEECS--SEEEEEETTCCTTTCEEEE
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeec------cCCcEEEEEec--ceeEEEEeeCCcccCEEEE
Confidence 56888899999999999999999997 677999999997763 33567665543 4568999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCe
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPR 136 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~ 136 (1011)
|.+.|.. +..+..+.|.|.+.|.+|.
T Consensus 73 C~a~N~~----G~~~~~~~l~V~~~P~pP~ 98 (101)
T d2cqva1 73 LLVENKL----GSRQAQVNLTVVDKPDPPA 98 (101)
T ss_dssp EEEECSS----CEEECCEEEEEECSCSCCC
T ss_pred EEEEECC----CEEEEEEEEEEEecCCCcC
Confidence 9999863 4567889999999888764
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.43 E-value=9.1e-14 Score=119.60 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=68.2
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCC-CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD-DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..+..|+++.|.|.+.|.|.| .|.|+|||+++...... .+... ...++|.|.++..+|+|.|+|.|+|.+|.
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~l~~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKGNYTCVVENEYGS 87 (97)
T ss_dssp EEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEE------GGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred EEECCCCcEEEEEEEeEECCC-EEEEEECCEeccccCceeeEEEc------CCcEEEEECCCCcccCEEEEEEEEECCCE
Confidence 467899999999999999999 99999999999753322 12221 22468999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
++.++.|.|
T Consensus 88 ~~~~~~l~V 96 (97)
T d3dara1 88 INHTYHLDV 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999987
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.42 E-value=2.4e-13 Score=115.29 Aligned_cols=86 Identities=21% Similarity=0.395 Sum_probs=70.2
Q ss_pred CCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 628 GRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 628 ~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
.+|.|. .+.+..+.+|++++|.|.+.|.|.| .|.|+|++..... .+. ...+.|.|.++..+|+|.
T Consensus 3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~----~~~--------~~~~~L~I~~v~~~D~G~ 69 (91)
T d1cs6a3 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTS----KWL--------SSEPLLHIQNVDFEDEGT 69 (91)
T ss_dssp EEEEEEECCCSEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSC----CCS--------BSSSEEEECSCCGGGCEE
T ss_pred cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCC-EEEEEecccccce----Eee--------eeeeEEEeCCCCccCCEE
Confidence 356665 3467789999999999999999999 9999997754331 111 113689999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|+|.+|.++..+.|.|+
T Consensus 70 Y~C~a~N~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 70 YECEAENIKGRDTYQGRIIIH 90 (91)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEEEEEE
Confidence 999999999999999999874
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.9e-13 Score=116.19 Aligned_cols=95 Identities=25% Similarity=0.376 Sum_probs=75.6
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEe----cccCCCCeEEecCCcCccceeEEEEcCCC-CC
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----GVGSSDDYSVLEDPLKEGIKSTLIIRESR-HD 701 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l----~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~ 701 (1011)
+||.|. .+....+.+|+.++|.|.+.|.|.|..+.|+|++... ......++.+.. .+..+.|.|.++. ..
T Consensus 1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~~ 76 (101)
T d3b5ha1 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS----SQGRSELHIENLNMEA 76 (101)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE----ETTEEEEEECSCCTTT
T ss_pred CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe----CCCEEEEEEecccccc
Confidence 478887 4567789999999999999999988679999976332 222344555544 3456899999998 57
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|+|.|+|.+|+++..+.|.|+
T Consensus 77 D~G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 77 DPGQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEEEEECCCEEEEEEEEEEC
Confidence 9999999999999999999999873
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.41 E-value=3.2e-13 Score=116.19 Aligned_cols=94 Identities=26% Similarity=0.413 Sum_probs=77.0
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|.|..+|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .|+.+.. ..+.++|.|.+++.+|+|.|+
T Consensus 2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~------~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 73 (97)
T d1koaa1 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS------VKYMKRY--NGNDYGLTINRVKGDDKGEYT 73 (97)
T ss_dssp CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB------TTBBCCC--STTEEEEEESCCCSGGGSCEE
T ss_pred CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee------eEEEEEe--cCCeeEEEeCCCceecCEEEE
Confidence 78999999999999999999999997 67899999999887432 3555433 345678999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
|.|.|.. +..+..+.|+|...+.
T Consensus 74 C~a~N~~----G~~~~~~~l~V~~~~~ 96 (97)
T d1koaa1 74 VRAKNSY----GTKEEIVFLNVTRHSE 96 (97)
T ss_dssp EEEEETT----EEEEEEECCEEECSCC
T ss_pred EEEEECC----CEEEEEEEEEEeecCC
Confidence 9999963 4467778888876543
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.8e-13 Score=115.66 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=76.5
Q ss_pred EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G 704 (1011)
|+.||.|+.... ...+....|.|.+.|.|.| +|.|+|||+.|.. +.++.+.... ......+.|.|.+++.+|+|
T Consensus 1 v~~pP~it~~~~--~~~~~~~~i~~~v~G~P~P-~i~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 75 (103)
T d1wwbx_ 1 VHFAPTITFLES--PTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNE--SKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75 (103)
T ss_dssp CCCCCCCCCCCC--CCCCCEEEEEEEEECSSCC-EEEEEETTEEECC--CSSEEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred CccCCeeEEcCC--CccceeEEEEEEEEEeCCC-EEEEEECCEEeee--eeeeeeeecccccccceEEEEECCCCHHhCc
Confidence 467888874432 2467888999999999999 9999999999984 3333332211 11234578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.|+|.|+|.+|++++++.|.|.+.
T Consensus 76 ~Y~C~a~N~~G~~~~~~~v~V~~~ 99 (103)
T d1wwbx_ 76 DYTLIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp EEEEEEECSSCEEEEEEEECCSCC
T ss_pred eEEEEEeccCCEEEEEEEEEEEeC
Confidence 999999999999999999998654
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.41 E-value=3e-13 Score=113.92 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=73.5
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----cCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
.|.|...|.++.+.+|+++.|.|.+.|.|.|.++|+|+|..+.. ..+++|.|.++..+|+|.|+|.|.| ..|..
T Consensus 1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~ 79 (89)
T d1cs6a4 1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAEN-KHGTV 79 (89)
T ss_dssp EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEE-TTEEE
T ss_pred CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEe-CCCEE
Confidence 37899999999999999999999999999999999999855432 2357899999999999999999999 67888
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|+
T Consensus 80 ~~~~~l~V~ 88 (89)
T d1cs6a4 80 YASAELTVQ 88 (89)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888888885
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.8e-13 Score=116.92 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=74.4
Q ss_pred EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 626 LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 626 V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
|..||+|..... ...+....|.|.+.|.|.| .++|+|||++|..+ .++.+..........+.|.|.+++.+|+|.
T Consensus 2 V~~PP~i~~~~~--~~~~~~~~i~~~v~G~P~P-~v~W~~n~~~i~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (105)
T d1wwca_ 2 VYYPPRVVSLEE--PELRLEHCIEFVVRGNPPP-TLHWLHNGQPLRES--KIIHVEYYQEGEISEGCLLFNKPTHYNNGN 76 (105)
T ss_dssp CCCCCCCCCCCC--CCCCCEEEEEEEEECSSCC-EEEEEETTEECCCS--SSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred EEcCCeeEEeCC--CEEEEEEEEEEEEEEeCCC-eEEEEeCccccCCC--cceeeeEEeecccceEEEEEeecccccceE
Confidence 677888874322 2244566788999999999 99999999999753 333333222223446789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|+|.+|.+++++.|.|.
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~ 97 (105)
T d1wwca_ 77 YTLIAKNPLGTANQTINGHFL 97 (105)
T ss_dssp EEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEEcCCCEEEEEEEEEEE
Confidence 999999999999999999885
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.40 E-value=7e-13 Score=113.89 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=70.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+.+..+.+|+++.|.|.+.|.|.| .+.|+|+|+.+......++.... ....++|.|.+++.+|+|.|+|.|.|.+
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~-~v~W~k~g~~i~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 84 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHN----RTSGKRLLFKTTLPEDEGVYTCEVDNGV 84 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCC-CCEEEETTEECCCCTTSSEESCS----SSTTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred CCCEEEecCCeEEEEEEEEEecCC-EEEEEEeeeeccccceeeeeeee----ecCCCEEEEEeccccccEEEEEEEEECC
Confidence 357789999999999999999999 89999999999754444343222 2234689999999999999999999999
Q ss_pred CCe-EEEEEEEe
Q psy17146 715 GSD-SVEIMLKP 725 (1011)
Q Consensus 715 G~~-~~~~~l~V 725 (1011)
|.. +.++.|+|
T Consensus 85 G~~~s~s~~L~V 96 (97)
T d1biha3 85 GKPQKHSLKLTV 96 (97)
T ss_dssp SSCEEEEEEEEE
T ss_pred CcEEEEEEEEEE
Confidence 975 46788876
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.40 E-value=8.6e-13 Score=113.71 Aligned_cols=95 Identities=23% Similarity=0.181 Sum_probs=77.0
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
.++|.|...++++.+.+|++++|.|.+.+ |.+.+.|+|++..+... +++.+... ..+.++|+|.+++.+|+|
T Consensus 2 ~eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~------~~~~~~~~-~~~~~~L~I~~~~~~D~G 74 (98)
T d1g1ca_ 2 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS------DRIYWYWP-EDNVCELVIRDVTGEDSA 74 (98)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC------SSEEEEEE-ETTEEEEEECSCCGGGCE
T ss_pred CcCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeee------eeeEEEec-cceEEEEEeccCccccCE
Confidence 46799999999999999999999999997 78899999999887432 34433322 235679999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.|+|.+.|.. +..+..+.|.|..
T Consensus 75 ~Y~c~a~N~~----G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 75 SIMVKAINIA----GETSSHAFLLVQA 97 (98)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEEC
T ss_pred EEEEEEEECC----cEEEEEEEEEEEE
Confidence 9999999963 4567778888863
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.6e-13 Score=115.28 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=70.2
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
|.+..+.+|+.++|.|.+.|.|.| .+.|+|||..+... .++.+... .....+.|.|.+++.+|+|.|+|.|+|..
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~l~~~--~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 77 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNL--DQLYIPVS--EQHWIGFLSLKSVERSDAGRYWCQVEDGG 77 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSS--EEEEEEEE--TTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred CeeEEEcCCCeEEEEEEEEecCCc-eEEEEEeecccccc--eeeeeeec--ccCceeeEEECCCCcccCEEEEEEEEECC
Confidence 456779999999999999999999 99999999998743 33333221 13345789999999999999999999999
Q ss_pred CCe-EEEEEEEec
Q psy17146 715 GSD-SVEIMLKPQ 726 (1011)
Q Consensus 715 G~~-~~~~~l~V~ 726 (1011)
|.. +..+.|.|+
T Consensus 78 G~~~S~~~~l~V~ 90 (91)
T d1rhfa1 78 ETEISQPVWLTVE 90 (91)
T ss_dssp TCEECCCEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 975 567888774
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.4e-13 Score=111.40 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=71.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCC-ceeeEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFP-EVGAEA 622 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~ 622 (1011)
|.|...|.+..+.+|+++.|.|.+.|.|.| .++|+|||..+.....+.+.|.....+|+|.|+|.|.|. .| ..+..+
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~-~G~~~S~~~ 80 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNL-KGLASSRTA 80 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEET-TEEEECCCE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcC-CCcEEEEEE
Confidence 789999999999999999999999999998 899999998777666778889999999999999999994 45 456677
Q ss_pred EEEEc
Q psy17146 623 TVYLK 627 (1011)
Q Consensus 623 ~l~V~ 627 (1011)
.|.|+
T Consensus 81 ~v~Vk 85 (85)
T d1rhfa2 81 TVHLQ 85 (85)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77764
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=6.6e-13 Score=112.72 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=73.7
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.|. .|.++.+.+|+.+.|.|.+.|.|.| .++|+|+|..+......++....+ +.|.|.+++.+|+|.|+|
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C 73 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN-------NYLQIRGIKKTDEGTYRC 73 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTT-------SCEEETTCCGGGCEEEEE
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCC-eEEEEEcCcccccccceeeeeeee-------eeEEECCCCHHhCEEEEE
Confidence 3444 5677889999999999999999999 999999999998766666655442 479999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.|.|..|.......|.|
T Consensus 74 ~a~n~~~~~~~~~~i~V 90 (92)
T d1epfa2 74 EGRILARGEINFKDIQV 90 (92)
T ss_dssp EEEEGGGTEEEEEEEEE
T ss_pred EEEECcCCEEEEEEEEE
Confidence 99999988777666665
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.39 E-value=5.2e-13 Score=113.16 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=72.7
Q ss_pred ecceeec-CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce---eecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 543 YGPRFRA-RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK---VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 543 ~~P~~~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~---~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
++|.|.. .|.++.+.+|+.++|.|.+.|.|.|.+.|+|++... ....++.|.|.++..+|+|.|+|.|.| ..|..
T Consensus 3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~ 81 (91)
T d1cs6a3 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN-IKGRD 81 (91)
T ss_dssp EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEE-TTEEE
T ss_pred cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEE-CCCEE
Confidence 4677765 478999999999999999999999999999977543 234568999999999999999999999 67888
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|.
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1cs6a3 82 TYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888888874
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.9e-13 Score=109.87 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=73.1
Q ss_pred ceEeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 391 P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
|.|...|.+..+.+|+++.|.|.+.|.|.| +|+|+|++..+.......+.|.....+|+|.|+|.|.|..+...+..+.
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~ 81 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 81 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEE
Confidence 788999999999999999999999999998 8999999977666666788999999999999999999987777777777
Q ss_pred EEE
Q psy17146 470 VYL 472 (1011)
Q Consensus 470 v~v 472 (1011)
|.|
T Consensus 82 v~V 84 (85)
T d1rhfa2 82 VHL 84 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.3e-13 Score=122.37 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=75.2
Q ss_pred cCCCeee------cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC--------------------------
Q psy17146 627 KGRPTII------SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS-------------------------- 674 (1011)
Q Consensus 627 ~~~P~i~------~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~-------------------------- 674 (1011)
++||+|. .+....+.+|++++|.|.+.|.|.| .|.|++++..+....
T Consensus 2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T d1gxea_ 2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE 80 (130)
T ss_dssp CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS
T ss_pred CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeEccCCccceeeecccccccceeeecCCceeec
Confidence 4688874 2356779999999999999999999 999999887665321
Q ss_pred -CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 675 -SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 675 -~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..++.+.. ....+.|.|.++..+|+|.|+|.|+|.+|++++.+.|.|.
T Consensus 81 ~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 81 TEGRVRVET----TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp CSSSCEEEE----ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred cCceEEEEE----CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 11122221 2345789999999999999999999999999999999885
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.5e-12 Score=110.02 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=67.1
Q ss_pred cCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+....+.+|+++.|.|.+. +.|.| .|.|+|+|..+.. .+.... .+.|+|.++..+|+|.|+|.|+|
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~---~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N 75 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKLP---SRAMDF--------NGILTIRNVQPSDAGTYVCTGSN 75 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCCC---TTEEEE--------TTEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCeEEEeCCCcEEEEEEccCCCCCC-EEEEecCCceeec---cccEee--------ceEEEEecCCcccCEEEEEEEEE
Confidence 34567799999999999998 56778 9999999987753 222222 25899999999999999999999
Q ss_pred CCCCeEEEEEEEec
Q psy17146 713 PYGSDSVEIMLKPQ 726 (1011)
Q Consensus 713 ~~G~~~~~~~l~V~ 726 (1011)
.+|.++.++.|.|+
T Consensus 76 ~~G~~~~~~~l~V~ 89 (89)
T d1gl4b_ 76 MFAMDQGTATLHVQ 89 (89)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEC
Confidence 99999999999874
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.36 E-value=7.7e-13 Score=112.73 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=73.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
+|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .....|.|.++..+|+|.|+|.|.| .
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N-~ 80 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN-E 80 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE-T
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE-C
Confidence 68999999999999999999999999999999999999865432 2345899999999999999999999 6
Q ss_pred CCceeeEEEEEEc
Q psy17146 615 FPEVGAEATVYLK 627 (1011)
Q Consensus 615 ~~~~s~~~~l~V~ 627 (1011)
.|+.+..+.|.|+
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
Confidence 8888888888874
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.36 E-value=2.2e-12 Score=112.02 Aligned_cols=93 Identities=29% Similarity=0.391 Sum_probs=77.0
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ |.+.+.|+|++..+.. .+++.+... ..+.++|.|.+++.+|+|.
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~ 79 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE------SRHFQIDYD-EEGNCSLTISEVCGDDDAK 79 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC------SSSEEEEEC-TTCEEEEEESSCCGGGCEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccc------eeeEeEEEe-cCceeeeEecCCCHHhCEE
Confidence 3688999999999999999999999997 7789999999987743 346665443 3457799999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|+|.|.|.. +..+..+.|.|.
T Consensus 80 Y~C~a~N~~----G~~~~~~~L~V~ 100 (102)
T d1fhga_ 80 YTCKAVNSL----GEATCTAELLVE 100 (102)
T ss_dssp EEEEEEETT----EEEEEEEEEEEE
T ss_pred EEEEEEECC----cEEEEEEEEEEE
Confidence 999999963 456777888776
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.3e-13 Score=114.05 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=65.3
Q ss_pred CCeee---cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTII---SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~---~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|.|. .+.+..+.+|+.+.|.|.+.|.|.| +++|+|||..+.. .+.+.+++.+|+|.
T Consensus 2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~~~~-------------------~~~~~~v~~~d~G~ 61 (84)
T d2oz4a3 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLP-------------------IGESVTVTRDLEGT 61 (84)
T ss_dssp EEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECC-------------------TTSCEECCGGGCEE
T ss_pred CCceeecCCCccEEEeCCCEEEEEEEEeEcCcc-EEEEEEeecccee-------------------eeeeeccccCCCCE
Confidence 45664 2457789999999999999999999 9999999988752 12344577899999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|+|+|.+|+++..+.|.|.
T Consensus 62 Y~C~A~N~~G~~~~~~~l~V~ 82 (84)
T d2oz4a3 62 YLCRARSTQGEVTREVTVNVL 82 (84)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEEEEEE
Confidence 999999999999999999885
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1e-12 Score=109.33 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred eecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
|...++..+.+|++++|.|.+.|.|.| .|.|++++..+..+ ...|.|.++..+|+|.|+|.|.
T Consensus 3 it~~~~~~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~~~~~----------------~~~l~i~~v~~~DsG~Y~C~a~ 65 (84)
T d2nxyb2 3 LTANSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNIQG----------------GKTLSVSQLELQDSGTWTCTVL 65 (84)
T ss_dssp EEESCSSCEETTCCEEEEEECCTTCCC-EEEEECTTCCEEEE----------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred EcCCCCeEEECCCeEEEEEEeEcCCch-heEEEeecccceee----------------eeeeeeeecccccccEEEEEEE
Confidence 334455678999999999999999999 99999987655421 2579999999999999999999
Q ss_pred cCCCCeEEEEEEEecC
Q psy17146 712 NPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 712 N~~G~~~~~~~l~V~~ 727 (1011)
|..|..+..+.|.|..
T Consensus 66 N~~g~~~~~~~v~V~~ 81 (84)
T d2nxyb2 66 QNQKKVEFKIDIVVLA 81 (84)
T ss_dssp ETTEEEEEEEEECEEC
T ss_pred eCCCEEEEEEEEEEEe
Confidence 9999999999998853
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.34 E-value=6.7e-13 Score=113.48 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
.|.|. .+.+..+.+|+.++|.|.+.|.|.|..+.|++||+.+... ..++..... .++|.|.++..+|+|.|+
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~-~~~~~~~~~------~~~L~i~~v~~~D~G~Y~ 74 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ-EHNAALRKD------EGSLVFLRPQASDEGHYQ 74 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTT-TTTEEECTT------SCCEEESSCCGGGCEEEE
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeee-cceeeeccc------ceEEEEeccChhcCeEEE
Confidence 46776 4567889999999999999999987579999999998742 233333221 367999999999999999
Q ss_pred EEEEcCCCCeE-EEEEE
Q psy17146 708 CSVSNPYGSDS-VEIML 723 (1011)
Q Consensus 708 C~a~N~~G~~~-~~~~l 723 (1011)
|.|+|.+|... ..+.|
T Consensus 75 C~a~N~~G~~~s~~v~l 91 (94)
T d1biha1 75 CFAETPAGVASSRVISF 91 (94)
T ss_dssp EEEEETTEEEECCCEEE
T ss_pred EEEEeCCCEEEEEEEEE
Confidence 99999999653 44444
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.33 E-value=2.1e-12 Score=114.01 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCCeeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc----CCCCeEEecC---CcCccceeEEEEcCC
Q psy17146 628 GRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG----SSDDYSVLED---PLKEGIKSTLIIRES 698 (1011)
Q Consensus 628 ~~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~----~~~~~~~~~~---~~~~~~~~~L~I~~~ 698 (1011)
.+|.|.. |.+.++.+|++++|.|.+.|.|.| .|.|+|++...... .......... .......+.|.|.++
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 81 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 81 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence 4688873 578899999999999999999999 99999986543211 1111111100 011234578999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
..+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus 82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 82 TFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 999999999999999999999999987
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.33 E-value=1.6e-12 Score=109.42 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=69.7
Q ss_pred cceeecCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----ecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
+|.|...|. .+.+.+|+++.|.|.+.|.|.|.+.|+|++..+. ...+..|.|.++..+|+|.|+|+|.| ..|..
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~ 80 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATN-EHGDK 80 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEE-TTEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEE-CCCEE
Confidence 688887765 5678999999999999999999999999986542 12346799999999999999999999 67888
Q ss_pred eeEEEEEE
Q psy17146 619 GAEATVYL 626 (1011)
Q Consensus 619 s~~~~l~V 626 (1011)
+..+.|.|
T Consensus 81 ~~~~~l~V 88 (89)
T d1biha4 81 YFETLVQV 88 (89)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888877
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.3e-12 Score=111.33 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=74.3
Q ss_pred ecCCceeeecCCcEEEEEEEEecC---CCCeEEEEECCeEecc-cCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEE
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGV-GSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~g~~l~~-~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
..+.+..+..|++++|.|.+.|.| .| .|.|+|++..... ....++..... .......++|.|.+++.+|+|.|
T Consensus 9 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (110)
T d2avga1 9 MRPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGY 87 (110)
T ss_dssp ECCCCEEEETTSEEEEEEEEECCSCSSSC-EEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEE
T ss_pred ECCCeEEEECCCCEEEEEeecCCCCCCCC-EEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEE
Confidence 356778899999999999999999 46 8999998865433 23333433321 11223467899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecCC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+|.|+|..|.+++++.|.|++.
T Consensus 88 ~C~a~N~~G~~~~~~~L~V~~~ 109 (110)
T d2avga1 88 RCEVSTKDKFDCSNFNLTVHEA 109 (110)
T ss_dssp EEEEEETTEEEEEEEEEEEESC
T ss_pred EEEEEECCCeEEEEEEEEEEec
Confidence 9999999999999999999753
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.1e-13 Score=114.92 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE-EE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG-VY 706 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y 706 (1011)
.|.|. .+.+..+.+|+.+.|.|.+.|.|.| .|+|+++|..+...... . .......|.|.++..+|.| .|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~-~-------~~~~~~~L~i~~~~~~d~G~~Y 72 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATVMK-S-------GGLPSLGLTLANVTSDLNRKNV 72 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEECC-C-------CCSSEEEEEEESCCSTTTTCCE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCc-EEEEEECCceeeeeeee-e-------eeccceeEEEccccccccceEE
Confidence 46666 5667889999999999999999999 89999999877532111 1 1233578999999999999 69
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|.+|+++.++.|.|
T Consensus 73 ~C~a~N~~G~~~~s~~l~V 91 (92)
T d2ifga1 73 TCWAENDVGRAEVSVQVNV 91 (92)
T ss_dssp EECCEETTEECCEEECCCC
T ss_pred EEEEEcCCCEEEEEEEEEE
Confidence 9999999999999988876
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.7e-12 Score=108.48 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=66.8
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|+.+.|.|.+.|.|.| .++|++++..+.. ..... ....+.|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~---~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g 78 (90)
T d1vcaa2 9 SRYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN---GKVTN------EGTTSTLTMNPVSFGNEHSYLCTATCESR 78 (90)
T ss_dssp SEEEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS---SEEEE------ETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred CcEEEECCCEEEEEEeccCCCCc-eEEEEecCcccee---eeeee------ecCCcEEEEecccccccceEEEEEEeCCC
Confidence 34457789999999999999999 9999998876542 11111 22357999999999999999999999999
Q ss_pred CeEEEEEEEec
Q psy17146 716 SDSVEIMLKPQ 726 (1011)
Q Consensus 716 ~~~~~~~l~V~ 726 (1011)
..+.++.|.|.
T Consensus 79 ~~~~~~~v~V~ 89 (90)
T d1vcaa2 79 KLEKGIQVEIY 89 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 99999999873
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.31 E-value=1.7e-12 Score=111.60 Aligned_cols=87 Identities=23% Similarity=0.454 Sum_probs=68.1
Q ss_pred CCeee-cCCceeeecC---CcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 629 RPTII-SHRTQFGIPG---DTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G---~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+|.|. .+.+..+.+| ++++|.|.+.|.|.| .++|++||..+......++.... ...|.|..+..+|+|
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p-~v~W~~ng~~i~~~~~~~~~~~~-------~~~l~i~~~~~~d~G 75 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVA-------GDLVISNPVKAKDAG 75 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEET-------TEEEEESCCHHHHCE
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCC-EEEEEEeeeeccCCCCceEEeee-------eeEEEEecccccCCE
Confidence 46665 4555555554 789999999999999 99999999999865555444432 267889999999999
Q ss_pred EEEEEEEcCCCCe-EEEEEE
Q psy17146 705 VYNCSVSNPYGSD-SVEIML 723 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~-~~~~~l 723 (1011)
.|+|.|+|.+|.. +..+.|
T Consensus 76 ~Y~C~a~N~~G~~~S~~a~L 95 (97)
T d1cs6a1 76 SYQCVATNARGTVVSREASL 95 (97)
T ss_dssp EEEEEEEETTEEEECCCEEE
T ss_pred EEEEEEEECCCEEEEEEEEE
Confidence 9999999999975 445655
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.4e-12 Score=107.00 Aligned_cols=87 Identities=25% Similarity=0.314 Sum_probs=69.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
|+.+++++.+.+|++++|.|.+..+.+.+.|+|++..+.... ..++.+..+ .+.++|+|.+++.+|+|.|+|.|
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a 76 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGP----KSRYRIRVE--GKKHILIIEGATKADAAEYSVMT 76 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCST----TCSEEEEEE--TTEEEEEEEEECTTTCSEEEEEE
T ss_pred EEcCCCCEEEeCCCcEEEEEEECCCCceEEEEEeecccCCCC----CccEEEEEe--CCccEEEECccccccCEEEEEEE
Confidence 667889999999999999999988888999999998764321 234555443 36779999999999999999999
Q ss_pred EeCCCCCcceeeeEEEEEEEc
Q psy17146 110 STGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.| .+..+.|+|..
T Consensus 77 ~n--------~~~~a~l~V~~ 89 (90)
T d1x44a1 77 TG--------GQSSAKLSVDL 89 (90)
T ss_dssp TT--------EEEEEEEEEEC
T ss_pred ec--------ceEEEEEEEEE
Confidence 66 24567888864
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.8e-12 Score=112.30 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=72.8
Q ss_pred cCCceeeecCCcEEEEEEEEecC---CCCeEEEEECCeEecc-cCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGV-GSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~g~~l~~-~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
.+.+..+.+|++++|.|.+.|.| .| .|.|+|++..... ....++.+... .......+.|.|.+++.+|+|.|+
T Consensus 6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (113)
T d2dava1 6 KPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR 84 (113)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred CCceEEEeCCCEEEEEEEEccCCCCCCC-EEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence 46678899999999999999998 47 8999998754332 23344443321 122334678999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEecC
Q psy17146 708 CSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|.|+|..|..++.+.|.|.+
T Consensus 85 C~a~N~~G~~~~~~~L~V~~ 104 (113)
T d2dava1 85 CEVTYKDKFDSCSFDLEVHE 104 (113)
T ss_dssp EEEECSSCEEEECCEEEEEC
T ss_pred EEEEeCCCEEEEEEEEEEEc
Confidence 99999999999999999854
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=9.8e-13 Score=108.62 Aligned_cols=82 Identities=27% Similarity=0.421 Sum_probs=68.8
Q ss_pred ecceee--cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceee
Q psy17146 543 YGPRFR--ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620 (1011)
Q Consensus 543 ~~P~~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 620 (1011)
++|+|. ..|.++.+.+|+.+.|.|.+.|.|.|.++|+|++..+.. .+.+.+++.+|+|.|+|+|.| ..|+.+.
T Consensus 1 Y~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~----~~~~~~v~~~d~G~Y~C~A~N-~~G~~~~ 75 (84)
T d2oz4a3 1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----IGESVTVTRDLEGTYLCRARS-TQGEVTR 75 (84)
T ss_dssp EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC----TTSCEECCGGGCEEEEEEEEE-TTEEEEE
T ss_pred CCCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee----eeeeeccccCCCCEEEEEEEc-CCCEEEE
Confidence 357774 447889999999999999999999999999999865532 234667899999999999999 6788899
Q ss_pred EEEEEEcCC
Q psy17146 621 EATVYLKGR 629 (1011)
Q Consensus 621 ~~~l~V~~~ 629 (1011)
.+.|.|..|
T Consensus 76 ~~~l~V~~P 84 (84)
T d2oz4a3 76 EVTVNVLSP 84 (84)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999998764
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=8.4e-12 Score=107.10 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=69.1
Q ss_pred cCCceeeecCCcEEEEEEEEecCC-CCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
.|....+..|+++.|.|.+.|.|+ | .|.|++ +|..+.. ...++.+... ....++|.|.++..+|+|.|+|.|+
T Consensus 6 ~P~~~~v~~G~~~~l~C~v~g~p~~~-~v~W~~~~g~~~~~-~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~ 80 (97)
T d1epfa1 6 VPSQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEKLSP-NQQRISVVWN---DDDSSTLTIYNANIDDAGIYKCVVT 80 (97)
T ss_dssp ESSSEEEETTCCEEEEEEECCCSCCC-EEEEECTTSCEECC-BSSSEEEEEE---ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred ECCCEEEccCCcEEEEEEEEeccCCC-EEEEEEeeeeeeee-ccccEEEEee---cCcceEEEcccCchhhceEEEEEEE
Confidence 345677899999999999999986 6 999999 5565553 4456665543 3346799999999999999999999
Q ss_pred cCCCCe-EEEEEEEe
Q psy17146 712 NPYGSD-SVEIMLKP 725 (1011)
Q Consensus 712 N~~G~~-~~~~~l~V 725 (1011)
|..|.. ++++.|.|
T Consensus 81 N~~G~~~~~tv~l~V 95 (97)
T d1epfa1 81 AEDGTQSEATVNVKI 95 (97)
T ss_dssp ETTTEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEE
Confidence 999964 56777776
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.28 E-value=3.9e-12 Score=106.49 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=63.8
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
++...+.+|++++|.|.+.+.+++..+.|+|||+.+.... ....|.|.++..+|+|.|+|.|.|..
T Consensus 7 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------------~~~~l~i~~v~~~dsG~Y~C~a~n~~ 72 (88)
T d2fcba2 7 TPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------------SDPNFSIPQANHSHSGDYHCTGNIGY 72 (88)
T ss_dssp CSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------------SCCEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------------cccccccCccCHHHCCeEEEEEEeCC
Confidence 3445688999999999998665544899999999886321 13689999999999999999999999
Q ss_pred CCe-EEEEEEEecC
Q psy17146 715 GSD-SVEIMLKPQK 727 (1011)
Q Consensus 715 G~~-~~~~~l~V~~ 727 (1011)
|.. +..+.|.|+.
T Consensus 73 g~~~S~~v~l~V~~ 86 (88)
T d2fcba2 73 TLYSSKPVTITVQA 86 (88)
T ss_dssp EEEECCCEEEEECC
T ss_pred CCEEeeeEEEEEeC
Confidence 965 5678888864
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=7.8e-12 Score=108.04 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=71.2
Q ss_pred ecceeecCCce--EEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------ecCCCcEEEeecCCCCCEEEEEE
Q psy17146 543 YGPRFRARPYS--VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------VGNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 543 ~~P~~~~~p~~--~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------~~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.||.|...+.. ..+..|+++.|.|.+.|.|.|.+.|+|+|..+. ....+.|.|.++..+|+|.|+|.
T Consensus 2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (100)
T d1qz1a3 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 81 (100)
T ss_dssp EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence 47888766654 567889999999999999999999999885432 23457899999999999999999
Q ss_pred EEecCCCceeeEEEEEEcC
Q psy17146 610 ASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~ 628 (1011)
|.| ..|..+..+.|.|..
T Consensus 82 a~N-~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 82 AEN-KAGEQDASIHLKVFA 99 (100)
T ss_dssp EEE-TTEEEEEEEEEEEEC
T ss_pred EEE-CCCEEEEEEEEEEEE
Confidence 999 678888899998864
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.7e-12 Score=109.17 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEE-ECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWS-YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
.|.|....+..+.+|++++|.|.+.|.|.| .+.|+ ++.............+.. ....++|.|.++..+|+|.|+
T Consensus 2 ~P~f~~~~~~~v~~G~~v~l~C~~~g~p~p-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~ 76 (96)
T d2c9aa1 2 TPHFLRIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSS----RRFIASFNVVNTTKRDAGKYR 76 (96)
T ss_dssp SCEECCCCCEEECSSSCEEEEEEEESCCCS-SCEEEEEETTBCCCCEEEEEEEET----TEEEEEEEECSCCGGGCSEEE
T ss_pred cCeecccCCEEEeCCCEEEEEEEEeecCCC-cEEEEEeeeeeeeecCCceeEEEe----ecCceEEEECCCCHHHCeEEE
Confidence 578887788999999999999999999988 44433 322222111112222222 334578999999999999999
Q ss_pred EEEEcCCCCe-EEEEEEEec
Q psy17146 708 CSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~-~~~~~l~V~ 726 (1011)
|.|.|..|+. +..+.|.|+
T Consensus 77 C~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 77 CMIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEeCCCeEEEEEEEEEEC
Confidence 9999999986 455788773
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.5e-11 Score=103.16 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=71.7
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDVTY 389 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~ 389 (1011)
+...+.+|+.++|.|.+.+.+++..+.|||||+.+........|.|.+++.+ |+|.|+|+|.|..|.. +..+.|+|.+
T Consensus 8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~-dsG~Y~C~a~n~~~~~~S~~v~i~V~~ 86 (89)
T d1f2qa2 8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVIK 86 (89)
T ss_dssp SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGG-GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeee-cCcEEEEEEEeCCCCeEeeeEEEEEEe
Confidence 4567899999999999988877789999999999987777889999999998 9999999999988764 5788999998
Q ss_pred cce
Q psy17146 390 GPR 392 (1011)
Q Consensus 390 ~P~ 392 (1011)
+|+
T Consensus 87 ~Pr 89 (89)
T d1f2qa2 87 APR 89 (89)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.7e-11 Score=107.39 Aligned_cols=96 Identities=22% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCeeecCC--ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEE---ecCCcC---ccceeEEEEcCCCC
Q psy17146 629 RPTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV---LEDPLK---EGIKSTLIIRESRH 700 (1011)
Q Consensus 629 ~P~i~~~~--~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~---~~~~~~---~~~~~~L~I~~~~~ 700 (1011)
+|.|..+. ...+..|+++.|.|.+.|.|.| .|.|++||..+.......... ...... ....+.|.|.+++.
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 79 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 79 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEEEECTTC-EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEeccCCCC-eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence 36666443 3447789999999999999999 999999999987533221111 111111 11356899999999
Q ss_pred CCCE-EEEEEEEcCCCCeEEEEEEEe
Q psy17146 701 DHFG-VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 701 ~d~G-~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.| .|+|.|+|.+|.+++.+.|..
T Consensus 80 ~D~g~~Y~C~A~N~~G~~~~~i~L~~ 105 (107)
T d1iray3 80 RFYKHPFTCFAKNTHGIDAAYIQLIY 105 (107)
T ss_dssp GGGSSCEEEEEECSSCEEEEEEEEEC
T ss_pred HHCCcEEEEEEEeCCCeEEEEEEEEC
Confidence 9999 599999999999999998863
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.4e-11 Score=103.43 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCeeecCC-ceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTIISHR-TQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~~~~-~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
|+.|..+. ...+.+|+++.|.|.+. |.|.| .|+|++++.++.. ... ....+.|.|.+++.+|+|.|
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~~~~-----~~~------~~~~~~L~i~~v~~~D~G~Y 70 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGA-SVQWRGLDTSLGA-----VQS------DTGRSVLTVRNASLSAAGTR 70 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTC-EEEEESSTTTTCC-----EEE------ESSEEEEEECSCCGGGCEEE
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeeeeee-----eec------cCceeeEEcCccChhhCCcE
Confidence 34444443 46688999999999885 78888 9999998766531 111 22358999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|+|.|..|+.+.++.|.|
T Consensus 71 ~C~Asn~~g~~~~s~~l~V 89 (90)
T d1gsma1 71 VCVGSCGGRTFQHTVQLLV 89 (90)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCCcEEEEEEEEE
Confidence 9999999999999999876
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.4e-12 Score=109.92 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=68.3
Q ss_pred cCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+....+..|+++.|.|.+.|.|. | .|+|+|++..+............. ........|.|.++..+|+|.|+|.|+|
T Consensus 9 ~~~~~~v~~G~~v~L~C~v~g~p~~P-~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 86 (104)
T d2aw2a1 9 RQSEHSILAGDPFELECPVKYCANRP-HVTWCKLNGTTCVKLEDRQTSWKE-EKNISFFILHFEPVLPNDNGSYRCSANF 86 (104)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCC-EEEEEEECSSCEEECCSSCEEEEE-CSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCeEEEeCCCeEEEEEEEEeeCCCC-EEEEEecCcccccccceeeeeEEe-cCCceEEEEEEccccHHHCCeEEEEEEc
Confidence 445677999999999999999995 8 999999987765433322222111 1122356799999999999999999999
Q ss_pred CCCCe-EEEEEEEec
Q psy17146 713 PYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 713 ~~G~~-~~~~~l~V~ 726 (1011)
..|.. +.++.|.|.
T Consensus 87 ~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 87 QSNLIESHSTTLYVT 101 (104)
T ss_dssp TTEEEECCCEEEEEE
T ss_pred CCCeEEEEEEEEEEE
Confidence 99975 457777774
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1e-11 Score=108.42 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=66.5
Q ss_pred eeeecCCcEE---EEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc-CccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 638 QFGIPGDTAR---VECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL-KEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 638 ~~v~~G~~v~---L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
..+..|.... |.|.+.|.|.| .+.|+|||++|..+......+..... .....+.|.|.++..+|+|.|+|.|+|.
T Consensus 7 ~~~~~g~~~~~~ci~~~v~G~P~P-~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 7 VQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred eEECCCeEEEEEEEEEEEEEecCC-eEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 3344444444 55689999999 99999999999853333333322211 1224578999999999999999999999
Q ss_pred CCCeEEEEEEEecC
Q psy17146 714 YGSDSVEIMLKPQK 727 (1011)
Q Consensus 714 ~G~~~~~~~l~V~~ 727 (1011)
+|.+++++.|.|.+
T Consensus 86 ~G~~~~~i~v~v~~ 99 (107)
T d1he7a_ 86 FGQASASIMAAFMD 99 (107)
T ss_dssp TEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEEEc
Confidence 99999999998854
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=1.2e-11 Score=104.72 Aligned_cols=81 Identities=20% Similarity=0.366 Sum_probs=66.7
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce--------eecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK--------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
+.|...|.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+ ....+++|.|.++..+|+|.|+|.|.|. .+
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-~~ 80 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL-AR 80 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEG-GG
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEEC-cC
Confidence 56888899999999999999999999999999999998543 3345578999999999999999999993 34
Q ss_pred ceeeEEEEEE
Q psy17146 617 EVGAEATVYL 626 (1011)
Q Consensus 617 ~~s~~~~l~V 626 (1011)
.......|.|
T Consensus 81 ~~~~~~~i~V 90 (92)
T d1epfa2 81 GEINFKDIQV 90 (92)
T ss_dssp TEEEEEEEEE
T ss_pred CEEEEEEEEE
Confidence 4444444444
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.7e-11 Score=103.33 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=68.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCcee----ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
+...|.++.+.+|+++.|.|.+. +.|.+.+.|+|++..+. ...++.|+|.++..+|+|.|+|.|.| ..|..+..
T Consensus 5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~ 83 (89)
T d1gl4b_ 5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSN-MFAMDQGT 83 (89)
T ss_dssp EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEEC-SSCEEEEE
T ss_pred EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEE-CCCEEEEE
Confidence 34467789999999999999997 67889999999986543 23467999999999999999999999 67788888
Q ss_pred EEEEEc
Q psy17146 622 ATVYLK 627 (1011)
Q Consensus 622 ~~l~V~ 627 (1011)
+.|.|+
T Consensus 84 ~~l~V~ 89 (89)
T d1gl4b_ 84 ATLHVQ 89 (89)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888874
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.24 E-value=3e-12 Score=108.39 Aligned_cols=84 Identities=14% Similarity=0.300 Sum_probs=67.7
Q ss_pred ecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
..+..+.+.+|+.+.|.|. +.|.|.|.+.|+|++..+..+.++....... .++|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~v~~G~~~~l~C~-~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~N 76 (91)
T d1tnna_ 4 TKPRSMTVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVTTTKY------KSTFEISSVQASDEGNYSVVVEN 76 (91)
T ss_dssp BCCCCEECSSSSCCCEEEE-CCCSSCCCCEEESSSSTTCSSSSCEEEECSS------EEEEECSSCCSCCCEEEEEECBC
T ss_pred eCCcCEEEeCCCcEEEEEE-EEEEeCCeEEEEEeecccccccceeeeeecc------eeEEeecCCCHHHCEEEEEEEEE
Confidence 3455788999999999999 7899999999999998887765544333322 36899999999999999999999
Q ss_pred CCCCceeEEEE
Q psy17146 218 TADRTYKVARL 228 (1011)
Q Consensus 218 ~~g~~~~s~~v 228 (1011)
..|....+..+
T Consensus 77 ~~G~~~~~~~l 87 (91)
T d1tnna_ 77 SEGKQEAEFTL 87 (91)
T ss_dssp SSCBCCEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99987544433
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.23 E-value=8e-12 Score=107.11 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=63.5
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
.+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+. ....++|.|.++..+|+|.|+|.|.| ..|..+..+
T Consensus 14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~ 92 (97)
T d3dara1 14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN-EYGSINHTY 92 (97)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEE-TTEEEEEEE
T ss_pred cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEE-CCCEEEEEE
Confidence 4678899999999999999999999999985542 23347899999999999999999999 678888888
Q ss_pred EEEE
Q psy17146 623 TVYL 626 (1011)
Q Consensus 623 ~l~V 626 (1011)
.|.|
T Consensus 93 ~l~V 96 (97)
T d3dara1 93 HLDV 96 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.3e-11 Score=105.29 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=74.1
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-CCCc
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-DDDA 103 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~D~G 103 (1011)
||.|...+.++.+.+|++|+|.|.+.+ |.+ .+.|+|++.............|+.+.... ...+|.|.+++. +|+|
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~~D~G 79 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ--GRSELHIENLNMEADPG 79 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET--TEEEEEECSCCTTTSSE
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC--CEEEEEEeccccccCCE
Confidence 789999999999999999999999997 555 79999987554333333334567666543 567899999984 7999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
.|+|.|.|.. +..+..+.|.|
T Consensus 80 ~Y~C~A~N~~----G~~~~~~~L~V 100 (101)
T d3b5ha1 80 QYRCNGTSSK----GSDQAIITLRV 100 (101)
T ss_dssp EEEEEEEETT----EEEEEEEEEEE
T ss_pred EEEEEEEECC----CEEEEEEEEEE
Confidence 9999999963 45666677766
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.6e-12 Score=105.36 Aligned_cols=88 Identities=30% Similarity=0.314 Sum_probs=69.6
Q ss_pred cCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
.|.++++.+|++++|.|.+.+ +.+.+.|+|++..+.. .++..+..........|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 75 (91)
T d1rhfa1 2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 75 (91)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCS------SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeeccccc------ceeeeeeecccCceeeEEECCCCcccCEEEEEEEEE
Confidence 378899999999999999997 6779999999987643 244455544555667899999999999999999998
Q ss_pred CCCCCcceeeeEEEEEEE
Q psy17146 112 GILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V~ 129 (1011)
..+ ...|..+.|+|.
T Consensus 76 ~~G---~~~S~~~~l~V~ 90 (91)
T d1rhfa1 76 GGE---TEISQPVWLTVE 90 (91)
T ss_dssp CTT---CEECCCEEEEEE
T ss_pred CCC---CEEEEEEEEEEE
Confidence 643 234667888775
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.23 E-value=9.2e-12 Score=104.37 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
++...+.+|++++|.|.+.+.+++..+.|+|||+.+... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~--------------~~~~~l~I~~v~~~dsG~Y~C~a~n~~ 74 (89)
T d1fnla2 9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------------HHNSDFHIPKATLKDSGSYFCRGLVGS 74 (89)
T ss_dssp CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------------EECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee--------------ccccccEECccceeccceEEEEEEeCC
Confidence 344568899999999999866554489999999987631 113589999999999999999999999
Q ss_pred CCe-EEEEEEEecC
Q psy17146 715 GSD-SVEIMLKPQK 727 (1011)
Q Consensus 715 G~~-~~~~~l~V~~ 727 (1011)
|.. +..+.|+|++
T Consensus 75 ~~~~S~~v~itV~E 88 (89)
T d1fnla2 75 KNVSSETVNITITQ 88 (89)
T ss_dssp EEEECCCEEEEEEC
T ss_pred CCeEEeeEEEEEEe
Confidence 964 4677887754
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.2e-11 Score=105.96 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=69.9
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|. ..+..+.+|++++|+|.+.+ +.+ .+.|+++|+.+. ...++.+... .++|.|.++..+|.|.|+|
T Consensus 5 ~P~i~-~~~~~v~~g~~v~l~C~~~~-~~~-~v~W~~~~~~l~--~~~~~~~~~~------~~~L~I~~v~~~d~G~Y~C 73 (96)
T d1l6za2 5 QPFLQ-VTNTTVKELDSVTLTCLSND-IGA-NIQWLFNSQSLQ--LTERMTLSQN------NSILRIDPIKREDAGEYQC 73 (96)
T ss_dssp CCCEE-CSCSEECTTSCEEEEECCCC-SSC-EEEEEETTEECC--CCTTEEEETT------TTEEEECSCCGGGCEEEEE
T ss_pred CCeEE-cCceEEeCCCeEEEEEccCC-CCC-CEEEEEeeeecc--cccceeccCC------ceEEEEeccchhhceEEEE
Confidence 35554 35567899999999999866 456 899999999997 4456665442 3689999999999999999
Q ss_pred EEEcCCCCe-EEEEEEEecC
Q psy17146 709 SVSNPYGSD-SVEIMLKPQK 727 (1011)
Q Consensus 709 ~a~N~~G~~-~~~~~l~V~~ 727 (1011)
.|.|.+|.. +..+.|.|..
T Consensus 74 ~a~N~~g~~~S~~~~L~V~~ 93 (96)
T d1l6za2 74 EISNPVSVRRSNSIKLDIIF 93 (96)
T ss_dssp EEESSSCCEECCCCEEEECC
T ss_pred EEEeCCCCeEEEeEEEEEEc
Confidence 999999976 4568888753
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.2e-11 Score=109.72 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=72.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC-C---CCeeEEeeCCeecCCcccCCCCcceEE----eecCCCceeEEEEeecccC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID-K---TGVLQWTKDDFALGPHRNLSGFDRYAM----IGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~-~---~~~v~W~k~~~~l~~~~~~~~~~r~~i----~~~~~~~~~~L~I~~v~~~ 100 (1011)
.|..+|+++++.+|++|+|.|.+.+ | .+.+.|+|++....... ...++.+ ......+.++|.|.+++.+
T Consensus 2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 78 (113)
T d2dava1 2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK---AGKHLQLKETFERHSRVYTFEMQIIKAKDN 78 (113)
T ss_dssp SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH---TTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccc---cceeeeeccceeeEeecCEEEEEEccCCHH
Confidence 3788999999999999999999997 3 46899999874331111 1112221 1222345668999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
|+|.|+|.|.|.. +..+..+.|+|..++.
T Consensus 79 D~G~Y~C~a~N~~----G~~~~~~~L~V~~~~~ 107 (113)
T d2dava1 79 FAGNYRCEVTYKD----KFDSCSFDLEVHESTG 107 (113)
T ss_dssp SCEEEEEEEECSS----CEEEECCEEEEECCCC
T ss_pred HCeEEEEEEEeCC----CEEEEEEEEEEEcCCC
Confidence 9999999999863 4567788999986653
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.1e-11 Score=102.99 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=70.5
Q ss_pred EEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEE
Q psy17146 307 VSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD 386 (1011)
Q Consensus 307 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~ 386 (1011)
+...++..+.+|++++|.|.+.+.|.| .+.|++++..+.. ....|.|.++..+ |+|.|+|.|.|..|..+..+.|.
T Consensus 3 it~~~~~~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~~~~--~~~~l~i~~v~~~-DsG~Y~C~a~N~~g~~~~~~~v~ 78 (84)
T d2nxyb2 3 LTANSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNIQ--GGKTLSVSQLELQ-DSGTWTCTVLQNQKKVEFKIDIV 78 (84)
T ss_dssp EEESCSSCEETTCCEEEEEECCTTCCC-EEEEECTTCCEEE--ESSEEEESSCCGG-GCEEEEEEEEETTEEEEEEEEEC
T ss_pred EcCCCCeEEECCCeEEEEEEeEcCCch-heEEEeeccccee--eeeeeeeeecccc-cccEEEEEEEeCCCEEEEEEEEE
Confidence 445567789999999999999999987 9999998876543 4568999999998 99999999999999999999999
Q ss_pred EEecc
Q psy17146 387 VTYGP 391 (1011)
Q Consensus 387 V~~~P 391 (1011)
|...|
T Consensus 79 V~~~~ 83 (84)
T d2nxyb2 79 VLAFQ 83 (84)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 88655
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=5.7e-12 Score=111.23 Aligned_cols=104 Identities=20% Similarity=0.350 Sum_probs=74.6
Q ss_pred cCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCce--EEEEEEEEEeeccCcC
Q psy17146 130 VPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRR--TTVKSTLVLTPKKEHH 207 (1011)
Q Consensus 130 ~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~d 207 (1011)
+||..|.+..+. .+.+|+++.|.|.+..|+|.+.++|+|++..+................ ....+.|.|.+++.+|
T Consensus 1 VPP~~p~~~~~~--~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D 78 (110)
T d1f97a2 1 VPPSKPTISVPS--SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 78 (110)
T ss_dssp BCCCCCEEECCS--EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGG
T ss_pred CCCccceeCCCC--EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccC
Confidence 366777776544 467899999999966789999999999998876543332222211111 1112479999999999
Q ss_pred CcEEEEEEEeCCCCceeEEEEEEEEEeC
Q psy17146 208 NTTFTCQAQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 208 ~G~Y~C~a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
+|.|+|.|.|..|....+..++|+|...
T Consensus 79 ~G~Y~C~a~N~~G~~~~s~~v~l~V~~l 106 (110)
T d1f97a2 79 SGEYYCQAQNGYGTAMRSEAAHMDAVEL 106 (110)
T ss_dssp CEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred CEEEEEEEEECCCcEEEEEEEEEEEEec
Confidence 9999999999999887777888887643
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.3e-11 Score=104.87 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=70.1
Q ss_pred eccceeecCCc-eeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQD-QTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~-~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
++|.|...+.+ ..|.+|+++.|.|.+.++.+.+.|+|++..+... ..++.+..+ .+.++|.|.+++.+|+|.
T Consensus 4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~~~-----~~~~~~~~~--~~~~~L~I~~~~~~D~G~ 76 (94)
T d1pd6a_ 4 KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMS-----GSKYIFESI--GAKRTLTISQCSLADDAA 76 (94)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEECSSSSSCCEEEESSSEECCC-----SSSSEEEEE--TTEEEEEECSCSSSSCEE
T ss_pred CCCcEEEeCCCCEEECcCCeEEEEEEECCCCceEEEEEcCccceee-----eeeEeeecc--CCeEEeecCCCCceecEE
Confidence 46778887764 5799999999999998888899999999887432 235555544 367799999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|+|.|.| .+..+.|+|.
T Consensus 77 Y~c~a~n--------~~~s~~l~V~ 93 (94)
T d1pd6a_ 77 YQCVVGG--------EKCSTELFVK 93 (94)
T ss_dssp EEEEETT--------EEECCEEEEE
T ss_pred EEEEEee--------EEEEEEEEEE
Confidence 9999965 2445677775
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.6e-11 Score=101.76 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=66.7
Q ss_pred ceeecC-CceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCce----eecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 545 PRFRAR-PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDK----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 545 P~~~~~-p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
|.+... +....+.+|+++.|.|.+. |.|.+.++|++.+... .....+.|+|.+++.+|+|.|+|+|.| +.+..
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn-~~g~~ 81 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSC-GGRTF 81 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEE-TTEEE
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEe-CCCcE
Confidence 444444 4568889999999999885 8899999999987543 234457899999999999999999999 67888
Q ss_pred eeEEEEEE
Q psy17146 619 GAEATVYL 626 (1011)
Q Consensus 619 s~~~~l~V 626 (1011)
+.++.|.|
T Consensus 82 ~~s~~l~V 89 (90)
T d1gsma1 82 QHTVQLLV 89 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888877
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.22 E-value=3e-12 Score=107.57 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=70.9
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+|..+++++++.+|++++|.|.+..+.+.+.|+|+|..+. ..+|+.+..++ +.++|.|.+++.+|+|.|+|.
T Consensus 3 ~i~~~l~d~~v~~G~~~~~~c~vs~p~~~v~W~k~g~~i~------~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~c~ 74 (89)
T d1tiua_ 3 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLT------ASPDCEIIEDG--KKHILILHNCQLGMTGEVSFQ 74 (89)
T ss_dssp CCSBCCCCEEEETTSCCCEEEBCSSSSCCCBCCSSSCCCC------SSSSCEEEECS--SCEEEECCSCCSCCCSEECCB
T ss_pred EEEcCCcCEEEeCCCcEEEEEEECCCCcEEEEEEeeeecc------cceeEEEEeec--eeEEEEEcCCChhcCEEEEEE
Confidence 4777889999999999999999988888999999997764 34677776653 567999999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEc
Q psy17146 109 VSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
+.|. ...+.|+|.+
T Consensus 75 a~n~--------~~sa~l~V~e 88 (89)
T d1tiua_ 75 AANA--------KSAANLKVKE 88 (89)
T ss_dssp CSSC--------BCCEEEEEEC
T ss_pred ECce--------EEEEEEEEEE
Confidence 8663 2347777764
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=1.2e-11 Score=109.07 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=63.8
Q ss_pred eeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCC--cCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 639 FGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP--LKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.+.+|++++|.|.+. |.|.+ .|+|+|+|..+.............. ......+.|.|.+++.+|+|.|+|.|+|.+|
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G 91 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 91 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred EEecCCeEEEEEEeecCCCCC-EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence 578999999999985 88999 9999999998875322221111110 0122356899999999999999999999999
Q ss_pred CeEE--EEEEEecC
Q psy17146 716 SDSV--EIMLKPQK 727 (1011)
Q Consensus 716 ~~~~--~~~l~V~~ 727 (1011)
+... .++|.|.+
T Consensus 92 ~~~~s~~v~l~V~~ 105 (110)
T d1f97a2 92 TAMRSEAAHMDAVE 105 (110)
T ss_dssp CCEECCCEEEEEES
T ss_pred cEEEEEEEEEEEEe
Confidence 7754 56666644
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.8e-11 Score=105.71 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCCeeecCCeeeecCCCcEEEEEEccCCCC---CcEEEEEeCCceeee---ceeEEEeeecCCceEEEEEEEEEeeccC
Q psy17146 132 PDPPRIVQGDTLYTTEDREIELECISANGKP---PAEITWIDGTGTVMS---NVRVTEEASVDGRRTTVKSTLVLTPKKE 205 (1011)
Q Consensus 132 p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P---~~~i~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 205 (1011)
|.+.++..+..+.+.+|+++.|.|. +.|.| .|.+.|+|++..... +.++..............+.|.|.+++.
T Consensus 3 p~~~Fv~~P~~~~v~~G~~v~l~C~-v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 81 (110)
T d2avga1 3 PIGLFVMRPQDGEVTVGGSITFSAR-VAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81 (110)
T ss_dssp TTCSEEECCCCEEEETTSEEEEEEE-EECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT
T ss_pred CCCEeEECCCeEEEECCCCEEEEEe-ecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH
Confidence 4445566677888999999999999 67888 689999998765433 2223222222222233457899999999
Q ss_pred cCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 206 HHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 206 ~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
+|+|.|+|.|.|..|.. ++.+.|.|.
T Consensus 82 ~D~G~Y~C~a~N~~G~~--~~~~~L~V~ 107 (110)
T d2avga1 82 AFTGGYRCEVSTKDKFD--CSNFNLTVH 107 (110)
T ss_dssp TCCEEEEEEEEETTEEE--EEEEEEEEE
T ss_pred HHCcEEEEEEEECCCeE--EEEEEEEEE
Confidence 99999999999999987 555556554
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.20 E-value=1.5e-11 Score=102.87 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDVTY 389 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~ 389 (1011)
+...+.+|+.++|.|.+.+.+++..+.|||||..+........|.|.++..+ |+|.|+|.|.|..|.. +..+.|.|..
T Consensus 8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~-dsG~Y~C~a~n~~g~~~S~~v~l~V~~ 86 (88)
T d2fcba2 8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHS-HSGDYHCTGNIGYTLYSSKPVTITVQA 86 (88)
T ss_dssp SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGG-GCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHH-HCCeEEEEEEeCCCCEEeeeEEEEEeC
Confidence 4556889999999999987766669999999999877667789999999998 9999999999998865 5678888865
Q ss_pred c
Q psy17146 390 G 390 (1011)
Q Consensus 390 ~ 390 (1011)
|
T Consensus 87 P 87 (88)
T d2fcba2 87 P 87 (88)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.20 E-value=2.8e-11 Score=106.56 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred cceeecC-CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------------------ecCCCcEEEeecCC
Q psy17146 544 GPRFRAR-PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------------------VGNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~-p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------------------~~~~~~L~I~~v~~ 600 (1011)
+|.|... |.++.+.+|++++|.|.+.|.|.|.|.|+|++.... ....+.|.|.++..
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 83 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 83 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence 5777765 789999999999999999999999999999753210 01125799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+|+|.|+|.|.| ..|...+.+.|.|
T Consensus 84 ~D~G~Y~C~a~N-~~G~~~~~~~L~V 108 (109)
T d2fdbp2 84 EDAGEYTCLAGN-SIGISFHSAWLTV 108 (109)
T ss_dssp GGCEEEEEEEEC-SSCEEEEEEEEEE
T ss_pred HHCeEEEEEEEE-CCCEEEEEEEEEE
Confidence 999999999999 6888888888887
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.7e-12 Score=111.21 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCeeec-CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecC-CcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIIS-HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLED-PLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~-~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
||.+.. .....+.+|+.++|.|.+ .|.|.| .+.|+|+|..+............. .......+.|.|.++..+|.|.
T Consensus 2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~ 80 (104)
T d1nbqa2 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 80 (104)
T ss_dssp CCCCCCCCCBSEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred CCcccccCCCCEEecCCcEEEEEEeecCCCCC-EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence 565542 234568899999999998 489999 999999999987532222111111 0112235789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|+|.+|++..+..|.+
T Consensus 81 Y~C~a~N~~G~~~~s~~v~v 100 (104)
T d1nbqa2 81 YSCEARNGYGTPMTSNAVRM 100 (104)
T ss_dssp EEEEEECSSSCCEECCCBCC
T ss_pred EEEEEEECCCceEEEEEEEE
Confidence 99999999998877665544
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.9e-11 Score=101.84 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=67.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
..+..+.+|++++|.|.+ +.|.| .+.|+|+|+++..+...++.+.. ++....|.|.++..+|+|.|+|.|.|.
T Consensus 7 l~~~~v~~G~~v~l~C~v-~~p~~-~v~W~k~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~- 79 (90)
T d1x44a1 7 LEDTTAYCGERVELECEV-SEDDA-NVKWFKNGEEIIPGPKSRYRIRV----EGKKHILIIEGATKADAAEYSVMTTGG- 79 (90)
T ss_dssp CCCEEEETTEEEEEEEEC-SSSSC-CCEEEETTEECCCSTTCSEEEEE----ETTEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred CCCEEEeCCCcEEEEEEE-CCCCc-eEEEEEeecccCCCCCccEEEEE----eCCccEEEECccccccCEEEEEEEecc-
Confidence 467889999999999998 56888 89999999999876666676655 345689999999999999999999774
Q ss_pred CCeEEEEEEEec
Q psy17146 715 GSDSVEIMLKPQ 726 (1011)
Q Consensus 715 G~~~~~~~l~V~ 726 (1011)
+.++.|+|+
T Consensus 80 ---~~~a~l~V~ 88 (90)
T d1x44a1 80 ---QSSAKLSVD 88 (90)
T ss_dssp ---EEEEEEEEE
T ss_pred ---eEEEEEEEE
Confidence 556667664
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2e-11 Score=102.28 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=63.8
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
++...+.+|+.++|.|.+.+.+.+..+.|+|||+.+.... ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus 7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------------~~~~l~i~~~~~~dsG~Y~C~a~n~~ 72 (89)
T d1f2qa2 7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------------ENHNISITNATVEDSGTYYCTGKVWQ 72 (89)
T ss_dssp ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------------CSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------------ccceEEEeeeeeecCcEEEEEEEeCC
Confidence 4455688999999999998886665999999999886311 13579999999999999999999998
Q ss_pred CCe-EEEEEEEecC
Q psy17146 715 GSD-SVEIMLKPQK 727 (1011)
Q Consensus 715 G~~-~~~~~l~V~~ 727 (1011)
|.. +..+.|+|..
T Consensus 73 ~~~~S~~v~i~V~~ 86 (89)
T d1f2qa2 73 LDYESEPLNITVIK 86 (89)
T ss_dssp EEEECCCEEEEEEC
T ss_pred CCeEeeeEEEEEEe
Confidence 854 5667777753
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.18 E-value=5.6e-11 Score=101.70 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
++++.+.+|++++|.|.+.+ |.+.+.|+|++..+.... +..+.........+|.|.+++.+|+|.|+|.|.|.
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 83 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP------EDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 83 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCT------TSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccc------eeeeeeeeecCCCEEEEEeccccccEEEEEEEEEC
Confidence 67999999999999999987 677999999998874322 22222223334458999999999999999999986
Q ss_pred CCCCcceeeeEEEEEEE
Q psy17146 113 ILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 113 ~~~~~~~~s~~~~l~V~ 129 (1011)
.+. ..+..+.|+|.
T Consensus 84 ~G~---~~s~s~~L~Vl 97 (97)
T d1biha3 84 VGK---PQKHSLKLTVV 97 (97)
T ss_dssp SSS---CEEEEEEEEEE
T ss_pred CCc---EEEEEEEEEEC
Confidence 432 13456777763
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=9.3e-12 Score=105.07 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=63.3
Q ss_pred cCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..+|.|.. +....+.+|++++|.|.+.|.|.+.+|+|+|+|..+.. ..+..... ..+|.|.+++.+|+|.
T Consensus 4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~--~~~~~~~~-------~~~L~I~~v~~~D~G~ 74 (93)
T d1n26a1 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS--HPSRWAGM-------GRRLLLRSVQLHDSGN 74 (93)
T ss_dssp SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC--CCEEEEEE-------SSEEEECSCCGGGCEE
T ss_pred CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc--eeeEEecC-------CCEEEECCCChhcCEE
Confidence 35677774 45677889999999999999876548999999998863 33333322 3589999999999999
Q ss_pred EEEEEEcCCCC
Q psy17146 706 YNCSVSNPYGS 716 (1011)
Q Consensus 706 Y~C~a~N~~G~ 716 (1011)
|+|.|.|..+.
T Consensus 75 Y~C~a~n~~~~ 85 (93)
T d1n26a1 75 YSCYRAGRPAG 85 (93)
T ss_dssp EEEESSSSCSC
T ss_pred EEEEECCcccc
Confidence 99999887643
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.17 E-value=2.8e-11 Score=103.12 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=66.3
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.|.|...|.++.+.+|+.+.|.|.+.|.|.| .+.|+++|..+. ....++|.|.++..+|+|.|+|.|.| .
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~ 80 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET-P 80 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE-T
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEe-C
Confidence 5889999999999999999999999999976 799999986542 34457999999999999999999999 4
Q ss_pred CCc-eeeEEEE
Q psy17146 615 FPE-VGAEATV 624 (1011)
Q Consensus 615 ~~~-~s~~~~l 624 (1011)
.|. .+..+.|
T Consensus 81 ~G~~~s~~v~l 91 (94)
T d1biha1 81 AGVASSRVISF 91 (94)
T ss_dssp TEEEECCCEEE
T ss_pred CCEEEEEEEEE
Confidence 554 3344443
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.5e-11 Score=103.91 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=71.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-C-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-K-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.|..++.+.++.+|++++|.|.+.+ + .|.+.|+|++..+.... ...+.....++..+.+.|.|.+++.+|+|.|
T Consensus 4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 80 (104)
T d2aw2a1 4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL---EDRQTSWKEEKNISFFILHFEPVLPNDNGSY 80 (104)
T ss_dssp EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEEC---CSSCEEEEECSSCEEEEEEESSCCGGGCEEE
T ss_pred cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccccccc---ceeeeeEEecCCceEEEEEEccccHHHCCeE
Confidence 55788899999999999999999997 5 47999999986553211 1122233333445567899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
+|.|.|..+ ...+..+.|.|.+
T Consensus 81 ~C~A~N~~G---~~~s~~~~l~V~e 102 (104)
T d2aw2a1 81 RCSANFQSN---LIESHSTTLYVTD 102 (104)
T ss_dssp EEEEEETTE---EEECCCEEEEEEC
T ss_pred EEEEEcCCC---eEEEEEEEEEEEE
Confidence 999999632 1234567777764
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.3e-11 Score=101.66 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCeee-cC-CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTII-SH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~-~~-~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+|.|. .. +...+.+|+.+.|.|.+. .|.| .+.|+|||..|.. ...++.+.. .+....|.|.++..+|+|.|
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~-~v~W~k~g~~i~~-~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y 77 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDA-EVKWLKNGQEIQM-SGSKYIFES----IGAKRTLTISQCSLADDAAY 77 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEECS-SSSS-CCEEEESSSEECC-CSSSSEEEE----ETTEEEEEECSCSSSSCEEE
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCc-eEEEEEcCcccee-eeeeEeeec----cCCeEEeecCCCCceecEEE
Confidence 45554 32 345689999999999984 5888 8999999999975 334555554 34467999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|. +.++.|.|+
T Consensus 78 ~c~a~n~----~~s~~l~V~ 93 (94)
T d1pd6a_ 78 QCVVGGE----KCSTELFVK 93 (94)
T ss_dssp EEEETTE----EECCEEEEE
T ss_pred EEEEeeE----EEEEEEEEE
Confidence 9999774 445566653
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.5e-11 Score=105.05 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC--------------CCcEEEeecCCCCCEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN--------------SPNLTLLMTSDDLAGRY 606 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~--------------~~~L~I~~v~~~d~G~Y 606 (1011)
|+.||.|..... ...++...|.|.+.|.|.|.+.|+|+|..+.... .+.|+|.+++.+|+|.|
T Consensus 1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 77 (103)
T d1wwbx_ 1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 77 (103)
T ss_dssp CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred CccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceE
Confidence 346777754322 2467888899999999999999999986543211 24699999999999999
Q ss_pred EEEEEecCCCceeeEEEEEEcCCCee
Q psy17146 607 YCKASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 607 ~C~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
+|.|+| ..|+.+..+.|.|.++|.|
T Consensus 78 ~C~a~N-~~G~~~~~~~v~V~~~P~i 102 (103)
T d1wwbx_ 78 TLIAKN-EYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEEC-SSCEEEEEEEECCSCCCCC
T ss_pred EEEEec-cCCEEEEEEEEEEEeCCCC
Confidence 999999 7899999999999998865
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.16 E-value=3.3e-11 Score=100.87 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDVTY 389 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~ 389 (1011)
+...+.+|+.++|.|.+.+.+++..+.|||||+.+........|.|.+++.+ |+|.|+|+|.|..|.. +..+.|.|.+
T Consensus 10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~-dsG~Y~C~a~n~~~~~~S~~v~itV~E 88 (89)
T d1fnla2 10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLK-DSGSYFCRGLVGSKNVSSETVNITITQ 88 (89)
T ss_dssp SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGG-GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECcccee-ccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence 4456889999999999987666669999999999877667789999999998 9999999999988865 4678888864
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2e-11 Score=102.94 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=64.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
...+.+|+++.|.|.+.| |.| .+.|+++|+.+.. ...++.+..+ +.|.|.++..+|+|.|+|.|.|..|.
T Consensus 6 ~~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~l~~-~~~~~~~~~~-------~~L~I~~v~~~DsG~Y~C~A~n~~g~ 75 (92)
T d1olza1 6 QHFFKHGGTAELKCSQKS-NLA-RVFWKFQNGVLKA-ESPKYGLMGR-------KNLLIFNLSEGDSGVYQCLSEERVKN 75 (92)
T ss_dssp EEEEETTSCEEECCCCSC-TTC-EEEEEESSSBCCC-CSSSBCCTTT-------TCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred heeEeCCCEEEEEEEeec-cCC-ceeeecCccccee-eeeeeeccee-------eEEEECCCCHHHCcEEEEEEEEcCCC
Confidence 467899999999999998 667 8999999999875 3445554432 47999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
.+....|.+
T Consensus 76 ~~~~~~l~~ 84 (92)
T d1olza1 76 KTVFQVVAK 84 (92)
T ss_dssp SEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 776655543
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=3.5e-11 Score=102.91 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=69.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+.+.+.++.+|++++|.|.+.++.+.+.|++++..+.. ..++.+... ..+|+|.+++.+|+|.|+|.|.|
T Consensus 8 i~~~~~~v~~g~~v~l~C~~~~~~~~v~W~~~~~~l~~------~~~~~~~~~----~~~L~I~~v~~~d~G~Y~C~a~N 77 (96)
T d1l6za2 8 LQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQL------TERMTLSQN----NSILRIDPIKREDAGEYQCEISN 77 (96)
T ss_dssp EECSCSEECTTSCEEEEECCCCSSCEEEEEETTEECCC------CTTEEEETT----TTEEEECSCCGGGCEEEEEEEES
T ss_pred EEcCceEEeCCCeEEEEEccCCCCCCEEEEEeeeeccc------ccceeccCC----ceEEEEeccchhhceEEEEEEEe
Confidence 34678899999999999999887789999999977643 345555432 34799999999999999999998
Q ss_pred CCCCCcceeeeEEEEEEEcCC
Q psy17146 112 GILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V~~~p 132 (1011)
..+ ...+..+.|+|..+|
T Consensus 78 ~~g---~~~S~~~~L~V~~~P 95 (96)
T d1l6za2 78 PVS---VRRSNSIKLDIIFDP 95 (96)
T ss_dssp SSC---CEECCCCEEEECCSC
T ss_pred CCC---CeEEEeEEEEEEcCC
Confidence 642 234567889998766
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.14 E-value=2.3e-11 Score=105.76 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=65.5
Q ss_pred CceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
....+.+|+.+.|.|.+ .|.|.| .|+|+|||..+......+...... .++|.|.++..+|+|.|+|.|+|..
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~ 84 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQT------TGNLYIAKTEASDLGNYSCFATSHI 84 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCCCSSEEECTT------TCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCC-EEEEEEeeccccccccceeeeecC------CCEEeecccccccCcEEEEEEEECC
Confidence 45679999999999997 688999 999999998876544444444322 3589999999999999999999999
Q ss_pred CCeEEEEE
Q psy17146 715 GSDSVEIM 722 (1011)
Q Consensus 715 G~~~~~~~ 722 (1011)
|+.+.++.
T Consensus 85 g~~~~~v~ 92 (105)
T d1cs6a2 85 DFITKSVF 92 (105)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 98877653
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=7.9e-12 Score=106.02 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=70.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCE-EEEEEEEecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAG-RYYCKASVMGF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~ 615 (1011)
.|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+. ......|.|.++..+|.| .|+|+|.| ..
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N-~~ 80 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN-DV 80 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEE-TT
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEc-CC
Confidence 4888888889999999999999999999999999999986543 233468999999999999 69999999 67
Q ss_pred CceeeEEEEEE
Q psy17146 616 PEVGAEATVYL 626 (1011)
Q Consensus 616 ~~~s~~~~l~V 626 (1011)
|..+.++.|.|
T Consensus 81 G~~~~s~~l~V 91 (92)
T d2ifga1 81 GRAEVSVQVNV 91 (92)
T ss_dssp EECCEEECCCC
T ss_pred CEEEEEEEEEE
Confidence 78888777765
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.4e-12 Score=111.45 Aligned_cols=101 Identities=21% Similarity=0.374 Sum_probs=72.6
Q ss_pred CCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCc-eEEEEEEEEEeeccCcCCc
Q psy17146 131 PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR-RTTVKSTLVLTPKKEHHNT 209 (1011)
Q Consensus 131 ~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~d~G 209 (1011)
||..+.+.. ...+.+|+.+.|.|.+..|+|.+.+.|+|++..+.....+......... .....+.|.|.+++.+|+|
T Consensus 2 PP~~p~~~~--~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G 79 (104)
T d1nbqa2 2 PPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 79 (104)
T ss_dssp CCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred CCcccccCC--CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence 455444433 3456789999999996679999999999999888664433221111111 1112257999999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 210 TFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
.|+|.|.|..|....+..++|++.
T Consensus 80 ~Y~C~a~N~~G~~~~s~~v~v~v~ 103 (104)
T d1nbqa2 80 EYSCEARNGYGTPMTSNAVRMEAV 103 (104)
T ss_dssp CEEEEEECSSSCCEECCCBCCEEE
T ss_pred EEEEEEEECCCceEEEEEEEEEEE
Confidence 999999999998877777777664
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.6e-11 Score=109.76 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=70.0
Q ss_pred ecceee-----cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------------------------------
Q psy17146 543 YGPRFR-----ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------------------------------- 586 (1011)
Q Consensus 543 ~~P~~~-----~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------------------------------- 586 (1011)
.||+|. ..|..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+.
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence 577764 34678999999999999999999999999999863321
Q ss_pred -------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 587 -------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 587 -------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
......|+|.++..+|+|.|+|.|.| ..|..+..+.|.|.+
T Consensus 83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~d 130 (130)
T d1gxea_ 83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN-PVGEDQVNLTVKVID 130 (130)
T ss_dssp SSCEEEEETTEEEEECSCCCTTTCEEEEEEEEC-SSCEEEEEEEEEECC
T ss_pred ceEEEEECCCEEEEEECcCChhcCEEEEEEEEE-CCCEEEEEEEEEEEC
Confidence 01124699999999999999999999 688899999998863
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=3.4e-11 Score=104.41 Aligned_cols=95 Identities=13% Similarity=0.202 Sum_probs=66.7
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc--CCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG--SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
|.+. .+....+.+|++++|.|.+.|.|.| .|.|++++..+... .................++|.|.++..+|+|.|
T Consensus 2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y 80 (102)
T d1f97a1 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80 (102)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred CCEEccCCcEEEeCCCEEEEEEEcCCCCCC-eEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence 3444 4567789999999999999999999 99999865433221 011110000000011235799999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|.|..|.....+.|.|
T Consensus 81 ~C~a~n~~g~~~~~~~v~v 99 (102)
T d1f97a1 81 TCMVSEEGGQNYGEVSIHL 99 (102)
T ss_dssp EEEEEETTSSSEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEE
Confidence 9999999999888777765
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-10 Score=98.20 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=64.3
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-----cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-----~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
..+.+|+.+.|.|.+.+.|.| .+.|++++..+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|
T Consensus 11 ~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-d~G~Y~C~a~N~~g~~~~~~~v~V 88 (90)
T d1vcaa2 11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG-NEHSYLCTATCESRKLEKGIQVEI 88 (90)
T ss_dssp EEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCSSEEEEETTEEEEEESSCCGG-GCSEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEeccCCCCc-eEEEEecCccceeeeeeeecCCcEEEEeccccc-ccceEEEEEEeCCCEEEEEEEEEE
Confidence 455789999999999999987 99999987765443 34578999999998 999999999999999999999988
Q ss_pred E
Q psy17146 388 T 388 (1011)
Q Consensus 388 ~ 388 (1011)
.
T Consensus 89 ~ 89 (90)
T d1vcaa2 89 Y 89 (90)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.7e-11 Score=105.77 Aligned_cols=90 Identities=13% Similarity=0.238 Sum_probs=66.1
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC--cCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP--LKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
++...+.+|++++|.|.+.|.|.| .+.|+|++..+.............. ......++|.|.++..+|+|.|+|.|.|
T Consensus 11 ~~~v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 89 (105)
T d1nbqa1 11 EPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE 89 (105)
T ss_dssp CSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred CCeEEEeCCCeEEEEEEeCCCCCC-eeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEE
Confidence 355678999999999999999999 9999998765543111111111100 0001235899999999999999999999
Q ss_pred CCCCeEEEEEEEe
Q psy17146 713 PYGSDSVEIMLKP 725 (1011)
Q Consensus 713 ~~G~~~~~~~l~V 725 (1011)
..|.....+.|.+
T Consensus 90 ~~G~~~~~~~v~v 102 (105)
T d1nbqa1 90 EGGNSYGEVKVKL 102 (105)
T ss_dssp TTSSCEECCEEEC
T ss_pred CCCCEEEEEEEEE
Confidence 9999988877765
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=1.3e-10 Score=99.46 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=62.4
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCC-CeEEEEecCCceee------------cCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKVV------------GNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k~~~~~~~------------~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
+...|.+..+.+|+++.|.|.+.|.|. +.+.|+|++..... ...++|.|.++..+|+|.|+|.|.|.
T Consensus 3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 82 (97)
T d1epfa1 3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 82 (97)
T ss_dssp EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence 344577888999999999999999985 79999996533221 12357999999999999999999994
Q ss_pred CCCc-eeeEEEEEEc
Q psy17146 614 GFPE-VGAEATVYLK 627 (1011)
Q Consensus 614 ~~~~-~s~~~~l~V~ 627 (1011)
.|. .++.+.|.|.
T Consensus 83 -~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 83 -DGTQSEATVNVKIF 96 (97)
T ss_dssp -TTEEEEEEEEEEEE
T ss_pred -CCcEEEEEEEEEEE
Confidence 454 4566777764
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=7e-11 Score=100.99 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=63.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC-Cc--e------eec---CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED-SD--K------VVG---NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~-~~--~------~~~---~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.|.|. .++++.+.+|++++|.|.+.|.|.|.+.|++.+ .. . ... ..++|.|.++..+|+|.|+|+|.
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 80 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 80 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence 58887 589999999999999999999998876654322 11 1 111 12579999999999999999999
Q ss_pred ecCCCc-eeeEEEEEEc
Q psy17146 612 VMGFPE-VGAEATVYLK 627 (1011)
Q Consensus 612 n~~~~~-~s~~~~l~V~ 627 (1011)
| ..|+ .+..+.|.|+
T Consensus 81 N-~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 81 T-EGGVGISNYAELVVK 96 (96)
T ss_dssp E-TTEEEEEEEEEEEEC
T ss_pred e-CCCeEEEEEEEEEEC
Confidence 9 4565 4566788874
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.11 E-value=9e-11 Score=97.08 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=63.0
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|.|. .|....+.+|++++|+|.+.|.|.+..+.|+++|..+... ..+|.|.++..+|+|.|+
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~Y~ 68 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------------ASSYFIDAATVNDSGEYR 68 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------------CSEEEESSCCGGGCEEEE
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------------ceeeEecCCcccCCEEEE
Confidence 46665 4567789999999999999999998567888999887521 257999999999999999
Q ss_pred EEEEcCCCCeEEEE
Q psy17146 708 CSVSNPYGSDSVEI 721 (1011)
Q Consensus 708 C~a~N~~G~~~~~~ 721 (1011)
|.|.|..+++...+
T Consensus 69 C~a~~s~~S~~v~L 82 (84)
T d1fnla1 69 CQTNLSTLSDPVQL 82 (84)
T ss_dssp EECSSSCCCCCEEE
T ss_pred EEccCCCccccEEE
Confidence 99999877665444
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=7.8e-11 Score=102.06 Aligned_cols=94 Identities=19% Similarity=0.320 Sum_probs=70.9
Q ss_pred ecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE--EeeecCCceEEEEEEEEEeeccCcCCcEEEEEE
Q psy17146 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT--EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 215 (1011)
...+.+.+.+|+++.|.|. +.|.|.|.+.|+|++.......... .......+.....++|.|.+++.+|+|.|+|.|
T Consensus 6 t~~~~v~v~~G~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a 84 (102)
T d1f97a1 6 TAQSDVQVPENESIKLTCT-YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMV 84 (102)
T ss_dssp CSCSEEEEETTCCEEEECE-EESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred ccCCcEEEeCCCEEEEEEE-cCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEE
Confidence 3445778899999999999 6789999999999776654422221 112223344445568999999999999999999
Q ss_pred EeCCCCceeEEEEEEEE
Q psy17146 216 QNTADRTYKVARLKLLV 232 (1011)
Q Consensus 216 ~n~~g~~~~s~~v~v~v 232 (1011)
.|..|....+..+.|.|
T Consensus 85 ~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 85 SEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp EETTSSSEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEEE
Confidence 99999986677777665
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.7e-11 Score=100.64 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=60.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CC-CeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KT-GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~-~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
.+|.|.+.++.+++.+|++++|.|.+.+ +. +++.|+|++..+... .+...... .+|.|.+++.+|+|
T Consensus 5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~------~~~~~~~~-----~~L~I~~v~~~D~G 73 (93)
T d1n26a1 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH------PSRWAGMG-----RRLLLRSVQLHDSG 73 (93)
T ss_dssp CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC------CEEEEEES-----SEEEECSCCGGGCE
T ss_pred CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce------eeEEecCC-----CEEEECCCChhcCE
Confidence 4688999999999999999999999987 43 489999999766422 33333222 27999999999999
Q ss_pred eEEEEEEeC
Q psy17146 104 RYQCQVSTG 112 (1011)
Q Consensus 104 ~Y~C~~~~~ 112 (1011)
.|+|.+.+.
T Consensus 74 ~Y~C~a~n~ 82 (93)
T d1n26a1 74 NYSCYRAGR 82 (93)
T ss_dssp EEEEESSSS
T ss_pred EEEEEECCc
Confidence 999999764
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.10 E-value=5.3e-11 Score=98.81 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=63.9
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+....+.+|+.++|.|.+.+.|.+..+.|++||..+... ...|.|.++..+|+|.|+|
T Consensus 5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------------~~~l~i~~v~~~dsG~Y~C 68 (85)
T d2fcba1 5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------------TQPSYRFKANNNDSGEYTC 68 (85)
T ss_dssp CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------------CSSEEEEECCGGGCEEEEE
T ss_pred CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------------ccceEEeeccccCCcEEEE
Confidence 4455 4566789999999999999999988679999999998631 2579999999999999999
Q ss_pred EEEcCCCCeEEEEEE
Q psy17146 709 SVSNPYGSDSVEIML 723 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l 723 (1011)
.|.|..+++...++|
T Consensus 69 ~a~ns~~S~~v~l~V 83 (85)
T d2fcba1 69 QTGQTSLSDPVHLTV 83 (85)
T ss_dssp ECTTSBCCCCEEEEE
T ss_pred ECCCCcccccEEEEE
Confidence 999998777655444
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=5.8e-11 Score=102.01 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=68.5
Q ss_pred CceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
....+.+|+.+.|.|.+. +.|.+ .|+|+|+|..+......+..+... .++|.|.+++.+|+|.|+|.|.|..
T Consensus 10 ~~~~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~ 82 (101)
T d1iray1 10 IILVSSANEIDVRPCPLNPNEHKG-TITWYKDDSKTPVSTEQASRIHQH------KEKLWFVPAKVEDSGHYYCVVRNSS 82 (101)
T ss_dssp CCEEEETTSCEEECCCCCGGGCSS-EEEEECSSTTSBCCCCTTSSEEEE------TTEEEETTCCGGGCEEEEEEEEETT
T ss_pred cEEEEeCCCeEEEEeeCCCCCCCc-eEEEEECCcccccccccceEEecc------CCEEEeccceecCCEEEEEEEECCC
Confidence 345677899999999886 56777 999999997765433333333321 2589999999999999999999999
Q ss_pred CCeEEEEEEEecCC
Q psy17146 715 GSDSVEIMLKPQKS 728 (1011)
Q Consensus 715 G~~~~~~~l~V~~~ 728 (1011)
|....++.|.|.+.
T Consensus 83 g~~~~~~~L~V~~~ 96 (101)
T d1iray1 83 YCLRIKISAKFVEN 96 (101)
T ss_dssp EEEEEEEEEEEECC
T ss_pred CeEEEEEEEEEEeC
Confidence 99999999998643
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.08 E-value=4.7e-11 Score=102.29 Aligned_cols=82 Identities=24% Similarity=0.394 Sum_probs=66.3
Q ss_pred ecceeecCCceEEEcCC---CcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRG---AGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G---~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
++|.|...|.+..+.+| ++++|.|.+.|.|.|.++|+|+|..+. ...+..|.|..+..+|+|.|+|+|.
T Consensus 3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 82 (97)
T d1cs6a1 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT 82 (97)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence 57999999999888776 789999999999999999999985543 2334568888899999999999999
Q ss_pred ecCCCce-eeEEEEE
Q psy17146 612 VMGFPEV-GAEATVY 625 (1011)
Q Consensus 612 n~~~~~~-s~~~~l~ 625 (1011)
| ..|.. +..+.|.
T Consensus 83 N-~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 83 N-ARGTVVSREASLR 96 (97)
T ss_dssp E-TTEEEECCCEEEE
T ss_pred E-CCCEEEEEEEEEe
Confidence 9 45553 5566653
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=6.4e-11 Score=97.48 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=59.7
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|.|. .|....+.+|+.++|.|.+.+.|.+..+.|+++|..+... ...|.|.+++.+|+|.|.
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~i~~v~~~d~G~Y~ 64 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------------NSSLNIVNAKFEDSGEYK 64 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------------SSEEEECSCCGGGCEEEE
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------------cceeEECCCChhhCCcEE
Confidence 36666 4556779999999999999999998567788998887521 257999999999999999
Q ss_pred EEEEcCCCCeEEEEE
Q psy17146 708 CSVSNPYGSDSVEIM 722 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~ 722 (1011)
|.|.|..+++...+.
T Consensus 65 C~a~~s~~S~~v~l~ 79 (82)
T d1f2qa1 65 CQHQQVNESEPVYLE 79 (82)
T ss_dssp EECTTSSCCCCEEEE
T ss_pred EEecCCCCcccEEEE
Confidence 999998777654443
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.6e-10 Score=100.55 Aligned_cols=84 Identities=17% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
+....|.|. +.|+|.|+++|+|++..+..+.+.......+.. ...+.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 17 ~~~~~i~~~-v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~--~~~ 91 (105)
T d1wwca_ 17 RLEHCIEFV-VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE--ISEGCLLFNKPTHYNNGNYTLIAKNPLGTA--NQT 91 (105)
T ss_dssp CCEEEEEEE-EECSSCCEEEEEETTEECCCSSSEEEEEEECSS--EEEEEEEEESCCGGGCEEEEEEEEETTEEE--EEE
T ss_pred EEEEEEEEE-EEEeCCCeEEEEeCccccCCCcceeeeEEeecc--cceEEEEEeecccccceEEEEEEEcCCCEE--EEE
Confidence 444567888 679999999999999988776555443333332 234689999999999999999999999976 566
Q ss_pred EEEEEEeCC
Q psy17146 228 LKLLVKYAP 236 (1011)
Q Consensus 228 v~v~v~~~P 236 (1011)
+.|.|...|
T Consensus 92 ~~v~V~~~P 100 (105)
T d1wwca_ 92 INGHFLKEP 100 (105)
T ss_dssp EEECCSCCC
T ss_pred EEEEEEeCC
Confidence 666666555
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5.8e-11 Score=103.65 Aligned_cols=91 Identities=20% Similarity=0.382 Sum_probs=69.0
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE--eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE--EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+.+.+.+|+++.|.|. +.|.|.|.+.|+|++..+........ ......+.....++|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~~v~v~~g~~v~L~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 90 (105)
T d1nbqa1 12 PEVRIPENNPVKLSCA-YSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90 (105)
T ss_dssp SBCCEETTCCCEEECE-EESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred CeEEEeCCCeEEEEEE-eCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence 4667889999999999 77999999999998877655333221 12223334444468999999999999999999999
Q ss_pred CCCceeEEEEEEEE
Q psy17146 219 ADRTYKVARLKLLV 232 (1011)
Q Consensus 219 ~g~~~~s~~v~v~v 232 (1011)
.|.......+.|.|
T Consensus 91 ~G~~~~~~~v~v~V 104 (105)
T d1nbqa1 91 GGNSYGEVKVKLIV 104 (105)
T ss_dssp TSSCEECCEEECCE
T ss_pred CCCEEEEEEEEEEE
Confidence 99886666666554
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.04 E-value=3.4e-11 Score=100.97 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=65.9
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+..+..+.+|+++.|.|.+ +.|.| .+.|+|||+++. .+.++.+.. .+....|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~l~d~~v~~G~~~~~~c~v-s~p~~-~v~W~k~g~~i~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 78 (89)
T d1tiua_ 7 PLYGVEVFVGETAHFEIEL-SEPDV-HGQWKLKGQPLT--ASPDCEIIE----DGKKHILILHNCQLGMTGEVSFQAANA 78 (89)
T ss_dssp CCCCEEEETTSCCCEEEBC-SSSSC-CCBCCSSSCCCC--SSSSCEEEE----CSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred CCcCEEEeCCCcEEEEEEE-CCCCc-EEEEEEeeeecc--cceeEEEEe----eceeEEEEEcCCChhcCEEEEEEECce
Confidence 3467889999999999998 57888 899999999997 456777765 345689999999999999999999886
Q ss_pred CCCeEEEEEEEec
Q psy17146 714 YGSDSVEIMLKPQ 726 (1011)
Q Consensus 714 ~G~~~~~~~l~V~ 726 (1011)
.++ +.|.|.
T Consensus 79 ~~s----a~l~V~ 87 (89)
T d1tiua_ 79 KSA----ANLKVK 87 (89)
T ss_dssp BCC----EEEEEE
T ss_pred EEE----EEEEEE
Confidence 543 455553
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.7e-10 Score=99.19 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=67.6
Q ss_pred eeeecCCCcEEEEE---EccCCCCCcEEEEEeCCceeeeceeEEEeee-cCCceEEEEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 142 TLYTTEDREIELEC---ISANGKPPAEITWIDGTGTVMSNVRVTEEAS-VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C---~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
.+.+.+|....+.| . +.|+|.|+++|+|++..+..+........ .........+.|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~~~~~g~~~~~~ci~~~-v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N 84 (107)
T d1he7a_ 6 SVQLHTAVEMHHWCIPFS-VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 84 (107)
T ss_dssp CCCCCCCCCCCEEEEEEE-ECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred EeEECCCeEEEEEEEEEE-EEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence 44555566666555 6 78999999999999998876544333322 2222334457899999999999999999999
Q ss_pred CCCCceeEEEEEEEEEeCCc
Q psy17146 218 TADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 218 ~~g~~~~s~~v~v~v~~~P~ 237 (1011)
..|.. ++.+.|.|..+|.
T Consensus 85 ~~G~~--~~~i~v~v~~~P~ 102 (107)
T d1he7a_ 85 PFGQA--SASIMAAFMDNPF 102 (107)
T ss_dssp TTEEE--EEEEEECCCSCTT
T ss_pred CCCEE--EEEEEEEEEcCCC
Confidence 99976 6667777766663
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.5e-10 Score=97.41 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEe-cCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFS-IPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.|+.+. .+....+.+|+.++|+|.+.| .|.| .+++|+++++.+...... .....+.|.|.....+|.|
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~---------~~~~~s~l~i~~~~~dd~g 73 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV---------GEPAEVTTTVLVRRDHHGA 73 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC---------TTTEEEEEEEECCSSCSSC
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc---------cccceEEEEEeeehhHCCC
Confidence 355555 345556889999999999997 4655 268899999998742211 1234578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|+|+|.+|+...++.+.+.+
T Consensus 74 ~ytC~A~n~~g~~~~~~~~~~s~ 96 (103)
T d1iama1 74 QFSCRTELDLRPQGLELFENTSA 96 (103)
T ss_dssp EEEEEEEEECGGGTSCEEEEECC
T ss_pred EEEEEEEeCCCCccCeEeeeEcC
Confidence 99999999999988888777753
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.6e-10 Score=97.81 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=62.4
Q ss_pred ceeeecCCcEEEEE------EEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 637 TQFGIPGDTARVEC------SAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C------~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
.+.+..|+...|.| .+.+.|.| .|.|++||++|.. ...++.... +.|.|.++..+|+|.|+|.|
T Consensus 8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~~l~~-~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a 77 (103)
T d1iray2 8 KQKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLL-DNIHFSGVK--------DRLIVMNVAEKHRGNYTCHA 77 (103)
T ss_dssp EEEEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTEECCC-CSSSEEEET--------TEEEESSCCGGGCEEEEEEE
T ss_pred EEEEecCCCEEEEcCCccccccCCCCCC-EEEEEECCccccC-CCcEEEecC--------CEEEEcccccccCcEEEEEE
Confidence 35688999999999 56799999 9999999999974 333333332 57999999999999999999
Q ss_pred EcCCCCeE----EEEEEEe
Q psy17146 711 SNPYGSDS----VEIMLKP 725 (1011)
Q Consensus 711 ~N~~G~~~----~~~~l~V 725 (1011)
.|..|... ..++|.|
T Consensus 78 ~n~~~g~~~~vt~~i~~~v 96 (103)
T d1iray2 78 SYTYLGKQYPITRVIEFIT 96 (103)
T ss_dssp EEEETTEEEEEEEEEEEEE
T ss_pred EECcCCEEEEEEEEEEEEE
Confidence 99998554 4444444
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.98 E-value=2.7e-10 Score=94.09 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=63.3
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
+|.+...|....+.+|++++|.|.+.+.|.+.+.|.+.++........+|.|.+++.+|+|.|+|+|.|. ..|..+.
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~s---~~S~~v~ 81 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLS---TLSDPVQ 81 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSS---CCCCCEE
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecceeeEecCCcccCCEEEEEEccCC---CccccEE
Confidence 4667778888899999999999999999998655544444556677789999999999999999999862 3344555
Q ss_pred EEE
Q psy17146 624 VYL 626 (1011)
Q Consensus 624 l~V 626 (1011)
|.|
T Consensus 82 L~V 84 (84)
T d1fnla1 82 LEV 84 (84)
T ss_dssp EEE
T ss_pred EEC
Confidence 544
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=6.8e-10 Score=96.91 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=64.0
Q ss_pred ceeecCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-------------C--------CCcEEEeecCCCC
Q psy17146 545 PRFRARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-------------N--------SPNLTLLMTSDDL 602 (1011)
Q Consensus 545 P~~~~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-------------~--------~~~L~I~~v~~~d 602 (1011)
|.|..++. .+.+..|++++|.|.+.|.|.|.+.|+++|..+... . ...|+|.+++.+|
T Consensus 2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 81 (107)
T d1iray3 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 81 (107)
T ss_dssp CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence 66665554 466888999999999999999999999987442110 0 1479999999999
Q ss_pred CE-EEEEEEEecCCCceeeEEEEE
Q psy17146 603 AG-RYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 603 ~G-~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
.| .|+|.|.| ..|..++.+.|.
T Consensus 82 ~g~~Y~C~A~N-~~G~~~~~i~L~ 104 (107)
T d1iray3 82 YKHPFTCFAKN-THGIDAAYIQLI 104 (107)
T ss_dssp GSSCEEEEEEC-SSCEEEEEEEEE
T ss_pred CCcEEEEEEEe-CCCeEEEEEEEE
Confidence 99 59999999 678888877775
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.94 E-value=2.8e-10 Score=98.73 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=59.0
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.+.+|+.+.|.|.+..+.|.+.++|+|++..+.............. ++|.|.+++.+|+|.|+|.|.|..|
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~g 85 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT------GNLYIAKTEASDLGNYSCFATSHID 85 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT------CCEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCC------CEEeecccccccCcEEEEEEEECCC
Confidence 4678999999999999557999999999999887644222111111111 3799999999999999999999988
Q ss_pred Cc
Q psy17146 221 RT 222 (1011)
Q Consensus 221 ~~ 222 (1011)
..
T Consensus 86 ~~ 87 (105)
T d1cs6a2 86 FI 87 (105)
T ss_dssp TE
T ss_pred CE
Confidence 75
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=7.1e-10 Score=95.42 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=72.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEec-CCCC--eEEEEecCCceeecC------CCcEEEeecCCCCCEEEEEEEEec
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAP--EITWIHEDSDKVVGN------SPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p--~v~W~k~~~~~~~~~------~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
.|+.+...+....+.+|+.++|.|.+.| .|.+ .+.|+|++..+.... ...|+|..+..+|+|.|+|+|+|
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n- 81 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL- 81 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEE-
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEe-
Confidence 4677888888888999999999999987 4655 588999986654322 35799999999999999999999
Q ss_pred CCCceeeEEEEEEcCCCeee
Q psy17146 614 GFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~~~P~i~ 633 (1011)
..++.+..+.+.+..|+.|.
T Consensus 82 ~~g~~~~~~~~~~s~p~~L~ 101 (103)
T d1iama1 82 DLRPQGLELFENTSAPYQLQ 101 (103)
T ss_dssp ECGGGTSCEEEEECCCEECE
T ss_pred CCCCccCeEeeeEcCCCEEE
Confidence 57777777788887766553
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.94 E-value=1.5e-10 Score=101.32 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=62.6
Q ss_pred ceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccC-----CCCeEEecCCcCccceeEEEEcCCCCCCCE---EEE
Q psy17146 637 TQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGS-----SDDYSVLEDPLKEGIKSTLIIRESRHDHFG---VYN 707 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~-----~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G---~Y~ 707 (1011)
+.++.+|++++|.|.+ .|.|.| .+.|+|++..+.... ..++.+.. .++|.|.+++.+|+| .|+
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~L~i~~v~~~D~gd~g~Y~ 82 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGP-------DGNLYFTIVTKEDVSDIYKYV 82 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECT-------TSCEEEEEECGGGCCSSEEEE
T ss_pred cccccCCCeEEEEEEcccCCCCC-EEEEEeCCccccccccceeeeeeecccc-------ccccEEeeeEeeccCCceEEE
Confidence 3457789999999986 899999 999999987764321 12233322 367999999988776 799
Q ss_pred EEEEcCCCCeEEEEEEEe
Q psy17146 708 CSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V 725 (1011)
|.|+|.+|.+...+.+.+
T Consensus 83 C~A~N~~g~~~~~~~~~~ 100 (111)
T d1biha2 83 CTAKNAAVDEEVVLVEYE 100 (111)
T ss_dssp EEEECTTCSSCEEEEEEE
T ss_pred EEEEeCCCCceEEEEEEE
Confidence 999999999988776654
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.2e-10 Score=94.23 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=60.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEE-EEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT-WIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~-W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
+|.|...|....+.+|+.++|.|.+.+.|.+... |++++ ......+..|.|.+++.+|+|.|+|.|.|. ..+..+
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~s---~~S~~v 76 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG-SLSEETNSSLNIVNAKFEDSGEYKCQHQQV---NESEPV 76 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETT-EECSCCSSEEEECSCCGGGCEEEEEECTTS---SCCCCE
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeee-eeeecccceeEECCCChhhCCcEEEEecCC---CCcccE
Confidence 4778888888889999999999999999988555 55554 455566789999999999999999999872 334556
Q ss_pred EEEE
Q psy17146 623 TVYL 626 (1011)
Q Consensus 623 ~l~V 626 (1011)
.|.|
T Consensus 77 ~l~V 80 (82)
T d1f2qa1 77 YLEV 80 (82)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.5e-10 Score=98.13 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred CceeeecCCcEEEEEEEEe-cCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFS-IPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
....+.+|+.++|+|.+.| .|.| .+|+|+++|+++.......... ......+.|.|.....+|.|.|+|+|+|.
T Consensus 10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~----~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAP----APQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTT----CTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEee----cccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 3446889999999999987 3432 2799999999987532222111 11234567888888888888999999999
Q ss_pred CCCeEEEEEEEec
Q psy17146 714 YGSDSVEIMLKPQ 726 (1011)
Q Consensus 714 ~G~~~~~~~l~V~ 726 (1011)
+|.....+.+.+.
T Consensus 86 ~~~~~~~~~~~~s 98 (106)
T d1zxqa1 86 LMSRGGNIFHKHS 98 (106)
T ss_dssp CGGGTCCEEEEEC
T ss_pred CCCCCCeeEeccc
Confidence 9987777766663
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-10 Score=103.56 Aligned_cols=102 Identities=25% Similarity=0.313 Sum_probs=71.6
Q ss_pred EEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece--eEEEeeecCCceEEEEEEEEEeec
Q psy17146 126 LTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV--RVTEEASVDGRRTTVKSTLVLTPK 203 (1011)
Q Consensus 126 l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~--~~~~~~~~~~~~~~~~~~L~I~~~ 203 (1011)
|+|..| |.|...+.+.+.+|+.+.|.|.+....|.+.+.|++++..+.... ++......... ...+.|.|.++
T Consensus 2 L~V~~P---p~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~--~~~s~L~I~~v 76 (115)
T d2crya1 2 LTVNGP---PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE--GVISTLTISNI 76 (115)
T ss_dssp CCCCSS---CCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETT--EEEEEEECTTC
T ss_pred eEEecC---CEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeecccc--CcEEEEEEecc
Confidence 445543 456555667788999999999944335677899999999886533 23222222221 22358999999
Q ss_pred cCcC-CcEEEEEEEeCCCCceeEEEEEEEEEe
Q psy17146 204 KEHH-NTTFTCQAQNTADRTYKVARLKLLVKY 234 (1011)
Q Consensus 204 ~~~d-~G~Y~C~a~n~~g~~~~s~~v~v~v~~ 234 (1011)
..+| +|.|+|.|.|..|.+ +..+.|.|..
T Consensus 77 ~~~D~~G~Y~C~A~N~~G~~--~~~~~L~V~~ 106 (115)
T d2crya1 77 VRADFQTIYNCTAWNSFGSD--TEIIRLKEQG 106 (115)
T ss_dssp CHHHHHSCEEEEEECSSCEE--EEEECCCCSC
T ss_pred chhcCCeEEEEEEEECCCeE--EEEEEEEEEC
Confidence 9999 799999999999976 5666666643
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=7.6e-09 Score=93.18 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=66.3
Q ss_pred cCCceeEEecCcEEEEEEEcCC----CCeeEEeeCCeecC-----------CcccCCCCcceEEeecC-CCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK----TGVLQWTKDDFALG-----------PHRNLSGFDRYAMIGSD-EEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~----~~~v~W~k~~~~l~-----------~~~~~~~~~r~~i~~~~-~~~~~~L~I~~ 96 (1011)
+...+.+.+|++|+|+|.+... ...+.|++.+.... .........|..+..+. ..++++|+|.+
T Consensus 8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 87 (126)
T d1pkoa_ 8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN 87 (126)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence 4456999999999999998642 23689998753210 01111122455655443 45678999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
++.+|+|.|+|.+.+.. ...+..+.|+|.+|.
T Consensus 88 v~~~D~G~Y~C~v~~~~----~~~~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 88 VRFSDEGGYTCFFRDHS----YQEEAAVELKVEDPF 119 (126)
T ss_dssp CCGGGCEEEEEEEEETT----EEEEEEEEEEEECTT
T ss_pred EchhHCeEEEEEEEECC----CEEEEEEEEEEeCCC
Confidence 99999999999998753 345677889988753
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.3e-09 Score=89.90 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=58.3
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
...+++|+++.|.|. +.+ |.+.+.|++++..+....... ....+ +.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 6 ~~~~~~G~~~~l~C~-~~g-~~~~v~W~~~g~~l~~~~~~~-~~~~~-------~~L~I~~v~~~DsG~Y~C~A~n~~g~ 75 (92)
T d1olza1 6 QHFFKHGGTAELKCS-QKS-NLARVFWKFQNGVLKAESPKY-GLMGR-------KNLLIFNLSEGDSGVYQCLSEERVKN 75 (92)
T ss_dssp EEEEETTSCEEECCC-CSC-TTCEEEEEESSSBCCCCSSSB-CCTTT-------TCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred heeEeCCCEEEEEEE-eec-cCCceeeecCcccceeeeeee-eccee-------eEEEECCCCHHHCcEEEEEEEEcCCC
Confidence 456789999999999 566 667999999998886632211 11222 26999999999999999999999887
Q ss_pred ceeEEEE
Q psy17146 222 TYKVARL 228 (1011)
Q Consensus 222 ~~~s~~v 228 (1011)
...+..+
T Consensus 76 ~~~~~~l 82 (92)
T d1olza1 76 KTVFQVV 82 (92)
T ss_dssp SEEEEEE
T ss_pred EEEEEEE
Confidence 6444443
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.85 E-value=1.3e-09 Score=90.15 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=62.5
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
|.+...|....+.+|+.++|.|.+.+.|.+ .+.|+++|.. ....+..|.|.+++.+|+|.|+|+|.|. ..+..+.
T Consensus 5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~-~~~~~~~l~i~~v~~~dsG~Y~C~a~ns---~~S~~v~ 80 (85)
T d2fcba1 5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNL-IPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVH 80 (85)
T ss_dssp CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEE-CTTCCSSEEEEECCGGGCEEEEEECTTS---BCCCCEE
T ss_pred CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccc-ccccccceEEeeccccCCcEEEEECCCC---cccccEE
Confidence 456677888899999999999999999877 5778887744 3456789999999999999999999873 3344556
Q ss_pred EEE
Q psy17146 624 VYL 626 (1011)
Q Consensus 624 l~V 626 (1011)
|.|
T Consensus 81 l~V 83 (85)
T d2fcba1 81 LTV 83 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.6e-09 Score=89.82 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=61.5
Q ss_pred eeEEecCcEEEEE------EEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 37 QTAVVGSRVTLPC------RVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 37 ~~v~~G~~v~L~C------~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
+.+.+|+...|.| .+.+ +.+.+.|+||+.++... ..++.. .+ .+|.|.+++.+|+|.|+|.|
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~-----~~~~~~-~~-----~~L~I~~v~~~D~G~Y~C~a 77 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-----NIHFSG-VK-----DRLIVMNVAEKHRGNYTCHA 77 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCC-----SSSEEE-ET-----TEEEESSCCGGGCEEEEEEE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCC-----CcEEEe-cC-----CEEEEcccccccCcEEEEEE
Confidence 6789999999999 4444 56799999999887432 123332 22 26999999999999999999
Q ss_pred EeCCCCCcceeeeEEEEEEEcCC
Q psy17146 110 STGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|..++.....+..++|.|....
T Consensus 78 ~n~~~g~~~~vt~~i~~~v~~~~ 100 (103)
T d1iray2 78 SYTYLGKQYPITRVIEFITLEEN 100 (103)
T ss_dssp EEEETTEEEEEEEEEEEEEECCC
T ss_pred EECcCCEEEEEEEEEEEEECCCC
Confidence 98665543344556666666543
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.2e-09 Score=93.67 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=62.9
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+...+|+.+.|.|.+..+.|.++|.|+|++..+..... ...+.....++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~ 84 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE------QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC 84 (101)
T ss_dssp CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC------TTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc------cceEEeccCCEEEeccceecCCEEEEEEEECCCCe
Confidence 556778999999998556889999999998876543211 12222333358999999999999999999999887
Q ss_pred ceeEEEEEEEEE
Q psy17146 222 TYKVARLKLLVK 233 (1011)
Q Consensus 222 ~~~s~~v~v~v~ 233 (1011)
. ...+.|.|.
T Consensus 85 ~--~~~~~L~V~ 94 (101)
T d1iray1 85 L--RIKISAKFV 94 (101)
T ss_dssp E--EEEEEEEEE
T ss_pred E--EEEEEEEEE
Confidence 6 444555554
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1.2e-08 Score=89.31 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=71.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCC--eec-------CCcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDD--FAL-------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~--~~l-------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|.+... ...+.|||.. ... .........+|+.+..+.....++|+|.+++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 4667899999999999999998753 3468999853 111 0111123346888888777778999999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.+|+|.|.|.+.........+...-..|+|.+
T Consensus 82 ~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V~~ 113 (114)
T d3bp5a1 82 RNDSGIYLCGAISLHPKAKIEESPGAELVVTE 113 (114)
T ss_dssp GGGCEEEEEEEECSSSSCCCEECCCEEEEEEC
T ss_pred cCCCeEEEEEEEeCCCCcceEECcCeEEEEEE
Confidence 99999999998754332223344456666653
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4e-09 Score=91.23 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=56.7
Q ss_pred eeecCCCcEEEEEEccCCCC--CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 143 LYTTEDREIELECISANGKP--PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 143 ~~v~eg~~v~L~C~~~~g~P--~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
..+.+|+.++|+|.+.+++| .++++|+|++..+........ ........+.|+|.....+|+|.|+|+|.|..+
T Consensus 12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~----~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~ 87 (106)
T d1zxqa1 12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA----APAPQEATATFNSTADREDGHRNFSCLAVLDLM 87 (106)
T ss_dssp SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS----TTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE----eecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence 45778999999999777775 458999999988865433221 111223456889999899999999999999877
Q ss_pred Cc
Q psy17146 221 RT 222 (1011)
Q Consensus 221 ~~ 222 (1011)
..
T Consensus 88 ~~ 89 (106)
T d1zxqa1 88 SR 89 (106)
T ss_dssp GG
T ss_pred CC
Confidence 54
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=9.5e-10 Score=93.12 Aligned_cols=84 Identities=21% Similarity=0.147 Sum_probs=60.0
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCccc------CCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN------LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~------~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+++...+|++|+|.|.+..+.+.+.|++++..+..... ....+|..+ ...+++|+|.+++.+|+|.|+|+
T Consensus 3 ~~v~~~~G~sVtl~c~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~sL~I~~l~~~DsG~Y~c~ 78 (93)
T d1ccza1 3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL----DTVSGSLTIYNLTSSDEDEYEME 78 (93)
T ss_dssp EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE----CTTTCCEEECSCCGGGCEEEEEE
T ss_pred cEEEEEECCCEEEEecCCCCCcEEEEEEeccccceeeecceeeCCCccceEEE----cCCeeEEEEEecChhhCEEEEEE
Confidence 46789999999999998888889999999876532110 111133333 23456899999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEE
Q psy17146 109 VSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V 128 (1011)
+.+.. .+..+.|+|
T Consensus 79 ~~n~~------~t~~~~l~V 92 (93)
T d1ccza1 79 SPNIT------DTMKFFLYV 92 (93)
T ss_dssp CTTCC------SCEEEEEEE
T ss_pred EECCC------cEEEEEEEE
Confidence 97642 244466665
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.74 E-value=6e-09 Score=90.80 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=57.3
Q ss_pred eEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCce-------------eecCCCcEEEeecCCCCCE---EEEEEEEecCC
Q psy17146 553 SVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDK-------------VVGNSPNLTLLMTSDDLAG---RYYCKASVMGF 615 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~-------------~~~~~~~L~I~~v~~~d~G---~Y~C~a~n~~~ 615 (1011)
+..+.+|++++|.|.+ .|.|.|.+.|+|++..+ ....+++|.|.+++.+|+| .|+|.|.| ..
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N-~~ 89 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN-AA 89 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEEC-TT
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEe-CC
Confidence 4567899999999986 99999999999987443 2345689999999998876 79999999 45
Q ss_pred CceeeEEEEEE
Q psy17146 616 PEVGAEATVYL 626 (1011)
Q Consensus 616 ~~~s~~~~l~V 626 (1011)
+.....+.+.+
T Consensus 90 g~~~~~~~~~~ 100 (111)
T d1biha2 90 VDEEVVLVEYE 100 (111)
T ss_dssp CSSCEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 55555543333
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=9.7e-09 Score=86.67 Aligned_cols=84 Identities=10% Similarity=0.198 Sum_probs=58.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc----CccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL----KEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
......|++|+|.|.+ +.|.+ .|.|++++..+............... .....++|+|.+++.+|+|.|+|.|.|
T Consensus 4 ~v~~~~G~sVtl~c~~-~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n 81 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPS-NVPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (93)
T ss_dssp EEEEETTCCEEECCCC-SSCCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEEEECCCEEEEecC-CCCCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence 3467899999999986 45777 89999999877532222221111000 012346899999999999999999999
Q ss_pred CCCCeEEEEE
Q psy17146 713 PYGSDSVEIM 722 (1011)
Q Consensus 713 ~~G~~~~~~~ 722 (1011)
..++.+..++
T Consensus 82 ~~~t~~~~l~ 91 (93)
T d1ccza1 82 ITDTMKFFLY 91 (93)
T ss_dssp CCSCEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9886654443
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=8.2e-09 Score=89.13 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=60.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------c-----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------R-----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~-----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+++++....+.+|++|+|+|.... ....+.|+|+....... . .-...+|..+..+ .+|+|.
T Consensus 2 vti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n-----gSL~I~ 76 (107)
T d1l6za1 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-----GSLLFQ 76 (107)
T ss_dssp CEEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT-----SCEEEC
T ss_pred cEEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc-----ccEEEc
Confidence 345555556889999999998544 34489999965332100 0 0112357777543 489999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+++.+|+|.|+|++.+... ...+..+.|.|
T Consensus 77 ~v~~~D~G~Y~c~v~~~~~---~~~~~~v~L~V 106 (107)
T d1l6za1 77 MITMKDMGVYTLDMTDENY---RRTQATVRFHV 106 (107)
T ss_dssp SCCGGGCEEEEEEEEETTE---EECCCCEEECC
T ss_pred CCCchhCEEEEEEEEECCC---CEEEEEEEEEE
Confidence 9999999999999987542 22344456655
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.7e-08 Score=89.17 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=66.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCCeecC---------------CcccCCCCcceEEeecC-CCc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDDFALG---------------PHRNLSGFDRYAMIGSD-EEG 88 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~~~l~---------------~~~~~~~~~r~~i~~~~-~~~ 88 (1011)
++.+...+.+.+|++|+|+|.+.... ..+.|++...... ........+|..+..+. ..+
T Consensus 7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 86 (124)
T d1eaja_ 7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG 86 (124)
T ss_dssp ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence 34444568999999999999987531 2589987432111 00011223577776543 446
Q ss_pred eeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.++|+|.+++.+|+|.|.|.+.+.. +..+..+.|+|.+
T Consensus 87 ~~sL~I~~v~~~D~G~Y~C~v~~~~----~~~~~~~~L~V~V 124 (124)
T d1eaja_ 87 DASINVTNLQLSDIGTYQCKVKKAP----GVANKKIHLVVLV 124 (124)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETT----EEEEEEEEEEEEC
T ss_pred EEEEEEcccEEccCEEEEEEEEECC----CeEEeEEEEEEEC
Confidence 7899999999999999999998753 4567778888763
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.9e-08 Score=86.08 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=67.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC----CCeeEEeeCCeec--------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK----TGVLQWTKDDFAL--------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~----~~~v~W~k~~~~l--------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.|+.+.+.+|++|+|+|..... ...+.|+|....- ..........|..+..+...+.++|+|.+++.+
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~ 84 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 84 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence 5788999999999999998643 2257898754221 111122234677777777888999999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
|+|.|.|.+.....+ ....+.|+|.+..
T Consensus 85 DsG~Y~C~v~~~~~~----~~~~v~L~V~~~~ 112 (116)
T d1xeda_ 85 DSGRYKCGLGINSRG----LSFDVSLEVLEHH 112 (116)
T ss_dssp GCEEEEEEESCGGGC----CEEEEEEEEECCC
T ss_pred CCEEEEEEEEcCCCC----ceEeEEEEEECCC
Confidence 999999998654322 2334778887643
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.64 E-value=2.9e-08 Score=86.05 Aligned_cols=83 Identities=22% Similarity=0.421 Sum_probs=64.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
+...|..+++.+|++|+|.|.+.+. ...+.||+....-.....+...+|+....+.....++|+|.+++.+|+|.|.
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence 5667899999999999999998653 3579999854322223344455678777666677889999999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.+...
T Consensus 82 CA~~~~ 87 (112)
T d1sq2n_ 82 CGLGVA 87 (112)
T ss_dssp EEECBT
T ss_pred EEEecC
Confidence 988653
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=6e-08 Score=87.06 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=64.4
Q ss_pred cCCceEEEcCCCcEEEEEEEecCC---CCeEEEEecCCcee------------------------e-----cCCCcEEEe
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNP---APEITWIHEDSDKV------------------------V-----GNSPNLTLL 596 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~k~~~~~~------------------------~-----~~~~~L~I~ 596 (1011)
.+...+.+.+|++++|.|.+.... ...+.|++.+.... . ..+.+|+|.
T Consensus 7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 86 (126)
T d1pkoa_ 7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQ 86 (126)
T ss_dssp CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEES
T ss_pred CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEE
Confidence 344458899999999999986433 33699998753210 0 113589999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH 635 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~ 635 (1011)
+++.+|+|.|+|.+.+ ..+..+..+.|.|.+|+.+..|
T Consensus 87 ~v~~~D~G~Y~C~v~~-~~~~~~~~v~L~V~~P~~~~~p 124 (126)
T d1pkoa_ 87 NVRFSDEGGYTCFFRD-HSYQEEAAVELKVEDPFYWINP 124 (126)
T ss_dssp SCCGGGCEEEEEEEEE-TTEEEEEEEEEEEECTTTTSST
T ss_pred EEchhHCeEEEEEEEE-CCCEEEEEEEEEEeCCCEEeCC
Confidence 9999999999999998 5677888899999988776543
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=4e-08 Score=87.27 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=64.7
Q ss_pred eecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCee------cC--------CcccCCCCcceEEeecCCCceeE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFA------LG--------PHRNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~------l~--------~~~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
...|.++.+..|++|+|+|.+... ...+.|++.... +. ....-...+|+.+..+...++++
T Consensus 3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 82 (119)
T d1neua_ 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS 82 (119)
T ss_dssp EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence 446788999999999999998642 227899874311 00 00011123577777666667789
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|+|.+++.+|+|.|.|.+.+.... ......+.|.|.
T Consensus 83 L~I~~v~~~DsG~Y~C~v~~~~~~--~~~~~~v~L~V~ 118 (119)
T d1neua_ 83 IVIHNLDYSDNGTFTCDVKNPPDI--VGKTSQVTLYVF 118 (119)
T ss_dssp EEECSCCGGGCEEEEEEEEC------CCEEEEEEEEEE
T ss_pred EEECCCChHHCEEEEEEEEECCCc--CceEEEEEEEEE
Confidence 999999999999999999864221 123445667665
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.62 E-value=3.5e-08 Score=86.63 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=62.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeC--CeecC-------Ccc--cCCCCcceEEeecCCCceeEEEEe
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKD--DFALG-------PHR--NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~--~~~l~-------~~~--~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+++..|..+.+.+|++|+|.|.... ....+.|||. +.... ... .-...+|+.+..+.....++|+|.
T Consensus 2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (116)
T d1tvda_ 2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS 81 (116)
T ss_dssp EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence 3567789999999999999999865 3457999973 22210 000 011235888877777778899999
Q ss_pred ecccCCCceEEEEEEeC
Q psy17146 96 PVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~ 112 (1011)
+++.+|+|.|.|.+...
T Consensus 82 ~~~~~Dsg~YyCa~~~~ 98 (116)
T d1tvda_ 82 PVRTEDSATYYCAFTLP 98 (116)
T ss_dssp SCCGGGCEEEEEEEECT
T ss_pred CccccccccceeeEecC
Confidence 99999999999988754
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9e-08 Score=82.96 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=58.1
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee-----c---CCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA-----L---GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~-----l---~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
++.+.+.+|++|+|+|..... ...+.|+|.... + .........+|+.+..+...+.++|+|.+++.+|+
T Consensus 3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds 82 (108)
T d1hkfa_ 3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS 82 (108)
T ss_dssp CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence 456889999999999997653 235789985321 1 11112223367877777778899999999999999
Q ss_pred ceEEEEEEeC
Q psy17146 103 ARYQCQVSTG 112 (1011)
Q Consensus 103 G~Y~C~~~~~ 112 (1011)
|.|.|.+...
T Consensus 83 G~Y~C~v~~~ 92 (108)
T d1hkfa_ 83 GHYWCRIYRP 92 (108)
T ss_dssp EEEEEEEECT
T ss_pred EEEEEEEecC
Confidence 9999998754
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.61 E-value=5.5e-08 Score=85.22 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=66.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCC--eecC-------CcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDD--FALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~--~~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.++..|..+.+.+|++|+|.|..... ...+.|||.. ..+. ....-....|..+........++|+|.++
T Consensus 2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (114)
T d2ak4d1 2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS 81 (114)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence 46777899999999999999997653 3368899843 2210 00001112355565555667889999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+.+|+|.|.|.+.............-..|+|.
T Consensus 82 ~~~Dsg~YyCa~~~~~~~~~l~FG~GT~L~V~ 113 (114)
T d2ak4d1 82 QVVDSAVYFCALSGFYNTDKLIFGTGTRLQVF 113 (114)
T ss_dssp CGGGCEEEEEEEECSBTTSCCEECCCEEEEEE
T ss_pred ccccCCCceEeCCCCCCCCcCEECCCEEEEEE
Confidence 99999999998876433222122223456553
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.61 E-value=4.5e-08 Score=85.34 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=64.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
++..|..+.+.+|++|+|.|.+.+. ...+.||+....-.....+...+|+.+..+.....++|+|.+++.+|+|.|.
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 5677899999999999999999753 3468999754322222334455788877776777889999999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.+...
T Consensus 83 Ca~~~~ 88 (113)
T d1vesa_ 83 CQAFYS 88 (113)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 998653
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.4e-08 Score=84.75 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=52.4
Q ss_pred ceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCC--------cccCCCCcceEEeecC-CCceeEEEEeecccCCCceE
Q psy17146 36 DQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+...+|++|+|+|..... ...+.|++....... .......+|+....+. ..++++|+|.+++.+|+|.|
T Consensus 3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y 82 (97)
T d2nxyb1 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (97)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence 3567899999999998864 447999987532210 0011122455443222 45678999999999999999
Q ss_pred EEEEEe
Q psy17146 106 QCQVST 111 (1011)
Q Consensus 106 ~C~~~~ 111 (1011)
.|.+.+
T Consensus 83 ~C~v~~ 88 (97)
T d2nxyb1 83 ICEVED 88 (97)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 999965
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=6.6e-08 Score=81.87 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=59.3
Q ss_pred eeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccC--------CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 638 QFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGS--------SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~--------~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
.....|+.|+|.|.... ......|.|+|++..+..-. ..++.+.. .++|+|.+++.+|+|.|+|
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~-------ngSL~I~nl~~~DsG~Y~c 77 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-------NGDLKIKNLTRDDSGTYNV 77 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT-------TSCEEESSCCGGGCEEEEE
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC-------CccEEEeCCCHHHCEEEEE
Confidence 45678999999996432 22222799999988775311 12222222 3689999999999999999
Q ss_pred EEEcCCCCe--EEEEEEEec
Q psy17146 709 SVSNPYGSD--SVEIMLKPQ 726 (1011)
Q Consensus 709 ~a~N~~G~~--~~~~~l~V~ 726 (1011)
.+.|..|.. ++.+.|.|.
T Consensus 78 ~v~~~~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 78 TVYSTNGTRILNKALDLRIL 97 (98)
T ss_dssp EEEETTCCEEEEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEEEEEE
Confidence 999999976 667777764
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.53 E-value=2.3e-07 Score=81.08 Aligned_cols=84 Identities=29% Similarity=0.389 Sum_probs=63.6
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+++..|..+.+.+|++|+|.|.... ....+.||+....-. ........+|+....+.....++|+|.+++.
T Consensus 2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~ 81 (114)
T d2cdea1 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 81 (114)
T ss_dssp CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence 3567789999999999999999876 445799998542111 1112222367777766677889999999999
Q ss_pred CCCceEEEEEEeC
Q psy17146 100 DDDARYQCQVSTG 112 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~ 112 (1011)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 82 SDSASYICVVSDR 94 (114)
T ss_dssp GGCSEEEEEEECS
T ss_pred hhCcccceeeecC
Confidence 9999999999764
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.2e-07 Score=80.40 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCc
Q psy17146 132 PDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209 (1011)
Q Consensus 132 p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 209 (1011)
|..|.|..... +.+|+.++|.|.+.+++|.+ +|.|++++..+...... ............+.|++.....+|+.
T Consensus 2 P~~P~I~~~~~--l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~--~~~~~~~~~~~~s~l~~~~~~~D~g~ 77 (109)
T d1vcaa1 2 PKDPEIHLSGP--LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL--EDADRKSLETKSLEVTFTPVIEDIGK 77 (109)
T ss_dssp CSCCEEEESSC--EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC--SCCSSCCCEEEEEEEEECCCGGGTTC
T ss_pred CCCCEEecCCC--ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccc--cccccCCcceeeEEEEccCChHHCCc
Confidence 44566655443 56899999999988899965 79999988776542221 11223335566678999888888888
Q ss_pred EEEEEEEeCCCCc-----eeEEEEEEEEEeCC
Q psy17146 210 TFTCQAQNTADRT-----YKVARLKLLVKYAP 236 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~-----~~s~~v~v~v~~~P 236 (1011)
.|+|+|++..+.. .++....|.|.+.|
T Consensus 78 ~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 78 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 109 (109)
T ss_dssp EEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred EEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence 9999999987653 24556667777665
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.53 E-value=1.7e-07 Score=81.69 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=62.9
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCC-CeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~-~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|.+.... ..+.|||.. .... ........+|+.+........++|+|.+++.
T Consensus 2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (113)
T d2bnqd1 2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP 81 (113)
T ss_dssp CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence 467789999999999999999998743 478999843 2110 1111122356776666677889999999999
Q ss_pred CCCceEEEEEEeC
Q psy17146 100 DDDARYQCQVSTG 112 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~ 112 (1011)
+|+|.|.|.+...
T Consensus 82 ~Dsg~YyCa~~~~ 94 (113)
T d2bnqd1 82 GDSATYLCAVRPT 94 (113)
T ss_dssp GGCEEEEEEEEES
T ss_pred CCCcEEeEeEecC
Confidence 9999999998754
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.52 E-value=2.3e-07 Score=80.77 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=65.5
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC-----CcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG-----PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~-----~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.+...|..+.+.+|++|+|.|........+.|||.. ..+. .....................++|+|.+++.+|
T Consensus 3 ~V~Q~P~~~~v~~G~~vtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 82 (113)
T d1h5ba_ 3 QVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED 82 (113)
T ss_dssp SEEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred CeEECCCEEEEcCCCCEEEEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence 466778999999999999999998766789999853 1110 000001111222233334566789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+|.|.|.+.........+.-.-..|+|.
T Consensus 83 sa~YyCa~~~~~~~~~~~FG~GT~L~V~ 110 (113)
T d1h5ba_ 83 SGTYFCAAEASSGSWQLIFGSGTQLTVM 110 (113)
T ss_dssp CEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred CEEEEEEecCCCCCCeeEECcCEEEEEE
Confidence 9999999875432222233334566665
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=1e-07 Score=84.30 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=65.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-------CeeEEeeCCeecC------C---cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-------GVLQWTKDDFALG------P---HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-------~~v~W~k~~~~l~------~---~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|+.+.+.+|++|+|+|.+..+. ..+.|++...... . .......+|+.+..+...++++|+|.+
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 47889999999999999987431 1456877543211 0 011123468888877677889999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
++.+|+|.|.|++...... .-.....+.|+|.
T Consensus 86 v~~~DsG~Y~C~v~~~~~~-~~~~~~~~~ltVt 117 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEISDSN-RWLDVKGTTVTVT 117 (118)
T ss_dssp CCGGGCEEEEEEEECC-CC-EEECSSCEEEEEE
T ss_pred CChhHCEEEEEEEEeCCCC-eEEcCCCEEEEEe
Confidence 9999999999999765322 2222344566653
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.51 E-value=1.8e-07 Score=81.03 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=61.0
Q ss_pred CCceeEEecCcEEEEEEEcCC--CCeeEEeeCC--eecC----CcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDD--FALG----PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~--~~l~----~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.++.+.+|++|+|.|..... ...+.|||.. ..+. ....-....+..+..+.....++|+|.+++.+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 568999999999999998753 3468999853 2110 0001111234444455566788999999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.|.+...........-.-..|+|.
T Consensus 85 yCa~~~~~~~~~~~FG~GT~L~V~ 108 (110)
T d2esvd1 85 YCIVVRSSNTGKLIFGQGTTLQVK 108 (110)
T ss_dssp EEEEEESCSSCCCCCCCCEEEEEE
T ss_pred EEEEeCCCCCCccEECCCEEEEEE
Confidence 999865322211111223556664
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.51 E-value=3.1e-07 Score=80.03 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=69.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeec--------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFAL--------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l--------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.++..|..+.+.+|++|+|.|........+.||+....- .........+|+.+..+.....++|+|.+++.+
T Consensus 2 ~l~Q~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (115)
T d1ogad1 2 LLEQSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG 81 (115)
T ss_dssp CCEEECSEEEEETTCCEEEEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred ceEeCCCeEEECCCCCEEEEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence 356678899999999999999988766689999854211 111112223566666666777899999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|+|.|.|.+..... ..+.-.-..|+|.
T Consensus 82 Dsa~YyCa~~~~~~--~~~FG~GT~LtV~ 108 (115)
T d1ogad1 82 DTGLYLCAGAGSQG--NLIFGKGTKLSVK 108 (115)
T ss_dssp GCEEEEEEEECTTS--SEEECCCEEEEEE
T ss_pred ceeeEcccccCCCC--CcEECCCEEEEEe
Confidence 99999998764321 1222334677776
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=4.9e-08 Score=86.87 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=57.3
Q ss_pred cCCceeEEecCcEEEEEEEcCCC--------CeeEEeeCCeecCCc---------c--cCCCCcceEEeecCCCceeEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT--------GVLQWTKDDFALGPH---------R--NLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~--------~~v~W~k~~~~l~~~---------~--~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
.|.++++.+|++|+|+|.+..+. ..+.|++....-... . .-...+|+.+..+...++++|+
T Consensus 7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (121)
T d2g5ra1 7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS 86 (121)
T ss_dssp CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence 36789999999999999986431 157898875321100 0 0112358888776667789999
Q ss_pred EeecccCCCceEEEEEEeC
Q psy17146 94 IYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~ 112 (1011)
|.+++.+|+|.|.|++..+
T Consensus 87 I~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 87 IRDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp ECSCCGGGCEEEEEEEEET
T ss_pred ECCCChHHCEEEEEEEEeC
Confidence 9999999999999999764
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.49 E-value=2.8e-07 Score=80.52 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=61.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|.... ....+.|||.... + ..........|+.+..+.....+.|+|.+++.+
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 556688899999999999999886 4457999986421 1 111112223567776665666788999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+...
T Consensus 84 Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 84 DSALYYCALFLA 95 (115)
T ss_dssp GCEEEEEEEEEC
T ss_pred cCccceEEEEcC
Confidence 999999988653
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.46 E-value=6.9e-08 Score=81.74 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred eeeecCCCcEEEEEEccCCC-CCcEEEEEeCCceeeeceeEEEeeecCCc-eEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 142 TLYTTEDREIELECISANGK-PPAEITWIDGTGTVMSNVRVTEEASVDGR-RTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~-P~~~i~W~k~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+....|+++.|.|...... ....|.|+|++..+..-.........+.+ .....++|+|.+++.+|+|.|+|++.+..
T Consensus 4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~ 83 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 83 (98)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence 45667799999999632222 33579999988766441111111122222 11222579999999999999999999999
Q ss_pred CCceeEEEEEEEEE
Q psy17146 220 DRTYKVARLKLLVK 233 (1011)
Q Consensus 220 g~~~~s~~v~v~v~ 233 (1011)
|....+..+.|.|.
T Consensus 84 g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 84 GTRILNKALDLRIL 97 (98)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEE
Confidence 98766778888775
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.45 E-value=2.5e-07 Score=79.38 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=58.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC-CeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~-~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+++.+|++|+|.|...... ..+.|||....-. ....-...+|+.... ....++|+|.+++.+
T Consensus 4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~ 81 (107)
T d1ospl1 4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD--SGKDYTLSITSLQTE 81 (107)
T ss_dssp EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSSEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec--CCCeEEeEEcccccc
Confidence 55678999999999999999987643 4699998542111 111222336777654 345689999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+...
T Consensus 82 Dsa~YyCa~~~~ 93 (107)
T d1ospl1 82 DVATYFCQQYWS 93 (107)
T ss_dssp GCSEEEEEECSS
T ss_pred cCCcEEEeeccC
Confidence 999999987643
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=3.3e-07 Score=78.45 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=57.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.|||.. .... ........+|+..... ...++|+|.+++.+
T Consensus 4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~--~~~~~L~I~~~~~~ 81 (106)
T d1i8ka_ 4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT--GTDFVFTIENTLSE 81 (106)
T ss_dssp EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCC--CCeeeecccCCccc
Confidence 5567889999999999999998753 3479999753 2210 1111223357666443 35789999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+...
T Consensus 82 Dsa~YyCa~~~~ 93 (106)
T d1i8ka_ 82 DVGDYYCLQSFN 93 (106)
T ss_dssp GCEEEEEEECSS
T ss_pred cCEEEeEecCcc
Confidence 999999987653
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=3.2e-07 Score=80.98 Aligned_cols=84 Identities=18% Similarity=0.380 Sum_probs=59.1
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeC--CeecCC----------------cccCCCCcceEEeecCCC
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKD--DFALGP----------------HRNLSGFDRYAMIGSDEE 87 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~--~~~l~~----------------~~~~~~~~r~~i~~~~~~ 87 (1011)
+|.+...|..+.+.+|++|+|.|.+.. ....+.|+|. +..+.. ...+....|+..... ..
T Consensus 1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~ 79 (122)
T d1nezg_ 1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD-TN 79 (122)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE-TT
T ss_pred CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECC-CC
Confidence 367888999999999999999999876 4557999973 222100 001111234443332 34
Q ss_pred ceeEEEEeecccCCCceEEEEEEe
Q psy17146 88 GDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
..++|+|.+++.+|+|.|.|.+..
T Consensus 80 ~~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 80 NKYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CEeEEEEcccccCCCEEEEeeEeC
Confidence 568999999999999999999864
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.43 E-value=5.2e-07 Score=78.98 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=66.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecC--------Cccc----CCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALG--------PHRN----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~--------~~~~----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
+...|..+++.+|++|+|.|.+.+. ...+.||+....-. .... -...+|+.+..+.....+.|+|
T Consensus 4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I 83 (120)
T d1ypzf1 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (120)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence 5556678899999999999998753 34689998542110 0000 1233688887777778889999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+++.+|+|.|.|.......+...+.-.-..|+|.
T Consensus 84 ~~l~~~Dsa~YyCA~~~~~~~~~~~FG~GT~LtV~ 118 (120)
T d1ypzf1 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVI 118 (120)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred cccccccceeEEEEEcCCCCCcccEECCCeEEEEE
Confidence 99999999999998754332221222223456664
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=2e-07 Score=79.74 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=56.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--eec------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FAL------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.|+|.. ... .........+|+....+ ...+.|+|.+++.+
T Consensus 4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~l~~~ 81 (107)
T d1c5cl1 4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRS--GSDYSLTISSLESE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGG
T ss_pred EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEeccc--CCEEEEEEhhhccc
Confidence 5567889999999999999998864 3468999853 221 01112222345555433 35789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d1c5cl1 82 DFADYYCLQYA 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred CCeEEEEecCc
Confidence 99999998754
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.42 E-value=2.9e-07 Score=80.00 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=59.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC-CeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT-GVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~-~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|...... ..+.||+.. .... .........|.....+.....++|+|.+++.+
T Consensus 2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 45678899999999999999987643 468999863 1110 00111112455555555567789999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+...
T Consensus 82 Dsa~YyCa~~~~ 93 (110)
T d1u3ha1 82 DSATYFCAASAN 93 (110)
T ss_dssp SCSEEEECCEES
T ss_pred CceeEeeeecCC
Confidence 999999998643
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.40 E-value=4.4e-07 Score=79.40 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=58.6
Q ss_pred eecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCee-----c---C---Cc-----ccCCCCcceEEeecCCCceeEE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFA-----L---G---PH-----RNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~-----l---~---~~-----~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
...|..+.+.+|++|+|.|.+.. ....+.|++.... + . .. ..-...+|+.+..+.....++|
T Consensus 2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (115)
T d2atpb1 2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL 81 (115)
T ss_dssp EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence 35688899999999999999876 3347899975321 1 0 00 0011234666666666778899
Q ss_pred EEeecccCCCceEEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+|.+++.+|+|.|.|.+..
T Consensus 82 ~I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 82 SIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp EECSCCGGGCEEEEEEEEC
T ss_pred eecccCCCCCcEEEEeEcC
Confidence 9999999999999998864
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.40 E-value=8.2e-07 Score=76.31 Aligned_cols=80 Identities=30% Similarity=0.469 Sum_probs=57.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCe--ecC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDF--ALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~--~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+... ... ........+|+....+ ...+.|+|.+++.+
T Consensus 4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~l~~~ 81 (107)
T d1kcvl1 4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGS--ATDFTLTISSVQAD 81 (107)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGG
T ss_pred EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeecc--CCeeecEEHhheec
Confidence 5567889999999999999998864 34699997532 110 1111112356665543 46789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 82 DSa~YyCa~~~ 92 (107)
T d1kcvl1 82 DDADYYCGQSY 92 (107)
T ss_dssp GCEEEEEEECS
T ss_pred CCceEEEEecC
Confidence 99999998754
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.8e-07 Score=81.61 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=61.1
Q ss_pred ceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecC--------C-cccC--CCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 36 DQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALG--------P-HRNL--SGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~--------~-~~~~--~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
...+.+|++|+|.|.+.. ....+.|+|....-. . .... ...+|+.+..+...+.++|+|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 467789999999999864 345789998532110 0 0001 1125888887777788999999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+|.|.|.+...... .......+.|.|
T Consensus 88 sg~Y~Cav~~~~~~-~~~~~~~~~L~V 113 (113)
T d1smoa_ 88 SGLYQCVIYQPPKE-PHMLFDRIRLVV 113 (113)
T ss_dssp CEEEEEEECCTTSC-CEECSCEEEEEC
T ss_pred CceEEEEEECCCCC-CEEEECCEEEEC
Confidence 99999998654322 223334455543
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.40 E-value=6.5e-07 Score=76.85 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=58.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|.... ....+.|||.... + .....-...+|+....+ ...++|+|.+++.+
T Consensus 4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~--~~~~~L~I~~~~~~ 81 (107)
T d1j1pl_ 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS--GTDFTLSINSVETE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGG
T ss_pred EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceeccc--CCEEEEEEcccCcC
Confidence 566788999999999999999875 3446999976421 1 01111122356666543 46789999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+.+.
T Consensus 82 Dsa~YyCa~~~~ 93 (107)
T d1j1pl_ 82 DFGMYFCQQANS 93 (107)
T ss_dssp GCEEEEEEECSS
T ss_pred CCEEEEEEcCCC
Confidence 999999987543
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.39 E-value=7.5e-07 Score=77.24 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=61.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.+...|..+.+.+|++|+|.|..... ...+.||+.. .... ........+|+....+.....++|.|.+++.
T Consensus 2 ~v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (111)
T d1bd2d1 2 QVKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP 81 (111)
T ss_dssp CEECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred ceEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence 46677889999999999999998763 3468899853 2110 1111112357777666667789999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 82 GDSAVYFCAAME 93 (111)
T ss_dssp GGCEEEEEEEES
T ss_pred cccEEEEeeccC
Confidence 999999998864
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=3.5e-07 Score=78.71 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=53.9
Q ss_pred ceeEEecCcEEEEEEEcCCCC-----eeEEeeCCeecCCccc----C--CCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 36 DQTAVVGSRVTLPCRVIDKTG-----VLQWTKDDFALGPHRN----L--SGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~~~-----~v~W~k~~~~l~~~~~----~--~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+++..|++|+|+|....... .+.|.+++..+..... . ....|..+.. .++++|+|.+++.+|+|.
T Consensus 3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~---~g~~sL~I~~v~~~D~G~ 79 (105)
T d1dr9a1 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRPSDEGT 79 (105)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCGGGCEE
T ss_pred EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc---CCcEEEEECcCChHHCeE
Confidence 468899999999999876432 5788888755421110 0 1124655543 356799999999999999
Q ss_pred EEEEEEeCCCC
Q psy17146 105 YQCQVSTGILG 115 (1011)
Q Consensus 105 Y~C~~~~~~~~ 115 (1011)
|.|.+.+...+
T Consensus 80 Y~C~V~~~~~~ 90 (105)
T d1dr9a1 80 YECVVLKYEKD 90 (105)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEeCCCC
Confidence 99999865443
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.8e-07 Score=81.60 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=59.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCC--------------cccCCCCcceEEeecCCCceeEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGP--------------HRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~--------------~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+++.|.+.++.+|++|+|.|.+... ...+.|+|....-.. ........|+....+ ...++|
T Consensus 2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~--~~~~~L 79 (114)
T d1akjd_ 2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRL--GDTFVL 79 (114)
T ss_dssp CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEE--TTEEEE
T ss_pred CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECC--CCChhc
Confidence 36788999999999999999998763 346899985421110 001112246665544 357899
Q ss_pred EEeecccCCCceEEEEEEeC
Q psy17146 93 EIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
+|.+++.+|+|.|.|.+...
T Consensus 80 ~I~~l~~~Dsg~YyCa~~~~ 99 (114)
T d1akjd_ 80 TLSDFRRENEGYYFCSALSN 99 (114)
T ss_dssp EESSCCGGGCEEEEEEEEET
T ss_pred EEccCCCCCCEEEeEeEcCC
Confidence 99999999999999998753
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6e-07 Score=75.04 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=64.1
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+..+|.. .|..|++|+|.|........+.|+|++.......... ........+.|.+|+.+|+|.|+
T Consensus 4 KPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~---------~~~~~~a~F~i~~v~~~~~G~Y~ 73 (95)
T d1olla1 4 KPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKP---------PERINKVKFYIPDMNSRMAGQYS 73 (95)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSS---------CTTCCEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeCCC-cccCCCcEEEEEecCCCccEEEEEECCCCcceeEEcc---------CCCccEEEEEEeeeecCCCceEE
Confidence 3667788866 4789999999999887777999999985432111000 01223457999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|...+... ....|..+.|.|.
T Consensus 74 C~y~~~~~--~S~~Sd~leL~VT 94 (95)
T d1olla1 74 CIYRVGEL--WSEPSNLLDLVVT 94 (95)
T ss_dssp EEEEETTE--ECCCCCCEEEEEE
T ss_pred EEeCCCCC--ccCCCCCEEEEEe
Confidence 99876422 2345677777775
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.38 E-value=6.8e-07 Score=78.18 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=60.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCe--ecC-------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDF--ALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~--~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|..... ...+.|||... .+. ....-...+|+.+..+.....++|+|.+++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 5667889999999999999998653 33688998531 110 011111225777776666677899999999
Q ss_pred cCCCceEEEEEEeC
Q psy17146 99 LDDDARYQCQVSTG 112 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~ 112 (1011)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 82 IEDSAVYFCAMRGD 95 (115)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccccccccceeecC
Confidence 99999999998643
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.1e-07 Score=77.81 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=63.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+...|.. .|..|++|+|.|....+...+.|+|++....... .............+.|.+|+.+|+|.|+
T Consensus 7 kPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~-------~~~~~~~~~~~a~F~l~~vt~~~~G~Y~ 78 (99)
T d1ucta1 7 MPFISAKSSP-VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI-------GRRLKFWNETDPEFVIDHMDANKAGRYQ 78 (99)
T ss_dssp CCCEEESSCS-EEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC-------SEECC----CCCEEEECSCCGGGCEEEE
T ss_pred CCEEEecCCC-ceeCCCeEEEEEcCCCCCcEEEEEECCCcCceec-------cccccCCCCceEEEEecCCCHHHCceEE
Confidence 4778888875 5889999999999887777999999874321110 0000111233457999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|...+.. .....|..+.|.|
T Consensus 79 C~y~~~~--~~S~~Sdpl~L~V 98 (99)
T d1ucta1 79 CQYRIGH--YRFRYSDTLELVV 98 (99)
T ss_dssp EEEEETT--TEEEECCCEEEEE
T ss_pred EEEECCC--cccCCCCCEEEEe
Confidence 9987643 2334667777776
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.37 E-value=3.6e-07 Score=78.38 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=58.6
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.|++....-. ........+|+.... ....+.|+|.+++.
T Consensus 3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~ 80 (107)
T d1tjgl1 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG--SGTEFTLTISTLRP 80 (107)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec--cCCEEEEEecccee
Confidence 35677899999999999999999864 45899998542111 111122235666543 34678999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|....
T Consensus 81 ~DsA~YyCa~~~ 92 (107)
T d1tjgl1 81 EDFATYYCQQLH 92 (107)
T ss_dssp GGCSEEEEEECS
T ss_pred CcCceEEEEECc
Confidence 999999997654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.37 E-value=3.6e-07 Score=79.90 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=59.7
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--eecC-------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
.++..|..+.+.+|++|+|+|..... ...+.||+.. ..+. ........+|+..........+.|+|.+++
T Consensus 2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1j8hd1 2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH 81 (115)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence 35677889999999999999998764 4479999853 1110 001111224555555445566789999999
Q ss_pred cCCCceEEEEEEeC
Q psy17146 99 LDDDARYQCQVSTG 112 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~ 112 (1011)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 82 MSDAAEYFCAVSES 95 (115)
T ss_dssp GGGCEEEEEEEESS
T ss_pred ccCCccceeeecCC
Confidence 99999999999764
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.36 E-value=7.6e-07 Score=77.31 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=62.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCe--ecC---------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDF--ALG---------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~--~l~---------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|........+.||+... .+. ....-....++.... .....+.|+|.+++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~ 80 (112)
T d2bnub1 2 VTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR-STTEDFPLRLLSAA 80 (112)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC-SSSSBCCEEESSCC
T ss_pred eEECCCeEEECCCCCEEEEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEec-CCCCEEEEEECCCC
Confidence 456688889999999999999887777899997532 110 000011123333332 33445689999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+|+|.|.|.+...........-.-..|+|.
T Consensus 81 ~~DsavYyCA~~~~~~~~~~~FG~GT~LtVl 111 (112)
T d2bnub1 81 PSQTSVYFCASSYVGNTGELFFGEGSRLTVL 111 (112)
T ss_dssp GGGCEEEEEEEECSSTTCCCEECCCEEEEEE
T ss_pred HHHCEEEEEeecCCCCCCccEECCCEEEEEe
Confidence 9999999998764322222223333556664
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.9e-07 Score=80.28 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=53.5
Q ss_pred EcCCCcEEEEEEEecCCCCeEEEEecCC-------------------------ceeecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 556 VDRGAGVNLLCDVDGNPAPEITWIHEDS-------------------------DKVVGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 556 v~~G~~~~l~C~~~g~p~p~v~W~k~~~-------------------------~~~~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
+.+|+++.|.|.........+.|+|... +.....+++|+|.+++.+|+|.|+|.+
T Consensus 11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v 90 (107)
T d1l6za1 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM 90 (107)
T ss_dssp CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence 6799999999975444456899998642 222345689999999999999999999
Q ss_pred EecCCCceeeEEEEEE
Q psy17146 611 SVMGFPEVGAEATVYL 626 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V 626 (1011)
.+...+..+..+.|.|
T Consensus 91 ~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 91 TDENYRRTQATVRFHV 106 (107)
T ss_dssp EETTEEECCCCEEECC
T ss_pred EECCCCEEEEEEEEEE
Confidence 9854455555666654
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=1.2e-06 Score=75.07 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=57.9
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.|||....-. ....-...+|+....+ ...+.|+|.+++.
T Consensus 3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~--~~~~~L~I~~~~~ 80 (107)
T d1mexl1 3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGS--GTDFTLTINNVQS 80 (107)
T ss_dssp CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCG
T ss_pred cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCC--CCeeeeeechhhe
Confidence 35667888999999999999998653 34789997532111 1111122357766544 4678999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 81 ~DsA~YyCa~~~ 92 (107)
T d1mexl1 81 EDLAEYFCQQYN 92 (107)
T ss_dssp GGCSEEEEEECS
T ss_pred ecceeEEEeECC
Confidence 999999998754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=7e-07 Score=76.43 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=56.6
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.||+....-.. .......+++.... ....++|+|.+++.
T Consensus 3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~l~~ 80 (108)
T d1jhll_ 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEP 80 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCT
T ss_pred cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC--CCCEEEeEeeeeEe
Confidence 35667899999999999999998764 447999976421110 01111223444433 34678999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|...+
T Consensus 81 ~Dsa~YyCA~~~ 92 (108)
T d1jhll_ 81 EDFAMYICQQHN 92 (108)
T ss_dssp TCCSEEEEEECS
T ss_pred ccceEEEEeeCC
Confidence 999999998654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=1.2e-06 Score=74.80 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=57.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCe--ec------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDF--AL------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~--~l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+... .. .........+|+....+ ...++|+|.+++.+
T Consensus 3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS--GRDYSFSISNLEPE 80 (106)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEECSCCGG
T ss_pred eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC--CCEeeeEehhhccc
Confidence 5667899999999999999998753 34699998531 11 01111122357766544 35689999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 81 DsA~YyCa~~~ 91 (106)
T d1a0ql1 81 DIATYYCLQYY 91 (106)
T ss_dssp GCSEEEEEECS
T ss_pred CCEeEEEEEeC
Confidence 99999998754
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3e-07 Score=80.00 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=52.7
Q ss_pred ceeEEecCcEEEEEEEcCCCC----eeE--EeeCCeecC------Ccc----cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 36 DQTAVVGSRVTLPCRVIDKTG----VLQ--WTKDDFALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~~~----~v~--W~k~~~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.+.+..|++|+|+|.+..+.. .+. |.++..... ... .-....|.... .++++|+|.+++.
T Consensus 3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~----~~~~sL~I~~v~~ 78 (110)
T d1ncna_ 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD----SDSWTLRLHNLQI 78 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE----TTTTEEEECSCCG
T ss_pred EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEecc----CCeEEEEECCCCh
Confidence 467889999999999975321 334 444432210 001 01111333332 3457899999999
Q ss_pred CCCceEEEEEEeCCCC-CcceeeeEEEEEEE
Q psy17146 100 DDDARYQCQVSTGILG-EPAIRSRFATLTVL 129 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~ 129 (1011)
+|+|.|.|.+.....+ ........+.|.|.
T Consensus 79 ~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 79 KDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp GGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred hHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence 9999999999754322 11223445556553
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.33 E-value=1.6e-06 Score=74.95 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=62.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
|..+.+.+|++|+|.|...+. ...+.||+....-. ........+|+....+ ...+.|.|.+++.+|+
T Consensus 7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~Ds 84 (114)
T d2rhea_ 7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKS--GTSASLAISGLESEDE 84 (114)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEE--TTEEEEEESSCCGGGC
T ss_pred CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCC--CCeeeeEecccCcccC
Confidence 347899999999999998763 34789998642211 1111222356666543 4678999999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~ 131 (1011)
|.|.|.+...... ..+.-.-..|+|...
T Consensus 85 A~YyCA~~~~~~~-~~~FG~GT~LtVlg~ 112 (114)
T d2rhea_ 85 ADYYCAAWNDSLD-EPGFGGGTKLTVLGQ 112 (114)
T ss_dssp EEEEEEEEETTTT-EEEECCCEEEEECSC
T ss_pred ceEEEeecCCCCC-CCEECCCeEEEECCC
Confidence 9999998653222 122233456777643
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.33 E-value=1.3e-06 Score=74.72 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=57.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeec--------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL--------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l--------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+....- .........+|+....+ ...+.|+|.+++.+
T Consensus 3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~--~~~~~L~I~~~~~~ 80 (106)
T d1op3k1 3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS--GTEFTLTISGLQFD 80 (106)
T ss_dssp EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEEESCCGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeecc--CCEEEEEEcccccc
Confidence 4567899999999999999998764 3368999864211 01111122357666543 46679999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 81 Dsa~YyCa~~~ 91 (106)
T d1op3k1 81 DFATYHCQHYA 91 (106)
T ss_dssp GCSEEEEEEEC
T ss_pred CCCcEeeeeCC
Confidence 99999998764
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=4.8e-07 Score=77.49 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=57.3
Q ss_pred CceeEEecCcEEEEEEEcC---CCCeeEEeeCC--ee---c-CCc---ccC--CCCcceEEeecCCCceeEEEEeecccC
Q psy17146 35 QDQTAVVGSRVTLPCRVID---KTGVLQWTKDD--FA---L-GPH---RNL--SGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~--~~---l-~~~---~~~--~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+...+.+|++|+|.|...+ ....+.|+|.. .. + ... ... ...+|+.+..+...+.++|+|.+++.+
T Consensus 3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e 82 (110)
T d1u9ka_ 3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT 82 (110)
T ss_dssp EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence 4568899999999999875 34578999853 21 1 000 000 112588888777788899999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.....
T Consensus 83 Dsa~YyCa~~~~ 94 (110)
T d1u9ka_ 83 DSGLYRCVIYHP 94 (110)
T ss_dssp GCEEEEEEEECT
T ss_pred CCEEEEEEEeCC
Confidence 999999998654
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.32 E-value=5.1e-07 Score=77.15 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=56.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
++..|..+.+.+|++|+|.|........+.||+....-. ........+++.... ....++|.|.+++.+|
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~D 80 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMETED 80 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCccc
Confidence 456788999999999999999876666789998642111 001111124444433 3467899999999999
Q ss_pred CceEEEEEEe
Q psy17146 102 DARYQCQVST 111 (1011)
Q Consensus 102 ~G~Y~C~~~~ 111 (1011)
+|.|.|....
T Consensus 81 sa~YyCa~~~ 90 (104)
T d1yqvl1 81 AATYYCQQWG 90 (104)
T ss_dssp CEEEEEEECS
T ss_pred CCeEEEEecC
Confidence 9999998643
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.32 E-value=1.4e-06 Score=75.56 Aligned_cols=98 Identities=23% Similarity=0.228 Sum_probs=63.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------C----cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------P----HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~----~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
++..|..+.+.+|++|+|.|........+.|||.. .... . .......+|+.... .....++|+|.++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~ 80 (112)
T d1kgce1 2 VSQSPRYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQRT 80 (112)
T ss_dssp CEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESSC
T ss_pred eEECCCeEEECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECCC
Confidence 45568889999999999999977666789999853 1110 0 01111224555443 3445679999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+.+|+|.|.|.+...... ..+.-.-..|+|.
T Consensus 81 ~~~Dsa~YyCa~~~~~~~-~~~FG~GT~LtV~ 111 (112)
T d1kgce1 81 QQEDSAVYLCASSLGQAY-EQYFGPGTRLTVT 111 (112)
T ss_dssp CGGGCEEEEEEEESSTTS-CCEECCCEEEEEE
T ss_pred CcCCCEEEEEeeeCCCCC-CcEECcCEEEEEe
Confidence 999999999998643221 1222333556665
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.31 E-value=1e-06 Score=76.26 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=59.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCC---CeeEEeeCCe--ecC------CcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDDF--ALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~~~--~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.|..+++.+|++|+|.|...+.. .-+.|+|... .+. ....-...+|+....+.....+.|+|.+++.+|
T Consensus 6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D 85 (111)
T d1cd0a_ 6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED 85 (111)
T ss_dssp CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence 46789999999999999987643 2589998632 110 111112336787777766778999999999999
Q ss_pred CceEEEEEEeC
Q psy17146 102 DARYQCQVSTG 112 (1011)
Q Consensus 102 ~G~Y~C~~~~~ 112 (1011)
+|.|.|.....
T Consensus 86 sa~YyCA~~~~ 96 (111)
T d1cd0a_ 86 EADYYCQSYDA 96 (111)
T ss_dssp CEEEEEEEEET
T ss_pred CcEEEEeeccC
Confidence 99999987653
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.31 E-value=6.1e-07 Score=78.41 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=56.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--ee---cC----CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FA---LG----PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~---l~----~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
++..|..+.+.+|++|+|.|..... ...+.|||.. .. +. ........++...........++|+|.+++.
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 5667788999999999999998763 4578899742 21 10 0000111234444444455678999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 83 ~Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 83 SDSAVYFCAVSG 94 (115)
T ss_dssp GGCEEEEEEEEE
T ss_pred cccceecccccC
Confidence 999999998764
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.31 E-value=1.7e-06 Score=74.54 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=56.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCe--ec----C--CcccCCCCcceEEeecCCCceeEEEEee
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDF--AL----G--PHRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~--~l----~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++..|..+.+.+|++|+|.|+.... ...+.||+... .. . ........+|+....+ ...+.|+|.+
T Consensus 4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~--~~~~~L~I~~ 81 (111)
T d2gsia1 4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGS--GTDFTLNIHP 81 (111)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESS
T ss_pred eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecC--CCchhccccc
Confidence 5567889999999999999987642 22589998632 11 0 1111122357766543 4578999999
Q ss_pred cccCCCceEEEEEEeC
Q psy17146 97 VMLDDDARYQCQVSTG 112 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~ 112 (1011)
++.+|+|.|.|.+...
T Consensus 82 ~~~~DsA~YyCa~~~~ 97 (111)
T d2gsia1 82 VEEEDAATYYCSHIRE 97 (111)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred ccccCCceEEEEECCC
Confidence 9999999999987543
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.30 E-value=1.3e-06 Score=76.06 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=57.4
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeC--CeecC---------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKD--DFALG---------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~--~~~l~---------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|........+.|||. +.... .........|+.... .....++|+|.+++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~ 80 (113)
T d2ntsp1 2 VTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ-FSNSRSEMNVSTLE 80 (113)
T ss_dssp CEEECSEEEEETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCC
T ss_pred eEeCCCeEEECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeecc-CcCCeeEEEECCCC
Confidence 3556888999999999999998776678999984 32211 000111224444433 33456799999999
Q ss_pred cCCCceEEEEEEeC
Q psy17146 99 LDDDARYQCQVSTG 112 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~ 112 (1011)
.+|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 81 LGDSALYLCASSLA 94 (113)
T ss_dssp GGGCEEEEEEEESS
T ss_pred cccceeeeeeeeCC
Confidence 99999999998753
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.30 E-value=1.7e-06 Score=75.21 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=63.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCe--ecC---------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDF--ALG---------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~--~l~---------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|........+.|||... .+. ........+++.... .....+.|+|.+++
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~ 81 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EKKERFSLILESAS 81 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SSTTBCEEEESSCC
T ss_pred EEccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-ccCcEeeeEeccCc
Confidence 566788999999999999999866666899998531 110 001111123444433 33456789999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+|+|.|.|.+...........-.-..|+|.
T Consensus 82 ~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~ 112 (113)
T d1j8he1 82 TNQTSMYLCASSSTGLPYGYTFGSGTRLTVV 112 (113)
T ss_dssp GGGCEEEEEEEECTTSSSCCEEBCCEEEEEE
T ss_pred cCCcccEEeeEccCCCCCcCEECCCEEEEEe
Confidence 9999999999875322211122233566665
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.30 E-value=9.1e-07 Score=76.14 Aligned_cols=80 Identities=29% Similarity=0.428 Sum_probs=56.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+....-. ........+|+....+ ...+.|+|.+++.
T Consensus 4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~--~~~~~L~I~~~~~ 81 (108)
T d2fx7l1 4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGS--GTDFTLTISRLEP 81 (108)
T ss_dssp EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEESSCCG
T ss_pred EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecC--CCEEEEEehHhee
Confidence 4567889999999999999998653 33688998642111 1111222356665543 3568999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCa~~~ 93 (108)
T d2fx7l1 82 EDFAVYYCQQYG 93 (108)
T ss_dssp GGCSEEEEEECS
T ss_pred cccEEEeeecCC
Confidence 999999998754
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=1.4e-06 Score=74.60 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=54.2
Q ss_pred cCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
.|..+.+.+|++|+|.|.... ....+.|||....-. ........+|+....+ ...+.|+|.+++.+|+|
T Consensus 6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~--~~~~~L~I~~~~~~Dsa 83 (106)
T d1lk3l1 6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS--GTDFTLTIDPVEADDTA 83 (106)
T ss_dssp CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGGGCE
T ss_pred eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecC--CCEEEeEECCcChhhCC
Confidence 355799999999999999986 345799997632111 1111112356666544 35689999999999999
Q ss_pred eEEEEEEe
Q psy17146 104 RYQCQVST 111 (1011)
Q Consensus 104 ~Y~C~~~~ 111 (1011)
.|.|....
T Consensus 84 ~YyCa~~~ 91 (106)
T d1lk3l1 84 IYFCQQSW 91 (106)
T ss_dssp EEEEEECS
T ss_pred Cccccccc
Confidence 99997654
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.29 E-value=1.4e-06 Score=75.46 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=63.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC-------C-c--ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG-------P-H--RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~-------~-~--~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
++..|..+.+.+|++|+|.|........+.|||.. ..+. . . ..-...+|+..... ....++|+|.++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i~~~ 80 (111)
T d2esve1 2 VTQFPSHSVIEKGQTVTLRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT-GGTYSTLKVQPA 80 (111)
T ss_dssp CEEECSEEEEETTCCEEEEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEESSC
T ss_pred cEECCCEEEECCCCCEEEEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC-CCCEEEEEECCc
Confidence 45668899999999999999976666689999763 1110 0 0 01112245554433 345678999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+.+|+|.|.|.+..... ....-.-..|+|.
T Consensus 81 ~~~Dsa~YyCa~~~~~~--~~~FG~GT~LtVl 110 (111)
T d2esve1 81 ELEDSGVYFCASSQDRD--TQYFGPGTRLTVL 110 (111)
T ss_dssp CGGGCEEEEEEEESSSS--SCEECCCEEEEEE
T ss_pred ccCCCceEEEeeeCCCC--ccEECCCeEEEEe
Confidence 99999999998754321 1122233566665
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=9.1e-08 Score=84.42 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A--- 811 (1011)
.|.+|.++++..++.+++.|+| ++.|++.+|++|.|+++.... .|++.|.| |
T Consensus 15 ~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~ 94 (117)
T d1uema_ 15 LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINP 94 (117)
T ss_dssp SCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEEEET
T ss_pred cCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEEEEEEEeC
Confidence 3448999999999999999999 888999999999999876543 89999999 5
Q ss_pred CCCCCCC--ccccccccccccc
Q psy17146 812 GHDSETG--SESVHTRIGVPLA 831 (1011)
Q Consensus 812 ~G~g~~s--s~~~~t~~~~P~~ 831 (1011)
.|.|++| +..++|++.+|.+
T Consensus 95 ~G~s~~S~~s~~v~t~~~~Pss 116 (117)
T d1uema_ 95 QGLSDPSPMSDPVRTQDSGPSS 116 (117)
T ss_dssp TEEEEECCCCCCEECCCSSCCC
T ss_pred CcCCCCcCCCcCEEeCCCCcCC
Confidence 8999988 4567898888864
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=1e-06 Score=75.55 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=57.2
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.||+....-. ....-...+|+....+ ...++|+|.+++.
T Consensus 3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~ 80 (107)
T d1d5il1 3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGS--GQDYSLTISSLEY 80 (107)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCG
T ss_pred CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeeccc--CCEEEccccccCC
Confidence 35667889999999999999998753 44688997632111 0011112256665544 3568999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|....
T Consensus 81 ~Dsa~YyCa~~~ 92 (107)
T d1d5il1 81 EDMGIYYCLQYD 92 (107)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCEEEEeeecc
Confidence 999999998754
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=2e-06 Score=74.80 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=62.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCee--cC------Cc---ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA--LG------PH---RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~--l~------~~---~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
++..|..+.+.+|++|+|.|+.......+.||+.... +. .. ......+++... ......++|+|.+++
T Consensus 2 VtQsP~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~ 80 (114)
T d1ogae1 2 ITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS-REKKESFPLTVTSAQ 80 (114)
T ss_dssp EECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEEC-CSSTTBCCEEECSCC
T ss_pred cEEcCCeEEEcCCCCEEEEEEEecCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEE-cccCCeEEEEECcCC
Confidence 4556888999999999999998766678999976421 10 00 001111233332 223456789999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+|+|.|.|.+....... ...-.-..|+|.
T Consensus 81 ~~DSa~YyCa~~~~~~~~-~~FG~GT~LtV~ 110 (114)
T d1ogae1 81 KNPTAFYLCASSSRSSYE-QYFGPGTRLTVT 110 (114)
T ss_dssp SCCCEEEEEEEESSTTSC-CEECCCEEEEEE
T ss_pred cCCceeEEEeeccCCCCc-cEECCCEEEEEC
Confidence 999999999876533221 222333566665
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.27 E-value=1.9e-06 Score=74.23 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=58.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.||+....-. ........+|+....+ ...+.|+|.+++.
T Consensus 5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~--~~~~~L~I~~l~~ 82 (109)
T d1bwwa_ 5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGS--GTDYTFTISSLQP 82 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCG
T ss_pred eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCC--CCEeEEEEeecee
Confidence 35567889999999999999999864 44688998532111 1112222356665543 3567999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 83 EDIATYYCQQYQ 94 (109)
T ss_dssp GGCEEEEEEECS
T ss_pred CcCceEEEeecC
Confidence 999999998764
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.27 E-value=3.7e-06 Score=73.77 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=59.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc---c--cCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH---R--NLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+...+..+++.+|++|+|.|.+.+. ...+.||+.. ..+. .. . .-...+|+.+..+.....+.|+
T Consensus 4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~ 83 (123)
T d1hxmb1 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (123)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence 4445567889999999999999863 3478999853 1110 00 0 0112358888877667788999
Q ss_pred EeecccCCCceEEEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~ 111 (1011)
|.+++.+|+|.|.|....
T Consensus 84 i~~l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 84 IHNVEKQDIATYYCALWE 101 (123)
T ss_dssp ECSCCGGGCEEEEEEEEE
T ss_pred ccccccccCcEEEEeeeC
Confidence 999999999999998754
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.26 E-value=8.6e-07 Score=76.13 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=57.8
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeec------C--CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL------G--PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l------~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
.++..|..+.+.+|++|+|.|..... ...+.||+....- . ....-...+|+.... ....+.|.|.+++.
T Consensus 3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~ 80 (109)
T d1mqkl_ 3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLP 80 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccc
Confidence 35667899999999999999998753 4469999853211 1 111111235665544 34678999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 81 ~DSa~YyCA~~~ 92 (109)
T d1mqkl_ 81 EDFGSYYCQHHY 92 (109)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCeeEEEeeeC
Confidence 999999998764
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.26 E-value=7.4e-08 Score=80.88 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=55.5
Q ss_pred ceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 36 DQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
.++|.+|++|+|.|........+.|+|.. ..+. ........+|+++..+.....++|+|.+++.+|+|.|.|
T Consensus 2 slsV~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 81 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 81 (96)
T ss_dssp CCCCSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred CceECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence 46788999999999987766689999843 2211 111122235666655555566789999999999999999
Q ss_pred EEEeC
Q psy17146 108 QVSTG 112 (1011)
Q Consensus 108 ~~~~~ 112 (1011)
.+...
T Consensus 82 A~~~~ 86 (96)
T d1ymmd1 82 ATDTT 86 (96)
T ss_dssp EEEET
T ss_pred eEecC
Confidence 98764
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.26 E-value=9.8e-07 Score=76.28 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=58.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCe--ec---C------CcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDF--AL---G------PHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~--~l---~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.++..|..+.+.+|++|+|.|........+.|||... .. . ........+++..... ....+.|+|.++
T Consensus 3 ~V~Q~P~~~~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~ 81 (110)
T d2aq2a1 3 AVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRP-SQEQFSLILESA 81 (110)
T ss_dssp SEEEECSEEEECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEE-ETTEEEEEESSC
T ss_pred CEEEeCCeEEEcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEec-cCCEEEEEECCC
Confidence 3666789999999999999999887667899998532 11 0 0001111234444433 234689999999
Q ss_pred ccCCCceEEEEEEeC
Q psy17146 98 MLDDDARYQCQVSTG 112 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~ 112 (1011)
+.+|+|.|.|.+...
T Consensus 82 ~~~Dsa~YyCa~~~~ 96 (110)
T d2aq2a1 82 TPSQTSVYFCASGGG 96 (110)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CHhhCEEEEEeeCCC
Confidence 999999999998753
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.24 E-value=3.3e-06 Score=72.87 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=54.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
|..+.+.+|++|+|.|..... ...+.||+.... + .........+|+....+ ...++|+|.+++.+|+
T Consensus 7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~~~~~Ds 84 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKS--GTSATLGITGLQTGDE 84 (111)
T ss_dssp CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE--TTEEEEEESSCCGGGC
T ss_pred CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCC--CCEeeeEEeeeccccC
Confidence 557999999999999998753 346999975311 1 11111222356666554 3568999999999999
Q ss_pred ceEEEEEEeC
Q psy17146 103 ARYQCQVSTG 112 (1011)
Q Consensus 103 G~Y~C~~~~~ 112 (1011)
|.|.|.+...
T Consensus 85 a~YyCA~~~~ 94 (111)
T d1rzfl1 85 ADYYCGTWDS 94 (111)
T ss_dssp SEEEEEEEET
T ss_pred cceEEeecCC
Confidence 9999988654
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.24 E-value=9.7e-07 Score=76.27 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=55.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEee
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+.. ..+. .........|+.... ....+.|.|.+
T Consensus 4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~--~~~~~~L~I~~ 81 (111)
T d1j05a_ 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDP 81 (111)
T ss_dssp EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSEEEEEESS
T ss_pred EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec--CCCEEEEEEcc
Confidence 4566889999999999999987532 2259999853 2110 111111224555443 45678999999
Q ss_pred cccCCCceEEEEEEeC
Q psy17146 97 VMLDDDARYQCQVSTG 112 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~ 112 (1011)
++.+|+|.|.|.+.+.
T Consensus 82 ~~~~Dsa~YyCa~~~~ 97 (111)
T d1j05a_ 82 VEADDVATYYCQQTNE 97 (111)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred cccccCccEEEeecCC
Confidence 9999999999987643
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=2.1e-07 Score=80.54 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCC-CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c
Q psy17146 760 KKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A 811 (1011)
Q Consensus 760 ~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A 811 (1011)
.+| +|.++.+..++.+++.|+| |+.|++++|++|+|+++.... .|+++|.| |
T Consensus 9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A 88 (108)
T d1x4za1 9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRA 88 (108)
T ss_dssp CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEEE
Confidence 345 8899999999999999999 888999999999999986432 88999999 5
Q ss_pred ---CCCCCCC
Q psy17146 812 ---GHDSETG 818 (1011)
Q Consensus 812 ---~G~g~~s 818 (1011)
.|.|++|
T Consensus 89 ~N~~G~s~~S 98 (108)
T d1x4za1 89 LNMLGESEPS 98 (108)
T ss_dssp EETTEECCCC
T ss_pred ECCCcCCCCC
Confidence 8999888
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.23 E-value=1.7e-06 Score=72.22 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=50.8
Q ss_pred cCcEEEEEEEcC-CCCeeEEeeCCeecC-------CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 42 GSRVTLPCRVID-KTGVLQWTKDDFALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 42 G~~v~L~C~v~~-~~~~v~W~k~~~~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
|++|+|.|.... ....+.|||....-. ........+|+....+.....++|+|.+++.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 899999999876 445799998542211 01111223577776666667789999999999999999998653
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.5e-07 Score=83.04 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc----------------------cccccccc---c--
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------------~p~~~Y~f---A-- 811 (1011)
.+.+|.++++..++.+++.|+| ++.+++.+|..|.++++.... .|+++|+| |
T Consensus 16 ~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n 95 (127)
T d1ueya_ 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVN 95 (127)
T ss_dssp SCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEEEEE
T ss_pred cCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEEEEEEc
Confidence 4448899999999999999999 888899999999999987643 78999999 5
Q ss_pred -CCCCCCC--cccccccccccccccccCCcc
Q psy17146 812 -GHDSETG--SESVHTRIGVPLAGPVPMDQR 839 (1011)
Q Consensus 812 -~G~g~~s--s~~~~t~~~~P~~~P~~~~~~ 839 (1011)
.|.|++| +..++|.+++|..+|.++.+.
T Consensus 96 ~~G~s~~S~~s~~~~t~~~~P~~~P~~~p~~ 126 (127)
T d1ueya_ 96 SIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126 (127)
T ss_dssp SSCBCCCCSCCCCEECCCSSCSSCSSCCCCC
T ss_pred CCcCcCCcCCcccEEcCCCCCCCCCCCCCCC
Confidence 8999988 556889999999999887654
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.22 E-value=1.6e-06 Score=73.90 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
|..+++.+|++|+|.|..... ...+.|||....-. .........|+....+ ...+.|+|.+++.+|+|.
T Consensus 5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~l~~~Dsa~ 82 (103)
T d8faba1 5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTS--GTTVTLTISGVQAEDEAD 82 (103)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEETTCCGGGCEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCC--CCccCceEcCcchhHCce
Confidence 457899999999999998763 34789997642111 1111112245554433 456899999999999999
Q ss_pred EEEEEEeC
Q psy17146 105 YQCQVSTG 112 (1011)
Q Consensus 105 Y~C~~~~~ 112 (1011)
|.|.+...
T Consensus 83 YyCA~~~~ 90 (103)
T d8faba1 83 YYCQAWDN 90 (103)
T ss_dssp EEEEEEET
T ss_pred EEeeecCC
Confidence 99987653
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.22 E-value=1.8e-06 Score=74.46 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=59.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCee--cC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFA--LG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~--l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.|||.... +. ........+|+....+.....+.|+|.+++.+
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 5667889999999999999998763 346999985421 10 00111122466666555566789999999999
Q ss_pred CCceEEEEEEeC
Q psy17146 101 DDARYQCQVSTG 112 (1011)
Q Consensus 101 D~G~Y~C~~~~~ 112 (1011)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 83 DSAVYYCALSGG 94 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred CCcccceeecCC
Confidence 999999988653
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.20 E-value=1.4e-06 Score=75.22 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=54.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
++..|..+.+.+|++|+|.|+..+. ...+.|++....-... .......|+.... ....+.|+|.
T Consensus 4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~--s~~~~~L~Is 81 (112)
T d1mjul1 4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG--SGTAFTLRIS 81 (112)
T ss_dssp EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--CSSEEEEEES
T ss_pred eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec--CCCEEEEEEC
Confidence 4556888999999999999997652 3468999764221111 1111224555443 4567899999
Q ss_pred ecccCCCceEEEEEE
Q psy17146 96 PVMLDDDARYQCQVS 110 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~ 110 (1011)
+++.+|+|.|.|...
T Consensus 82 ~~~~~DsAvYyCa~~ 96 (112)
T d1mjul1 82 RVEAEDVGVYYCLQH 96 (112)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred CccccCCceEEEEeC
Confidence 999999999999654
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.20 E-value=3.7e-06 Score=73.50 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=59.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC---CeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+..++..+.+.+|++|+|.|.+.+.. ..+.|+|.. ..+. ....-...+|+....+.....+.|+|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 55677889999999999999998643 368999742 2111 111122236777776655567899999999
Q ss_pred cCCCceEEEEEEe
Q psy17146 99 LDDDARYQCQVST 111 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~ 111 (1011)
.+|+|.|.|....
T Consensus 84 ~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 84 ERDEGSYYCACDT 96 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCCceeecCccc
Confidence 9999999998765
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.19 E-value=4.2e-06 Score=72.35 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=56.4
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-------CCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-------TGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-------~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
++..|..+.+.+|++|+|.|..... ...+.|||.... + .........+|+....+ ...++|+|
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s--~~~~~L~I 81 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS--GTDFTLTI 81 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEE
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCC--CCeEeEEe
Confidence 5567899999999999999987642 125899985321 1 11112223356665443 46779999
Q ss_pred eecccCCCceEEEEEEe
Q psy17146 95 YPVMLDDDARYQCQVST 111 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~ 111 (1011)
.+++.+|+|.|.|.+..
T Consensus 82 ~~l~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 82 TSVQAEDLAVYYCKQSY 98 (113)
T ss_dssp SSCCGGGCEEEEEEECS
T ss_pred cccccCCCeEEEecccC
Confidence 99999999999998754
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.19 E-value=1.7e-06 Score=74.78 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=56.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+....-.. .......+|+.... ....++|+|.
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~ 82 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKIS 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEES
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCccC
Confidence 5567889999999999999998642 236899976422111 11122235665544 3467899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|+|.|.|...+
T Consensus 83 ~~~~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 83 RVEAEDLGIYYCFQGS 98 (113)
T ss_dssp SCCGGGCEEEEEEECS
T ss_pred CCCcccCEEEEEEECC
Confidence 9999999999997654
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=2e-07 Score=79.07 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CC
Q psy17146 763 PPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G 813 (1011)
+|.++.+..++.+++.|+| |..+++++|++|.|+++...+ .|+++|.| | .|
T Consensus 4 ~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n~~G 83 (98)
T d1x5ya1 4 APQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAG 83 (98)
T ss_dssp CCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEETTE
T ss_pred CCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEECCCc
Confidence 8889999999999999999 556678899999999987654 88889999 5 89
Q ss_pred CCCCC
Q psy17146 814 DSETG 818 (1011)
Q Consensus 814 ~g~~s 818 (1011)
.|++|
T Consensus 84 ~s~~s 88 (98)
T d1x5ya1 84 RSEPA 88 (98)
T ss_dssp ECCCC
T ss_pred CCCCc
Confidence 99887
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3e-06 Score=69.96 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=61.9
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+...|.. .|..|++|+|.|........+.|+|+|.... .... . ....+.+.|.+|+.+|+|.|+
T Consensus 4 kPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~----------~~~~-~-~~~~a~F~i~~v~~~~~G~Y~ 70 (93)
T d1olla2 4 TPTLSVHPGP-EVISGEKVTFYCRLDTATSMFLLLKEGRSSH----------VQRG-Y-GKVQAEFPLGPVTTAHRGTYR 70 (93)
T ss_dssp CCEEEEESCS-EEETTCEEEEEEECSSSCSEEEEEEESSSCE----------EEEE-E-CSSEEEEEEEECCGGGCEEEE
T ss_pred CCEEEEeCCC-cccCCCcEEEEECCCCCCCEEEEEECCCccc----------eeec-C-CCceeEEEecccChhcCceEE
Confidence 4677788865 6889999999999877777999999884321 1111 1 234568999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|...... ......|..+.|.|.
T Consensus 71 C~~~~~~-~~wS~~SdpLeL~Vt 92 (93)
T d1olla2 71 CFGSYNN-HAWSFPSEPVKLLVT 92 (93)
T ss_dssp EECEEET-TEECCCCCCEEEEEE
T ss_pred EEeECCC-CCcCCCCCCEEEEee
Confidence 9754321 112334566666664
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3e-06 Score=70.62 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...+..|++|+|.|... .....+.|+|+|......... ....+..+.+.|.+++..|+|.|+|
T Consensus 4 KPsLsa~P~~~V~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~-------~~~~~~~a~F~i~~v~~~~~G~Y~C 74 (95)
T d1olla1 4 KPFIWAEPHFMVPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPK-------PPERINKVKFYIPDMNSRMAGQYSC 74 (95)
T ss_dssp CCEEEEESCSEEETTCCEEEEEECC--TTCCEEEEEETTEEEEEECCS-------SCTTCCEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeeCCCcccCCCcEEEEEecC--CCccEEEEEECCCCcceeEEc-------cCCCccEEEEEEeeeecCCCceEEE
Confidence 5777766666788999999999753 333379999998754321110 0012345789999999999999999
Q ss_pred EEEcCCCC--eEEEEEEEe
Q psy17146 709 SVSNPYGS--DSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~--~~~~~~l~V 725 (1011)
...+..+. .+..+.|.|
T Consensus 75 ~y~~~~~~S~~Sd~leL~V 93 (95)
T d1olla1 75 IYRVGELWSEPSNLLDLVV 93 (95)
T ss_dssp EEEETTEECCCCCCEEEEE
T ss_pred EeCCCCCccCCCCCEEEEE
Confidence 99887662 244555555
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.16 E-value=5.8e-06 Score=71.10 Aligned_cols=80 Identities=20% Similarity=0.386 Sum_probs=54.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
++..|..+.+.+|++|+|.|+.... ..-+.|++....-. ........+|+.... ...++.|+|.
T Consensus 4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~--~~~~~~L~I~ 81 (112)
T d1ncwl1 4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG--SGTDFTLKIS 81 (112)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC--CCCEEEEEEC
Confidence 4566889999999999999987532 23589997632111 111111225655443 3466899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|+|.|.|...+
T Consensus 82 ~~~~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 82 RVEAEDLGVYYCWQGT 97 (112)
T ss_dssp SCCGGGCEEEEEEECS
T ss_pred ccccCcCEeEEEEcCC
Confidence 9999999999996543
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.15 E-value=1.8e-06 Score=74.94 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=64.5
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCc-----------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH-----------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~-----------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.++..|..+.+.+|++|+|.|........+.|||....-... ..-...+|+..... ....++|+|.++
T Consensus 3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~ 81 (113)
T d1nfdb1 3 GVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSAL 81 (113)
T ss_dssp SCEEECSEEEEETTCCCEEEEECCTTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEEC-TTSCEEEECCSC
T ss_pred CEEEcCCEEEEeCCCCEEEEEEeCCCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcC-CCCeEEEEeccc
Confidence 466778999999999999999976666689999875221100 00111245555433 344578999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+.+|+|.|.|.+...... ....-.-..|+|.
T Consensus 82 ~~~Dsa~YyCa~~~~~~~-~~~FG~GT~LtV~ 112 (113)
T d1nfdb1 82 ELEDSAMYFCASSLRWGD-EQYFGPGTRLTVL 112 (113)
T ss_dssp CGGGCEEECEEEESSSCS-CCEECCCEEEEEE
T ss_pred CcCCceeEEEEeecCCCC-ccEECCCeEEEEE
Confidence 999999999987643221 1222233556664
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.15 E-value=1.9e-06 Score=73.74 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=54.0
Q ss_pred cCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
.|..+.+.+|++|+|.|.... ....+.|++....-. ........+|+....+ ...++|.|.+++.+|+|
T Consensus 6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~l~~~Dsa 83 (109)
T d1w72l1 6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNS--GNMATLTISRVEAGDEA 83 (109)
T ss_dssp CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEESSCCGGGCE
T ss_pred eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecC--CCccceEEeeeccCCCE
Confidence 345789999999999999765 334799997642111 1111112345554433 46789999999999999
Q ss_pred eEEEEEEeC
Q psy17146 104 RYQCQVSTG 112 (1011)
Q Consensus 104 ~Y~C~~~~~ 112 (1011)
.|.|.+...
T Consensus 84 vYyCA~~~~ 92 (109)
T d1w72l1 84 DYYCQVWDS 92 (109)
T ss_dssp EEEEEEEET
T ss_pred EEEEEecCC
Confidence 999998654
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.15 E-value=3.2e-06 Score=73.20 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred eecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCC-----------cccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP-----------HRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~-----------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
...|..+.+.+|++|+|.|........+.||+....-.. ...-....+..... .....++|+|.+++.
T Consensus 2 ~QsP~~~~~~~G~svtL~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~ 80 (112)
T d2cdeb1 2 YQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR-IRTEHFPLTLESARP 80 (112)
T ss_dssp EEECSEEEEETTCCBCCEEEETTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC-SSSSBCCEEBSSCCT
T ss_pred EECCCEEEECCCCCEEEEEEEeCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec-CCCCceEeeeccccc
Confidence 456788999999999999998766678999986421110 00011112333322 234567899999999
Q ss_pred CCCceEEEEEEeC
Q psy17146 100 DDDARYQCQVSTG 112 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~ 112 (1011)
+|+|.|.|.+...
T Consensus 81 ~Dsa~YyCA~~~~ 93 (112)
T d2cdeb1 81 SHTSQYLCASSEN 93 (112)
T ss_dssp TTCSEEEEEEECS
T ss_pred cccccEEEEEecC
Confidence 9999999988654
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.13 E-value=1.7e-06 Score=74.00 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=56.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+.... + .........+|+....+ ...++|+|.+++.+
T Consensus 4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~--~~~~~L~I~~~~~~ 81 (107)
T d3cx5k1 4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGS--GTDYSLTISNLEPE 81 (107)
T ss_dssp EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEE--TTEEEEECSCCCSC
T ss_pred EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEcc--CCEEEEEEeEeeec
Confidence 5667889999999999999998764 346999976421 1 01112222345554433 35789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|....
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d3cx5k1 82 DIATYFCQHHI 92 (107)
T ss_dssp CCSEEEEEECS
T ss_pred CCCcEEeeeCC
Confidence 99999998653
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.13 E-value=3.1e-06 Score=73.24 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=54.3
Q ss_pred CCceeEEecCcEEEEEEEcCC----CCeeEEeeCCee--c------CCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK----TGVLQWTKDDFA--L------GPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~----~~~v~W~k~~~~--l------~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
|..+.+.+|++|+|.|..... ...+.|||.... + .........+++....+ ...+.|.|.+++.+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~l~~~D 84 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKS--GNSASLTISGLQAED 84 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEECSCCGGG
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECC--CCEeeEEeCcCcccc
Confidence 778999999999999998753 235899985421 1 11111222345555443 357899999999999
Q ss_pred CceEEEEEEeC
Q psy17146 102 DARYQCQVSTG 112 (1011)
Q Consensus 102 ~G~Y~C~~~~~ 112 (1011)
+|.|.|.+...
T Consensus 85 sa~YyCa~~~~ 95 (112)
T d1lgva1 85 EADYYCSSYDG 95 (112)
T ss_dssp CEEEEEEEECS
T ss_pred CEEEEEeeecC
Confidence 99999988654
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=1.7e-06 Score=75.70 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCceeEEecCcEEEEEEEcCCCC----eeEEeeCCe--ec------C-CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDF--AL------G-PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~~----~v~W~k~~~--~l------~-~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
|..+.+.+|++|+|.|....... .+.|+|... .. . ........+++....+.....++|+|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 67789999999999999875322 478998532 11 0 00111112333333333456789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999999864
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.3e-07 Score=77.84 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=55.1
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~ 814 (1011)
.||..+.+...+.+++.|+| ++.|++++|++|.|+++.... .|++.|+| | .|.
T Consensus 2 ~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~ 81 (93)
T d2vkwa2 2 SAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK 81 (93)
T ss_dssp CCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred CCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCCCC
Confidence 37888888999999999999 888999999999999987654 88999999 5 999
Q ss_pred CCCCccccccc
Q psy17146 815 SETGSESVHTR 825 (1011)
Q Consensus 815 g~~ss~~~~t~ 825 (1011)
|+|+...++|.
T Consensus 82 s~ps~~~~~T~ 92 (93)
T d2vkwa2 82 SKAAHFVFRTA 92 (93)
T ss_dssp CCCEEEEEECC
T ss_pred cCCEeEEEEec
Confidence 99996666663
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.6e-06 Score=75.64 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=57.6
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCC----eEEEEecCCce---------------------------ee------cCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDK---------------------------VV------GNS 590 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p----~v~W~k~~~~~---------------------------~~------~~~ 590 (1011)
..+...+.+.+|++++|.|.+...+.. .+.|++..... .. ...
T Consensus 8 t~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 87 (124)
T d1eaja_ 8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGD 87 (124)
T ss_dssp SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTB
T ss_pred EccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCE
Confidence 333445788999999999998765433 68999743110 00 112
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
.+|+|.+++.+|+|.|.|.+.+ ..+..+..+.|.|.
T Consensus 88 ~sL~I~~v~~~D~G~Y~C~v~~-~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 88 ASINVTNLQLSDIGTYQCKVKK-APGVANKKIHLVVL 123 (124)
T ss_dssp CCEEECSCCGGGCEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred EEEEEcccEEccCEEEEEEEEE-CCCeEEeEEEEEEE
Confidence 5799999999999999999998 56667777777774
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.11 E-value=6.3e-06 Score=70.42 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=55.2
Q ss_pred cCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eec----C--CcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FAL----G--PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l----~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
.|..+.+.+|++|+|.|+... ....+.||+.. ..+ . ....-...+|+....+ ...+.|.|.+++.+|+|
T Consensus 5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~--~~~~~L~I~~l~~~Dsa 82 (108)
T d1nfde1 5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS--GTTATLTISGAQPEDEA 82 (108)
T ss_dssp CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEETTCCGGGCS
T ss_pred CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCC--CCEeeeeEcCccccCCc
Confidence 367899999999999999865 33468999753 211 0 1111122357776544 35679999999999999
Q ss_pred eEEEEEEeC
Q psy17146 104 RYQCQVSTG 112 (1011)
Q Consensus 104 ~Y~C~~~~~ 112 (1011)
.|.|.+...
T Consensus 83 ~YyCA~~~~ 91 (108)
T d1nfde1 83 AYYCLSSYG 91 (108)
T ss_dssp EEEEEEEET
T ss_pred eEEEEeecC
Confidence 999998654
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.11 E-value=7.8e-06 Score=71.36 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=57.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCC--eecC---------C--cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDD--FALG---------P--HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~--~~l~---------~--~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+...|..+.+.+|++|+|.|...+. ...+.|||.. ..+. . ...-....|+.+.. .....+.|+|.
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~ 82 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH-ASPTLSTLTVT 82 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE-CSSSEEEEEEC
T ss_pred EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec-ccccccccccc
Confidence 5667888999999999999998763 4579999853 2210 0 01111235666553 34566789999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsa~YyCa~~~ 98 (118)
T d2ij0c1 83 SAHPEDSGFYVCSALA 98 (118)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccccccCceEEEEEec
Confidence 9999999999999865
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.10 E-value=2.5e-06 Score=73.03 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=55.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC----CeeEEeeCC--eec----C--CcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT----GVLQWTKDD--FAL----G--PHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~----~~v~W~k~~--~~l----~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
++. |..+.+.+|++|+|+|+..... ..+.||+.. ..+ . ....-...+|+....+. ..+.|.|.++
T Consensus 4 ~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~--~~~~L~I~~~ 80 (110)
T d1oaql_ 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG--NKAALTITGA 80 (110)
T ss_dssp EEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET--TEEEEEEESC
T ss_pred Eee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc--cceeeecCCC
Confidence 444 4478999999999999997532 248999742 221 1 11111223677766543 5689999999
Q ss_pred ccCCCceEEEEEEeC
Q psy17146 98 MLDDDARYQCQVSTG 112 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~ 112 (1011)
+.+|+|.|.|.....
T Consensus 81 ~~~Dsa~YyCa~~~~ 95 (110)
T d1oaql_ 81 QTEDEAIYFCALWYS 95 (110)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CccccEeEEEEcccC
Confidence 999999999997653
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.09 E-value=2.8e-07 Score=79.69 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------------------cccccc
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------------------VSNVHL 808 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------------------~p~~~Y 808 (1011)
||..+.+.+++.+++.|+| ++.|+|++|++|.||+|.... .|++.|
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 81 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTY 81 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEE
T ss_pred cCcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEE
Confidence 6778889999999999999 778999999999999975321 888999
Q ss_pred cc---c---CCCCCCC
Q psy17146 809 DY---A---GHDSETG 818 (1011)
Q Consensus 809 ~f---A---~G~g~~s 818 (1011)
+| | +|.|.+|
T Consensus 82 ~frV~A~N~~G~s~~S 97 (107)
T d2ic2a1 82 RFRILAVYSNNDNKES 97 (107)
T ss_dssp EEEEEEEETTSCEEEC
T ss_pred EEEEEEEcCCCCCCCC
Confidence 99 5 8999888
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=3.8e-06 Score=73.55 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCceeEEecCcEEEEEEEcCCCC----eeEEeeCCeecC---------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKTG----VLQWTKDDFALG---------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~~----~v~W~k~~~~l~---------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
|..+.+.+|++|+|.|.+..... .+.|+|....-. .........+.....+.....++|+|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 67788999999999999875322 488998753211 00111112233333344566789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998865
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.09 E-value=7.1e-06 Score=68.91 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=58.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc----ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH----RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~----~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.....+.+|++++|.|.+.+. ...+.|+|. |+.+. .. ..-...+|+.+..+.....+.|.|.++
T Consensus 6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL 85 (117)
T d1c5db1 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (117)
T ss_dssp EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence 3445678999999999999973 336889875 33321 00 011234699999988888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 86 ~~eDtAvYYCAr~~ 99 (117)
T d1c5db1 86 QTEDTAIYFCTRED 99 (117)
T ss_dssp CGGGCEEEEEEECC
T ss_pred ccCcceEEEEeccC
Confidence 99999999997543
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.3e-06 Score=70.56 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=59.1
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEE
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 213 (1011)
+|.+...+...|..|++|+|.|.. ..+...+.|+|++.......... ..........+.|.+++.+|+|.|+|
T Consensus 7 kPsLsa~P~~~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~-----~~~~~~~~a~F~l~~vt~~~~G~Y~C 79 (99)
T d1ucta1 7 MPFISAKSSPVIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRR-----LKFWNETDPEFVIDHMDANKAGRYQC 79 (99)
T ss_dssp CCCEEESSCSEEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEE-----CC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCEEEecCCCceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceecccc-----ccCCCCceEEEEecCCCHHHCceEEE
Confidence 345554444567889999999983 35667899999765432211110 00001112478999999999999999
Q ss_pred EEEeCCCCceeEEEEEEEE
Q psy17146 214 QAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 214 ~a~n~~g~~~~s~~v~v~v 232 (1011)
...+.......+..+.|.|
T Consensus 80 ~y~~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 80 QYRIGHYRFRYSDTLELVV 98 (99)
T ss_dssp EEEETTTEEEECCCEEEEE
T ss_pred EEECCCcccCCCCCEEEEe
Confidence 9988765444555566654
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.06 E-value=4.8e-06 Score=72.05 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=53.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC--CCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
.|..+.+.+|++|+|.|...+. ...+.|||.. ..+. ....-....|+.+ ..+.....|+|.+++.+|+
T Consensus 4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~Ds 81 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAI--AEDRKSSTLILHRATLRDA 81 (112)
T ss_dssp CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEE--CTTSSEEEEEESSCCGGGC
T ss_pred CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceee--cccCCeeEEEEeecccccc
Confidence 5778999999999999998753 3358999853 2211 0001111134443 3445678999999999999
Q ss_pred ceEEEEEEe
Q psy17146 103 ARYQCQVST 111 (1011)
Q Consensus 103 G~Y~C~~~~ 111 (1011)
|.|.|.+..
T Consensus 82 a~YyCa~~~ 90 (112)
T d1kgcd1 82 AVYYCILPL 90 (112)
T ss_dssp EEEEEECCC
T ss_pred eeEeeeEec
Confidence 999998754
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.5e-06 Score=70.03 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=53.4
Q ss_pred EcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
|+.+|.+.......+..|+.++|.|.+.|+ |..+.|+|++||+++........... .++.........+..++.+
T Consensus 2 v~~~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~----~dgty~~~s~l~v~~~~~~ 77 (100)
T d1k5nb_ 2 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS----KDWSFYLLYYTEFTPTEKD 77 (100)
T ss_dssp CCBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEEC----TTSCEEEEEEEEECCCSSC
T ss_pred ccCCCeeEEEcCCcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecC----CCCcEEEEEEeEECCCCCC
Confidence 456676653222234678999999999998 66779999999999864222222211 1332223333333455667
Q ss_pred EEEEEEEcCCC
Q psy17146 705 VYNCSVSNPYG 715 (1011)
Q Consensus 705 ~Y~C~a~N~~G 715 (1011)
.|+|.+....-
T Consensus 78 ~ytC~V~H~sl 88 (100)
T d1k5nb_ 78 EYACRVNHVTL 88 (100)
T ss_dssp CEEEEEECTTC
T ss_pred EEEEEEEeCCC
Confidence 89999987643
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.04 E-value=6e-06 Score=69.22 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=55.7
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+...|.. .|..|++|+|.|........+.|+|+|...... ........+.+.+.|..++..|+|.|+
T Consensus 6 kPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~---------~~~~~~~~~~~~f~~~~~~~~~~G~Y~ 75 (99)
T d1nkra2 6 KPSLSAQPGP-TVLAGENVTLSCSSRSSYDMYHLSREGEAHERR---------LPAGPKVNGTFQADFPLGPATHGGTYR 75 (99)
T ss_dssp CCEEEEESCS-EECTTCEEEEEEEESSCCSEEEEEETTCSSCEE---------EECEEEETTEEEEEEEEEECCSCEEEE
T ss_pred CCEEEEeCCC-cccCCCeEEEEECCCCCccEEEEEECCCccccE---------EEccccCCccEEEEEeccccccCEEEE
Confidence 5778888865 778999999999988888899999998543111 111111234556788999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.....
T Consensus 76 C~y~~~ 81 (99)
T d1nkra2 76 CFGSFH 81 (99)
T ss_dssp EEEEET
T ss_pred EEeecC
Confidence 986543
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.04 E-value=6.9e-06 Score=70.08 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=57.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+.+|++|+|.|.+.+. ...+.|+|. |+.+. .. . .-...+|+.+..+.......|+|.+
T Consensus 6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~ 85 (119)
T d1qnzh_ 6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR 85 (119)
T ss_dssp EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence 3445578899999999999873 336899875 33221 10 0 1122369999888877888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDsAvYYCA~~~ 100 (119)
T d1qnzh_ 86 LTSDDSAVYYCAIHY 100 (119)
T ss_dssp ECGGGCEEEEEEECS
T ss_pred cCccceeEEEEEEec
Confidence 999999999997644
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=8.7e-07 Score=77.11 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=55.1
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------------cccccccc---c
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------------VSNVHLDY---A 811 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------------~p~~~Y~f---A 811 (1011)
.+|.++++..++.+++.|+| ++.|++++|++|.|+++.... .|++.|.| |
T Consensus 12 ~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A 91 (111)
T d1wisa1 12 GPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ 91 (111)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEE
T ss_pred cCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEEEEE
Confidence 37889999999999999999 888999999999999886433 88999999 5
Q ss_pred ---CCCCCCC--cccccccc
Q psy17146 812 ---GHDSETG--SESVHTRI 826 (1011)
Q Consensus 812 ---~G~g~~s--s~~~~t~~ 826 (1011)
.|.|++| +..++|++
T Consensus 92 ~N~~G~s~~S~~s~~~~Tlq 111 (111)
T d1wisa1 92 VNIVGTSPPSQPSRKIQTLQ 111 (111)
T ss_dssp ECSSCBCCCCCCCCCEECCC
T ss_pred EcCCcCCCCcCCCCCEEccC
Confidence 8999998 55677753
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.4e-06 Score=74.44 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=56.2
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc------------------cccccccc---c---CCCC
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS------------------VSNVHLDY---A---GHDS 815 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~------------------~p~~~Y~f---A---~G~g 815 (1011)
|.+|.++.+..++.+++.++| ++.+++++|.+|.|+++.... .|++.|.| | .|.|
T Consensus 11 P~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 90 (103)
T d1x5ga1 11 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPG 90 (103)
T ss_dssp CCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCCEEECSSEEEECSCCTTCEEEEEEEEECSSCCC
T ss_pred cccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCceeEEEeccccEEecCCCCCCCEEEEEEEEEcCCcCc
Confidence 348889999999999999999 777778899999999987654 89999999 4 8888
Q ss_pred CCC-ccccccccc
Q psy17146 816 ETG-SESVHTRIG 827 (1011)
Q Consensus 816 ~~s-s~~~~t~~~ 827 (1011)
.+| ...++|+++
T Consensus 91 ~~S~~v~v~T~eD 103 (103)
T d1x5ga1 91 VSTPDVAVRTLSD 103 (103)
T ss_dssp CBCCCCCEECCCS
T ss_pred CCCCCEEEEcCCC
Confidence 888 556777653
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=4.7e-06 Score=70.12 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=52.1
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEe--ccc----------CCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI--GVG----------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l--~~~----------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
....+|++|+|.|........ .+.|++..... ... ..+++....+.. .....+|+|.+++.+|+|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~sL~I~~l~~~DsG~ 81 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW-DQGNFPLIIKNLKIEDSDT 81 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGG-GGTBCCEEECSCCGGGCEE
T ss_pred EEEEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccC-CCCEEEEEECCCChHHCEE
Confidence 346789999999988765555 79999853321 110 111222221111 1224579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.|.+.|. +..+.|.|
T Consensus 82 Y~C~v~~~----~~~v~L~V 97 (97)
T d2nxyb1 82 YICEVEDQ----KEEVQLLV 97 (97)
T ss_dssp EEEEETTE----EEEEEEEE
T ss_pred EEEEEecC----CeEEEEEC
Confidence 99999653 45555543
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=5.6e-06 Score=68.86 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=60.6
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.|.+...|.. .|..|++|+|.|+... ....+.|+|+|...... ... ......+.|.+++.+|+|.|
T Consensus 5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~---------~~~---~~~~a~F~l~~v~~~~~G~Y 71 (96)
T d1ucta2 5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---------HQS---GEHPANFSLGPVDLNVSGIY 71 (96)
T ss_dssp CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---------EEE---CSSSEEEECCSCCGGGCEEE
T ss_pred CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE---------EcC---CCcccEEEEeccccccCcEE
Confidence 4778888865 7999999999998643 44579999998532211 111 12335799999999999999
Q ss_pred EEEEEeCCCC-CcceeeeEEEEEE
Q psy17146 106 QCQVSTGILG-EPAIRSRFATLTV 128 (1011)
Q Consensus 106 ~C~~~~~~~~-~~~~~s~~~~l~V 128 (1011)
+|........ .....|..+.|.|
T Consensus 72 ~C~y~~~~~p~~~S~~Sd~leL~V 95 (96)
T d1ucta2 72 RCYGWYNRSPYLWSFPSNALELVV 95 (96)
T ss_dssp EEEEECTTSTTEECCCCCCEEEEE
T ss_pred EEEEEcCCCCCCccCCCCCEEEEE
Confidence 9988654321 1223456666655
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.98 E-value=7.8e-07 Score=75.71 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=52.3
Q ss_pred cCCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc----------------------cccccccc---c-
Q psy17146 759 VKKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------------VSNVHLDY---A- 811 (1011)
Q Consensus 759 ~~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------------~p~~~Y~f---A- 811 (1011)
..|.+|.++.+. ...+++.|+| ++.|++++|++|.|+++.... .|++.|.| |
T Consensus 4 dvP~~P~~~~v~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~ 82 (100)
T d1cfba1 4 DVPNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAF 82 (100)
T ss_dssp CCCCCCEEEEEE-ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEEE
T ss_pred cCCCcCcCcEEE-EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEEE
Confidence 355589888876 4567899999 888999999999999987544 88999999 5
Q ss_pred --CCCCCCC--cccccc
Q psy17146 812 --GHDSETG--SESVHT 824 (1011)
Q Consensus 812 --~G~g~~s--s~~~~t 824 (1011)
.|.|++| +..++|
T Consensus 83 n~~G~g~~S~~s~~vtT 99 (100)
T d1cfba1 83 NKIGASPPSAHSDSCTT 99 (100)
T ss_dssp ETTEECCCCCCCCCEEE
T ss_pred eCCcCCCCcCCCcCEEe
Confidence 8999988 444444
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.97 E-value=2.4e-05 Score=68.59 Aligned_cols=90 Identities=21% Similarity=0.395 Sum_probs=56.4
Q ss_pred cCCceeeecCCcEEEEEEEEecC---CCCeEEEEECC--e----Eecc------------cCCCCeEEecCCcCccceeE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRG--E----EIGV------------GSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~g--~----~l~~------------~~~~~~~~~~~~~~~~~~~~ 692 (1011)
.+....+..|++++|.|.+.... ....+.|++.. . .+.. ...+|+.+..+. .....+
T Consensus 5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~s 82 (119)
T d1neua_ 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP--SWKDGS 82 (119)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG--GGTBCC
T ss_pred CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEEC--CCCEEE
Confidence 45566789999999999976332 23379998731 1 1100 011233333221 223468
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCC--CeEEEEEEEe
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYG--SDSVEIMLKP 725 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G--~~~~~~~l~V 725 (1011)
|.|.+++.+|+|.|.|.+.|.-+ .....++|.|
T Consensus 83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V 117 (119)
T d1neua_ 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117 (119)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence 99999999999999999998654 4455677766
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=9.1e-06 Score=71.33 Aligned_cols=69 Identities=29% Similarity=0.544 Sum_probs=55.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cc------eee--------------------------cC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SD------KVV--------------------------GN 589 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~------~~~--------------------------~~ 589 (1011)
+|.+...|..+.+.+|++++|.|.+.+.....+.|+|.. .. +.. .+
T Consensus 1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 80 (122)
T d1nezg_ 1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN 80 (122)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence 477888899999999999999999998888899999732 11 000 01
Q ss_pred CCcEEEeecCCCCCEEEEEEEEe
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
..+|+|.+++.+|+|.|.|.+.-
T Consensus 81 ~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEE
T ss_pred EeEEEEcccccCCCEEEEeeEeC
Confidence 13699999999999999998863
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.96 E-value=7.4e-06 Score=70.09 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=54.8
Q ss_pred CceeEEecCcEEEEEEEcCC-----CCeeEEeeC--CeecCC------c--c--cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK-----TGVLQWTKD--DFALGP------H--R--NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~--~~~l~~------~--~--~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
....+++|++|+|.|++.+. ...+.|+|. ++.+.. . . .-...+|+.+..+.....+.|+|.++
T Consensus 8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l 87 (120)
T d2agjh1 8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL 87 (120)
T ss_dssp CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence 44567889999999998752 235789975 322210 0 0 00123689988877777889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 88 ~~eDsAvYyCAr~~ 101 (120)
T d2agjh1 88 DPVDTATYYCARTS 101 (120)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred eeccceEEeeEecC
Confidence 99999999997544
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.94 E-value=1.5e-05 Score=66.07 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+...|. ..|..|++|+|.|........+.++|+|...... +...........+.+.|.+|+.+|+|.|+
T Consensus 2 KPsLsa~P~-~~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~-------~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~ 73 (96)
T d1nkra1 2 KPSLLAHPG-PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTL-------RLIGEHHDGVSKANFSISRMTQDLAGTYR 73 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEE-------EEECEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeCC-CccCCCCcEEEEECCCCCCCEEEEEECCCcCCce-------eeeeeecCCceEEEEEEcccCcccCeEEE
Confidence 466777774 5788999999999998888899999998432110 11101112234567999999999999999
Q ss_pred EEEEeCCCC-CcceeeeEEEEEE
Q psy17146 107 CQVSTGILG-EPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~-~~~~~s~~~~l~V 128 (1011)
|........ .....|..+.|.|
T Consensus 74 C~y~~~~~p~~wS~pSdpLeL~V 96 (96)
T d1nkra1 74 CYGSVTHSPYQVSAPSDPLDIVI 96 (96)
T ss_dssp EEEEBTTBTTCCCCCCCCEEEEE
T ss_pred EEEEcCCCCCcccCCCCCEEEEC
Confidence 987654221 1233455565554
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.94 E-value=3.7e-06 Score=73.17 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=56.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
++..|..+.+.+|++|+|.|..... ...+.||+....-. ........+|+.... ....+.|.|.+++.+
T Consensus 4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~ 81 (119)
T d1f3rb2 4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQPE 81 (119)
T ss_dssp SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCGG
T ss_pred EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC--CCCEEEEEcccCccC
Confidence 5567889999999999999998764 34689998642111 111112234555433 345689999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|....
T Consensus 82 DsavYyCa~~~ 92 (119)
T d1f3rb2 82 DVATYFCYQYN 92 (119)
T ss_dssp GCSEEEEEEES
T ss_pred CCeEEEeeccC
Confidence 99999998754
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=9.6e-06 Score=70.83 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=60.2
Q ss_pred ecCCceeeecCCcEEEEEEEEecCC--CCeEEEEECCe-----Eecc-------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPP--PEKVTWSYRGE-----EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~g~-----~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.|....+.+|++|+|.|....... ...+.|+|... .+.. ....++.+..+. .....+|+|.++
T Consensus 4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I~~l 81 (116)
T d1xeda_ 4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP--ENGTFVVNIAQL 81 (116)
T ss_dssp BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeC--CCCEEEEEEhhh
Confidence 4566778899999999998753321 22578987421 1110 122344443321 233568999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..+|+|.|.|.+.+........+.|+|.+
T Consensus 82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 82 SQDDSGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp CGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred CcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence 99999999999875554556667887754
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=1.2e-05 Score=67.38 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=50.8
Q ss_pred cCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+.+|.+..........|+.++|.|.+.|+ |..+.|+|++||..+... ....... ..++.........+..++.+.
T Consensus 2 ~~~P~V~v~~~~~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~--~~~~~~~--~~dgtf~~~s~l~v~~~~~~~ 77 (99)
T d1lk2b_ 2 QKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV--EMSDMSF--SKDWSFYILAHTEFTPTETDT 77 (99)
T ss_dssp CBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTC--EEEEEEE--CTTCCEEEEEEEEECCCSSCC
T ss_pred CCCCEEEEEcCCCccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCc--EECceeE--CCCCCEEEEEEeEecCcCCCE
Confidence 45666553211224568889999999997 666689999999988632 1111111 123333333333334556668
Q ss_pred EEEEEEcCC
Q psy17146 706 YNCSVSNPY 714 (1011)
Q Consensus 706 Y~C~a~N~~ 714 (1011)
|+|.+....
T Consensus 78 ytC~V~H~s 86 (99)
T d1lk2b_ 78 YACRVKHDS 86 (99)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEeCC
Confidence 999998764
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.93 E-value=7.1e-06 Score=68.65 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=50.1
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHF 703 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~ 703 (1011)
+||.+...+...+..|+.++|.|.+.|+ |..+.|+|++||+++..+....-... ..++. .+.|.+. .++.
T Consensus 2 ~pP~V~v~p~~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~---~~dgtf~~~s~l~v~---~~~~ 75 (100)
T d1muja1 2 EAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFV---NRDYSFHKLSYLTFI---PSDD 75 (100)
T ss_dssp CCCEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEE---CTTSCEEEEEEEEEC---CCTT
T ss_pred CCCEEEEEcCCccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEE---CCCCCEEEEEEeEEc---CCCC
Confidence 4666653222235668899999999998 66669999999988863210000011 11232 3445544 4556
Q ss_pred EEEEEEEEcCC
Q psy17146 704 GVYNCSVSNPY 714 (1011)
Q Consensus 704 G~Y~C~a~N~~ 714 (1011)
+.|+|++....
T Consensus 76 ~~ytC~V~H~s 86 (100)
T d1muja1 76 DIYDCKVEHWG 86 (100)
T ss_dssp CCEEEEEECTT
T ss_pred CEEEEEEEECC
Confidence 68999999764
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.93 E-value=1.3e-05 Score=67.64 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=57.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--Ceec------CCcc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++|+|.|.+.+. ...+.|+|. |+.+ .... .-...+|+.+..+.......|.|.+
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s 85 (119)
T d1eapb1 6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS 85 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence 4556678899999999999974 336889875 2222 1100 0112369999988877788999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAr~~ 100 (119)
T d1eapb1 86 LTSEDSAVYFCKRSY 100 (119)
T ss_dssp CCGGGCEEEEEEECC
T ss_pred ccCCcceEEEEEEec
Confidence 999999999997543
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.93 E-value=2.2e-05 Score=66.38 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=58.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...-.+++|+++.|.|.+.+. ...+.|+|.- +.+ ... . .-+..+|+.|..+.......|.|.+
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s 85 (119)
T d1rz7h1 6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS 85 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence 4455678899999999999984 3368898753 222 100 0 0122369999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAr~~ 100 (119)
T d1rz7h1 86 LRSEDTAVYYCAADP 100 (119)
T ss_dssp CCGGGCEEEEEEECT
T ss_pred cCcccceEEEEeecC
Confidence 999999999997654
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.91 E-value=2.1e-05 Score=66.09 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=57.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+.+|++|+|.|.+.+. ...+.|+|.- +.+ .... .-...+|+.+..+.......|.|.+
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~ 85 (118)
T d1nlbh1 6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS 85 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence 4556678999999999999874 3368898753 222 1111 0112369999988878888999999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (118)
T d1nlbh1 86 LKNEDTATYFCARF 99 (118)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccCcceEEEEeee
Confidence 99999999999643
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.90 E-value=1.4e-05 Score=69.24 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=52.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc-----ee--------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----KV--------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~-----~~--------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|.........+.|++.... +. .....+|+|.+++.+
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~ 82 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS 82 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence 45668889999999999999998877789999985421 00 012357999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 83 Dsg~Y~Ca~~~ 93 (114)
T d2cdea1 83 DSASYICVVSD 93 (114)
T ss_dssp GCSEEEEEEEC
T ss_pred hCcccceeeec
Confidence 99999999986
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=4.8e-05 Score=65.64 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=54.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--Ce-E--e--------cccCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GE-E--I--------GVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~-~--l--------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
.|....+.+|++|+|.|.+.+......+.||+. |+ + + ......++.+..+. .+....|.|.+++.
T Consensus 5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I~~~~~ 82 (114)
T d3bp5a1 5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP--NRHDFHMNILDTRR 82 (114)
T ss_dssp ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT--TSSEEEEEESSCCG
T ss_pred CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC--CCCEEEEEECccCc
Confidence 456677999999999999876544337899983 22 1 1 11234566655432 23356899999999
Q ss_pred CCCEEEEEEEEcCC
Q psy17146 701 DHFGVYNCSVSNPY 714 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~~ 714 (1011)
+|+|.|.|.+....
T Consensus 83 ~Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 83 NDSGIYLCGAISLH 96 (114)
T ss_dssp GGCEEEEEEEECSS
T ss_pred CCCeEEEEEEEeCC
Confidence 99999999887544
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=4.9e-06 Score=69.30 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=60.7
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+..+|.. .|..|++|+|.|...-....+.++|++........... .......+.|.+|+.+|+|.|+
T Consensus 4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~~~~~~f~L~keg~~~~~~~~~~~---------~~~~~a~F~i~~v~~~~~G~Y~ 73 (96)
T d1ugna1 4 KPTLWAEPGS-VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQ---------ELVKKGQFPIPSITWEHTGRYR 73 (96)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCH---------HHHTTTEEEESSCCGGGCEEEE
T ss_pred CCEEEeECCC-ccCCCCcEEEEEeCCCCCCEEEEEECCCCcccEEEccC---------CCCCEEEEEEEecCHHHCCeEE
Confidence 3667777874 57899999999998766668999998853211110000 0112347999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|....... .....|..+.|.|.
T Consensus 74 C~y~~~~~-~~S~~Sd~leL~Vt 95 (96)
T d1ugna1 74 CYYGSDTA-GRSESSDPLELVVT 95 (96)
T ss_dssp EEEEETTT-EECCCCCCEEEEEE
T ss_pred EEEeCCCC-CccccCCCEEEEEe
Confidence 98764321 12345566666664
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.88 E-value=2.1e-05 Score=66.43 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=58.3
Q ss_pred cCCceeEEecCcEEEEEEEcCCC----CeeEEeeC--CeecC------Cc--c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT----GVLQWTKD--DFALG------PH--R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~----~~v~W~k~--~~~l~------~~--~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|.+.+.. ..+.|+|. |+.+. .. . .-...+|+++..+.......|.|.+
T Consensus 6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s 85 (119)
T d1ncwh1 6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS 85 (119)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence 44556788999999999999732 25788764 43321 10 0 1112369999998888889999999
Q ss_pred cccCCCceEEEEEEeC
Q psy17146 97 VMLDDDARYQCQVSTG 112 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~ 112 (1011)
++.+|++.|.|.....
T Consensus 86 L~~eDTAvYYCAr~~~ 101 (119)
T d1ncwh1 86 VTTEDTATYYCAGLLW 101 (119)
T ss_dssp CCGGGCEEEEEEEEET
T ss_pred cccCCceEEEEeEecc
Confidence 9999999999986543
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.88 E-value=3.4e-05 Score=65.01 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=58.8
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc-----ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH-----RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~-----~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.+.....+++|++++|.|.+++. ...+.|+|. |+.+. .. ..-...+|+.+..+.......|.|.
T Consensus 5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~ 84 (118)
T d1ct8b1 5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS 84 (118)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence 34566788899999999999973 336788865 33221 10 0122346999998887888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 85 ~L~~eDtAvYYCAr~~ 100 (118)
T d1ct8b1 85 SLTTEDSAIYYCARYR 100 (118)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccCCCcceEEEEeeec
Confidence 9999999999997654
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=7.7e-05 Score=61.75 Aligned_cols=73 Identities=15% Similarity=0.280 Sum_probs=54.3
Q ss_pred cCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..++.++|.|.+.+++|++.++|+++++.+........ .......+...+.|.|.. .+...|+|.+.+.....
T Consensus 14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~-~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~ 86 (95)
T d1dr9a2 14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS-QDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRV 86 (95)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE-ECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCE
T ss_pred CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeE-ecCCCccEEEEEEEEccC---CccceEEEEEEecCCCC
Confidence 35778899999778899999999999988765443332 233334777788898853 45679999999986643
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=5e-06 Score=72.83 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=51.7
Q ss_pred CCCCCC-cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 813 HDSETG-SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 813 G~g~~s-s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
|.|.+| +..++|++++|..+|.++.... +.+...|+|+|++++..||.+.+|+|+||..+...
T Consensus 1 G~s~~S~~v~v~T~~~~P~~pp~~~~~~~----~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~ 64 (117)
T d1wj3a_ 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA----TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN 64 (117)
T ss_dssp CCCCCCCCCCCCCSCCCCCCCCCSCBCCE----ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS
T ss_pred CcCCCCCCEEEEcCCCCcCCCCcceEEee----cCCEEEEEEeecccccCCCceeEEEEEEEecCCCc
Confidence 678888 7789999999999998876544 33445679999999999999999999999876544
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.87 E-value=1.5e-05 Score=67.10 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=57.9
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc---c--CCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR---N--LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~---~--~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....+++|++|+|.|.+.+. ...+.|+|.- +.+ .... . -...+|+.+..+.......|.|.
T Consensus 5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~ 84 (118)
T d2jelh1 5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA 84 (118)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence 35666788999999999999974 3368898753 222 1110 0 11136999998887888899999
Q ss_pred ecccCCCceEEEEEE
Q psy17146 96 PVMLDDDARYQCQVS 110 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~ 110 (1011)
+++.+|++.|.|...
T Consensus 85 sL~~eDTAvYYCAr~ 99 (118)
T d2jelh1 85 RLTSEDSAIYYCARV 99 (118)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccccCcceeeeEEEe
Confidence 999999999999653
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.87 E-value=1.4e-05 Score=67.21 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=59.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+.+|++|+|.|.+.+. ...+.|+|. |+.+. ... .-...+|+++..+.......|.|.+
T Consensus 6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~ 85 (117)
T d1iqdb1 6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS 85 (117)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence 4556678899999999999873 336889874 33221 100 1123479999998888888999999
Q ss_pred cccCCCceEEEEEEeC
Q psy17146 97 VMLDDDARYQCQVSTG 112 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~ 112 (1011)
++.+|++.|.|.....
T Consensus 86 L~~eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 86 LRSDDTAVYYCAVPDP 101 (117)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred cCcCcceEEEEeEcCC
Confidence 9999999999987543
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.86 E-value=3.6e-05 Score=63.98 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=51.5
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHF 703 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~ 703 (1011)
.||.+..........++.++|.|.+.|+ |..+.|+|++||+.+..+.... ....+ .++ ..+.|.|. .++.
T Consensus 2 ~PP~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~-~~~~~--~dgty~~~s~L~v~---~~~~ 75 (98)
T d1hdmb1 2 RPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHK-TAQPN--GDWTYQTLSHLALT---PSYG 75 (98)
T ss_dssp BCCEEEEEECCCCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBC-CCEEC--SSSCEEEEEEEEEC---CCTT
T ss_pred CCCEEEEEcCCCccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeC-ceEEC--CCCCEEEEEEeEcC---CCCC
Confidence 3565553222224567889999999998 7677999999999886422111 11111 122 23455554 4444
Q ss_pred EEEEEEEEcCCCCe
Q psy17146 704 GVYNCSVSNPYGSD 717 (1011)
Q Consensus 704 G~Y~C~a~N~~G~~ 717 (1011)
..|+|.+.......
T Consensus 76 ~~ytC~V~H~sl~~ 89 (98)
T d1hdmb1 76 DTYTCVVEHIGAPE 89 (98)
T ss_dssp CCEEEEEECTTSSS
T ss_pred CEEEEEEEeCCCCC
Confidence 57999999875543
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.86 E-value=2.2e-05 Score=66.64 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=51.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|........ .+.||+. |+... .....++.... .+....|+|.+++.+|
T Consensus 8 P~slsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~----~~~~~~L~I~~~~~~D 82 (106)
T d1i8ka_ 8 PASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG----TGTDFVFTIENTLSED 82 (106)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeC----CCCeeeecccCCcccc
Confidence 456678999999999987765555 6999973 22111 12334554432 2345789999999999
Q ss_pred CEEEEEEEEcC
Q psy17146 703 FGVYNCSVSNP 713 (1011)
Q Consensus 703 ~G~Y~C~a~N~ 713 (1011)
+|.|.|.+.+.
T Consensus 83 sa~YyCa~~~~ 93 (106)
T d1i8ka_ 83 VGDYYCLQSFN 93 (106)
T ss_dssp CEEEEEEECSS
T ss_pred CEEEeEecCcc
Confidence 99999987543
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.86 E-value=2.7e-05 Score=65.52 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=58.3
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.....+++|++++|.|++++. ...+.|+|. |+.+. ... .-...+|+.+..+.......|+|.++
T Consensus 6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L 85 (116)
T d7fabh1 6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV 85 (116)
T ss_dssp EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence 4455678899999999999973 347889875 32221 000 11223699999888888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 86 ~~eDtAvYyCAr~~ 99 (116)
T d7fabh1 86 TAADTAVYYCARNL 99 (116)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred ccccceEEEeeeec
Confidence 99999999998654
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=2.9e-05 Score=66.61 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=52.0
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEe-cCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFS-IPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g-~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.|.|..+. .+.+|+.++|+|.+.+ .|.+ ..|.|+++++.+....... ...........+.|++.-...+|...|
T Consensus 4 ~P~I~~~~--~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~--~~~~~~~~~~~s~l~~~~~~~D~g~~l 79 (109)
T d1vcaa1 4 DPEIHLSG--PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE--DADRKSLETKSLEVTFTPVIEDIGKVL 79 (109)
T ss_dssp CCEEEESS--CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS--CCSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred CCEEecCC--CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccc--ccccCCcceeeEEEEccCChHHCCcEE
Confidence 46666443 3779999999999886 4643 2689999999876421110 000000011235667664444444489
Q ss_pred EEEEEcCCCC
Q psy17146 707 NCSVSNPYGS 716 (1011)
Q Consensus 707 ~C~a~N~~G~ 716 (1011)
+|.|+|.++.
T Consensus 80 tC~a~~~~~~ 89 (109)
T d1vcaa1 80 VCRAKLHIDE 89 (109)
T ss_dssp EEEEEECSCC
T ss_pred EEEEEcCcCC
Confidence 9999999864
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2.5e-05 Score=65.15 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.+..+|.. .|..|++|+|.|........+.++|++........ ...........+.+.|.+|+.+|+|.|+
T Consensus 4 kPsLsa~P~~-~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~------~~~~~~~~~~~a~F~l~~v~~~~~G~Y~ 76 (98)
T d1ugna2 4 KPTLSAQPSP-VVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCL------NSQPHARGSSRAIFSVGPVSPSRRWWYR 76 (98)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECSSCCSEEEEEEC------CEE------EC------CCEEEEEECCCCTTSCEEEE
T ss_pred CCEEEeeCCC-ccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEee------eeEEcCCCceEEEEEeeecccCCCeEEE
Confidence 4778888865 59999999999998877778999999854321110 0000011234567999999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.....
T Consensus 77 C~y~~~ 82 (98)
T d1ugna2 77 CYAYDS 82 (98)
T ss_dssp EEEECT
T ss_pred EeeEcC
Confidence 987653
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.84 E-value=2.8e-05 Score=65.66 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=57.2
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.....+++|++++|.|.+++. ...+.|+|. |+.+. ... .-...+|+.+..+...+...|.|.
T Consensus 7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~ 86 (120)
T d1dlfh_ 7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN 86 (120)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence 445568899999999999873 347889874 33221 100 012236999998888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 87 ~L~~eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 87 TLRAEDTGIYYCTGIY 102 (120)
T ss_dssp SCCGGGCEEEEEEEEB
T ss_pred eccCCCceEEEeeEec
Confidence 9999999999997654
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.84 E-value=1.8e-05 Score=66.54 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=58.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|+++.|.|++++. ...+.|+|. |+.+. .. . .-...+|+++..+.......|.|.+
T Consensus 6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~ 85 (117)
T d1jnhb1 6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS 85 (117)
T ss_dssp ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence 4455677899999999999973 336889874 32221 00 0 1122369999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAr~~ 100 (117)
T d1jnhb1 86 LTSEDSAVYSCSRGR 100 (117)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCCCcceEEEEeecC
Confidence 999999999997644
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.9e-06 Score=72.72 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCC-CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---
Q psy17146 760 KKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 760 ~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A--- 811 (1011)
.+| +|.++++..++.+++.++| ++.+++++|++|.|+++.... .|+++|.| |
T Consensus 9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~N~ 88 (105)
T d1x3da1 9 CEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARND 88 (105)
T ss_dssp SCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEES
T ss_pred CCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEECC
Confidence 444 8999999999999999999 888899999999999986544 89999999 5
Q ss_pred CCCCCCC
Q psy17146 812 GHDSETG 818 (1011)
Q Consensus 812 ~G~g~~s 818 (1011)
.|.|++|
T Consensus 89 ~G~s~~S 95 (105)
T d1x3da1 89 YGTSGFS 95 (105)
T ss_dssp SCBCCCC
T ss_pred CeEcCCC
Confidence 8999988
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.84 E-value=3.6e-05 Score=65.47 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=58.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecCC------cc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALGP------HR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~~------~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+++|++++|.|.+.+. ...+.|+|. |+.+.. .. .-...+|+.+..+...+...|+|.+
T Consensus 6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~ 85 (120)
T d1pg7x1 6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR 85 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence 4555678899999999999874 336889875 332210 00 0112369999888878888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 l~~eDtA~YYCAr~~ 100 (120)
T d1pg7x1 86 LTSNDSAVYYCARED 100 (120)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCcceEEEeeecC
Confidence 999999999998654
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.84 E-value=1.9e-05 Score=67.04 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=51.0
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--ce---------------------eecCCCcEEEeecCCCCCE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DK---------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~---------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
...|..+.+.+|++++|.|.........+.|+|... .. ...++..|.|.+++.+|+|
T Consensus 5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 84 (107)
T d1c5cl1 5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA 84 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence 455778889999999999998877777899998531 11 0122468999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|.+.+
T Consensus 85 ~YyCa~~~ 92 (107)
T d1c5cl1 85 DYYCLQYA 92 (107)
T ss_dssp EEEEEECS
T ss_pred EEEEecCc
Confidence 99997654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.83 E-value=3e-05 Score=65.90 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|........ .+.|++. |.... .....++.... .+....|+|.+++.+|
T Consensus 7 P~~l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~L~I~~~~~~D 81 (106)
T d1a0ql1 7 PSSLSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG----SGRDYSFSISNLEPED 81 (106)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEECSCCGGG
T ss_pred CCEEEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeec----CCCEeeeEehhhcccC
Confidence 456678999999999988766555 6999983 11111 11233444433 2345789999999999
Q ss_pred CEEEEEEEEc
Q psy17146 703 FGVYNCSVSN 712 (1011)
Q Consensus 703 ~G~Y~C~a~N 712 (1011)
+|.|.|.+.+
T Consensus 82 sA~YyCa~~~ 91 (106)
T d1a0ql1 82 IATYYCLQYY 91 (106)
T ss_dssp CSEEEEEECS
T ss_pred CEeEEEEEeC
Confidence 9999998754
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.83 E-value=1.8e-05 Score=67.05 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=56.9
Q ss_pred CceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCc--c--cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPH--R--NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~--~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
..-.+++|++++|.|++.+. ...+.|+|.- +.+ ... . .-...+|+.+..+.......|.|.+++.
T Consensus 7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~ 86 (119)
T d1kxvc_ 7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP 86 (119)
T ss_dssp CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence 34578899999999999874 3368898763 222 100 0 1112369999988878888999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|++.|.|....
T Consensus 87 eDtA~YYCAr~~ 98 (119)
T d1kxvc_ 87 DDTAMYYCKPSL 98 (119)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCcceEeeeecc
Confidence 999999998654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.83 E-value=3.3e-05 Score=65.68 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=51.7
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--Ce---Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GE---EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~---~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.++...+.+|++|+|.|...+.... .+.|++. |. .+.. +...++.... .+....|.|.+++.
T Consensus 5 tQp~s~~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~~ 79 (106)
T d1lk3l1 5 TQPPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG----SGTDFTLTIDPVEA 79 (106)
T ss_dssp ECCSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCG
T ss_pred eeCCeEEECCCCCEEEEEEeCCCCCc-cEEEEecCCCCCcEEEEEecccccCCcCCceeeec----CCCEEEeEECCcCh
Confidence 34556678999999999998765555 7999973 21 1111 1234444433 23457999999999
Q ss_pred CCCEEEEEEEE
Q psy17146 701 DHFGVYNCSVS 711 (1011)
Q Consensus 701 ~d~G~Y~C~a~ 711 (1011)
+|+|.|.|.+.
T Consensus 80 ~Dsa~YyCa~~ 90 (106)
T d1lk3l1 80 DDTAIYFCQQS 90 (106)
T ss_dssp GGCEEEEEEEC
T ss_pred hhCCCcccccc
Confidence 99999999654
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.83 E-value=2.4e-05 Score=66.73 Aligned_cols=65 Identities=20% Similarity=0.445 Sum_probs=51.0
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-----------------------eecCCCcEEEeecCCCCCE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
...|..+.+.+|++++|.|.........+.|++..... ...+...|+|.+++.+|+|
T Consensus 5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1j1pl_ 5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence 45677889999999999999877767789999864210 1123368999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|.+.+
T Consensus 85 ~YyCa~~~ 92 (107)
T d1j1pl_ 85 MYFCQQAN 92 (107)
T ss_dssp EEEEEECS
T ss_pred EEEEEcCC
Confidence 99997654
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=4.5e-05 Score=62.86 Aligned_cols=82 Identities=16% Similarity=0.290 Sum_probs=49.4
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.+... ....++.++|.|.+.|+ |..+.|+|++||+.+..+.........+ .++.........+...+...|
T Consensus 3 vpP~V~v~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~--~~~t~~~~s~l~v~~~~~~~y 77 (94)
T d1de4a1 3 VPPLVKVT---HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPN--GDGTYQGWITLAVPPGEEQRY 77 (94)
T ss_dssp BCCEEEEE---EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEEC--TTSCEEEEEEEEECTTCGGGE
T ss_pred CCCEEEEE---EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeC--CCceEEEEEEEEECCCCCCEE
Confidence 45665421 12246778999999996 7777999999999986432222222222 122222222233344455679
Q ss_pred EEEEEcCC
Q psy17146 707 NCSVSNPY 714 (1011)
Q Consensus 707 ~C~a~N~~ 714 (1011)
+|.+....
T Consensus 78 tC~V~H~s 85 (94)
T d1de4a1 78 TCQVEHPG 85 (94)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99999873
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.82 E-value=1.7e-05 Score=66.98 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=56.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++|+|.|++.+. ...+.|++. |+.+. ... .-...+|+.+..+.......|.|.+
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~ 85 (115)
T d1f3dh1 6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS 85 (115)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence 3445568899999999999874 336889875 32221 110 0112369999888777788899999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 86 l~~eDtAvYYCAr~ 99 (115)
T d1f3dh1 86 LTFEDSAVYYCAND 99 (115)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred cCcCCcEEEEEecc
Confidence 99999999999753
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.82 E-value=2.2e-05 Score=65.56 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=44.6
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...++..+|.|.+.|+ |..+.|+|++||..+..+....-... ..++..+.+....+...+...|+|.|....-
T Consensus 15 ~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~---~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl 88 (98)
T d1d5mb1 15 QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQ---NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV 88 (98)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEE---CSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEe---CCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence 3446777899999996 66669999999998863210000011 1234445555555667777899999998754
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.81 E-value=2.3e-05 Score=66.65 Aligned_cols=66 Identities=15% Similarity=0.376 Sum_probs=51.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce--------------------e---ecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK--------------------V---VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~--------------------~---~~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++|+|.|...+.....+.|++..... . ..+...|+|.++..+|+
T Consensus 4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1ospl1 4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV 83 (107)
T ss_dssp EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence 345688899999999999999987766689999853110 0 12346899999999999
Q ss_pred EEEEEEEEe
Q psy17146 604 GRYYCKASV 612 (1011)
Q Consensus 604 G~Y~C~a~n 612 (1011)
|.|.|.+..
T Consensus 84 a~YyCa~~~ 92 (107)
T d1ospl1 84 ATYFCQQYW 92 (107)
T ss_dssp SEEEEEECS
T ss_pred CcEEEeecc
Confidence 999998764
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.81 E-value=2.1e-05 Score=66.58 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=59.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCc---c--cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPH---R--NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~---~--~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....+++|++++|.|++++. ...+.|+|.- +.+ ... . .-...+|+.+..+.......|.|.
T Consensus 6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~ 85 (122)
T d1vgeh1 6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS 85 (122)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence 34667789999999999999974 3368898753 222 100 0 011237999999888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 86 ~L~~eDtA~YYCAr~~ 101 (122)
T d1vgeh1 86 SLRPEDTAVYYCARDP 101 (122)
T ss_dssp SCCGGGCEEEEEEEET
T ss_pred ccCCCcceEEEEeecC
Confidence 9999999999997653
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.80 E-value=3.1e-05 Score=66.05 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=51.4
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e---------------------eecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K---------------------VVGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~---------------------~~~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++|+|.|.........+.|++.... . .......|+|.+++.+|+
T Consensus 4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS 83 (107)
T d1kcvl1 4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD 83 (107)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence 34668889999999999999998777778999985311 0 012235799999999999
Q ss_pred EEEEEEEEe
Q psy17146 604 GRYYCKASV 612 (1011)
Q Consensus 604 G~Y~C~a~n 612 (1011)
|.|.|-+..
T Consensus 84 a~YyCa~~~ 92 (107)
T d1kcvl1 84 ADYYCGQSY 92 (107)
T ss_dssp EEEEEEECS
T ss_pred ceEEEEecC
Confidence 999998753
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.80 E-value=8.6e-05 Score=64.26 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=53.7
Q ss_pred CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC--CeEec---c----------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR--GEEIG---V----------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~--g~~l~---~----------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+....+.+|++|+|.|...+. ... .+.|++. |+... . ...+++.+..+. ......|+|.++
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I~~~ 83 (116)
T d1tvda_ 7 SPDQTVASGSEVVLLCTYDTVYSNP-DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL--TQKAFHLVISPV 83 (116)
T ss_dssp SCCEEEETTCCEEECCEEECCSSSC-CEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG--GGTEEEEEESSC
T ss_pred CCCEEEcCCCCEEEEEEEcCCccCC-cEEEEEeCCCCceEEeeecccccccccCccceEEEEEecC--ceeEEeeeecCc
Confidence 456779999999999998654 344 7999972 22111 0 122355544321 223468999999
Q ss_pred CCCCCEEEEEEEEcCCCCe
Q psy17146 699 RHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~ 717 (1011)
+.+|+|.|.|.+....+..
T Consensus 84 ~~~Dsg~YyCa~~~~~~~~ 102 (116)
T d1tvda_ 84 RTEDSATYYCAFTLPPPTD 102 (116)
T ss_dssp CGGGCEEEEEEEECTTTTC
T ss_pred cccccccceeeEecCCCCc
Confidence 9999999999887665443
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=6e-06 Score=68.89 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=52.8
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc------------------cccccccc---c---CCCCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS------------------VSNVHLDY---A---GHDSE 816 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~------------------~p~~~Y~f---A---~G~g~ 816 (1011)
.+|.++++..++.+++.|+| ++.+++++|++|.|+++.... .|++.|.| | .|.|+
T Consensus 2 ~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~ 81 (93)
T d1x4xa1 2 DQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGP 81 (93)
T ss_dssp CCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEEEESCSEEEEESCCSSCEEEEEEEEECSSCCCC
T ss_pred cCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCcceEeecCCccEEEEcccceeeEEEEEEEEEECCcCcC
Confidence 37888999999999999999 777888999999999987654 89999999 5 88888
Q ss_pred CC-cccccc
Q psy17146 817 TG-SESVHT 824 (1011)
Q Consensus 817 ~s-s~~~~t 824 (1011)
+| ...++|
T Consensus 82 ~S~~~~~~T 90 (93)
T d1x4xa1 82 FSEVVACVT 90 (93)
T ss_dssp BCCCEEEEC
T ss_pred CCCcEEEEe
Confidence 88 344444
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.79 E-value=1.7e-05 Score=66.83 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=58.8
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|.+.+. ...+.|+|.- +.+ .... .-...+|+.+..+.......|.|.+
T Consensus 5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s 84 (117)
T d1um5h1 5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS 84 (117)
T ss_dssp ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence 4566788999999999999873 3378998763 222 1000 1112369999988888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 85 L~~eDtAvYYCAr~~ 99 (117)
T d1um5h1 85 LTSEDSAVYYCARSS 99 (117)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCCCcceEEEEeecc
Confidence 999999999997544
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.79 E-value=4.2e-05 Score=64.83 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.....+++|++|+|.|++.+. ...+.|+|.- +.+ .... .-...+|+.+..+.......|.|.++
T Consensus 7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L 86 (123)
T d1mqkh_ 7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL 86 (123)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence 345578899999999999874 3368898753 221 1111 11234699999887778889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 87 ~~eDtAvYYCAr~~ 100 (123)
T d1mqkh_ 87 KSEDTAMYYCVRHE 100 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccCcccceeEEecC
Confidence 99999999997654
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=5.8e-06 Score=69.47 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=46.1
Q ss_pred CCCCCccc-ccccccccccc--cCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCC
Q psy17146 763 PPGNGIEH-HVTADGEKNQC--KESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 763 ~p~~~~~~-~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~ 814 (1011)
|+....+. ....+++.|+| |..|++++|++|+|+++.... .|+++|.| | .|.
T Consensus 4 p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~ 83 (97)
T d2crza1 4 PCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGF 83 (97)
T ss_dssp CCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSSCB
T ss_pred cCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecCCceEEEEcCCCCCEEEEEEEEEecCCeE
Confidence 33444433 45667899999 556778899999999997654 88999999 4 899
Q ss_pred CCCC-ccccccc
Q psy17146 815 SETG-SESVHTR 825 (1011)
Q Consensus 815 g~~s-s~~~~t~ 825 (1011)
|++| ...+.|.
T Consensus 84 s~~S~~~~~~T~ 95 (97)
T d2crza1 84 GPFSEKCDITTA 95 (97)
T ss_dssp CCCCCCEEEECC
T ss_pred cCCcCCCeEEeC
Confidence 9988 3334443
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.78 E-value=1.8e-05 Score=66.35 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=58.7
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCc-----ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPH-----RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~-----~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|++.+. ...+.|+|.- +.+ ... -.-+..+|+.|..+...+...|.|.+
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~ 85 (117)
T d1jpth1 6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS 85 (117)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence 3455688899999999999974 3378888753 221 111 01223479999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAr~~ 100 (117)
T d1jpth1 86 LRAEDTAVYYCARDT 100 (117)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCCceEEEEeecC
Confidence 999999999997644
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=3.6e-06 Score=72.06 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=47.5
Q ss_pred CCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CC
Q psy17146 763 PPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G 813 (1011)
||.++++.+++.+++.|+| |..+++++|++|.++++.... .|+++|.| | .|
T Consensus 5 pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~G 84 (104)
T d1bpva_ 5 PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAG 84 (104)
T ss_dssp CCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTS
T ss_pred CCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEECCC
Confidence 8999999999999999999 557788999999999887543 88999999 5 67
Q ss_pred C-CCCC
Q psy17146 814 D-SETG 818 (1011)
Q Consensus 814 ~-g~~s 818 (1011)
. |++|
T Consensus 85 ~~s~~S 90 (104)
T d1bpva_ 85 AISPPS 90 (104)
T ss_dssp CEEEEE
T ss_pred CCCCCc
Confidence 5 5555
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.77 E-value=2.6e-05 Score=65.72 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=58.2
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc---c--cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....+.+|++++|.|++++. ...+.|+|. |+.+. .. . .-....|+.+..+.......|.|.
T Consensus 5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~ 84 (117)
T d1mfah1 5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS 84 (117)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence 35667788999999999999974 336788764 33221 00 0 112235899988887888899999
Q ss_pred ecccCCCceEEEEEE
Q psy17146 96 PVMLDDDARYQCQVS 110 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~ 110 (1011)
+++.+|++.|.|...
T Consensus 85 ~L~~eDtAvYYCAr~ 99 (117)
T d1mfah1 85 SLTSEDSAVYYCTRG 99 (117)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccCCCcceEEEEecc
Confidence 999999999999753
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.77 E-value=3.7e-05 Score=66.40 Aligned_cols=66 Identities=15% Similarity=0.350 Sum_probs=52.6
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Ccee-----------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDKV-----------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~~-----------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|...+.....+.|+|.. .... ......|+|.+++.+
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 456788899999999999999988777789999853 1100 012358999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 83 Dsg~YyCa~~~ 93 (113)
T d2bnqd1 83 DSATYLCAVRP 93 (113)
T ss_dssp GCEEEEEEEEE
T ss_pred CCcEEeEeEec
Confidence 99999999985
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.76 E-value=2.8e-05 Score=64.38 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=58.5
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc-----c--cCCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH-----R--NLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~-----~--~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
+.....+++|++++|.|.+++. ...+.|+|.- +.+. .. . .-...+|+++..+.......|.|
T Consensus 6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i 85 (109)
T d2ck0h1 6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM 85 (109)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence 4456788999999999999973 3368888753 2221 10 0 11223699999988888889999
Q ss_pred eecccCCCceEEEEEEe
Q psy17146 95 YPVMLDDDARYQCQVST 111 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~ 111 (1011)
.+++.+|++.|.|.-..
T Consensus 86 ~sL~~eDTAvYYCAr~~ 102 (109)
T d2ck0h1 86 NNLKTEDTGIYYCVRGR 102 (109)
T ss_dssp CSCCGGGCEEEEEEEEC
T ss_pred cCCCHhHCEEEEEEEcC
Confidence 99999999999998543
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.76 E-value=3e-05 Score=64.93 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=49.6
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.+...+...+..|+.++|.|.+.|+ |..+.|+|++||+++..+....-...+........+.|.+.. .+...|
T Consensus 4 v~P~V~v~~~~~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~y 80 (101)
T d1fnga1 4 VAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFY 80 (101)
T ss_dssp BCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCE
T ss_pred cCCeEEEeCCCcccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEE
Confidence 3555542222224567888999999998 767799999999988642110101111100011345666654 334479
Q ss_pred EEEEEcCC
Q psy17146 707 NCSVSNPY 714 (1011)
Q Consensus 707 ~C~a~N~~ 714 (1011)
+|.+....
T Consensus 81 tC~V~H~s 88 (101)
T d1fnga1 81 DCEVDHWG 88 (101)
T ss_dssp EEEEECTT
T ss_pred EEEEEECC
Confidence 99998764
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=4.6e-05 Score=66.36 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=50.4
Q ss_pred eeEEecCcEEEEEEEcCCC---CeeEEe-eCCe-ec---C------CcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 37 QTAVVGSRVTLPCRVIDKT---GVLQWT-KDDF-AL---G------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~~~---~~v~W~-k~~~-~l---~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
..+.+|++|+|.|...... .-+.|+ +... .+ . ........+|+.+..+.....++|+|.+++.+|+
T Consensus 10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 89 (118)
T d1yjdc1 10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT 89 (118)
T ss_dssp EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence 4677899999999997632 223454 4321 11 0 0001112256777766667788999999999999
Q ss_pred ceEEEEEEeC
Q psy17146 103 ARYQCQVSTG 112 (1011)
Q Consensus 103 G~Y~C~~~~~ 112 (1011)
|.|.|.+...
T Consensus 90 avYyCa~~~~ 99 (118)
T d1yjdc1 90 DIYFCKIEVM 99 (118)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEecc
Confidence 9999987653
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.75 E-value=2.3e-05 Score=64.85 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=53.4
Q ss_pred eEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc--c--cCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 38 TAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH--R--NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~--~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
.|++|++++|.|++++. ...+.|+|.- +.+. .. . .-...+|+.+..+.......|.|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 46789999999999873 3468898763 2221 00 0 1122369999998888888999999999999
Q ss_pred ceEEEEEE
Q psy17146 103 ARYQCQVS 110 (1011)
Q Consensus 103 G~Y~C~~~ 110 (1011)
+.|.|...
T Consensus 84 AvYyCA~~ 91 (107)
T d1sjva_ 84 AVYYCYTH 91 (107)
T ss_dssp SEEEEEEC
T ss_pred eeeeEecc
Confidence 99999754
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.75 E-value=6.2e-05 Score=62.75 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=52.0
Q ss_pred ecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 145 TTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..|+.++|.|.+.+.+|. ..++|++||..+..+.............+...+.|.+.. ++.+.|+|++.+....
T Consensus 14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl~ 88 (100)
T d1muja1 14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDIYDCKVEHWGLE 88 (100)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTSS
T ss_pred cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCEEEEEEEECCCC
Confidence 3457889999997777774 789999999888655433222223333566677787754 5677899999997543
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00016 Score=61.72 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=51.6
Q ss_pred CeeeecCCCcEEEEEEccCCCC-CcEEEEEeCC--ce---eee---------ceeEEEeeecCCceEEEEEEEEEeeccC
Q psy17146 141 DTLYTTEDREIELECISANGKP-PAEITWIDGT--GT---VMS---------NVRVTEEASVDGRRTTVKSTLVLTPKKE 205 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~--~~---l~~---------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 205 (1011)
+.+.+.+|+.++|.|....... ...+.|+|.. .. +.. ..++........+ ...|.|.+++.
T Consensus 4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~----~~~L~I~~l~~ 79 (108)
T d1hkfa_ 4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAG----FFTVTMTDLRE 79 (108)
T ss_dssp EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTT----EEEEEECSCCG
T ss_pred EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCC----EEEEEEhhhCC
Confidence 4677889999999998333333 3467899732 11 110 0111111111111 25899999999
Q ss_pred cCCcEEEEEEEeCCCCc-eeEEEEEEEE
Q psy17146 206 HHNTTFTCQAQNTADRT-YKVARLKLLV 232 (1011)
Q Consensus 206 ~d~G~Y~C~a~n~~g~~-~~s~~v~v~v 232 (1011)
+|+|.|.|.+....... .....+.|.|
T Consensus 80 ~DsG~Y~C~v~~~~~~~~~~~~~~~l~V 107 (108)
T d1hkfa_ 80 EDSGHYWCRIYRPSDNSVSKSVRFYLVV 107 (108)
T ss_dssp GGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence 99999999988554432 3344444443
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.74 E-value=7.7e-05 Score=63.78 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=68.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|++.+. ...+.|+|. |+.+. ... .-...+|+.+..+.......|.|.+
T Consensus 6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~ 85 (135)
T d1ieha_ 6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS 85 (135)
T ss_dssp EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence 3445678899999999999973 336889865 32221 100 1122479999998888888999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCee
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI 137 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i 137 (1011)
++.+|++.|.|....... ...--.-+.|+|.-....|.|
T Consensus 86 L~~eDTAvYYCAr~~~~~--~d~WGqGT~VTVsSas~~p~~ 124 (135)
T d1ieha_ 86 LKSEDTAVYYCAKYSGGA--LDAWGQGTQVTVSSQSEQKLI 124 (135)
T ss_dssp CCSSSCEEEEEEEBSSSS--BCCCSCCEEEEECSSCCCCCC
T ss_pred eCcccceeeEEEEecCCc--cceeCCCEEEEEECCCCCCCe
Confidence 999999999997654321 112233366777655444443
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.74 E-value=3.4e-05 Score=65.31 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=57.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc--c--cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH--R--NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~--~--~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+...-.+++|++++|.|++.+. ...+.|+|.. +.+. .. . .-...+|+.+..+.......|.|.++
T Consensus 6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l 85 (120)
T d1dn0b1 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (120)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence 3445578899999999999973 3368898763 2221 10 0 11123699999988888889999999
Q ss_pred ccCCCceEEEEEE
Q psy17146 98 MLDDDARYQCQVS 110 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~ 110 (1011)
+.+|++.|.|...
T Consensus 86 ~~eDtA~YYCAr~ 98 (120)
T d1dn0b1 86 TAADTAVYYCARP 98 (120)
T ss_dssp CGGGCEEEEEEEC
T ss_pred ccccccEEEEEee
Confidence 9999999999543
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.74 E-value=4.8e-05 Score=63.97 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc----ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH----RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~----~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
.....+++|++++|.|.+++. ...+.|+|.. +.+. .. -.-...+|+.+..+.......|.|.+++
T Consensus 7 Sg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~ 86 (118)
T d1lo4h1 7 TGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLR 86 (118)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred ECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccccc
Confidence 344578899999999999973 3478898753 2221 10 0112236999999888888899999999
Q ss_pred cCCCceEEEEEEe
Q psy17146 99 LDDDARYQCQVST 111 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~ 111 (1011)
.+|++.|.|....
T Consensus 87 ~eDtA~YyCAr~~ 99 (118)
T d1lo4h1 87 SEDTAIYYCARGT 99 (118)
T ss_dssp GGGCEEEEEEEEE
T ss_pred CCcceEEEecccC
Confidence 9999999998654
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.73 E-value=2.4e-05 Score=65.69 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=58.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.....+++|++++|.|.+.+. ...+.|+|.- +.+. ... .-...+|+.+..+.......|.|.++
T Consensus 6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l 85 (116)
T d1a2yb_ 6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL 85 (116)
T ss_dssp EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee
Confidence 3455678899999999999973 3468888753 3221 000 11223699999888888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 86 ~~eDTAvYYCAr~~ 99 (116)
T d1a2yb_ 86 HTDDTARYYCARER 99 (116)
T ss_dssp CGGGCEEEEEEEES
T ss_pred eeccceEEEEEEeC
Confidence 99999999998654
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.73 E-value=7.2e-05 Score=64.67 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=52.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--e---------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--V---------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~---------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|.........+.|+|.... . . ..+...|+|.+++.+
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 45567788899999999999998887888999986311 0 0 112357999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 84 Dsg~YyCa~~~ 94 (115)
T d1lp9e1 84 DSALYYCALFL 94 (115)
T ss_dssp GCEEEEEEEEE
T ss_pred cCccceEEEEc
Confidence 99999998875
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.72 E-value=4.6e-05 Score=64.18 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=58.4
Q ss_pred cCCceeEEecCcEEEEEEEcCCC---CeeEEeeC--Ceec------CCcc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKD--DFAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~--~~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|.+.+.. ..+.|+|. |+.+ .... .-...+|+.|..+.......|.|.+
T Consensus 6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s 85 (118)
T d2fbjh1 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (118)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence 34456788999999999999843 36888865 3222 1110 1123469999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDtAvYYCAr~~ 100 (118)
T d2fbjh1 86 VRSEDTALYYCARLH 100 (118)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCCCcceEEEeeEec
Confidence 999999999998655
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=3.6e-06 Score=72.54 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCCCCCCc--ccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c-
Q psy17146 760 KKPPPGNGI--EHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A- 811 (1011)
Q Consensus 760 ~~~~p~~~~--~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A- 811 (1011)
.|.+|.++. +..++.+++.|+| ++.|++++|++|.|+++...+ .|++.|.| |
T Consensus 10 ~P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~ 89 (108)
T d1wf5a1 10 LPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAV 89 (108)
T ss_dssp CCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEEEEE
Confidence 444676643 4467888999999 778899999999999997644 88899999 5
Q ss_pred --CCCCCCC
Q psy17146 812 --GHDSETG 818 (1011)
Q Consensus 812 --~G~g~~s 818 (1011)
.|.|++|
T Consensus 90 N~~G~s~~S 98 (108)
T d1wf5a1 90 NDVGKGQFS 98 (108)
T ss_dssp ESSCEEEEC
T ss_pred cCCcCCCCc
Confidence 8888887
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=5.9e-05 Score=65.13 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=50.4
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECC----e-Ee--c-c----------cCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG----E-EI--G-V----------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g----~-~l--~-~----------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.|.+.++.+|++|+|.|.+.+......+.|+|.. . .+ . . ....++.... ......|+|
T Consensus 6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~----~~~~~~L~I 81 (114)
T d1akjd_ 6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR----LGDTFVLTL 81 (114)
T ss_dssp ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE----ETTEEEEEE
T ss_pred CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC----CCCChhcEE
Confidence 4567778999999999998765433268999832 1 11 0 0 0123343332 233568999
Q ss_pred cCCCCCCCEEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSVS 711 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~ 711 (1011)
.+++.+|+|.|.|.+.
T Consensus 82 ~~l~~~Dsg~YyCa~~ 97 (114)
T d1akjd_ 82 SDFRRENEGYYFCSAL 97 (114)
T ss_dssp SSCCGGGCEEEEEEEE
T ss_pred ccCCCCCCEEEeEeEc
Confidence 9999999999999876
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.72 E-value=2.7e-05 Score=66.82 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=58.8
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC---CeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+++....+++|++++|.|++.+.. ..+.|+|. |+.+. ... .-...+|+.+..+...+...|.|.
T Consensus 5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~ 84 (125)
T d1rihh1 5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN 84 (125)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence 356667889999999999999742 36888865 32221 000 111236999998888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 85 sL~~eDtAvYYCAR~~ 100 (125)
T d1rihh1 85 SLTSEDSAVYYCARES 100 (125)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccCcccceEEEEeeeC
Confidence 9999999999998653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.71 E-value=4.9e-05 Score=64.52 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=51.0
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----e-------------------eecCCCcEEEeecCCCCCE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----K-------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----~-------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
...|..+.+.+|++++|.|.....-...+.|++.... . .......|+|.+++.+|+|
T Consensus 4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 83 (106)
T d1op3k1 4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA 83 (106)
T ss_dssp EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence 3567889999999999999998777778999986421 0 1122357999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|.+..
T Consensus 84 ~YyCa~~~ 91 (106)
T d1op3k1 84 TYHCQHYA 91 (106)
T ss_dssp EEEEEEEC
T ss_pred cEeeeeCC
Confidence 99998764
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.71 E-value=2.9e-05 Score=65.74 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=51.3
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec---c-------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG---V-------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~---~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.|+...+.+|++|+|.|........ .+.||+. |.... . ....++.... ......|.|.+++.
T Consensus 3 tQp~sl~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~ 77 (103)
T d8faba1 3 TQPPSVSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST----SGTTVTLTISGVQA 77 (103)
T ss_dssp BCCSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEETTCCG
T ss_pred CCCCeEEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECC----CCCccCceEcCcch
Confidence 44556778999999999987765555 6899983 22111 0 0122333222 23457999999999
Q ss_pred CCCEEEEEEEEcC
Q psy17146 701 DHFGVYNCSVSNP 713 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~ 713 (1011)
+|+|.|.|.+.+.
T Consensus 78 ~Dsa~YyCA~~~~ 90 (103)
T d8faba1 78 EDEADYYCQAWDN 90 (103)
T ss_dssp GGCEEEEEEEEET
T ss_pred hHCceEEeeecCC
Confidence 9999999987643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.71 E-value=3.8e-05 Score=64.03 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=49.3
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccC-CCCeEEecCCcCccc---eeEEEEcCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGI---KSTLIIRESRHDH 702 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~---~~~L~I~~~~~~d 702 (1011)
.+|.+..........|+..+|.|.+.|+ |..+.|+|++||+++..+. ..... .+ .++. .+.|.+.. ++
T Consensus 4 ~~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~--~~--~dgtf~~~s~l~v~~---~~ 76 (99)
T d1uvqa1 4 EVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFL--SK--SDHSFFKISYLTFLP---SA 76 (99)
T ss_dssp CCCEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCE--EC--TTSCEEEEEEEEECC---CT
T ss_pred cCCEEEEEcCCcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceE--EC--CCCCEEEEEEEEEcC---CC
Confidence 4565542222224567889999999998 6667999999999886321 11111 11 1222 34555554 44
Q ss_pred CEEEEEEEEcCC
Q psy17146 703 FGVYNCSVSNPY 714 (1011)
Q Consensus 703 ~G~Y~C~a~N~~ 714 (1011)
...|+|.+....
T Consensus 77 ~~~ytC~V~H~s 88 (99)
T d1uvqa1 77 DEIYDCKVEHWG 88 (99)
T ss_dssp TCCEEEEEECTT
T ss_pred CCEEEEEEEeCC
Confidence 457999998764
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.70 E-value=2.4e-05 Score=66.49 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=57.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC------Cccc----CCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG------PHRN----LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~------~~~~----~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+.....+++|++++|.|.+.+.. ..+.|+|.. +.+. .... -...+|+.+..+.......|.|.
T Consensus 6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~ 85 (120)
T d1ai1h1 6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLI 85 (120)
T ss_dssp EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEES
T ss_pred eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeeccee
Confidence 44556788999999999998732 257898753 3321 1000 01126999999888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 86 sL~~eDtAvYYCAr~~ 101 (120)
T d1ai1h1 86 SVTNEDTAMYYCSREN 101 (120)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred eeeccceeEEEEEecC
Confidence 9999999999997544
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.70 E-value=4.5e-05 Score=64.86 Aligned_cols=66 Identities=17% Similarity=0.386 Sum_probs=51.1
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-----------------------eecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------------------VVGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++|+|.|.........+.|++..... .......|+|.+++.+|+
T Consensus 4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 83 (107)
T d1tjgl1 4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF 83 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence 445678899999999999999987767799999863210 012235799999999999
Q ss_pred EEEEEEEEe
Q psy17146 604 GRYYCKASV 612 (1011)
Q Consensus 604 G~Y~C~a~n 612 (1011)
|.|.|.+.+
T Consensus 84 A~YyCa~~~ 92 (107)
T d1tjgl1 84 ATYYCQQLH 92 (107)
T ss_dssp SEEEEEECS
T ss_pred ceEEEEECc
Confidence 999996553
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.69 E-value=2.9e-05 Score=65.45 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=58.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...-.+++|++++|.|.+++. ...+.|.|. |+.+. .. . .-+..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~ 85 (120)
T d1ad9b1 6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS 85 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence 4456678999999999999974 336888875 22221 00 0 1122379999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAr~~ 100 (120)
T d1ad9b1 86 LRSEDTAFYFCAREK 100 (120)
T ss_dssp CCGGGCEEEEEEEEB
T ss_pred cCCCcceEEEEEEcC
Confidence 999999999997644
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.69 E-value=6.3e-05 Score=64.44 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=50.6
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeE---eccc-----CCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEE---IGVG-----SSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~---l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
+.|+...+.+|++|+|.|...+......+.||+. |+. |... ...+...... .......|.|.+++.+|
T Consensus 3 tQP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D 80 (110)
T d2esvd1 3 TQPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIIT--EDRKSSTLILPHATLRD 80 (110)
T ss_dssp BCCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEEC--TTCSEEEEEESSCCGGG
T ss_pred CcCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeec--ccCCeeeehhcccccCC
Confidence 3456677999999999999765443226899983 221 1110 1112222111 13456789999999999
Q ss_pred CEEEEEEEEcC
Q psy17146 703 FGVYNCSVSNP 713 (1011)
Q Consensus 703 ~G~Y~C~a~N~ 713 (1011)
+|.|.|.+...
T Consensus 81 sa~YyCa~~~~ 91 (110)
T d2esvd1 81 TAVYYCIVVRS 91 (110)
T ss_dssp CEEEEEEEEES
T ss_pred ceEEEEEEeCC
Confidence 99999987643
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.69 E-value=2.5e-05 Score=65.94 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=59.4
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC---CeeEEeeC--CeecCC---------c--c--cCCCCcceEEeecCCCceeEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKD--DFALGP---------H--R--NLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~--~~~l~~---------~--~--~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
++.....+++|++++|.|.+++.. ..+.|+|. |+.+.. . . .-...+|+.+..+.......|.
T Consensus 5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~ 84 (121)
T d1nfdf1 5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ 84 (121)
T ss_dssp EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence 345667899999999999999843 36789874 333210 0 0 0123469999998888888999
Q ss_pred EeecccCCCceEEEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~ 111 (1011)
|.+++.+|++.|.|....
T Consensus 85 ~~~L~~eDTAvYYCAr~~ 102 (121)
T d1nfdf1 85 MNRLRVDDTAIYYCTRAG 102 (121)
T ss_dssp EESCCGGGCEECEEEEEE
T ss_pred ecccCCCcceEEEEeccC
Confidence 999999999999997643
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.69 E-value=4.8e-05 Score=64.67 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=58.8
Q ss_pred cCCceeEEecCcEEEEEEEcCCC---CeeEEeeC--CeecC------Cc-c----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKD--DFALG------PH-R----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~--~~~l~------~~-~----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+++|++++|.|.+.+.. ..+.|+|. |+.+. .. . .-...+|+.+..+.......|.|.+
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~ 85 (124)
T d2b1hh1 6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS 85 (124)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence 45667889999999999999843 36788874 22221 00 0 1123479999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTA~YYCAR~~ 100 (124)
T d2b1hh1 86 LKPSDTALYYCARLG 100 (124)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cccccceEEEEeecC
Confidence 999999999996543
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.68 E-value=3.5e-05 Score=65.44 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc-----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
...-.+.+|++++|.|++.+. ...+.|+|.. +.+. ... .-...+|+.+..+.......|.|.++
T Consensus 7 sg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL 86 (121)
T d1ol0a_ 7 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL 86 (121)
T ss_dssp EECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec
Confidence 344577899999999999974 2368898753 3321 110 01223699999988888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 87 ~~eDtAvYYCAr~~ 100 (121)
T d1ol0a_ 87 RAEDTAVYYCAREP 100 (121)
T ss_dssp CGGGCEEEEEEECC
T ss_pred ccccceEEEEEEec
Confidence 99999999997643
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.67 E-value=5.6e-05 Score=64.22 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=50.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e---------------------eecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K---------------------VVGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~---------------------~~~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++++|.|.........+.|+|.... . ...+...|+|.+++.+|+
T Consensus 4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1mexl1 4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL 83 (107)
T ss_dssp EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence 45667788999999999999987666668999985311 0 012336799999999999
Q ss_pred EEEEEEEEe
Q psy17146 604 GRYYCKASV 612 (1011)
Q Consensus 604 G~Y~C~a~n 612 (1011)
+.|.|-+..
T Consensus 84 A~YyCa~~~ 92 (107)
T d1mexl1 84 AEYFCQQYN 92 (107)
T ss_dssp SEEEEEECS
T ss_pred eeEEEeECC
Confidence 999997653
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.67 E-value=4.2e-05 Score=63.88 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=57.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|.+.+. ...+.|+|.- +.+ .... .-...+|+.+..+.......|.|.+
T Consensus 6 eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~ 85 (114)
T d1indh1 6 ESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNS 85 (114)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeee
Confidence 3445678899999999999874 3368898753 222 1110 1122369999998888888999999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCA~~ 99 (114)
T d1indh1 86 LRSEDTALYFCASH 99 (114)
T ss_dssp CCGGGCEEEEEECG
T ss_pred eccCcccEEEECCC
Confidence 99999999999753
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.67 E-value=4.2e-05 Score=63.91 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=59.0
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cc---c--cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....+++|+++.|.|.+.+. ...+.|+|. |+.+. .. . .-...+|+.+..+.......|.|.
T Consensus 5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~ 84 (116)
T d1mjuh1 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (116)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence 35667789999999999999973 336788874 32221 00 0 111236999998888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 85 sL~~eDtAvYYCAr~~ 100 (116)
T d1mjuh1 85 SLTSDDSAVYYCANKL 100 (116)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred ccCCCCceEEEEcccC
Confidence 9999999999997543
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.67 E-value=6.1e-05 Score=64.02 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=50.6
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-----------------------eecCCCcEEEeecCCCCCE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
...|..+.+.+|++++|.|.........+.|++..... .......|+|.+++.+|+|
T Consensus 5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1d5il1 5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG 84 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence 45577888999999999999877777789999763110 1123368999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|.+..
T Consensus 85 ~YyCa~~~ 92 (107)
T d1d5il1 85 IYYCLQYD 92 (107)
T ss_dssp EEEEEECS
T ss_pred EEEeeecc
Confidence 99997654
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.67 E-value=3.5e-05 Score=66.36 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCCc-----------c-----cCCCCcceEEeecCCCceeEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGPH-----------R-----NLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~~-----------~-----~~~~~~r~~i~~~~~~~~~~L 92 (1011)
...-.+.+|++|+|.|++++. ...+.|+|.. +.+..- . .-...+|+.+..+.......|
T Consensus 7 sG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L 86 (127)
T d1i3ua_ 7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL 86 (127)
T ss_dssp ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred ECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE
Confidence 345567899999999999974 3368899753 221100 0 011235999988877788899
Q ss_pred EEeecccCCCceEEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+|.+++.+|++.|.|....
T Consensus 87 ~i~~l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 87 QMNSLKPEDTAVYYCAAKT 105 (127)
T ss_dssp EECSCCGGGCEEEEEEEES
T ss_pred eeecccccceeEEEEEEEe
Confidence 9999999999999998654
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.67 E-value=8.7e-05 Score=62.96 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=50.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeE---ec-------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEE---IG-------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~---l~-------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|........ .+.||+. |+. +. .+...++.... .+....|+|.+++.+|
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~l~~~D 82 (108)
T d1jhll_ 8 PSYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG----SGTDFTLTISSLEPED 82 (108)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----SSSEEEEEECSCCTTC
T ss_pred CCeEEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccC----CCCEEEeEeeeeEecc
Confidence 455678899999999998766555 6999983 111 11 01122233222 2345789999999999
Q ss_pred CEEEEEEEEcC
Q psy17146 703 FGVYNCSVSNP 713 (1011)
Q Consensus 703 ~G~Y~C~a~N~ 713 (1011)
+|.|.|.+.+.
T Consensus 83 sa~YyCA~~~~ 93 (108)
T d1jhll_ 83 FAMYICQQHNE 93 (108)
T ss_dssp CSEEEEEECSS
T ss_pred ceEEEEeeCCC
Confidence 99999977654
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.67 E-value=3.8e-05 Score=65.42 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=58.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--Ceec------CCc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFAL------GPH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l------~~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+++|+++.|.|.+.+. ...+.|+|. |+.+ ... . .-...+|+.+..+.......|.|.+
T Consensus 5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~ 84 (126)
T d1lmka1 5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS 84 (126)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence 4566788999999999999973 336888874 3222 100 0 1112379999988888889999999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 85 L~~eDTAvYYCAr~ 98 (126)
T d1lmka1 85 LTSEDSAVYYCARG 98 (126)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEEeec
Confidence 99999999999753
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.66 E-value=4.9e-05 Score=65.10 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc-----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....+++|+++.|.|.+++. ...+.|+|.- +.+. ... .-...+|+.+..+.......|.|.
T Consensus 4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~ 83 (130)
T d1rhhb1 4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT 83 (130)
T ss_dssp EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence 45666788999999999999973 3368898753 2221 000 011236999999888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 84 ~L~~eDtAvYyCAr~~ 99 (130)
T d1rhhb1 84 NLRSDDTAVYYCARDF 99 (130)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccCCCCcEEEEEEeec
Confidence 9999999999998654
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.66 E-value=7.9e-05 Score=63.31 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc-----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.....+++|++++|.|.+.+. ...+.|+|.- +.+. ... .-+..+|+.+..+.......|.|.++
T Consensus 7 sG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL 86 (122)
T d1bz7b1 7 SGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL 86 (122)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence 344567899999999999974 3368898752 2221 100 11123699999887778889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 87 ~~eDTAvYYCAr~~ 100 (122)
T d1bz7b1 87 RSEDTAIYYCTRGG 100 (122)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred cccCceEEEeecCC
Confidence 99999999997654
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.66 E-value=6.2e-05 Score=63.60 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Cc---c--cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.....+++|++++|.|.+++. ...+.|+|.. +.+. .. . .-...+|+.+..+.......|.|.++
T Consensus 7 SG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L 86 (121)
T d2p49b1 7 SGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL 86 (121)
T ss_dssp EECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec
Confidence 345678899999999999873 3468898753 2221 00 0 01123599999888888889999999
Q ss_pred ccCCCceEEEEEE
Q psy17146 98 MLDDDARYQCQVS 110 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~ 110 (1011)
+.+|++.|.|...
T Consensus 87 ~~eDtAvYYCAr~ 99 (121)
T d2p49b1 87 KPEDTATYYCAAG 99 (121)
T ss_dssp CGGGCEEEEEEES
T ss_pred cccceeEEeeecc
Confidence 9999999999864
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.66 E-value=5.7e-05 Score=64.39 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=55.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---C--CeeEEeeC--CeecC------Ccc----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---T--GVLQWTKD--DFALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~--~~v~W~k~--~~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+.....+++|++|+|.|.+.+. . ..+.|+|. ++.+. ... .-...+|+.+..+.....+.|+|.
T Consensus 6 esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~ 85 (123)
T d1r0ah1 6 ESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMM 85 (123)
T ss_dssp EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEEC
T ss_pred eECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEccee
Confidence 3445578899999999998863 1 25689864 32221 000 111236899988776777899999
Q ss_pred ecccCCCceEEEEEE
Q psy17146 96 PVMLDDDARYQCQVS 110 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~ 110 (1011)
+++.+|++.|.|...
T Consensus 86 sl~~eDsAvYyCAr~ 100 (123)
T d1r0ah1 86 TVETADTAIYYCAQS 100 (123)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ecccccceEEeeccc
Confidence 999999999999854
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=3e-05 Score=66.10 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=51.6
Q ss_pred eeeecCCcEEEEEEEEecCC---CCeEEEEECCeEecccCC----------CCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 638 QFGIPGDTARVECSAFSIPP---PEKVTWSYRGEEIGVGSS----------DDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~---p~~v~W~~~g~~l~~~~~----------~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.++..|++++|.|....... ...+.|.+++..+..... .+..... ....+|.|.+++.+|+|
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-----~g~~sL~I~~v~~~D~G 78 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-----TNNLSIVILALRPSDEG 78 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-----TTTTEEEECSCCGGGCE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-----CCcEEEEECcCChHHCe
Confidence 45788999999998754332 236889888766532111 2222221 12468999999999999
Q ss_pred EEEEEEEcCCCCeE
Q psy17146 705 VYNCSVSNPYGSDS 718 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~ 718 (1011)
.|.|.+.+.-+...
T Consensus 79 ~Y~C~V~~~~~~~~ 92 (105)
T d1dr9a1 79 TYECVVLKYEKDAF 92 (105)
T ss_dssp EEEEEEEECCTTSC
T ss_pred EEEEEEEeCCCCCe
Confidence 99999987655443
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=4.6e-05 Score=64.25 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=49.6
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
.++.++|.|.+.|+ |..+.|+|++||+++..+.................+.|.|..-.......|+|.|.......+.
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k 97 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK 97 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence 45678999999988 6667999999999876321111111111001123567888766656667999999987544433
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.64 E-value=4.5e-05 Score=64.54 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=58.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|+++.|.|.+.+. ...+.|.|. |+.+. ... .-...+|+.+..+.......|.|.+
T Consensus 6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s 85 (124)
T d1yedb1 6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS 85 (124)
T ss_dssp ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence 4556678899999999999974 336888874 32221 000 0112369999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTAvYYCAR~~ 100 (124)
T d1yedb1 86 LKSEDSAVYFCTRWG 100 (124)
T ss_dssp CCGGGCEEEEEEECC
T ss_pred cCCCcceEEEecccC
Confidence 999999999997543
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.64 E-value=3.7e-05 Score=65.49 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=58.2
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--Ceec------CCcc-----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++....++.|++|+|.|.+.+. ...+.|+|. |+.+ .... .-+..+|+.+..+.......|.|.
T Consensus 5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~ 84 (127)
T d1n0xh1 5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR 84 (127)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence 35667789999999999999984 336888875 3222 1111 111236999998877788899999
Q ss_pred ecccCCCceEEEEE
Q psy17146 96 PVMLDDDARYQCQV 109 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~ 109 (1011)
+++.+|++.|.|.-
T Consensus 85 ~L~~eDtAvYYCAR 98 (127)
T d1n0xh1 85 SLRSADTAVYYCAR 98 (127)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCCceEEEEEe
Confidence 99999999999974
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.64 E-value=3.6e-05 Score=65.53 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=57.3
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Cccc-----CCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHRN-----LSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~~-----~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++|+|.|++.+. ...+.|+|. |+.+. .... -...+|+.+..+.......|.|.+
T Consensus 6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~ 85 (121)
T d1j05b_ 6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS 85 (121)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence 4556678999999999999874 336889875 33221 0000 112358999887777778899999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDtAvYYCAr~~ 100 (121)
T d1j05b_ 86 LTSEDTAVYYCAPFG 100 (121)
T ss_dssp CCGGGCEEEEEEEEB
T ss_pred cCcCcceEEEeEeec
Confidence 999999999998643
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=1.7e-05 Score=67.18 Aligned_cols=64 Identities=6% Similarity=-0.072 Sum_probs=51.3
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c---C
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A---G 812 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A---~ 812 (1011)
.|.++....++.+++.|+| ++.+.+++|.+|.|+++.... .|. +|.| | .
T Consensus 7 ~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~A~n~~ 85 (102)
T d2dtge1 7 IVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLA 85 (102)
T ss_dssp CCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETT
T ss_pred CCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEEEEcCC
Confidence 8889999999999999999 777778899999999986543 554 5999 4 8
Q ss_pred CCCCCC-ccccccccc
Q psy17146 813 HDSETG-SESVHTRIG 827 (1011)
Q Consensus 813 G~g~~s-s~~~~t~~~ 827 (1011)
|.|++| ...+.|.+.
T Consensus 86 G~g~~S~~v~f~~~e~ 101 (102)
T d2dtge1 86 GNGSWTEPTYFYVTDY 101 (102)
T ss_dssp BCCCCCCCCEECCCCC
T ss_pred ccCCCCCCEEEEccCC
Confidence 899888 445555543
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=7.9e-06 Score=68.57 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=52.7
Q ss_pred CCCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G 813 (1011)
.+|.++++..++.+++.|+| |..+++.+|.+|.++++.... .|+++|.| | .|
T Consensus 2 ~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~G 81 (96)
T d1x5xa1 2 SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEG 81 (96)
T ss_dssp CCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSSC
T ss_pred ccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCCc
Confidence 47889999999999999999 566778899999999987544 89999999 4 88
Q ss_pred CCCCC-cccccccc
Q psy17146 814 DSETG-SESVHTRI 826 (1011)
Q Consensus 814 ~g~~s-s~~~~t~~ 826 (1011)
.|++| ...++|++
T Consensus 82 ~s~~S~~~~~~T~p 95 (96)
T d1x5xa1 82 KSNPSEVVEFTTCP 95 (96)
T ss_dssp EEEECCCEEEECCC
T ss_pred EeCCCCCEEEEeCc
Confidence 88888 34455543
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.62 E-value=8.2e-05 Score=63.51 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=58.6
Q ss_pred cCCceeEEecCcEEEEEEEcCCC---CeeEEeeCC--eecC------Cc---c--cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDD--FALG------PH---R--NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~~--~~l~------~~---~--~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|++.+.. ..+.|+|.- +.+. .. . .-...+|+.|..+.......|.|.+
T Consensus 6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s 85 (128)
T d2nxyd1 6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN 85 (128)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence 44556789999999999999843 267887653 2221 00 0 1123479999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTA~YYCAr~~ 100 (128)
T d2nxyd1 86 LRSDDTAVYFCAGVY 100 (128)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred ccccCceEEEEeEEe
Confidence 999999999998754
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.62 E-value=3.8e-05 Score=65.80 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=58.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++....+++|++++|.|.+++. ...+.|+|. ++.+. ... .-+..+|+.|..+.......|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s 85 (130)
T d1rzga1 6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS 85 (130)
T ss_dssp ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence 4566678999999999999874 336888875 33221 000 0112369999998888888999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDtA~YYCAr~~ 100 (130)
T d1rzga1 86 LRSEDTAVFYCASPY 100 (130)
T ss_dssp CCGGGCEEEEEEECC
T ss_pred cCCCccEEEEEEEec
Confidence 999999999998643
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=9.2e-05 Score=63.00 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=52.3
Q ss_pred eecCCceeeecCCcEEEEEEEEecCC--CCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIPP--PEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
++.++...+.+|++++|.|...+... ...+.||+. |+.... +...++.... .+....|.|.+
T Consensus 4 ~tQ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~----~~~~~~L~I~~ 79 (110)
T d1oaql_ 4 VTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL----IGNKAALTITG 79 (110)
T ss_dssp EEECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEEES
T ss_pred EeeCCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc----cccceeeecCC
Confidence 44455667899999999999875432 213889972 222111 1234555443 23467999999
Q ss_pred CCCCCCEEEEEEEEc
Q psy17146 698 SRHDHFGVYNCSVSN 712 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N 712 (1011)
++.+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (110)
T d1oaql_ 80 AQTEDEAIYFCALWY 94 (110)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCccccEeEEEEccc
Confidence 999999999998764
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.60 E-value=0.00011 Score=63.39 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=51.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--e----------------------ecCCCcEEEeecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--V----------------------VGNSPNLTLLMTSD 600 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~----------------------~~~~~~L~I~~v~~ 600 (1011)
+...|..+.+.+|++++|.|.........+.|++.... . . ......|+|.+++.
T Consensus 3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1j8hd1 3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM 82 (115)
T ss_dssp EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence 45667789999999999999998777778999985311 0 0 01124799999999
Q ss_pred CCCEEEEEEEEe
Q psy17146 601 DLAGRYYCKASV 612 (1011)
Q Consensus 601 ~d~G~Y~C~a~n 612 (1011)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCa~~~ 94 (115)
T d1j8hd1 83 SDAAEYFCAVSE 94 (115)
T ss_dssp GGCEEEEEEEES
T ss_pred cCCccceeeecC
Confidence 999999999975
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=1.1e-05 Score=70.93 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=52.4
Q ss_pred CCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c---
Q psy17146 763 PPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A--- 811 (1011)
+|.++.+..++.+++.|+| |..+++.+|.+|+|+|+.... .|+++|.| |
T Consensus 18 ~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 97 (120)
T d1wfua_ 18 KPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSP 97 (120)
T ss_dssp CCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECS
T ss_pred cCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEEEEEeC
Confidence 7888999999999999999 556677899999999874211 89999999 5
Q ss_pred CCCCCCC-cccccccccc
Q psy17146 812 GHDSETG-SESVHTRIGV 828 (1011)
Q Consensus 812 ~G~g~~s-s~~~~t~~~~ 828 (1011)
.|.|++| ...+.|....
T Consensus 98 ~G~s~~S~~~~~~T~~~~ 115 (120)
T d1wfua_ 98 SGEYEYSPVVSVATTRES 115 (120)
T ss_dssp SSCEEECCCEEEECCCCC
T ss_pred CcEeCCCCCEEEEeCCCC
Confidence 8888888 4556665543
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.60 E-value=6.2e-05 Score=64.18 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=58.3
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecC------Ccc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
++..-.++.|++++|.|.+.+. ...+.|+|. |+.+. ... .-...+|+.+..+.......|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~s 85 (127)
T d2fx7h1 6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecc
Confidence 4455678899999999999973 336888864 32221 100 1112369999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTavYYCAR~~ 100 (127)
T d2fx7h1 86 LRPEDTAVYYCAREG 100 (127)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCcccceEEEEeecc
Confidence 999999999998654
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.59 E-value=0.0002 Score=62.10 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc---------------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV---------------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~---------------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
|....+.+|++|+|.|...+.... .+.|||. |+.+.. ....++.+... ......|+|.+
T Consensus 8 P~~~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~L~i~~ 83 (118)
T d2ij0c1 8 PSMVIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHA---SPTLSTLTVTS 83 (118)
T ss_dssp CSEEEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEEC---SSSEEEEEECS
T ss_pred CCeEEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeecc---ccccccccccc
Confidence 455678999999999998776666 7999983 221110 01334444332 33456899999
Q ss_pred CCCCCCEEEEEEEEcCCC
Q psy17146 698 SRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~~G 715 (1011)
++.+|+|.|.|.+.-..|
T Consensus 84 ~~~~Dsa~YyCa~~~~~~ 101 (118)
T d2ij0c1 84 AHPEDSGFYVCSALAGSG 101 (118)
T ss_dssp CCGGGCEEEEEEEECSSC
T ss_pred cccccCceEEEEEecCCC
Confidence 999999999999864433
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.59 E-value=6.4e-05 Score=64.74 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCceeEEecCcEEEEEEEcCC---CC--eeEEeeC--CeecC------Ccc----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TG--VLQWTKD--DFALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~--~v~W~k~--~~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+....+++|++|+|.|.+.+. .. .+.|+|. ++.+. ... .-...+|+.+..+.......|+|.+
T Consensus 7 sG~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~ 86 (126)
T d1etzb1 7 SGPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITS 86 (126)
T ss_dssp ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ECCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceec
Confidence 344578889999999998862 22 4679864 32221 000 1112369999988877888999999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 87 l~~eDtAvYyCAr~ 100 (126)
T d1etzb1 87 VDTSDTATYHCARR 100 (126)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred ccccccceEEEEEe
Confidence 99999999999854
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.58 E-value=2.7e-05 Score=65.31 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=57.2
Q ss_pred cCCceeEEecCcEEEEEEEcC---CCCeeEEeeC--CeecCCcccC-----------CCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID---KTGVLQWTKD--DFALGPHRNL-----------SGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~--~~~l~~~~~~-----------~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...-.+++|++++|.|.+++ ....+.|+|. |+.+..-..+ ...+|+.|..+.......|.|.+
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~s 85 (117)
T d1b2wh1 6 QSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNS 85 (117)
T ss_dssp ECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecc
Confidence 345567899999999999986 3447889875 3222111001 01269999998888889999999
Q ss_pred cccCCCceEEEEEE
Q psy17146 97 VMLDDDARYQCQVS 110 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~ 110 (1011)
++.+|++.|.|...
T Consensus 86 L~~eDTAvYYCAr~ 99 (117)
T d1b2wh1 86 LRPEDTAVYYCARG 99 (117)
T ss_dssp CCGGGCEEEECCEE
T ss_pred ccCCcceEEEEccc
Confidence 99999999999754
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.58 E-value=6.2e-05 Score=64.08 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=57.3
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.....+++|++++|.|++.+. ...+.|+|.. +.+ .... .-+..+|+.+..+.......|.|.++
T Consensus 7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L 86 (126)
T d1dfbh1 7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL 86 (126)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence 345578899999999999974 3368888753 222 1111 01123699999988888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 87 ~~eDtavYYCAr~~ 100 (126)
T d1dfbh1 87 RAEDMALYYCVKGR 100 (126)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccCcceEEEEEecc
Confidence 99999999997643
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.58 E-value=0.0001 Score=61.13 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..|+.++|.|.+.|+ |..+.|+|++||+++..+....-...+ .++..+......+...+...|+|.+....-.
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~---~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~ 87 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRN---GDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ 87 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC---SSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecC---CCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence 456778999999988 556799999999887632110000111 1333333333344556667899999877443
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.58 E-value=7e-05 Score=63.89 Aligned_cols=66 Identities=17% Similarity=0.345 Sum_probs=49.6
Q ss_pred eecCCceEEEcCCCcEEEEEEEecC-CCCeEEEEecCCce-----------------------eecCCCcEEEeecCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDK-----------------------VVGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~-p~p~v~W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d 602 (1011)
+...|..+.+.+|++++|.|..... ....+.|++..... ...+...|+|.+++.+|
T Consensus 4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED 83 (108)
T ss_dssp EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence 3466888999999999999998654 34578999864210 01223579999999999
Q ss_pred CEEEEEEEEe
Q psy17146 603 AGRYYCKASV 612 (1011)
Q Consensus 603 ~G~Y~C~a~n 612 (1011)
+|.|.|.+.+
T Consensus 84 sa~YyCa~~~ 93 (108)
T d2fx7l1 84 FAVYYCQQYG 93 (108)
T ss_dssp CSEEEEEECS
T ss_pred cEEEeeecCC
Confidence 9999998753
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=9.5e-06 Score=68.80 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc------------------------cccccccc---c--
Q psy17146 763 PPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS------------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~------------------------~p~~~Y~f---A-- 811 (1011)
+|.... .+...+++.++| |..+||.+|++|+|+++...+ .|++.|.| |
T Consensus 5 ~P~~~~-~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N 83 (101)
T d2haza1 5 SPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 83 (101)
T ss_dssp CCEEEE-EEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCccCE-EEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEEe
Confidence 554433 356677899999 556778899999999997543 78899999 5
Q ss_pred -CCCCCCC-ccccccc
Q psy17146 812 -GHDSETG-SESVHTR 825 (1011)
Q Consensus 812 -~G~g~~s-s~~~~t~ 825 (1011)
.|.|++| ...++|+
T Consensus 84 ~~G~g~~S~~~~~~T~ 99 (101)
T d2haza1 84 GKGLGEISAASEFKTQ 99 (101)
T ss_dssp TTEECCCCCCEEEECC
T ss_pred CCcCcCCCCceeEEeC
Confidence 8999998 3334443
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.57 E-value=9.3e-05 Score=61.10 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=45.8
Q ss_pred ecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 41 VGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
+|++|+|.|.+++. ...+.|+|.. +.+ .... .-...+|+.+..+.......|+|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 58999999999973 3368998753 322 1110 122347999998887788899999999999999
Q ss_pred EEEEEEe
Q psy17146 105 YQCQVST 111 (1011)
Q Consensus 105 Y~C~~~~ 111 (1011)
|.|....
T Consensus 81 YYCAr~~ 87 (103)
T d1oari_ 81 YYCARMW 87 (103)
T ss_dssp EEEEEEE
T ss_pred EEeEEEC
Confidence 9998654
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=4.7e-06 Score=72.83 Aligned_cols=75 Identities=19% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCCCCCCCccc--ccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---
Q psy17146 760 KKPPPGNGIEH--HVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY--- 810 (1011)
Q Consensus 760 ~~~~p~~~~~~--~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f--- 810 (1011)
|+.||.++.+. ..+..++.++| ++.+.++++.+|.|+++...+ .|++.|.|
T Consensus 4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~ 83 (115)
T d1bqua2 4 KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR 83 (115)
T ss_dssp ECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEE
T ss_pred ECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEE
Confidence 56688877665 45677899999 777888899999999997544 78889999
Q ss_pred c---CCCCCCC----cccccccccccccccc
Q psy17146 811 A---GHDSETG----SESVHTRIGVPLAGPV 834 (1011)
Q Consensus 811 A---~G~g~~s----s~~~~t~~~~P~~~P~ 834 (1011)
| .|.|..| ...+.|.+++|..+|.
T Consensus 84 a~~~~G~g~~S~~S~~~~~~T~~~~P~~~P~ 114 (115)
T d1bqua2 84 CMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114 (115)
T ss_dssp EEETTSCSCCCCCCCCEEEEECCCHHHHHHH
T ss_pred EEeCCCccCCcCCcCCEEEECCCCCCCCCcC
Confidence 4 7887665 4468899999998874
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00023 Score=58.68 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=49.9
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+||.+.... ....|+.++|.|.+.|+ |..+.|+|++||..+... ....... ..++.........+...+...|
T Consensus 2 ~PP~V~v~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~--~~~~~~~--~~~~t~~~~s~l~~~~~~~~~y 75 (94)
T d1t7va1 2 DPPSVVVTS--HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPE--LRGDVLH--NGNGTYQSWVVVAVPPQDTAPY 75 (94)
T ss_dssp BCCEEEEEE--EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCS--EEEEEEE--TTTTEEEEEEEEEECTTCCSCE
T ss_pred cCCEeEEec--cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCc--EEeeeec--CCCCeEEEEEEeEeCCCCCCEE
Confidence 466655311 12357899999999996 666799999999987531 1111111 1233333333344445555689
Q ss_pred EEEEEcCCC
Q psy17146 707 NCSVSNPYG 715 (1011)
Q Consensus 707 ~C~a~N~~G 715 (1011)
+|.+....-
T Consensus 76 tC~V~H~sl 84 (94)
T d1t7va1 76 SCHVQHSSL 84 (94)
T ss_dssp EEEEEETTC
T ss_pred EEEEEECCC
Confidence 999987643
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.56 E-value=0.00011 Score=62.52 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=57.4
Q ss_pred CceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCcc-----cCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHR-----NLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
..-.+++|++++|.|++.+. ...+.|+|.- +.+ .... .-...+|+.|..+.......|.|.+++
T Consensus 8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~ 87 (125)
T d1op3h1 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR 87 (125)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence 44578999999999999874 3368898753 222 1110 112236999999888888999999999
Q ss_pred cCCCceEEEEEEe
Q psy17146 99 LDDDARYQCQVST 111 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~ 111 (1011)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (125)
T d1op3h1 88 VEDTAIYYCARKG 100 (125)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CccceeEeEeecc
Confidence 9999999998654
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.56 E-value=0.00018 Score=62.13 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=51.4
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEEC-----CeEecc----c-----------CCCCeEEecCCcCccceeEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR-----GEEIGV----G-----------SSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-----g~~l~~----~-----------~~~~~~~~~~~~~~~~~~~L 693 (1011)
.|....+.+|++|+|+|.+.+......+.|++. ++.+.. . ...++....+ .......|
T Consensus 4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L 81 (115)
T d2atpb1 4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILES--SDSRRPFL 81 (115)
T ss_dssp ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEES--TTSSSCEE
T ss_pred eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEe--CCCCeEEE
Confidence 456677999999999999887544337999974 232210 0 1223333322 13345689
Q ss_pred EEcCCCCCCCEEEEEEEE
Q psy17146 694 IIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~ 711 (1011)
+|.+++.+|+|.|.|.+.
T Consensus 82 ~I~~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 82 SIMNVKPEDSDFYFCATV 99 (115)
T ss_dssp EECSCCGGGCEEEEEEEE
T ss_pred eecccCCCCCcEEEEeEc
Confidence 999999999999999875
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.56 E-value=6.9e-05 Score=64.11 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=58.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eec------CCccc-----CCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FAL------GPHRN-----LSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l------~~~~~-----~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|++++|.|.+++. ...+.|+|.- +.+ ..... -...+|+.+..+.......|.|.+
T Consensus 6 esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~ 85 (127)
T d2fb4h1 6 QSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDS 85 (127)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeee
Confidence 3345578899999999999974 3368888753 222 11110 112369999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 86 L~~eDTA~YYCAr~~ 100 (127)
T d2fb4h1 86 LRPEDTGVYFCARDG 100 (127)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred eeecceeEEEEEEec
Confidence 999999999998654
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.56 E-value=6.4e-05 Score=63.88 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=50.6
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEe----------cccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEI----------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l----------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|........ .+.||+. |+.. ......++.... .+....|.|.+++.+|
T Consensus 8 P~s~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~~~D 82 (107)
T d3cx5k1 8 PVSLAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG----SGTDYSLTISNLEPED 82 (107)
T ss_dssp STTCCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE----ETTEEEEECSCCCSCC
T ss_pred CCEEEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc----cCCEEEEEEeEeeecC
Confidence 456678999999999997766555 6999973 2211 111223443322 2346799999999999
Q ss_pred CEEEEEEEEc
Q psy17146 703 FGVYNCSVSN 712 (1011)
Q Consensus 703 ~G~Y~C~a~N 712 (1011)
+|.|.|.+.+
T Consensus 83 sa~YyCa~~~ 92 (107)
T d3cx5k1 83 IATYFCQHHI 92 (107)
T ss_dssp CSEEEEEECS
T ss_pred CCcEEeeeCC
Confidence 9999997643
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.56 E-value=0.00013 Score=61.98 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--Ce---Eec-------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GE---EIG-------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~---~l~-------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|........ .+.||+. |+ .|. .....++.... .+....|.|.+++.+|
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~~~D 82 (109)
T d1mqkl_ 8 PVSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG----SGTQFSLKINSLLPED 82 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEec----cCCEEEEEEccccccC
Confidence 456678899999999998765555 6999983 22 111 11234444432 3446789999999999
Q ss_pred CEEEEEEEE
Q psy17146 703 FGVYNCSVS 711 (1011)
Q Consensus 703 ~G~Y~C~a~ 711 (1011)
+|.|.|.+.
T Consensus 83 Sa~YyCA~~ 91 (109)
T d1mqkl_ 83 FGSYYCQHH 91 (109)
T ss_dssp CEEEEEEEC
T ss_pred CeeEEEeee
Confidence 999999875
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00012 Score=59.97 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=56.9
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEEEEEcC--Cc
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMG--FP 462 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~--~~ 462 (1011)
+|.+...|.. .|..|++|+|.|... .+...+.|+|++.... ......+.|.+++.+|+|+|+|...... -.
T Consensus 4 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS 81 (93)
T d1olla2 4 TPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWS 81 (93)
T ss_dssp CCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEEC
T ss_pred CCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCCcC
Confidence 5667777754 588899999999975 4567899999886432 1234569999999999999999754321 12
Q ss_pred ceeeEEEEEE
Q psy17146 463 EVGAEATVYL 472 (1011)
Q Consensus 463 ~~s~~~~v~v 472 (1011)
..+..+.|.|
T Consensus 82 ~~SdpLeL~V 91 (93)
T d1olla2 82 FPSEPVKLLV 91 (93)
T ss_dssp CCCCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 3344455544
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.55 E-value=7.4e-05 Score=64.64 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=51.2
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cc--ee----------------------ecCCCcEEEeecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SD--KV----------------------VGNSPNLTLLMTSD 600 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~--~~----------------------~~~~~~L~I~~v~~ 600 (1011)
+...|..+.+.+|++++|.|.........+.|++.. .. .. ..+...|+|.+++.
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 455677889999999999999987777788999742 11 00 11236899999999
Q ss_pred CCCEEEEEEEEe
Q psy17146 601 DLAGRYYCKASV 612 (1011)
Q Consensus 601 ~d~G~Y~C~a~n 612 (1011)
+|+|.|.|.+..
T Consensus 83 ~Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 83 SDSAVYFCAVSG 94 (115)
T ss_dssp GGCEEEEEEEEE
T ss_pred cccceecccccC
Confidence 999999998764
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00012 Score=60.47 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----cCCCcEEEeecCCCCCEEEEEEEEecC----
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----GNSPNLTLLMTSDDLAGRYYCKASVMG---- 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~~---- 614 (1011)
+|.+...|.. .+..|++|+|.|.......-.+.|+|+|..... .....+.|.+++.+|+|.|+|......
T Consensus 5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~ 83 (96)
T d1ucta2 5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYL 83 (96)
T ss_dssp CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTE
T ss_pred CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCCCCC
Confidence 5677777754 699999999999864344457899999854321 234679999999999999999987421
Q ss_pred CCceeeEEEEEE
Q psy17146 615 FPEVGAEATVYL 626 (1011)
Q Consensus 615 ~~~~s~~~~l~V 626 (1011)
....|..+.|.|
T Consensus 84 ~S~~Sd~leL~V 95 (96)
T d1ucta2 84 WSFPSNALELVV 95 (96)
T ss_dssp ECCCCCCEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 234456666655
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.54 E-value=0.00019 Score=61.37 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=47.8
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCce-----------------------eecCCCcEEEeecCCCCCEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSDK-----------------------VVGNSPNLTLLMTSDDLAGR 605 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d~G~ 605 (1011)
|..+.+.+|++++|.|.+.+.. ...+.|++..... ...+...|.|.+++.+|++.
T Consensus 7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~ 86 (114)
T d2rhea_ 7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD 86 (114)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence 3368899999999999987664 4679999864210 11234689999999999999
Q ss_pred EEEEEEe
Q psy17146 606 YYCKASV 612 (1011)
Q Consensus 606 Y~C~a~n 612 (1011)
|.|.+..
T Consensus 87 YyCA~~~ 93 (114)
T d2rhea_ 87 YYCAAWN 93 (114)
T ss_dssp EEEEEEE
T ss_pred EEEeecC
Confidence 9998864
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=0.00022 Score=54.24 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=52.0
Q ss_pred CCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
-..-++..|+.+.|.|-+.- ..|.+.|.|-....=...+...+...+-...+....+.|.+..+-.+|.|.|+|.+.-
T Consensus 10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf 89 (104)
T d1xaua_ 10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 89 (104)
T ss_dssp TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence 34568889999999999986 5678999875421100001111111122233344556899999999999999999975
Q ss_pred C
Q psy17146 112 G 112 (1011)
Q Consensus 112 ~ 112 (1011)
.
T Consensus 90 ~ 90 (104)
T d1xaua_ 90 N 90 (104)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.54 E-value=0.00011 Score=63.02 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=51.9
Q ss_pred eecCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE---ecc-------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE---IGV-------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~---l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
++.++...+.+|++++|.|...+.... ..+.|++. |+. |.. ....++.... .+....|+|.++
T Consensus 4 ltQp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~ 79 (111)
T d1rzfl1 4 LTQPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK----SGTSATLGITGL 79 (111)
T ss_dssp BBCCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE----ETTEEEEEESSC
T ss_pred eeeCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC----CCCEeeeEEeee
Confidence 344556789999999999988654321 15999973 111 111 1223444432 234578999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy17146 699 RHDHFGVYNCSVSNP 713 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~ 713 (1011)
+.+|+|.|.|.+...
T Consensus 80 ~~~Dsa~YyCA~~~~ 94 (111)
T d1rzfl1 80 QTGDEADYYCGTWDS 94 (111)
T ss_dssp CGGGCSEEEEEEEET
T ss_pred ccccCcceEEeecCC
Confidence 999999999987643
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.54 E-value=0.00016 Score=59.04 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=48.6
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHF 703 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~ 703 (1011)
+||.+..... ...+..++|.|.+.|+ |..+.|+|++||..+... ......+ .++ ..+.|.|.. ++.
T Consensus 2 ~PP~V~v~~~--~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~---~~~~~~~--~dgty~~~S~l~v~~---~~~ 71 (91)
T d3frua1 2 EPPSMRLKAR--PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG---NCSTGPN--GDGSFHAWSLLEVKR---GDE 71 (91)
T ss_dssp BCCEEEEEEE--ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC---EEEEEEC--SSSCEEEEEEEEEET---TCG
T ss_pred CCCEEEEEec--CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc---Cccceec--CCCCEeEEEEEEECC---CCC
Confidence 4666552111 1234678999999997 777899999999887532 2222221 123 245566643 444
Q ss_pred EEEEEEEEcCCC
Q psy17146 704 GVYNCSVSNPYG 715 (1011)
Q Consensus 704 G~Y~C~a~N~~G 715 (1011)
..|+|.+....-
T Consensus 72 ~~ytC~V~H~sL 83 (91)
T d3frua1 72 HHYQCQVEHEGL 83 (91)
T ss_dssp GGEEEEEECTTS
T ss_pred CEEEEEEEeCCC
Confidence 579999987643
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.54 E-value=7.5e-05 Score=63.45 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=51.0
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec---c-------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG---V-------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~---~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.++...+.+|++|+|.|........ .+.|++. |+... . ....++.... .+....|.|.+++.
T Consensus 5 tQp~sl~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~ 79 (109)
T d1w72l1 5 TQPPSVSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN----SGNMATLTISRVEA 79 (109)
T ss_dssp BCCSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCCG
T ss_pred eeCCeEEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeec----CCCccceEEeeecc
Confidence 34456678899999999987654444 6899973 22111 0 1123333322 23467999999999
Q ss_pred CCCEEEEEEEEcC
Q psy17146 701 DHFGVYNCSVSNP 713 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~ 713 (1011)
+|+|.|.|.+...
T Consensus 80 ~DsavYyCA~~~~ 92 (109)
T d1w72l1 80 GDEADYYCQVWDS 92 (109)
T ss_dssp GGCEEEEEEEEET
T ss_pred CCCEEEEEEecCC
Confidence 9999999988644
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.54 E-value=9e-05 Score=63.69 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=53.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCe--ecC--Cc---c---cCC--CCcceEEeecCCCceeEEEEee
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDF--ALG--PH---R---NLS--GFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~--~l~--~~---~---~~~--~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...|..+.+.+|++|+|.|..... ...+.|||... .+. .. . ... ..+|+..... ....|.|..
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~l~l~~ 80 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTELRLQV 80 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETTEEEEEE
T ss_pred EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc---cccEEEEec
Confidence 5667888999999999999998764 35789998742 210 00 0 000 1134443322 224688999
Q ss_pred cccCCCceEEEEEEeC
Q psy17146 97 VMLDDDARYQCQVSTG 112 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~ 112 (1011)
++.+|++.|.|.....
T Consensus 81 ~~~~dsa~Y~Ca~~~~ 96 (112)
T d1fo0b_ 81 ANMSQGRTLYCTCSAD 96 (112)
T ss_dssp ESCCSCEEEEEEEESS
T ss_pred CCccCCccEEEEEecC
Confidence 9999999999997543
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.54 E-value=5.4e-05 Score=64.58 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc---c--CCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR---N--LSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~---~--~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
...-.+++|++++|.|++++. ...+.|+|.. +.+. ... . -+..+|+.|..+.......|.|.++
T Consensus 6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL 85 (124)
T d1zvya1 6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV 85 (124)
T ss_dssp ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc
Confidence 345578899999999999973 3468998753 2221 100 0 1123699999988888889999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 86 ~~eDtAvYYCAr~~ 99 (124)
T d1zvya1 86 KSEDTAIYTCGATR 99 (124)
T ss_dssp CGGGCEEEEEEECS
T ss_pred cCCcceEEEEeecc
Confidence 99999999998754
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.54 E-value=0.00013 Score=62.89 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=51.1
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeE---ecc-cC-------CCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEE---IGV-GS-------SDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~---l~~-~~-------~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+....+.+|++|+|.|..........+.||+. |.. +.. .. ..++..... ..+....|.|.+++.+
T Consensus 7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~~ 84 (114)
T d2ak4d1 7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQ--KSTSSFNFTITASQVV 84 (114)
T ss_dssp CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEE--TTTTEEEEEESSCCGG
T ss_pred CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEc--CCCCEEEEeecccccc
Confidence 45567999999999998765443326899983 221 110 00 112222111 1234578999999999
Q ss_pred CCEEEEEEEEcCCCC
Q psy17146 702 HFGVYNCSVSNPYGS 716 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~ 716 (1011)
|+|.|.|.+....+.
T Consensus 85 Dsg~YyCa~~~~~~~ 99 (114)
T d2ak4d1 85 DSAVYFCALSGFYNT 99 (114)
T ss_dssp GCEEEEEEEECSBTT
T ss_pred cCCCceEeCCCCCCC
Confidence 999999988766543
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.54 E-value=0.00015 Score=62.25 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=52.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE--ecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE--IGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~--l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
|....+.+|++|+|+|...+.... ..+.|++. |.. .......++....+. ......|+|.+++.+|+|.|.|.
T Consensus 7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCa 84 (113)
T d1vesa_ 7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK--GSKSFSLRISDLRVEDSGTYKCQ 84 (113)
T ss_dssp CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEE
T ss_pred CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC--CCCceeeeecccccCCcceEeee
Confidence 456678899999999999765332 16899973 221 112234555554331 22346899999999999999999
Q ss_pred EEc
Q psy17146 710 VSN 712 (1011)
Q Consensus 710 a~N 712 (1011)
+..
T Consensus 85 ~~~ 87 (113)
T d1vesa_ 85 AFY 87 (113)
T ss_dssp EEE
T ss_pred eec
Confidence 864
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=9.7e-05 Score=64.68 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCceeeecCCcEEEEEEEEecC------CCCeEEEEECCeEecc---------------cCCCCeEEecCCcCccceeEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP------PPEKVTWSYRGEEIGV---------------GSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p------~p~~v~W~~~g~~l~~---------------~~~~~~~~~~~~~~~~~~~~L 693 (1011)
+...++.+|+.|+|.|.+.... ....+.|++.+..-.. ...+|+.+..+. .....+|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL 85 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP--QTKNCTL 85 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG--GGTBCCE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC--cCCEEEE
Confidence 4566789999999999985221 1235789885322110 112345554331 2235789
Q ss_pred EEcCCCCCCCEEEEEEEEc
Q psy17146 694 IIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N 712 (1011)
+|.+++.+|+|.|.|.+..
T Consensus 86 ~I~~v~~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 86 SIRDARMSDAGRYFFRMEK 104 (121)
T ss_dssp EECSCCGGGCEEEEEEEEE
T ss_pred EECCCChHHCEEEEEEEEe
Confidence 9999999999999999964
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.53 E-value=0.00012 Score=62.50 Aligned_cols=65 Identities=17% Similarity=0.363 Sum_probs=50.3
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----e-------------------eecCCCcEEEeecCCCCCE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----K-------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----~-------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
...|..+.+.+|++++|.|...+.....+.|++.... . ...+...|+|.+++.+|+|
T Consensus 7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa 86 (109)
T d1bwwa_ 7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA 86 (109)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence 3557788899999999999998776778999985311 0 0122357999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|-+..
T Consensus 87 ~YyCA~~~ 94 (109)
T d1bwwa_ 87 TYYCQQYQ 94 (109)
T ss_dssp EEEEEECS
T ss_pred eEEEeecC
Confidence 99998754
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.53 E-value=1.4e-05 Score=66.91 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=47.9
Q ss_pred CCCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc----------------------cccccccc---c---
Q psy17146 762 PPPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS----------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~----------------------~p~~~Y~f---A--- 811 (1011)
++|.++.+..++.+++.|+| |..+++.+|++|.|+|+.... .|++.|+| |
T Consensus 8 ~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 87 (95)
T d2ibga1 8 PVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSA 87 (95)
T ss_dssp CCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECS
T ss_pred CCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEeC
Confidence 37889999999999999999 556677899999999986433 89999999 4
Q ss_pred CCCCCCC
Q psy17146 812 GHDSETG 818 (1011)
Q Consensus 812 ~G~g~~s 818 (1011)
.|.|++|
T Consensus 88 ~G~s~~S 94 (95)
T d2ibga1 88 ASASEFS 94 (95)
T ss_dssp SCBCCCC
T ss_pred CccCCCC
Confidence 8888776
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.53 E-value=0.00026 Score=59.15 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=48.8
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
+..|+..+|.|.+.|+ |..+.|.|++||..+............+ ......+.|.|.. ++...|+|.+....-...
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~d-gty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p 90 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDG-LSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYT 90 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETT-TEEEEEEEEEECC---CTTCCEEEEEEETTTTEE
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCC-CcEEEEEEEEEec---CCCCEEEEEEEeCCCCCC
Confidence 4568888999999996 6677999999999875322111111111 0111345666654 344479999998854444
Q ss_pred EEEEE
Q psy17146 719 VEIML 723 (1011)
Q Consensus 719 ~~~~l 723 (1011)
.....
T Consensus 91 ~~~~w 95 (103)
T d1hdma1 91 AIAYW 95 (103)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 33333
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.52 E-value=6.9e-05 Score=63.49 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=57.9
Q ss_pred CCceeEEecCcEEEEEEEcCCC---CeeEEeeC--CeecC------Ccc-------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKT---GVLQWTKD--DFALG------PHR-------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~--~~~l~------~~~-------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
...-.+++|++++|.|.+.+.. ..+.|+|. |+.+. ... .-+..+|+.+..+.......|+|.
T Consensus 7 sg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~ 86 (122)
T d1q9rb1 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (122)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence 3455788999999999999743 36889865 33321 100 112236999999888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 87 sL~~eDTAvYYCar~~ 102 (122)
T d1q9rb1 87 TLRAEDSATYYCARDH 102 (122)
T ss_dssp SCCGGGCEEEEEEECC
T ss_pred eeccCcceEEEEEecC
Confidence 9999999999998754
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.52 E-value=0.00016 Score=62.00 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=52.9
Q ss_pred eecCCceeeecCCcEEEEEEEEecC---CCCeEEEEEC--CeEec---c-------cCCCCeEEecCCcCccceeEEEEc
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYR--GEEIG---V-------GSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~--g~~l~---~-------~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
++.|....+.+|++|+|.|...+.. .. .+.|++. |+.+. . ....++.... ......|.|.
T Consensus 4 ltQP~s~~~~~G~svtl~C~~~~~~~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~ 78 (112)
T d1lgva1 4 LTQPASVSGSPGQSITVSCTGVSSIVGSYN-LVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK----SGNSASLTIS 78 (112)
T ss_dssp BBCCSEEEECTTCCEEEEEECCCCSSSCCC-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEEC
T ss_pred ccCCCcEEECCCCCEEEEEEeCCCCCCCCC-cceeeeeeecccceeeeeeeccccCCCcccEEEEC----CCCEeeEEeC
Confidence 4455667799999999999987642 23 5899983 21111 0 1223333332 2346789999
Q ss_pred CCCCCCCEEEEEEEEcCCC
Q psy17146 697 ESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N~~G 715 (1011)
+++.+|+|.|.|.+.+..+
T Consensus 79 ~l~~~Dsa~YyCa~~~~~~ 97 (112)
T d1lgva1 79 GLQAEDEADYYCSSYDGSS 97 (112)
T ss_dssp SCCGGGCEEEEEEEECSSS
T ss_pred cCccccCEEEEEeeecCCC
Confidence 9999999999998876443
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.52 E-value=0.00018 Score=59.99 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.5
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..|+.++|.|.+.+.+|. ..++|++||..+..+.............+...+.|.+.. .+...|+|.+.+..-.
T Consensus 17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl~ 90 (101)
T d1fnga1 17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGLE 90 (101)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTCS
T ss_pred cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCCC
Confidence 347788999997777885 599999999887655433322333334677778888865 3455799999997543
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=1.2e-05 Score=70.41 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=49.7
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc----------------------cccccccc---c---
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------------~p~~~Y~f---A--- 811 (1011)
|.+|.++.+..++.+++.++| ++.+.+++|++|.|+|+.... .|++.|.| |
T Consensus 21 P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 100 (117)
T d1wfoa1 21 PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTR 100 (117)
T ss_dssp CCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEECS
T ss_pred CcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEEECC
Confidence 338999999999999999999 666667799999999876543 89999999 5
Q ss_pred CCCCCCCc
Q psy17146 812 GHDSETGS 819 (1011)
Q Consensus 812 ~G~g~~ss 819 (1011)
.|.|++|.
T Consensus 101 ~G~g~~S~ 108 (117)
T d1wfoa1 101 KGWGEAAE 108 (117)
T ss_dssp SCEEEEEE
T ss_pred CcCCCCcC
Confidence 88888873
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.51 E-value=1.7e-05 Score=67.74 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCCCCcccccccccccccc---cCCCCCCCCcCcceeeecCcc----------------------cccccccc---c---
Q psy17146 763 PPGNGIEHHVTADGEKNQC---KESDNSSNISDIKLEFRTGSS----------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W---~~~d~~s~I~~Y~ve~~~~~~----------------------~p~~~Y~f---A--- 811 (1011)
+|.++++..++.+++.++| +..+.+++|.+|+|+|+.... .|+++|+| |
T Consensus 7 ~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~ 86 (105)
T d1cfba2 7 NPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIND 86 (105)
T ss_dssp CCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEET
T ss_pred CCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEeC
Confidence 7899999999999999999 345677899999999986543 88899999 5
Q ss_pred CCCCCCCcc
Q psy17146 812 GHDSETGSE 820 (1011)
Q Consensus 812 ~G~g~~ss~ 820 (1011)
.|.|.+|+.
T Consensus 87 ~G~gp~S~~ 95 (105)
T d1cfba2 87 RGESNVAAE 95 (105)
T ss_dssp TEECSSCCC
T ss_pred CcCCCCCCC
Confidence 899988843
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.51 E-value=0.0001 Score=62.94 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=54.9
Q ss_pred CCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC------Ccc-----cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG------PHR-----NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~------~~~-----~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.....+++|+++.|.|.+.+. ...+.|+|.- +.+. ... .-...+|+.+..+.......|.|.++
T Consensus 6 sG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l 85 (126)
T d1rjca1 6 SGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL 85 (126)
T ss_dssp BCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence 345578899999999999873 3478898753 3221 100 11123699999888778888999999
Q ss_pred ccCCCceEEEEEEe
Q psy17146 98 MLDDDARYQCQVST 111 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~ 111 (1011)
+.+|++.|.|....
T Consensus 86 ~~eDTAvYYCAr~~ 99 (126)
T d1rjca1 86 KPEDTAMYYCAADT 99 (126)
T ss_dssp CGGGCEEEEEEECC
T ss_pred CcccCceeEEEeec
Confidence 99999999998654
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=7.2e-06 Score=68.51 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=51.1
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCCC
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDS 815 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g 815 (1011)
+|. +.+...+.+++.++| ++.+++++|.+|.|+++.... .|++.|.| | .|.|
T Consensus 3 ~P~-~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 81 (94)
T d2dn7a1 3 RPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLG 81 (94)
T ss_dssp CCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred CCc-EeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcCCcCC
Confidence 443 445667788999999 777888899999999987544 88999999 5 8899
Q ss_pred CCCcccccccccc
Q psy17146 816 ETGSESVHTRIGV 828 (1011)
Q Consensus 816 ~~ss~~~~t~~~~ 828 (1011)
+++...+.|.+++
T Consensus 82 ~~s~~~~~T~edV 94 (94)
T d2dn7a1 82 EEFEKEIRTPEDL 94 (94)
T ss_dssp EEEEEEEECCCCC
T ss_pred CCccEEEeeCCCC
Confidence 8886666676653
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.50 E-value=0.00012 Score=62.38 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=56.1
Q ss_pred CceeEEecCcEEEEEEEcCC---C-CeeEEeeC--CeecC------Cc----ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK---T-GVLQWTKD--DFALG------PH----RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~---~-~~v~W~k~--~~~l~------~~----~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
....+++|++++|.|.+.+. . ..+.|+|. |+.+. .. ..-...+|+.+..+.......|.|.+++
T Consensus 8 G~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~ 87 (127)
T d3cx5j1 8 GAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVT 87 (127)
T ss_dssp ECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccc
Confidence 34567889999999999973 2 36789875 43321 00 0112336899998888888899999999
Q ss_pred cCCCceEEEEEE
Q psy17146 99 LDDDARYQCQVS 110 (1011)
Q Consensus 99 ~~D~G~Y~C~~~ 110 (1011)
.+|++.|.|...
T Consensus 88 ~eDtAvYyCAr~ 99 (127)
T d3cx5j1 88 TEDTATYYCARS 99 (127)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEEeeee
Confidence 999999999854
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.49 E-value=0.0001 Score=63.83 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=56.6
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC------Ccc----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG------PHR----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~------~~~----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+.....+++|++++|.|.+.+.. .-+.|+|.. +.+. ... .-...+|+++..+.......|+|.
T Consensus 6 esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~ 85 (132)
T d1tjgh1 6 ESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMT 85 (132)
T ss_dssp EECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccc
Confidence 33455788999999999998632 257899753 2221 000 011236999988877788899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 86 ~l~~eDtAvYYCAr~~ 101 (132)
T d1tjgh1 86 RVSPVDTATYFCAHRR 101 (132)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred cCCcccceEEEEEEec
Confidence 9999999999998654
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=2.1e-05 Score=67.47 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=49.1
Q ss_pred CCCCCCCC-cccccccccccccc--cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c--
Q psy17146 760 KKPPPGNG-IEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 760 ~~~~p~~~-~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A-- 811 (1011)
+|.+|.++ ....++.+++.|+| |..+++++|..|.++++.... .|++.|.| |
T Consensus 10 ~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n 89 (107)
T d2crma1 10 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCIS 89 (107)
T ss_dssp CCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEE
T ss_pred CCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEEC
Confidence 34466664 44567889999999 456677899999999986543 88999999 5
Q ss_pred -CCCCCCC-cccccc
Q psy17146 812 -GHDSETG-SESVHT 824 (1011)
Q Consensus 812 -~G~g~~s-s~~~~t 824 (1011)
.|.|++| ...++|
T Consensus 90 ~~G~s~~S~~v~v~T 104 (107)
T d2crma1 90 DGGQSAVSESLLVQT 104 (107)
T ss_dssp TTEECCCCCCCCCCC
T ss_pred CCcCcCCCCcEEEEC
Confidence 8999988 434444
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=7.2e-05 Score=63.20 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=50.0
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
...+.+++|.|.+.|+ |..+.|+|++||+.+............+ ......+.|.|..-.......|+|.|.+.....+
T Consensus 18 ~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~-~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~ 96 (104)
T d1o0va1 18 GHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG-ELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE 96 (104)
T ss_dssp SCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEET-TEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred cCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCC-CeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence 3456789999999985 6677899999999986421111111111 0011346788777655555679999999864433
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=1.4e-05 Score=66.85 Aligned_cols=65 Identities=8% Similarity=-0.059 Sum_probs=52.7
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~ 814 (1011)
++|..+.+..++.+++.|+| ++.+.+++|.+|.|+++.... .|++.|.| | .|.
T Consensus 2 ~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 81 (95)
T d2djsa1 2 STVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGY 81 (95)
T ss_dssp CCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCE
T ss_pred CCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCCCC
Confidence 45667889999999999999 667777899999999887643 89999999 5 888
Q ss_pred CCCC-cccccccc
Q psy17146 815 SETG-SESVHTRI 826 (1011)
Q Consensus 815 g~~s-s~~~~t~~ 826 (1011)
|+.| ...++|++
T Consensus 82 g~~S~~~~~~T~~ 94 (95)
T d2djsa1 82 GKFSGKMCFQTLT 94 (95)
T ss_dssp EEECCCEEEECCC
T ss_pred CCCCCCEEEEeCC
Confidence 8887 44566654
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00025 Score=60.65 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred eEEEcCCCcEEEEEEEecCCCC---eEE--EEecCCce-----------------------eecCCCcEEEeecCCCCCE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP---EIT--WIHEDSDK-----------------------VVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p---~v~--W~k~~~~~-----------------------~~~~~~~L~I~~v~~~d~G 604 (1011)
.+.+..|++++|.|.+...+.. .+. |.++.... ....+.+|+|.+++.+|+|
T Consensus 3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G 82 (110)
T d1ncna_ 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG 82 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence 4567889999999998644332 334 44443221 1123468999999999999
Q ss_pred EEEEEEEe
Q psy17146 605 RYYCKASV 612 (1011)
Q Consensus 605 ~Y~C~a~n 612 (1011)
.|.|.+..
T Consensus 83 ~Y~C~V~~ 90 (110)
T d1ncna_ 83 LYQCIIHH 90 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99999975
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.46 E-value=0.00026 Score=58.75 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=50.8
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..|+..+|.|.+.+.+|. ..++|++||..+..+.............+...+.|.+.. ++...|+|++.+....
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl~ 90 (99)
T d1uvqa1 17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWGLD 90 (99)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTSS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence 457788999997777775 689999999888654433222223334566677788765 4456799999987543
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.46 E-value=1.9e-05 Score=66.62 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=55.6
Q ss_pred CceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecCCcccCC----------CCcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALGPHRNLS----------GFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~~~~~~~----------~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
....+++|++++|.|++++. ...+.|+|. |+.+..-..+. ..+|+.+..+.......|.|.+++.
T Consensus 8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~ 87 (116)
T d1fn4b1 8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT 87 (116)
T ss_dssp CCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCC
T ss_pred CCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCC
Confidence 34467789999999999973 336889875 33321100000 1268899888777788999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|++.|.|....
T Consensus 88 eDTAvYyCAr~~ 99 (116)
T d1fn4b1 88 DDTGTYYCTRDL 99 (116)
T ss_dssp CCCEEEEEEEEC
T ss_pred CCCEEEEEEeec
Confidence 999999997643
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=5.2e-05 Score=63.90 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=46.7
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.++.++|.|.+.|+ |..+.|+|++||+.+..+.................+.|.|..........|+|.|......
T Consensus 19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 94 (102)
T d1rzfl2 19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 94 (102)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence 46779999999995 6677899999999886421100011111000113467777665544445799999987543
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.45 E-value=0.00021 Score=61.01 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=52.4
Q ss_pred CCceeeecCCcEEEEEEEEecC--CCCeEEEEEC--Ce--EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP--PPEKVTWSYR--GE--EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~--g~--~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|....+.+|++++|.|...+.. .. .+.||+. |+ .......+++....+. ......|+|.+++.+|+|.|.|
T Consensus 6 P~s~t~~~G~svtl~C~~s~~s~~~~-~i~WYrq~~g~~~~~~~~~~gr~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyC 82 (112)
T d1sq2n_ 6 PRSVTKETGESLTINCVLRDASYALG-STCWYRKKSGEGNEESISKGGRYVETVNS--GSKSFSLRINDLTVEDGGTYRC 82 (112)
T ss_dssp CSEEEECTTCCEEEEEEECSCSSCCC-CEEEEEEETTSCCCEECCCBTTEEEEEET--TTTEEEEEECSCCGGGCEEEEE
T ss_pred CCEEEEcCCCCEEEEEEECCCcccCC-ceEEEEeeccceeeeeeccCCcEeeEEec--CCceeeeEecCCcCccCEEEeE
Confidence 4556788999999999886543 34 7999983 21 1112234455554331 2235689999999999999999
Q ss_pred EEEcCC
Q psy17146 709 SVSNPY 714 (1011)
Q Consensus 709 ~a~N~~ 714 (1011)
.+.-..
T Consensus 83 A~~~~~ 88 (112)
T d1sq2n_ 83 GLGVAG 88 (112)
T ss_dssp EECBTT
T ss_pred EEecCC
Confidence 876543
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.44 E-value=0.00016 Score=62.09 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=50.8
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.|....+.+|++|+|.|...+...-..+.|||. |+.+.. ....++.+.. +.....|+|.+++.+
T Consensus 4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~ 79 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE----DRKSSTLILHRATLR 79 (112)
T ss_dssp CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT----TSSEEEEEESSCCGG
T ss_pred CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecc----cCCeeEEEEeecccc
Confidence 455667899999999999876554225899983 222210 0112222222 334578999999999
Q ss_pred CCEEEEEEEEcC
Q psy17146 702 HFGVYNCSVSNP 713 (1011)
Q Consensus 702 d~G~Y~C~a~N~ 713 (1011)
|+|.|.|.+.-.
T Consensus 80 Dsa~YyCa~~~~ 91 (112)
T d1kgcd1 80 DAAVYYCILPLA 91 (112)
T ss_dssp GCEEEEEECCCC
T ss_pred cceeEeeeEecC
Confidence 999999977543
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00013 Score=60.28 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=57.1
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------eccCCcEEEEeeccCCCeEEEEEEEEcC-
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG- 460 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~- 460 (1011)
+|.+...|.. .|..|++|+|.|... .+...+.++|++.... ......+.|.+++.+|+|.|+|......
T Consensus 4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~ 81 (96)
T d1ugna1 4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA 81 (96)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCCC
Confidence 4566666653 578999999999974 5566889999885421 2345689999999999999999876421
Q ss_pred -CcceeeEEEEEE
Q psy17146 461 -FPEVGAEATVYL 472 (1011)
Q Consensus 461 -~~~~s~~~~v~v 472 (1011)
....+..+.|.|
T Consensus 82 ~~S~~Sd~leL~V 94 (96)
T d1ugna1 82 GRSESSDPLELVV 94 (96)
T ss_dssp EECCCCCCEEEEE
T ss_pred CccccCCCEEEEE
Confidence 123344455544
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=0.00031 Score=58.49 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=51.7
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..|+.++|.|.+.+.+|. ..++|++|+..+............++ .+...+.|.+. .++.+.|+|++.+.....
T Consensus 16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dg-tf~~~s~l~v~---~~~~~~ytC~V~H~sl~~ 89 (99)
T d1lk2b_ 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDW-SFYILAHTEFT---PTETDTYACRVKHDSMAE 89 (99)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTC-CEEEEEEEEEC---CCSSCCEEEEEECTTSSS
T ss_pred cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCC-CEEEEEEeEec---CcCCCEEEEEEEeCCCCC
Confidence 457889999997777775 58999999988765443333344444 56666777774 456678999999975543
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.43 E-value=0.00017 Score=61.88 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=58.3
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeC--CeecCC------cc-----cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKD--DFALGP------HR-----NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~--~~~l~~------~~-----~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.....+++|+++.|.|.+++. ...+.|+|. ++.+.. .. .-+..+|+.+..+.......|.|.+
T Consensus 5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~ 84 (133)
T d1rzfh1 5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG 84 (133)
T ss_dssp ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence 4455678999999999999974 336888874 222210 00 1112379999998888889999999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|++.|.|....
T Consensus 85 L~~eDtA~YYCAr~~ 99 (133)
T d1rzfh1 85 LRSDDTAVYYCASNS 99 (133)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCCCCCEEEEeeecc
Confidence 999999999997654
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=0.00016 Score=62.87 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=46.2
Q ss_pred CCceEEEcCCCcEEEEEEEecC---C---CCeEEEEecCCce---------------------e-----ecCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGN---P---APEITWIHEDSDK---------------------V-----VGNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~---p---~p~v~W~k~~~~~---------------------~-----~~~~~~L~I~~ 597 (1011)
.|..+.+.+|+.|+|.|.+... + .-.+.|++..... . ...+.+|+|.+
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 4678899999999999998632 1 1245677753210 0 12346799999
Q ss_pred cCCCCCEEEEEEEEe
Q psy17146 598 TSDDLAGRYYCKASV 612 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n 612 (1011)
++.+|+|.|.|++..
T Consensus 86 v~~~DsG~Y~C~v~~ 100 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEI 100 (118)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CChhHCEEEEEEEEe
Confidence 999999999999985
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=2.9e-05 Score=65.17 Aligned_cols=65 Identities=6% Similarity=-0.024 Sum_probs=52.6
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CC
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G 813 (1011)
|.+|..+.+..++.+++.++| ++.+.+++|.+|.|+|+...+ .|++.|.| | .|
T Consensus 4 P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G 83 (98)
T d1x5la1 4 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAG 83 (98)
T ss_dssp CCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEETTE
T ss_pred CCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEcCCC
Confidence 448889999999999999999 667777899999999986543 89999999 4 78
Q ss_pred CCCCC-ccccccc
Q psy17146 814 DSETG-SESVHTR 825 (1011)
Q Consensus 814 ~g~~s-s~~~~t~ 825 (1011)
.|..| ...++|.
T Consensus 84 ~g~~S~~v~~~T~ 96 (98)
T d1x5la1 84 CGRFSQAMEVETG 96 (98)
T ss_dssp ECCCCCCEEEECC
T ss_pred CcCCCCCEEEEcC
Confidence 88877 4445553
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.42 E-value=0.00023 Score=60.76 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=50.1
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e-------------------------eecCCCcEEEeec
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K-------------------------VVGNSPNLTLLMT 598 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~-------------------------~~~~~~~L~I~~v 598 (1011)
.+...|..+.+.+|++++|.|...+ ....+.|+|.... . .......|+|.++
T Consensus 3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (110)
T d2aq2a1 3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA 81 (110)
T ss_dssp SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence 3556688889999999999998765 3568999985311 0 0122357999999
Q ss_pred CCCCCEEEEEEEEe
Q psy17146 599 SDDLAGRYYCKASV 612 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n 612 (1011)
..+|+|.|.|-+..
T Consensus 82 ~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 82 TPSQTSVYFCASGG 95 (110)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CHhhCEEEEEeeCC
Confidence 99999999998775
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.41 E-value=9.8e-05 Score=62.72 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=50.6
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec--c--------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG--V--------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~--~--------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.|....+.+|++|+|.|........ .+.|++. |+.+. . +...++.... ......|.|.+++.
T Consensus 4 tQP~s~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~----~~~~~~L~I~~l~~ 78 (108)
T d1nfde1 4 IQPSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST----SGTTATLTISGAQP 78 (108)
T ss_dssp ECCSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEETTCCG
T ss_pred ECCCeeEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecC----CCCEeeeeEcCccc
Confidence 44556778899999999987544444 6899983 32111 1 1223454433 23457899999999
Q ss_pred CCCEEEEEEEE
Q psy17146 701 DHFGVYNCSVS 711 (1011)
Q Consensus 701 ~d~G~Y~C~a~ 711 (1011)
+|+|.|.|.+.
T Consensus 79 ~Dsa~YyCA~~ 89 (108)
T d1nfde1 79 EDEAAYYCLSS 89 (108)
T ss_dssp GGCSEEEEEEE
T ss_pred cCCceEEEEee
Confidence 99999999876
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.41 E-value=0.00022 Score=59.05 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=50.3
Q ss_pred cCCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..++.+.|.|.+.+.+| ...++|++|+..+..+.............+...+.|.|. .++...|+|.+.+.....
T Consensus 15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~~ 89 (98)
T d1hdmb1 15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAPE 89 (98)
T ss_dssp SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSSS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCCC
Confidence 45778999999776777 578999999988765433222222223356666778775 445668999999975543
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.41 E-value=0.00018 Score=61.55 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=52.8
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
+.|....+.+|++|+|.|...+.... .-+.|++. ++.+.. ...+++....+. ......|.|.+++
T Consensus 5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~l~ 82 (111)
T d1cd0a_ 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDR--SSNSASLTISGLK 82 (111)
T ss_dssp ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TTTEEEEEECSCC
T ss_pred ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecC--CCCccccccccCC
Confidence 34556779999999999998765432 14899983 222110 122344443321 2346799999999
Q ss_pred CCCCEEEEEEEEcC
Q psy17146 700 HDHFGVYNCSVSNP 713 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~ 713 (1011)
.+|+|.|.|.+.+.
T Consensus 83 ~~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 83 TEDEADYYCQSYDA 96 (111)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cccCcEEEEeeccC
Confidence 99999999987643
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.0002 Score=60.11 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.++.+.|.|.+.+.+|. .+|+|++||..+..+..........+..+...+.|.|..........|+|++.+..
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 35678999997777785 68999999887765443322223333467778899998887778899999999864
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=1.5e-05 Score=68.33 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=52.1
Q ss_pred CCCCCcccccccccccccc-c-CCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CC
Q psy17146 763 PPGNGIEHHVTADGEKNQC-K-ESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~-~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G 813 (1011)
+|.++.+..++.+++.|+| + ..+++++|.+|.|+++.... .|++.|.| | .|
T Consensus 13 ~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~n~~G 92 (107)
T d1x5fa1 13 APRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHG 92 (107)
T ss_dssp CCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred CCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEEeCCC
Confidence 7889999999999999999 4 45678899999999986543 89999999 5 88
Q ss_pred CCCCC-cccccccc
Q psy17146 814 DSETG-SESVHTRI 826 (1011)
Q Consensus 814 ~g~~s-s~~~~t~~ 826 (1011)
.|.+| ...++|.+
T Consensus 93 ~g~~S~~i~v~T~~ 106 (107)
T d1x5fa1 93 SGESSAPLRVETQP 106 (107)
T ss_dssp EEEECCCEEEECCC
T ss_pred CcCCCCCEEEECCC
Confidence 88887 44555543
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=2.6e-05 Score=66.21 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=52.1
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------------cccccccc---
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------------VSNVHLDY--- 810 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------------~p~~~Y~f--- 810 (1011)
|.+|.++++..++.+++.|+| ++.+++++|++|.|+++.... .|+++|.|
T Consensus 3 P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 82 (103)
T d1qg3a2 3 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVK 82 (103)
T ss_dssp CCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEEEE
T ss_pred CccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEEEE
Confidence 448999999999999999999 888888999999999875432 78899999
Q ss_pred c---CCCCCCCcccc
Q psy17146 811 A---GHDSETGSESV 822 (1011)
Q Consensus 811 A---~G~g~~ss~~~ 822 (1011)
| .|.|++++..+
T Consensus 83 A~n~~G~g~~s~~~v 97 (103)
T d1qg3a2 83 ARNGAGWGPEREAII 97 (103)
T ss_dssp EEETTEECCCEEEEE
T ss_pred EEcCCccCCCccccc
Confidence 5 88888775443
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00023 Score=58.78 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=42.8
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++||+.+..+....-...+........+.|.+.. .+...|+|.+....
T Consensus 14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~ 84 (95)
T d1k5na1 14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG 84 (95)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence 35689999999998 666789999999988753211111111100111234555543 34447999998764
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0001 Score=62.30 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=49.1
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCe-EEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDY-SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
..++.++|.|.+.|+ |..+.|+|++||+.+........ ............+.|.|..-.......|+|.|.......
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~ 95 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP 95 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence 346789999999985 66679999999998764210000 011110001135678887766566668999999876543
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=2e-05 Score=67.61 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A--- 811 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A--- 811 (1011)
.+.||.++.+. .+.+++.|+| ++.+++++|++|+|+++.... .|+++|.| |
T Consensus 7 ~~sPP~~~~~~-~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~ 85 (108)
T d1v5ja_ 7 GLSPPRGLVAV-RTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAG 85 (108)
T ss_dssp CCCCCEEEEEE-ECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEET
T ss_pred CCCcCCCeEEE-EcCCEEEEEEEecccCCCceeEEEEEeeeeeeeeeeccccccceeeeEEEEeccCCcEEEEEEEEEeC
Confidence 34488888764 4778999999 777788899999999987644 88899999 5
Q ss_pred CCCCCCC-cccccccc
Q psy17146 812 GHDSETG-SESVHTRI 826 (1011)
Q Consensus 812 ~G~g~~s-s~~~~t~~ 826 (1011)
.|.|++| ...++|.+
T Consensus 86 ~g~s~~S~~~~~~T~~ 101 (108)
T d1v5ja_ 86 SFVSDPSNTANVSTSG 101 (108)
T ss_dssp TEEEEECSCCCCCCSS
T ss_pred CCEeCCcCceEEECCC
Confidence 8889888 44455543
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.39 E-value=0.00031 Score=59.16 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=47.2
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECC--eE---e-------cccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG--EE---I-------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g--~~---l-------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++|+|.|.... ... .+.||+.. .. + ..+...++.... .+....|.|.+++.+|
T Consensus 7 P~~l~~~~G~~vtl~C~~s~-~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~~~D 80 (104)
T d1yqvl1 7 PAIMSASPGEKVTMTCSASS-SVN-YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG----SGTSYSLTISSMETED 80 (104)
T ss_dssp SSEEEECTTCCEEEEEEESS-CCS-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred CCeEEECCCCCEEEEEEeCC-CCC-ccEEEEeeccCceEEEEecccccCCCcCceEEEec----CCCEEEEEecccCccc
Confidence 45667899999999998643 333 57999831 11 1 001223333322 2345789999999999
Q ss_pred CEEEEEEEE
Q psy17146 703 FGVYNCSVS 711 (1011)
Q Consensus 703 ~G~Y~C~a~ 711 (1011)
+|.|.|.+.
T Consensus 81 sa~YyCa~~ 89 (104)
T d1yqvl1 81 AATYYCQQW 89 (104)
T ss_dssp CEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999764
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00034 Score=57.98 Aligned_cols=79 Identities=10% Similarity=0.163 Sum_probs=49.9
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...|..|++|+|.|... .....+.++|+|..... ...........+..+.+.|.+++..|+|+|+|
T Consensus 4 kPsLsa~P~~~v~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~----~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C 77 (98)
T d1ugna2 4 KPTLSAQPSPVVNSGGNVTLQCDSQ--VAFDGFILCKEGEDEHP----QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 77 (98)
T ss_dssp CCEEEEESCSEEETTCCEEEEEECS--SCCSEEEEEEC----------CEEEC------CCEEEEEECCCCTTSCEEEEE
T ss_pred CCEEEeeCCCccCCCCcEEEEeCCC--CCCCEEEEEECCCcCCc----EeeeeEEcCCCceEEEEEeeecccCCCeEEEE
Confidence 5777766667799999999999743 33337888898875331 11111111113345789999999999999999
Q ss_pred EEEcC
Q psy17146 709 SVSNP 713 (1011)
Q Consensus 709 ~a~N~ 713 (1011)
.-...
T Consensus 78 ~y~~~ 82 (98)
T d1ugna2 78 YAYDS 82 (98)
T ss_dssp EEECT
T ss_pred eeEcC
Confidence 87543
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00051 Score=56.58 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=48.0
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
.|+.++|.|.+.|. |.+ .|+|++||+.+... ....... ..++ ..+.|.|.. .+...|+|.+++..-..
T Consensus 15 s~~~~~L~C~~~g~~P~~-~V~W~~n~~~~~~~---~~~~~~~-~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~ 86 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEP-HLSWLENGEELNAI---NTTVSQD-PETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRV 86 (95)
T ss_dssp STTEEEEEEEEEEESSCE-EEEEEESSCEECCS---EEEEEEC-TTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCE
T ss_pred CCCEEEEEEEECcccCCC-EEEEecCCcEeccc---ceeeEec-CCCccEEEEEEEEccC---CccceEEEEEEecCCCC
Confidence 47789999999984 888 99999999988631 1122111 1122 245676653 45678999999886655
Q ss_pred EEEE
Q psy17146 718 SVEI 721 (1011)
Q Consensus 718 ~~~~ 721 (1011)
...+
T Consensus 87 ~~~~ 90 (95)
T d1dr9a2 87 NQTF 90 (95)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5443
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.37 E-value=0.00024 Score=60.57 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=47.5
Q ss_pred ecCCceEEEcCCCcEEEEEEEecC----CCCeEEEEecCC--ce---------------------eecCCCcEEEeecCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGN----PAPEITWIHEDS--DK---------------------VVGNSPNLTLLMTSD 600 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~----p~p~v~W~k~~~--~~---------------------~~~~~~~L~I~~v~~ 600 (1011)
...|..+.+.+|++|+|.|..... ....+.|++... .. .......|+|.+++.
T Consensus 5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~ 84 (111)
T d2gsia1 5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE 84 (111)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence 355778889999999999987543 223589998631 10 012235799999999
Q ss_pred CCCEEEEEEEEe
Q psy17146 601 DLAGRYYCKASV 612 (1011)
Q Consensus 601 ~d~G~Y~C~a~n 612 (1011)
+|++.|.|.+..
T Consensus 85 ~DsA~YyCa~~~ 96 (111)
T d2gsia1 85 EDAATYYCSHIR 96 (111)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCceEEEEECC
Confidence 999999997653
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.36 E-value=0.00043 Score=57.51 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEE
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTC 213 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 213 (1011)
+|.+...+.-.+..|++|+|.|+. ..+...+.|+|++.......... ..... ...+.|..+...|+|.|+|
T Consensus 6 kPsLsa~P~~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~--~~~~~-----~~~f~~~~~~~~~~G~Y~C 76 (99)
T d1nkra2 6 KPSLSAQPGPTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERRLPAG--PKVNG-----TFQADFPLGPATHGGTYRC 76 (99)
T ss_dssp CCEEEEESCSEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEEEECE--EEETT-----EEEEEEEEEECCSCEEEEE
T ss_pred CCEEEEeCCCcccCCCeEEEEECC--CCCccEEEEEECCCccccEEEcc--ccCCc-----cEEEEEeccccccCEEEEE
Confidence 455554445567889999999983 34567899999876543211110 11111 2456777888899999999
Q ss_pred EEEeC
Q psy17146 214 QAQNT 218 (1011)
Q Consensus 214 ~a~n~ 218 (1011)
.....
T Consensus 77 ~y~~~ 81 (99)
T d1nkra2 77 FGSFH 81 (99)
T ss_dssp EEEET
T ss_pred EeecC
Confidence 87644
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.36 E-value=0.00016 Score=62.01 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCceeEEecCcEEEEEEEcCCC---CeeEEeeCC--eecC------Ccc-------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKT---GVLQWTKDD--FALG------PHR-------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~---~~v~W~k~~--~~l~------~~~-------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.....+++|++++|.|.+.+.. ..+.|+|.- +.+. ... .-...+|+.+..+.......|.|.
T Consensus 7 sG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~ 86 (131)
T d3c2ah1 7 SGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMN 86 (131)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeeccee
Confidence 3456789999999999999743 368888753 2221 000 112346999999888888899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|++.|.|....
T Consensus 87 ~L~~eDTAvYYCAR~~ 102 (131)
T d3c2ah1 87 SLKTEDTAVYSCTTDG 102 (131)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred ccccCCceEEEEeccc
Confidence 9999999999998653
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00013 Score=61.62 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=55.5
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.++.++|.|.+.+.+|. ..|+|++||.++..+..... .....+..+...+.|.|..........|+|++.+.....
T Consensus 18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~ 95 (105)
T d1fp5a2 18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP 95 (105)
T ss_dssp SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence 46679999997777884 79999999988765443221 223334467778899998877777788999999975533
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.35 E-value=0.0002 Score=61.38 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=51.3
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--e---------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--V---------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~---------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|.........+.|++.... . . .....+|.|.+++.+
T Consensus 3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (111)
T d1bd2d1 3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG 82 (111)
T ss_dssp EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence 45567788899999999999988777778999985311 0 0 012358999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|-+..
T Consensus 83 Dsa~YyCa~~~ 93 (111)
T d1bd2d1 83 DSAVYFCAAME 93 (111)
T ss_dssp GCEEEEEEEES
T ss_pred ccEEEEeeccC
Confidence 99999998763
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=2.3e-05 Score=67.00 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---C
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---G 812 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~ 812 (1011)
|.+|.++++..++.+++.++| ++.+.+++|++|.|+|+.... .|++.|.| | .
T Consensus 11 P~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 90 (106)
T d1wfna1 11 PGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSK 90 (106)
T ss_dssp CCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSS
T ss_pred CcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEECCC
Confidence 348899999999999999999 666667799999999986543 89999999 5 7
Q ss_pred CCCCCCcc
Q psy17146 813 HDSETGSE 820 (1011)
Q Consensus 813 G~g~~ss~ 820 (1011)
|.|++|..
T Consensus 91 G~g~~s~~ 98 (106)
T d1wfna1 91 GQGQVSAS 98 (106)
T ss_dssp CEEEEEEE
T ss_pred CCcCCcCC
Confidence 88877744
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.34 E-value=0.00015 Score=61.94 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=47.4
Q ss_pred ecCCceEEEcCCCcEEEEEEEecC----CCCeEEEEecCCc--e--e-------------------ecCCCcEEEeecCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGN----PAPEITWIHEDSD--K--V-------------------VGNSPNLTLLMTSD 600 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~----p~p~v~W~k~~~~--~--~-------------------~~~~~~L~I~~v~~ 600 (1011)
...|..+.+.+|++|+|.|..... ....+.|++.... . . ..+...|.|.+++.
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 84 (111)
T d1j05a_ 5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA 84 (111)
T ss_dssp EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence 355778889999999999987542 2235999986311 0 0 11235899999999
Q ss_pred CCCEEEEEEEEe
Q psy17146 601 DLAGRYYCKASV 612 (1011)
Q Consensus 601 ~d~G~Y~C~a~n 612 (1011)
+|+|.|.|.+.+
T Consensus 85 ~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 85 DDVATYYCQQTN 96 (111)
T ss_dssp GGCEEEEEEECS
T ss_pred ccCccEEEeecC
Confidence 999999997764
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.33 E-value=0.00042 Score=59.08 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=48.7
Q ss_pred CCceeeecCCcEEEEEEEEecCC----CCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP----PEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~----p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
|....+.+|++|+|+|.+.+... -.-+.|++. |+... .+...++.... .+....|.|.++
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~----~~~~~~L~I~~~ 83 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG----SGTDFTLKISRV 83 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSC
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC----CCCEEEEEECcc
Confidence 55677999999999998764322 115889973 22111 11233443322 234568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|...+
T Consensus 84 ~~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 84 EAEDLGVYYCWQGT 97 (112)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCcCEeEEEEcCC
Confidence 99999999996543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.32 E-value=0.00053 Score=56.41 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=50.7
Q ss_pred CeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEE
Q psy17146 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQ 214 (1011)
Q Consensus 135 ~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 214 (1011)
|.+...+.-.+..|++++|.|.. ......+.++|++.......... ..... .....+.|.+++.+|+|.|+|.
T Consensus 3 PsLsa~P~~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~~~--~~~~~---~~~a~F~l~~v~~~~~G~Y~C~ 75 (96)
T d1nkra1 3 PSLLAHPGPLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRLIG--EHHDG---VSKANFSISRMTQDLAGTYRCY 75 (96)
T ss_dssp CEEEEESCSEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEEEC--EEETT---EEEEEEEESSCCGGGCEEEEEE
T ss_pred CEEEeeCCCccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceeeee--eecCC---ceEEEEEEcccCcccCeEEEEE
Confidence 45554445567789999999983 34456899999776432211111 11111 2246899999999999999998
Q ss_pred EEeC
Q psy17146 215 AQNT 218 (1011)
Q Consensus 215 a~n~ 218 (1011)
-...
T Consensus 76 y~~~ 79 (96)
T d1nkra1 76 GSVT 79 (96)
T ss_dssp EEBT
T ss_pred EEcC
Confidence 7654
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.32 E-value=3.5e-05 Score=67.92 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=48.5
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc------------------------------------c
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS------------------------------------V 803 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~------------------------------------~ 803 (1011)
|.+|.+++++. ..+++.|+| ++.+++++|++|.|+|+.... .
T Consensus 8 P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 86 (123)
T d1wfta_ 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYT 86 (123)
T ss_dssp CCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCBCS
T ss_pred CcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcCCC
Confidence 34788888865 577899999 777778899999999875432 6
Q ss_pred ccccccc---c---CCCCCCC-cccccc
Q psy17146 804 SNVHLDY---A---GHDSETG-SESVHT 824 (1011)
Q Consensus 804 p~~~Y~f---A---~G~g~~s-s~~~~t 824 (1011)
|++.|.| | .|.|++| ...++|
T Consensus 87 p~t~Y~frV~A~N~~G~Gp~S~~~~~~t 114 (123)
T d1wfta_ 87 SRPAIVFRISAKNEKGYGPATQIRWLQG 114 (123)
T ss_dssp SSCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred CCCEEEEEEEEecCCcCCCCCCcEEEEe
Confidence 7889999 5 8999888 333444
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00015 Score=61.78 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEE-ecCCcCcc---ceeEEEEcCCCCC
Q psy17146 629 RPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSV-LEDPLKEG---IKSTLIIRESRHD 701 (1011)
Q Consensus 629 ~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~~~~---~~~~L~I~~~~~~ 701 (1011)
+|.+. .+....+..|+.++|.|.+.|+ |..+.|+|++||+.+.......... ......++ ..+.|.|..-...
T Consensus 4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~ 83 (108)
T d1ow0a2 4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 83 (108)
T ss_dssp CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence 45443 2333345678899999999986 6667999999999886421110000 11001122 3457777765544
Q ss_pred CCEEEEEEEEcCC
Q psy17146 702 HFGVYNCSVSNPY 714 (1011)
Q Consensus 702 d~G~Y~C~a~N~~ 714 (1011)
....|+|.|....
T Consensus 84 ~g~~ytC~V~H~s 96 (108)
T d1ow0a2 84 KGDTFSCMVGHEA 96 (108)
T ss_dssp HTCCEEEEEECTT
T ss_pred CCCEEEEEEEeCC
Confidence 4568999998865
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.31 E-value=0.00074 Score=56.93 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=51.2
Q ss_pred CceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEec--------------ccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEIG--------------VGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l~--------------~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
....+++|++++|+|.+.|.... ..+.|++. |+.+. ..-.+|+.+..+. ......|.|.++
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~--s~nt~~L~i~~l 85 (120)
T d1dn0b1 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT--SKNQFSLKLSSV 85 (120)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccC--chheeccccccc
Confidence 34568899999999999998653 25789873 22211 1123577776542 223467999999
Q ss_pred CCCCCEEEEEEE
Q psy17146 699 RHDHFGVYNCSV 710 (1011)
Q Consensus 699 ~~~d~G~Y~C~a 710 (1011)
+.+|++.|.|..
T Consensus 86 ~~eDtA~YYCAr 97 (120)
T d1dn0b1 86 TAADTAVYYCAR 97 (120)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccccEEEEEe
Confidence 999999999943
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=0.00036 Score=60.38 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=46.3
Q ss_pred CceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCce--------------------------eecCCCcEEEeecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDK--------------------------VVGNSPNLTLLMTSDD 601 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~--------------------------~~~~~~~L~I~~v~~~ 601 (1011)
|..+.+.+|++++|.|........ .+.|+|..... ...+...|+|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 556778899999999998654433 47899853211 0112358999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999999874
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.31 E-value=0.00043 Score=59.07 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=48.0
Q ss_pred CCceeeecCCcEEEEEEEEecC----CCCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP----PPEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p----~p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+....+.+|++|+|.|...+.- ....+.|++. |+... .+...++.... .+....|.|.++
T Consensus 8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~----s~~~~~L~Is~~ 83 (112)
T d1mjul1 8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG----SGTAFTLRISRV 83 (112)
T ss_dssp CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----CSSEEEEEESSC
T ss_pred CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec----CCCEEEEEECCc
Confidence 4466788999999999987632 1225899973 22111 11233444433 334678999999
Q ss_pred CCCCCEEEEEEE
Q psy17146 699 RHDHFGVYNCSV 710 (1011)
Q Consensus 699 ~~~d~G~Y~C~a 710 (1011)
+.+|++.|.|..
T Consensus 84 ~~~DsAvYyCa~ 95 (112)
T d1mjul1 84 EAEDVGVYYCLQ 95 (112)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccCCceEEEEe
Confidence 999999999954
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00036 Score=58.01 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=51.1
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..|+.+.|.|.+.+.+|. ..++|++|+..+............++ .+...+.|.+. .++.+.|+|.+.+.....
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dg-ty~~~s~l~v~---~~~~~~ytC~V~H~sl~~ 90 (100)
T d1k5nb_ 17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDW-SFYLLYYTEFT---PTEKDEYACRVNHVTLSQ 90 (100)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTS-CEEEEEEEEEC---CCSSCCEEEEEECTTCSS
T ss_pred cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCC-cEEEEEEeEEC---CCCCCEEEEEEEeCCCCC
Confidence 468899999997777775 48999999988754333333334444 45556777774 456778999999975543
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=0.00027 Score=57.45 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=42.8
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++||+.+..+....-...+........+.|.|..-. ...|+|.+....
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~---~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGK---EQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESST---TTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCcC---CCEEEEEEEECC
Confidence 45789999999996 66778999999998864211000111110111134566666433 336999997653
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.30 E-value=0.00012 Score=62.68 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=50.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--e---------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--V---------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~---------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|.........+.|++.... . . ..+..+|+|.++..+
T Consensus 2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 34567788899999999999987766668999986311 0 0 011257999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (110)
T d1u3ha1 82 DSATYFCAASA 92 (110)
T ss_dssp SCSEEEECCEE
T ss_pred CceeEeeeecC
Confidence 99999998874
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00024 Score=59.83 Aligned_cols=72 Identities=22% Similarity=0.410 Sum_probs=54.1
Q ss_pred CCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 147 EDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+..+.|.|.+.+.+|.. .|+|++++..+..+......... +..+...+.|.|..........|+|++.+..
T Consensus 20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~-~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (104)
T d1o0va1 20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSDRTYTCQVTYQG 92 (104)
T ss_dssp CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCC-CCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence 356789999966668865 79999999888765444333333 3467778899998877677788999999974
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=4.1e-05 Score=63.82 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---C
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---G 812 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~ 812 (1011)
..|+|.++++.+++.+++.|+|.+.+ +++|++|.|+++.... .|.++|.| | .
T Consensus 5 ~vp~P~~l~v~~~t~~si~l~W~~p~-~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~ 83 (95)
T d2fnba_ 5 EVPQLTDLSFVDITDSSIGLRWTPLN-SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLING 83 (95)
T ss_dssp CSCCCTTCEEECCCSSCEEEECCCCC-CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETT
T ss_pred CcCcCCCeEEEEEcCCEEEEEEEecC-CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCC
Confidence 45589999999999999999993333 4579999999986543 88899999 5 7
Q ss_pred CCCCCCcccc
Q psy17146 813 HDSETGSESV 822 (1011)
Q Consensus 813 G~g~~ss~~~ 822 (1011)
|.|+|++...
T Consensus 84 g~s~p~~~~~ 93 (95)
T d2fnba_ 84 GESAPTTLTQ 93 (95)
T ss_dssp EECCCCEEEE
T ss_pred cEeCCEEEEE
Confidence 8888775443
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.28 E-value=0.00059 Score=57.16 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=53.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------c---------ccCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------G---------VGSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~---------~~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.+.|.... ..+.|++. |+.+ . ..-.+|+.+..+. ......|+|
T Consensus 6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~--s~~t~~L~i 83 (117)
T d1iqdb1 6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADT--STNIAYMEL 83 (117)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccc--ccceEEEee
Confidence 3444568899999999999997652 25789873 2221 1 1124566666532 123457999
Q ss_pred cCCCCCCCEEEEEEEEcCC
Q psy17146 696 RESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.+++.+|++.|.|......
T Consensus 84 ~~L~~eDtAvYYCA~~~~~ 102 (117)
T d1iqdb1 84 SSLRSDDTAVYYCAVPDPD 102 (117)
T ss_dssp CSCCGGGCEEEEEEECSSS
T ss_pred cccCcCcceEEEEeEcCCC
Confidence 9999999999999876543
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.28 E-value=0.00029 Score=60.80 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--Ce---Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GE---EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~---~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++++|.|...+.-.. .+.||+. |+ .|.. ....++.... .+....|.|.+++.+|
T Consensus 8 P~sv~~~~G~svtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~~~D 82 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQPED 82 (119)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCGGG
T ss_pred CCEEEECCCCCEEEEEEeCCCCcc-eeEEeeeecccccEEEEEeeccccCceeeeecccC----CCCEEEEEcccCccCC
Confidence 445668899999999987654444 6899983 11 1111 1223343322 2335689999999999
Q ss_pred CEEEEEEEEc
Q psy17146 703 FGVYNCSVSN 712 (1011)
Q Consensus 703 ~G~Y~C~a~N 712 (1011)
+|.|.|.+.+
T Consensus 83 savYyCa~~~ 92 (119)
T d1f3rb2 83 VATYFCYQYN 92 (119)
T ss_dssp CSEEEEEEES
T ss_pred CeEEEeeccC
Confidence 9999997654
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.28 E-value=0.00062 Score=58.88 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=53.1
Q ss_pred cCCceeeecCCcEEEEEEEEecCC--CCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPP--PEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.+....+.+|++++|+|...+... . .+.|++. |+.+. ....+++....+. ......|.|.+++
T Consensus 7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~-~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~--~~~~~~L~i~~~~ 83 (120)
T d1hxma1 7 EHQTVPVSIGVPATLRCSMKGEAIGNY-YINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI--AKNLAVLKILAPS 83 (120)
T ss_dssp SCSEEEEETTCCEEEEEEECSSCGGGS-EEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG--GGTEEEEEESSCC
T ss_pred cCCCEEECCCCCEEEEEEEeccCccCC-cCeEEEccccccceeeeccccceeecccccceeeccc--cccceeccccccc
Confidence 445667899999999999987643 3 6899983 22111 1123455554431 2345899999999
Q ss_pred CCCCEEEEEEEEcC
Q psy17146 700 HDHFGVYNCSVSNP 713 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~ 713 (1011)
.+|+|.|.|.....
T Consensus 84 ~~Dsa~YyCA~~~~ 97 (120)
T d1hxma1 84 ERDEGSYYCACDTL 97 (120)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccCCceeecCcccC
Confidence 99999999987553
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.28 E-value=0.00032 Score=60.34 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec----cc------CCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG----VG------SSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~----~~------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|....+.+|++++|.|...+. .. .+.||+. |+.+. .. ...++....+ .......|+|.+++.+|
T Consensus 7 P~~~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D 82 (115)
T d1ogad1 7 PQFLSIQEGENLTVYCNSSSV-FS-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG--DARKDSSLHITAAQPGD 82 (115)
T ss_dssp CSEEEEETTCCEEEEEECSSC-CS-CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEEC--TTSSEEEEEESSCCGGG
T ss_pred CCeEEECCCCCEEEEEEECCC-Cc-eEEEEecCCCCceeeeeeeeecccceeecccccccc--cccceeeeeecCCCccc
Confidence 456678999999999987653 33 6899983 22111 00 1123332221 13456799999999999
Q ss_pred CEEEEEEEEcCCC
Q psy17146 703 FGVYNCSVSNPYG 715 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G 715 (1011)
+|.|.|.+....+
T Consensus 83 sa~YyCa~~~~~~ 95 (115)
T d1ogad1 83 TGLYLCAGAGSQG 95 (115)
T ss_dssp CEEEEEEEECTTS
T ss_pred eeeEcccccCCCC
Confidence 9999998875433
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.28 E-value=0.00074 Score=56.74 Aligned_cols=75 Identities=15% Similarity=0.318 Sum_probs=51.3
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------ccc---------CCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GVG---------SSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~~---------~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.+.|.... ..+.|++. |+.+ ... -.+|+.+..+. ......|+|
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~--s~nt~~L~~ 83 (119)
T d1eapb1 6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQ--SSSTAYMQL 83 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEccc--CcceEEeee
Confidence 4445568899999999999998653 25889873 2221 111 12466665431 223468999
Q ss_pred cCCCCCCCEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSV 710 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a 710 (1011)
.+++.+|++.|.|..
T Consensus 84 ~sL~~eDTAvYYCAr 98 (119)
T d1eapb1 84 NSLTSEDSAVYFCKR 98 (119)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred ecccCCcceEEEEEE
Confidence 999999999999953
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.26 E-value=0.00057 Score=58.58 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEE--CCeEecc-------------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSY--RGEEIGV-------------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~--~g~~l~~-------------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|....+.+|++++|.|...+. .. .+.||+ .|+.... ....++..... ......|+|.+++
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~ 80 (113)
T d2ntsp1 6 PRYLIKTRGQQVTLSCSPISG-HR-SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQF---SNSRSEMNVSTLE 80 (113)
T ss_dssp CSEEEEETTCCEEEEEECSTT-CC-EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEEC---TTSCEEEEECSCC
T ss_pred CCeEEECCCCCEEEEEEECCC-CC-EEEEEEeecccceEeeeeecccccccccccccceeeccC---cCCeeEEEECCCC
Confidence 445678999999999986543 34 789998 2322211 11223322221 2335689999999
Q ss_pred CCCCEEEEEEEEcC
Q psy17146 700 HDHFGVYNCSVSNP 713 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~ 713 (1011)
.+|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 81 LGDSALYLCASSLA 94 (113)
T ss_dssp GGGCEEEEEEEESS
T ss_pred cccceeeeeeeeCC
Confidence 99999999988743
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=2.8e-05 Score=68.11 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=45.8
Q ss_pred ccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 820 ESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 820 ~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
..++|.+++|..+|.++.....+ .+...++|+||+....||.+.||+|+||+.+...
T Consensus 2 v~v~T~~~~P~~~P~~v~~~~~~---~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~ 58 (119)
T d1x5ha1 2 VAVRTLSDVPSAAPQNLSLEVRN---SKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS 58 (119)
T ss_dssp CCCCCCCSSCCCCCEEEEEECCS---SSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEE
T ss_pred EEEEcCCCCCCCCCcCeEEEEec---CcEEEEEEEcccccCCCCCEEEEEEEEeeccccc
Confidence 35789999999999998776522 2234569999999999999999999999877654
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.26 E-value=7.7e-05 Score=61.83 Aligned_cols=64 Identities=5% Similarity=-0.152 Sum_probs=52.2
Q ss_pred CCCCCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc----------------cccccccc---c---CCCCCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS----------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~----------------~p~~~Y~f---A---~G~g~~ 817 (1011)
.+|.++++...+.+++.|+| +..+.+..+..|.|+++.... .|++.|.| | .|.|..
T Consensus 4 ~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~g~~ 83 (94)
T d1x5aa1 4 LSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPF 83 (94)
T ss_dssp CCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEEEESSSEEEEESCCSSCEEEEEEEEECSSSCCCC
T ss_pred CCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEEeeccCEEEECCCCCCCEEEEEEEEEcCCcCcCC
Confidence 38889999999999999999 445666778899999988655 99999999 4 888888
Q ss_pred C-ccccccc
Q psy17146 818 G-SESVHTR 825 (1011)
Q Consensus 818 s-s~~~~t~ 825 (1011)
| ...++|.
T Consensus 84 S~~~~~~T~ 92 (94)
T d1x5aa1 84 SPDHEFRTS 92 (94)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEEeC
Confidence 8 4455554
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00048 Score=57.94 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=51.0
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC--CCEEEEEEEEcCCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD--HFGVYNCSVSNPYGS 716 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~--d~G~Y~C~a~N~~G~ 716 (1011)
....+.++|.|.+.|+ |..+.|+|+++|+.+.......-....+ ......+.|+|...+.. ....|+|.|....+.
T Consensus 18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~-gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~ 96 (105)
T d1dn0b2 18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRG-GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 96 (105)
T ss_dssp ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEET-TEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccC-CCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence 3346789999999996 7778999999998765311101111111 00112467777766543 234799999998877
Q ss_pred eEEEEEE
Q psy17146 717 DSVEIML 723 (1011)
Q Consensus 717 ~~~~~~l 723 (1011)
....+.+
T Consensus 97 ~~~~v~~ 103 (105)
T d1dn0b2 97 KEKNVPL 103 (105)
T ss_dssp EEEEEEC
T ss_pred EEeEEec
Confidence 7666543
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=9.6e-05 Score=64.28 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=46.2
Q ss_pred CCCCCCC--cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 812 GHDSETG--SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 812 ~G~g~~s--s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
+|.|.|+ ...++|.+++|. +|.++..... +.+...|+|.||. ..||.+.+|.|+||..+...
T Consensus 2 ~G~G~pss~~v~~~T~~~~P~-~P~~~~~~~~---~~~sv~v~W~~P~--~~~g~i~~Y~i~y~~~~~~~ 65 (117)
T d1wfoa1 2 IGDGSPSHPPILERTLDDVPG-PPMGILFPEV---RTTSVRLIWQPPA--APNGIILAYQITHRLNTTTA 65 (117)
T ss_dssp CCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEE---CSSEEEEECCCCS--CCCSCCCEEEEEEEESSCCC
T ss_pred ccCCCCCCCCEEEECCCCCCc-CCCCcEEEEe---cCCEEEEEEECCC--CCCCceEEEeeeeeeccCCC
Confidence 5899898 466889999995 7888866541 2333466999854 45789999999999877654
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.25 E-value=0.00063 Score=58.04 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=48.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc--------------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV--------------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~--------------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
|....+.+|++++|.|...+. .. .+.|||. |+.+.. ....++..... ......|+|.++
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~L~i~~~ 80 (111)
T d2esve1 6 PSHSVIEKGQTVTLRCDPISG-HD-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT---GGTYSTLKVQPA 80 (111)
T ss_dssp CSEEEEETTCCEEEEEECCTT-CS-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT---TSSSEEEEESSC
T ss_pred CCEEEECCCCCEEEEEEECCC-Cc-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC---CCCEEEEEECCc
Confidence 456678999999999985432 34 7999973 221110 11233433322 233568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
..+|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 81 ELEDSGVYFCASSQ 94 (111)
T ss_dssp CGGGCEEEEEEEES
T ss_pred ccCCCceEEEeeeC
Confidence 99999999998763
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.23 E-value=0.0011 Score=55.55 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------c--------ccCCCCeEEecCCcCccceeEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------G--------VGSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~--------~~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
+....+++|++++|+|.++|.... ..+.|++. |+.+ . ..-.+|+.+..+. ......|+|++
T Consensus 7 SG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~--s~~~~~L~i~~ 84 (116)
T d7fabh1 7 SGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNT--SKNQFSLRLSS 84 (116)
T ss_dssp ECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEET--TTTEEEEEECS
T ss_pred ECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeeccc--chhhhhccccc
Confidence 344568899999999999998653 26889873 2211 1 1123566665432 22356899999
Q ss_pred CCCCCCEEEEEEEEc
Q psy17146 698 SRHDHFGVYNCSVSN 712 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N 712 (1011)
++.+|++.|.|...-
T Consensus 85 L~~eDtAvYyCAr~~ 99 (116)
T d7fabh1 85 VTAADTAVYYCARNL 99 (116)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cccccceEEEeeeec
Confidence 999999999997643
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.23 E-value=0.00031 Score=60.20 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=47.8
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCC------CCeEEEEecCCc--e---------------------eecCCCcEEEeec
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNP------APEITWIHEDSD--K---------------------VVGNSPNLTLLMT 598 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p------~p~v~W~k~~~~--~---------------------~~~~~~~L~I~~v 598 (1011)
...|..+.+.+|++++|.|.+.+.- ...+.|++.... . ...+...|+|.++
T Consensus 5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l 84 (113)
T d1q9ra1 5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV 84 (113)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence 4557788899999999999876431 235999986321 0 1122357999999
Q ss_pred CCCCCEEEEEEEEe
Q psy17146 599 SDDLAGRYYCKASV 612 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n 612 (1011)
+.+|+|.|.|-+.+
T Consensus 85 ~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 85 QAEDLAVYYCKQSY 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCCCeEEEecccC
Confidence 99999999997653
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.23 E-value=0.00097 Score=56.64 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=50.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCC---CeEEEEEC--CeEecc--------------cCCCCeEEecCCcCccceeEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP---EKVTWSYR--GEEIGV--------------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p---~~v~W~~~--g~~l~~--------------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
+....+++|++|+|+|.+.|.... ..+.|+|. |+.+.. .-.+|+.+..+. ......|+|
T Consensus 7 sg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~--s~~~~~L~i 84 (120)
T d2agjh1 7 SGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDA--SKKQVVLTL 84 (120)
T ss_dssp CCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCT--TTTEEEEEE
T ss_pred ECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceeccc--ccceeeeeE
Confidence 334457889999999999986541 25789973 221111 013566665432 223568999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|++.|.|....
T Consensus 85 ~~l~~eDsAvYyCAr~~ 101 (120)
T d2agjh1 85 TNLDPVDTATYYCARTS 101 (120)
T ss_dssp ESCCGGGCEEEEEEEEC
T ss_pred EeeeeccceEEeeEecC
Confidence 99999999999997554
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.23 E-value=0.00061 Score=58.19 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=49.5
Q ss_pred CCceeeecCCcEEEEEEEEecCC----CCeEEEEEC--CeEe----------cccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP----PEKVTWSYR--GEEI----------GVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~----p~~v~W~~~--g~~l----------~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
|....+.+|++|+|.|...+... ...+.||+. |+.. ......++.... .+....|+|.++
T Consensus 9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~ 84 (113)
T d1n4xl_ 9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRV 84 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----CSSEEEEEESSC
T ss_pred CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec----cCCcccCccCCC
Confidence 45677899999999999864322 126899973 2111 111234444432 234579999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|...+
T Consensus 85 ~~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 85 EAEDLGIYYCFQGS 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred CcccCEEEEEEECC
Confidence 99999999996554
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.00057 Score=57.81 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+..+.|.|.+.+.+|. ..|+|++|+..+..+....... ......+...+.|.|..-.......|+|.+.+.....
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~ 96 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 96 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence 35678999997777785 6899999988876543332222 2223467778899998877777889999999876544
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00016 Score=61.60 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=56.2
Q ss_pred eecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEE----eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 144 YTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTE----EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~----~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
.+..++.+.|.|.+.+.+|.. +|+|++||..+..+..... ........+...+.|.|..........|+|++.+.
T Consensus 16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~ 95 (108)
T d1ow0a2 16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE 95 (108)
T ss_dssp TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence 345678999999977778854 9999999988765432221 11223446777889999887777788999999987
Q ss_pred CC
Q psy17146 219 AD 220 (1011)
Q Consensus 219 ~g 220 (1011)
..
T Consensus 96 sl 97 (108)
T d1ow0a2 96 AL 97 (108)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.22 E-value=5.3e-05 Score=64.48 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=40.6
Q ss_pred ccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 826 IGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 826 ~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
+++|..+|.++.+...+ .+...|+|+|+++..+||++++|+|+||+.+...
T Consensus 1 P~~P~~~P~~v~~~~~~---~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~ 51 (105)
T d1cfba2 1 PDVPFKNPDNVVGQGTE---PNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA 51 (105)
T ss_dssp CCCCSCCCSCCEEECSS---TTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTC
T ss_pred CCCCCCCCcCeEEEEcc---CCeEEEEEeCCChhhcCceEEEEEEEeeeecccc
Confidence 36888999998876522 2334569999999999999999999999887654
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=9.5e-05 Score=64.29 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=50.2
Q ss_pred CCCCcccccccccccccc-c--CCCCCCCCcCcceeeecCcc-----------------cccccccc---c---CCCCCC
Q psy17146 764 PGNGIEHHVTADGEKNQC-K--ESDNSSNISDIKLEFRTGSS-----------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 764 p~~~~~~~~~~~s~~~~W-~--~~d~~s~I~~Y~ve~~~~~~-----------------~p~~~Y~f---A---~G~g~~ 817 (1011)
|........+.+++.|+| + ..+.+++|++|.|+|+.... .|+++|.| | .|.|.+
T Consensus 21 pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~ 100 (117)
T d1wj3a_ 21 PPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTS 100 (117)
T ss_dssp CCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEESSSEEEEECCCSSCEEEEEEEEESSCCCCB
T ss_pred CCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeeceeeEEEeeccCCcEEEEEEEEEcCCccCCC
Confidence 334445667888999999 3 55667899999999987654 78999999 4 899988
Q ss_pred Ccc--ccccccccccc
Q psy17146 818 GSE--SVHTRIGVPLA 831 (1011)
Q Consensus 818 ss~--~~~t~~~~P~~ 831 (1011)
|.. ..++.+++|++
T Consensus 101 S~~v~v~~~~~~~Pss 116 (117)
T d1wj3a_ 101 SEQIRIPRITSSGPSS 116 (117)
T ss_dssp CCCEEECCCCCCCSCC
T ss_pred CCCEEEeccCCCCCCC
Confidence 842 23566666653
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.21 E-value=0.00087 Score=55.10 Aligned_cols=69 Identities=16% Similarity=0.370 Sum_probs=41.8
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCC-c-e--eeeceeEEEeeecCCceEE------EEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 148 DREIELECISANGKPPAEITWIDGT-G-T--VMSNVRVTEEASVDGRRTT------VKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~-~-~--l~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
|++++|.|. ........+.|||.. + . ++-.. .......+++... ...+|+|.+++.+|+|.|.|.+..
T Consensus 1 G~~vtl~C~-~~~~~~~~~~Wyrq~~g~~p~~l~~~-~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCT-YSDRGSQSFFWYRQYSGKSPELIMSI-YSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEE-ECCTTCCEEEEEEECTTSCCEEEEEE-CSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEE-EccccCCcEEEEEECCCcccccceee-eeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 789999998 445566689999722 1 1 11100 0000111122111 125899999999999999998875
Q ss_pred C
Q psy17146 218 T 218 (1011)
Q Consensus 218 ~ 218 (1011)
.
T Consensus 79 ~ 79 (94)
T d2gj6d1 79 D 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.20 E-value=0.00051 Score=56.89 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++...|.|.+.+.+|. ..++|++||..+..+.............+...+.|.+ ..++...|+|++.+.....
T Consensus 18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~---~~~~~~~ytC~V~H~sl~~ 90 (98)
T d1d5mb1 18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLET---VPRSGEVYTCQVEHPSVTS 90 (98)
T ss_dssp ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEEC---CCCTTCEEEEEEECTTCSS
T ss_pred CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeE---cCCCCCEEEEEEEECCCCC
Confidence 5567899997777775 5899999998876654333222233335555555554 5677889999999976543
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.20 E-value=0.00058 Score=58.79 Aligned_cols=77 Identities=10% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCeeeecCCCcEEEEEEccCCCCCcEEEEEeCC--ceee---ec----------eeEEEeeecCCceEEEEEEEEEeecc
Q psy17146 140 GDTLYTTEDREIELECISANGKPPAEITWIDGT--GTVM---SN----------VRVTEEASVDGRRTTVKSTLVLTPKK 204 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~--~~l~---~~----------~~~~~~~~~~~~~~~~~~~L~I~~~~ 204 (1011)
+..+.+.+|++|+|.|..........+.|||.. +.+. .. .++........ ....|+|.+++
T Consensus 6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~ 81 (115)
T d1fo0a_ 6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK----SSIGLIITATQ 81 (115)
T ss_dssp CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG----TEEEEEECSCC
T ss_pred CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC----CEEEEEECCCC
Confidence 347788999999999974444555678999732 1111 00 01111111111 12579999999
Q ss_pred CcCCcEEEEEEEeCCC
Q psy17146 205 EHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 205 ~~d~G~Y~C~a~n~~g 220 (1011)
.+|+|.|.|.+....+
T Consensus 82 ~~Dsa~YyCa~~~~~~ 97 (115)
T d1fo0a_ 82 IEDSAVYFCAMRGDYG 97 (115)
T ss_dssp GGGCEEEEEEEECCCT
T ss_pred ccccccccceeecCCC
Confidence 9999999998875433
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=4.4e-05 Score=63.19 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=50.1
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~ 814 (1011)
.+|.++.+..++.+++.|+| ++. +.+.+|+|+|+.... .|+++|.| | .|.
T Consensus 3 ~aP~n~~~~~~s~~si~l~W~~p~---~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 79 (92)
T d1qg3a1 3 GAPQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGE 79 (92)
T ss_dssp CCCEEEEEEECSTTCEEEEEECCS---SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSSCB
T ss_pred CcCCCCEEEEccCCEEEEEEEecC---CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCCcC
Confidence 47889999999999999999 442 468999999986543 89999999 5 888
Q ss_pred CCCC-cccccccc
Q psy17146 815 SETG-SESVHTRI 826 (1011)
Q Consensus 815 g~~s-s~~~~t~~ 826 (1011)
|.+| ...++|++
T Consensus 80 g~~S~~~~~~T~e 92 (92)
T d1qg3a1 80 GPYSSLVSCRTHQ 92 (92)
T ss_dssp CCCCCCEEEECCC
T ss_pred cCCCCCEEEEcCC
Confidence 9888 55566654
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=7e-05 Score=64.71 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=50.9
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCCCC
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHDSE 816 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~g~ 816 (1011)
+|.++.+.. ..+++.|+| ++.+++++|++|.|+++.... .|++.|.| | .|.|+
T Consensus 23 ~P~~~~~~~-~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~ 101 (113)
T d1x5ia1 23 VPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGI 101 (113)
T ss_dssp SCSEEEEEE-ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCC
T ss_pred CCEeeeeee-CCCEEEEEEEccccCCccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEECCCcCCC
Confidence 788887765 457899999 777778899999999987654 88999999 4 89998
Q ss_pred CCcccccccc
Q psy17146 817 TGSESVHTRI 826 (1011)
Q Consensus 817 ~ss~~~~t~~ 826 (1011)
+++..++|..
T Consensus 102 ~~~~~~~T~P 111 (113)
T d1x5ia1 102 PLYESAVTRP 111 (113)
T ss_dssp CCCCCEECCC
T ss_pred CeeeEEEeCC
Confidence 8876666653
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.20 E-value=0.0012 Score=55.18 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=53.1
Q ss_pred cCCceeeecCCcEEEEEEEEecCC-CCeEEEEEC--CeE------ec---------ccCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYR--GEE------IG---------VGSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~--g~~------l~---------~~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
......+++|++++|+|.++|... ...+.|+|. |+. |. ..-.+|+.+..+. ......|.+
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~--s~nt~yL~m 83 (117)
T d1jpth1 6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADN--SKNTAYLQM 83 (117)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEG--GGTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecc--ccceEEecc
Confidence 334556889999999999999865 236888873 221 11 1124566666542 233567999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|++.|.|....
T Consensus 84 ~~L~~eDTAvYYCAr~~ 100 (117)
T d1jpth1 84 NSLRAEDTAVYYCARDT 100 (117)
T ss_dssp CSCCGGGCEEEEEEEEC
T ss_pred cccCCCCceEEEEeecC
Confidence 99999999999996544
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.19 E-value=0.0013 Score=55.06 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=54.2
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
.....+++|++++|+|.+.|.... ..+.|+|. |+.+ .. .-.+|+.+..+. ......|+|.
T Consensus 7 SG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~--s~nt~~L~~~ 84 (118)
T d2fbjh1 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN--AKNSLYLQMS 84 (118)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS--SSCEEEEEEC
T ss_pred ECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC--ccceeecccc
Confidence 344568899999999999998653 25788873 2211 11 123566776542 2334679999
Q ss_pred CCCCCCCEEEEEEEEcCCC
Q psy17146 697 ESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N~~G 715 (1011)
+++.+|++.|.|......+
T Consensus 85 sL~~eDtAvYYCAr~~~~~ 103 (118)
T d2fbjh1 85 KVRSEDTALYYCARLHYYG 103 (118)
T ss_dssp SCCGGGCEEEEEEEEETTT
T ss_pred ccCCCcceEEEeeEecCCC
Confidence 9999999999998765444
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.19 E-value=0.00044 Score=57.16 Aligned_cols=72 Identities=13% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 148 DREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++...|.|.+.+.+| ...++|++||.++..+.............+...+.|.+ ..++...|+|.+.+.....
T Consensus 16 ~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl~~ 88 (97)
T d1uvqb1 16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSLQS 88 (97)
T ss_dssp ---CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTCSS
T ss_pred CCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCCCC
Confidence 566789999777788 47899999998776654433223333335666677776 3566788999999976544
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.19 E-value=0.00039 Score=59.24 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc---ee----------------------ecCCCcEEEeecCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---KV----------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~---~~----------------------~~~~~~L~I~~v~~~ 601 (1011)
+...|..+.+.+|++++|.|.........+.|++.... .. ......|+|.++..+
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 45667788999999999999987766678999985311 00 012367999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 83 Dsa~YyCA~~~ 93 (110)
T d1ac6a_ 83 DSAVYYCALSG 93 (110)
T ss_dssp GCEEEEEEEEE
T ss_pred CCcccceeecC
Confidence 99999998875
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.18 E-value=0.00075 Score=56.53 Aligned_cols=76 Identities=11% Similarity=0.232 Sum_probs=51.7
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------eccc---------CCCCeEEecCCcCccceeEEE
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IGVG---------SSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~~~---------~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+....+++|++++|+|.+.|...- ..+.|+|. |+. |... -.+|+.+..+. ......|.
T Consensus 5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~--s~~t~~L~ 82 (118)
T d2jelh1 5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDK--SSSTAYME 82 (118)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEG--GGTEEEEE
T ss_pred EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEeccc--CcceEeec
Confidence 34455668899999999999998763 25889873 322 1111 12466665431 22346799
Q ss_pred EcCCCCCCCEEEEEEE
Q psy17146 695 IRESRHDHFGVYNCSV 710 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a 710 (1011)
|++++.+|++.|.|..
T Consensus 83 ~~sL~~eDTAvYYCAr 98 (118)
T d2jelh1 83 LARLTSEDSAIYYCAR 98 (118)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ccccccCcceeeeEEE
Confidence 9999999999999943
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.18 E-value=0.00021 Score=59.04 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=43.2
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++|+..+......... .+ .++ ..+.|.|.. +|...|+|.+....
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~-~~---~dgty~~~S~L~v~~---~~~~~ytC~V~H~s 84 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDIL-PN---ANWTWYLRATLDVAD---GEAAGLSCRVKHSS 84 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCE-EC---TTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccE-eC---CCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence 35689999999987 667799999999887532211111 11 123 245666654 34447999998764
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.00021 Score=60.09 Aligned_cols=72 Identities=19% Similarity=0.406 Sum_probs=53.1
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
++.+.|.|.+.+.+|. ..++|++||..+..+..........+..+...+.|.|..........|+|++.+..
T Consensus 20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 92 (102)
T ss_dssp TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 5678999996666774 58999999988766544333333334467778899998877666778999999974
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.17 E-value=0.001 Score=55.57 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=52.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe--------------cccCCCCeEEecCCcCccceeEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI--------------GVGSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l--------------~~~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
.....+++|++++|+|.+.|.... ..+.|+|. |+.+ ...-.+|+.+..+. ......|+|.+
T Consensus 7 SG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~--s~n~~~L~~~s 84 (117)
T d1c5db1 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT--SKSQVFLKMNS 84 (117)
T ss_dssp ECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEET--TTTEEEEEECS
T ss_pred ECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccc--ccceeeccccc
Confidence 344568899999999999998763 25889873 2221 11123577776542 22346899999
Q ss_pred CCCCCCEEEEEEEE
Q psy17146 698 SRHDHFGVYNCSVS 711 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~ 711 (1011)
+..+|++.|.|...
T Consensus 85 L~~eDtAvYYCAr~ 98 (117)
T d1c5db1 85 LQTEDTAIYFCTRE 98 (117)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred cccCcceEEEEecc
Confidence 99999999999654
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.17 E-value=0.00077 Score=57.59 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=47.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeE---ec---------c--cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEE---IG---------V--GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~---l~---------~--~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
|....+.+|++++|.|...+ ... .+.||+. |+. +. . ....++..... ......|+|.++
T Consensus 6 P~~~~~~~G~svtl~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~ 80 (112)
T d1kgce1 6 PRYKVAKRGQDVALRCDPIS-GHV-SLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERP---EGSVSTLKIQRT 80 (112)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT---TSSCEEEEESSC
T ss_pred CCeEEECCCCCEEEEEEECC-CCC-EEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECC---cCCEEEEEECCC
Confidence 45567899999999998543 334 7999983 211 10 0 11223333221 233578999999
Q ss_pred CCCCCEEEEEEEE
Q psy17146 699 RHDHFGVYNCSVS 711 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~ 711 (1011)
+.+|+|.|.|.+.
T Consensus 81 ~~~Dsa~YyCa~~ 93 (112)
T d1kgce1 81 QQEDSAVYLCASS 93 (112)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcCCCEEEEEeee
Confidence 9999999999875
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00023 Score=61.20 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=47.2
Q ss_pred eeeecCCcEEEEEEEEec--CCCCeEEEEEC--CeE---eccc----------CCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 638 QFGIPGDTARVECSAFSI--PPPEKVTWSYR--GEE---IGVG----------SSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~--p~p~~v~W~~~--g~~---l~~~----------~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
..+.+|++|+|.|...+. ... .+.|+|. +.. +... ..+++.+..+. ......|+|.+++.
T Consensus 9 ~~v~eG~svtl~C~~~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~Lti~~l~~ 85 (113)
T d1smoa_ 9 YELKEGQTLDVKCDYTLEKFASS-QKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYH--DHGLLRVRMVNLQV 85 (113)
T ss_dssp EECCTTCCEEEEEECCHHHHTTS-CEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEET--TTTEEEEEECSCCG
T ss_pred EEEccCCCEEEEEEeCCCCCCCC-EEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEEC--CCCEEEEEEccCCc
Confidence 457789999999998643 333 6889983 211 1110 11245444321 23346899999999
Q ss_pred CCCEEEEEEEEc
Q psy17146 701 DHFGVYNCSVSN 712 (1011)
Q Consensus 701 ~d~G~Y~C~a~N 712 (1011)
+|+|.|.|.+..
T Consensus 86 ~Dsg~Y~Cav~~ 97 (113)
T d1smoa_ 86 EDSGLYQCVIYQ 97 (113)
T ss_dssp GGCEEEEEEECC
T ss_pred ccCceEEEEEEC
Confidence 999999998743
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=3e-05 Score=67.90 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=55.5
Q ss_pred CCCCCcccccccccccccc-cC--CCCCCCCcCcceeeecCcc---------------------cccccccc---c---C
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KE--SDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---G 812 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~--~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~ 812 (1011)
+|.++.+..++.+++.++| ++ .+.+++|.+|.|+|+.... .|++.|.| | .
T Consensus 14 ~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 93 (119)
T d1x5ha1 14 APQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTIN 93 (119)
T ss_dssp CCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETT
T ss_pred CCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEEcCC
Confidence 7889999999999999999 33 3456799999999987543 89999999 5 7
Q ss_pred CCCCCC-ccccccccccccc
Q psy17146 813 HDSETG-SESVHTRIGVPLA 831 (1011)
Q Consensus 813 G~g~~s-s~~~~t~~~~P~~ 831 (1011)
|.|.+| ...++|.++.|..
T Consensus 94 G~G~~S~~~~~~T~~~~~~~ 113 (119)
T d1x5ha1 94 GTGPATDWLSAETFESDLDE 113 (119)
T ss_dssp EEEEECCCEEEECCSSCCCC
T ss_pred cCCCCCCCEEEEeCCCCCCC
Confidence 888888 5568888776644
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.16 E-value=0.00037 Score=59.78 Aligned_cols=65 Identities=17% Similarity=0.419 Sum_probs=49.1
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e-e---------------------ecCCCcEEEeecCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K-V---------------------VGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~-~---------------------~~~~~~L~I~~v~~~d 602 (1011)
+...|..+.+.+|++++|.|..+.. ...+.|++.... . . ..+..+|+|.+++.+|
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 82 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED 82 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence 4456778899999999999998754 457999985311 1 0 0112479999999999
Q ss_pred CEEEEEEEEe
Q psy17146 603 AGRYYCKASV 612 (1011)
Q Consensus 603 ~G~Y~C~a~n 612 (1011)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (113)
T d1h5ba_ 83 SGTYFCAAEA 92 (113)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEEEecC
Confidence 9999998875
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.16 E-value=0.0014 Score=55.18 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=52.0
Q ss_pred ceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe--------------cccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI--------------GVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l--------------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
...+++|++++|+|.+.|.... ..+.|+|. |+.+ ...-.+|+.+..+. ......|+|.+++
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~--s~~~~~L~i~~L~ 85 (119)
T d1kxvc_ 8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN--AKNTAYLQMDSLK 85 (119)
T ss_dssp CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS--STTEEEEEECSCC
T ss_pred CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEeccc--CCcceecccccCC
Confidence 3468899999999999998653 25789874 2211 11123567776542 2234689999999
Q ss_pred CCCCEEEEEEEEcC
Q psy17146 700 HDHFGVYNCSVSNP 713 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~ 713 (1011)
.+|++.|.|...-.
T Consensus 86 ~eDtA~YYCAr~~~ 99 (119)
T d1kxvc_ 86 PDDTAMYYCKPSLR 99 (119)
T ss_dssp GGGCEEEEEEEEES
T ss_pred cCCcceEeeeeccc
Confidence 99999999976543
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=3.4e-05 Score=65.35 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=50.9
Q ss_pred CCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCC
Q psy17146 761 KPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 761 ~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~ 814 (1011)
|.+|.++++..++.+++.|+| ++. +++|.+|.|+|+.... .|++.|.| | .|.
T Consensus 11 P~~P~~~~~~~~~~~si~l~W~~p~--~~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 88 (102)
T d1x5za1 11 PGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGL 88 (102)
T ss_dssp CCCCEEEEEECSSSSEEEEEEECCS--CCCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSSCE
T ss_pred CcCCCCeEEEEccCCEEEEEEECCC--CCCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcCCCE
Confidence 348889999999999999999 443 3479999999987544 89999999 4 788
Q ss_pred CCCC-cccccccc
Q psy17146 815 SETG-SESVHTRI 826 (1011)
Q Consensus 815 g~~s-s~~~~t~~ 826 (1011)
|.+| ...++|.+
T Consensus 89 g~~S~~v~~~T~e 101 (102)
T d1x5za1 89 GASTAEISARTMQ 101 (102)
T ss_dssp EEECCCEEEECCC
T ss_pred eCCCCCEEEEcCC
Confidence 8777 44566665
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.14 E-value=0.00029 Score=61.90 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCC--CCeEEecCCcCcc---ceeEEEEcCCC
Q psy17146 628 GRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSS--DDYSVLEDPLKEG---IKSTLIIRESR 699 (1011)
Q Consensus 628 ~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~---~~~~L~I~~~~ 699 (1011)
.||.+. .+.......++.++|.|.+.|+ |..+.|+|++||+.+..+.. ...........++ ..+.|.|....
T Consensus 3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~ 82 (127)
T d1ogae2 3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF 82 (127)
T ss_dssp BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence 356554 2333334557889999999986 66678999999998863210 0000000000111 24678887766
Q ss_pred CCCCE-EEEEEEEcCCC
Q psy17146 700 HDHFG-VYNCSVSNPYG 715 (1011)
Q Consensus 700 ~~d~G-~Y~C~a~N~~G 715 (1011)
..+.| .|+|.|.....
T Consensus 83 W~~~g~~ytC~V~H~~l 99 (127)
T d1ogae2 83 WQNPRNHFRCQVQFYGL 99 (127)
T ss_dssp HTCTTCEEEEEEEECCB
T ss_pred hCCCCCEEEEEEEECCC
Confidence 66655 79999987654
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.14 E-value=0.00079 Score=57.74 Aligned_cols=74 Identities=16% Similarity=0.364 Sum_probs=47.7
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc----cC---------CCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV----GS---------SDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~----~~---------~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|....+.+|++|+|.|... .... .+.||+. |+.+.. .. ..++..... ......|+|.+++
T Consensus 6 P~~~~~~~G~svtl~C~~s-~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~ 80 (114)
T d1ogae1 6 PKYLFRKEGQNVTLSCEQN-LNHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE---KKESFPLTVTSAQ 80 (114)
T ss_dssp CSEEEEETTCCEEECCEEC-SCCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS---STTBCCEEECSCC
T ss_pred CCeEEEcCCCCEEEEEEEe-cCCC-cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcc---cCCeEEEEECcCC
Confidence 4456789999999999975 3345 7999983 221110 01 111211111 2335689999999
Q ss_pred CCCCEEEEEEEEcC
Q psy17146 700 HDHFGVYNCSVSNP 713 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~ 713 (1011)
.+|+|.|.|.+...
T Consensus 81 ~~DSa~YyCa~~~~ 94 (114)
T d1ogae1 81 KNPTAFYLCASSSR 94 (114)
T ss_dssp SCCCEEEEEEEESS
T ss_pred cCCceeEEEeeccC
Confidence 99999999977643
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.13 E-value=0.0014 Score=54.71 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=52.3
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------ec---------ccCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IG---------VGSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~---------~~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.++|.... ..+.|++. |+. |. ..-.+|+.+..+. ......|+|
T Consensus 6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~--s~~t~yLq~ 83 (117)
T d1jnhb1 6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADR--SSSIVYLQL 83 (117)
T ss_dssp ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEET--TTTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccC--ccceeeecc
Confidence 3445567899999999999998663 35789872 221 11 1123577776542 223468999
Q ss_pred cCCCCCCCEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSV 710 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a 710 (1011)
.+++.+|++.|.|..
T Consensus 84 ~~L~~eDTAvYYCAr 98 (117)
T d1jnhb1 84 NSLTSEDSAVYSCSR 98 (117)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred cccCCCcceEEEEee
Confidence 999999999999965
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.12 E-value=0.00094 Score=57.90 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=50.0
Q ss_pred ceeeecCCcEEEEEEEEecCC-CCeEEEEEC--CeEec-------------c--cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPP-PEKVTWSYR--GEEIG-------------V--GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~--g~~l~-------------~--~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
...+.+|++++|+|.++|... ...+.|++. |+.+. . ....+|.+..+. ......|+|.++
T Consensus 10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~i~~l 87 (123)
T d1hxmb1 10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--ETSTSTLTIHNV 87 (123)
T ss_dssp EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--TTTEEEEEECSC
T ss_pred eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec--cccceeeccccc
Confidence 456788999999999998652 226899983 21111 0 012456554321 233568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|.+..
T Consensus 88 ~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 88 EKQDIATYYCALWE 101 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccccCcEEEEeeeC
Confidence 99999999998753
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.12 E-value=0.00096 Score=55.79 Aligned_cols=74 Identities=15% Similarity=0.364 Sum_probs=51.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------ecc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IGV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.+.|.... ..+.|+|. |+. |.. .-.+|+.+..+. ......|+|
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~--s~~tvyL~~ 83 (118)
T d1nlbh1 6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLET--SASTAYLQI 83 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEG--GGTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecC--CceeEEeee
Confidence 3444568899999999999987652 25889873 221 111 113566666542 223467999
Q ss_pred cCCCCCCCEEEEEE
Q psy17146 696 RESRHDHFGVYNCS 709 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~ 709 (1011)
.+++.+|++.|.|.
T Consensus 84 ~~L~~eDtAvYYCA 97 (118)
T d1nlbh1 84 NSLKNEDTATYFCA 97 (118)
T ss_dssp CSCCGGGCEEEEEE
T ss_pred eecccCcceEEEEe
Confidence 99999999999994
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.10 E-value=0.0012 Score=55.24 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=51.3
Q ss_pred ecCCceeeecCCcEEEEEEEEecCC-CCeEEEEEC--CeEec---------------ccCCCCeEEecCCcCccceeEEE
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYR--GEEIG---------------VGSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~--g~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+....+++|++++|+|.++|... ...+.|++. |+.+. ..-..|+.+..+. ......|+
T Consensus 5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~--s~~~~~L~ 82 (117)
T d1mfah1 5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT--STTTAYME 82 (117)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET--TTTEEEEE
T ss_pred EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEccc--CccEeEee
Confidence 3455667889999999999998764 225788873 33221 0112355665431 22346799
Q ss_pred EcCCCCCCCEEEEEEE
Q psy17146 695 IRESRHDHFGVYNCSV 710 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a 710 (1011)
|.+++.+|++.|.|..
T Consensus 83 i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 83 LSSLTSEDSAVYYCTR 98 (117)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ecccCCCcceEEEEec
Confidence 9999999999999954
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.10 E-value=0.0017 Score=53.51 Aligned_cols=77 Identities=14% Similarity=0.338 Sum_probs=52.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEec-----------------ccCCCCeEEecCCcCccceeEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEIG-----------------VGSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L 693 (1011)
......+++|++++|+|.++|.... ..+.|++. |+.+. ..-.+|+.+..+. ......|
T Consensus 6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~--s~~t~~L 83 (109)
T d2ck0h1 6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDD--SQSMLYL 83 (109)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEET--TTTEEEE
T ss_pred eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccc--ccceeEe
Confidence 3445568899999999999987652 25888873 22111 1113467776542 2334679
Q ss_pred EEcCCCCCCCEEEEEEEEc
Q psy17146 694 IIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N 712 (1011)
.|++++.+|++.|.|.-.+
T Consensus 84 ~i~sL~~eDTAvYYCAr~~ 102 (109)
T d2ck0h1 84 QMNNLKTEDTGIYYCVRGR 102 (109)
T ss_dssp EECSCCGGGCEEEEEEEEC
T ss_pred cccCCCHhHCEEEEEEEcC
Confidence 9999999999999997543
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.09 E-value=0.001 Score=55.77 Aligned_cols=75 Identities=15% Similarity=0.277 Sum_probs=50.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEec------cc---------CCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEIG------VG---------SSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l~------~~---------~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.++|.... ..+.|++. |+.+. .. -.+|+.+..+. ......|+|
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~--s~~t~~L~i 83 (115)
T d1f3dh1 6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDK--SSSTAFMHL 83 (115)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEET--TTTEEEEEE
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeecc--CceeeEeee
Confidence 3444568899999999999987542 25889873 33221 11 12455565431 123457999
Q ss_pred cCCCCCCCEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSV 710 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a 710 (1011)
.+++.+|++.|.|..
T Consensus 84 ~~l~~eDtAvYYCAr 98 (115)
T d1f3dh1 84 NSLTFEDSAVYYCAN 98 (115)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred eecCcCCcEEEEEec
Confidence 999999999999954
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.00088 Score=56.58 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=47.5
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEe-cCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVL-EDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~-~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.++.++|.|.+.|+ |..+.|+|++||+.+..+ ..... .....++ ..+.|.|..-.......|+|.|......
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~---~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~ 95 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNG---VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 95 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT---EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCC---eEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence 46789999999987 666799999999987631 11100 0001122 3457777776655566899999976544
Q ss_pred e
Q psy17146 717 D 717 (1011)
Q Consensus 717 ~ 717 (1011)
.
T Consensus 96 ~ 96 (107)
T d1mjul2 96 S 96 (107)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.09 E-value=0.00079 Score=56.85 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=55.6
Q ss_pred CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 140 GDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
++..++..+..+.|.|.+.+.+|. ..++|++|+..+..+.........++ .+...+.|.|..... ...|+|.+.+.
T Consensus 16 Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~g-t~~~~S~L~v~~~~w--~~~ytC~V~H~ 92 (107)
T d1hxmb2 16 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTND-TYMKFSWLTVPEKSL--DKEHRCIVRHE 92 (107)
T ss_dssp CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSS-SEEEEEEEEECTGGG--GSCEEEEEEET
T ss_pred CCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCC-eEEEEEEEEEecccC--CCeEEEEEEEC
Confidence 334445667889999997777885 47999999988766544433333333 555667888866543 33699999998
Q ss_pred CCCc
Q psy17146 219 ADRT 222 (1011)
Q Consensus 219 ~g~~ 222 (1011)
....
T Consensus 93 s~~~ 96 (107)
T d1hxmb2 93 NNKN 96 (107)
T ss_dssp TSGG
T ss_pred CCCC
Confidence 6655
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.00063 Score=55.19 Aligned_cols=71 Identities=13% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.++.+.|.|.+.+.+|. ..++|+++|..+..+.............+...+.|.|..- +...|+|.+.+...
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~L 85 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQGL 85 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSSC
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECCC
Confidence 35689999997777774 5899999998886655443223333345666678888643 44579999998754
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=8.7e-05 Score=62.55 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCCCCcccccccccccccc---cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c--
Q psy17146 763 PPGNGIEHHVTADGEKNQC---KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W---~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A-- 811 (1011)
+|.++.+..++.+++.|+| +..+.+.+|++|.|+++.... .|++.|.| |
T Consensus 4 ~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n 83 (101)
T d1x4ya1 4 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFN 83 (101)
T ss_dssp CCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred CCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEEEc
Confidence 7889999999999999999 456677899999999986543 88899999 4
Q ss_pred -CCCCCCC-ccccccc
Q psy17146 812 -GHDSETG-SESVHTR 825 (1011)
Q Consensus 812 -~G~g~~s-s~~~~t~ 825 (1011)
.|.|++| ...++|+
T Consensus 84 ~~G~s~~S~~~~~~T~ 99 (101)
T d1x4ya1 84 EGGESEFSNVMICETK 99 (101)
T ss_dssp TTCCCCCCCCEEEECC
T ss_pred CCCCCCCCCcEEEEcc
Confidence 8899888 4445554
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00087 Score=54.51 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=50.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEE-eeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQW-TKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W-~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+...|+-+.+.+|++++|+|.++.|+..+.. .+++..+.. ....+.. +... -++|.+++..|.|.|.|.
T Consensus 8 ~~~~p~~V~v~eg~~~vIPC~vT~P~~~VtL~~~~~~~~~p-----~g~~v~~--Dpk~---Gf~I~~~~~~~~g~y~C~ 77 (95)
T d1fltx_ 8 YSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIP-----DGKRIIW--DSRK---GFIISNATYKEIGLLTCE 77 (95)
T ss_dssp CCSSCEEEEECTTSCEEECCCBSCTTSCCEEEETTTEEECC-----CSSSEEE--ETTT---EEEESSCCGGGCEEEEEE
T ss_pred CCCCCCEEEEeCCCCEEEEccCCCCCceeEEEeccCCccCC-----CCCEEEE--CCCC---CEEEeCCCcccCeEEEEE
Confidence 3344566889999999999999998876654 445544321 1111111 2222 389999999999999999
Q ss_pred EEeC
Q psy17146 109 VSTG 112 (1011)
Q Consensus 109 ~~~~ 112 (1011)
+..+
T Consensus 78 a~~~ 81 (95)
T d1fltx_ 78 ATVN 81 (95)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9864
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.07 E-value=0.0016 Score=55.00 Aligned_cols=77 Identities=14% Similarity=0.312 Sum_probs=52.5
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEecc------c---------CCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEIGV------G---------SSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l~~------~---------~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.+.|.... ..+.|++. |+.+.. . -.+|+.+..+. ......|+|
T Consensus 6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~--s~n~v~L~i 83 (120)
T d1pg7x1 6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDR--SSTTAYIEL 83 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEE
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeecc--CcceEEccc
Confidence 4445568899999999999987642 25889873 332211 1 12466665432 233467999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|++.|.|....
T Consensus 84 ~~l~~eDtA~YYCAr~~ 100 (120)
T d1pg7x1 84 VRLTSNDSAVYYCARED 100 (120)
T ss_dssp CSCCGGGCEEEEEEEEC
T ss_pred cccCCCcceEEEeeecC
Confidence 99999999999998653
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00074 Score=58.36 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=46.5
Q ss_pred CceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCce----e----------------------ecCCCcEEEeecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDK----V----------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~----~----------------------~~~~~~L~I~~v~~~ 601 (1011)
|..+.+.+|+.++|.|........ .+.|+|..... . ..+...|+|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 556778899999999998654433 58899874221 0 011247999999999
Q ss_pred CCEEEEEEEEe
Q psy17146 602 LAGRYYCKASV 612 (1011)
Q Consensus 602 d~G~Y~C~a~n 612 (1011)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998875
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.06 E-value=0.0019 Score=54.05 Aligned_cols=76 Identities=12% Similarity=0.278 Sum_probs=51.6
Q ss_pred cCCceeeecCCcEEEEEEEEecCC-CCeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
......+++|++++|+|.++|... ...+.|+|. |+.+ .. .-.+|+.+..+. ......|.|
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~--s~~t~yL~i 83 (118)
T d1ct8b1 6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDT--SSSTAYMQF 83 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEG--GGTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecC--ccceEEecc
Confidence 344566889999999999999765 236788873 3221 11 113455555431 234568999
Q ss_pred cCCCCCCCEEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSVS 711 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~ 711 (1011)
.+++.+|++.|.|...
T Consensus 84 ~~L~~eDtAvYYCAr~ 99 (118)
T d1ct8b1 84 SSLTTEDSAIYYCARY 99 (118)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred cccCCCcceEEEEeee
Confidence 9999999999999653
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.05 E-value=0.0015 Score=54.65 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=53.1
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEE
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+....+++|++++|+|.+.|.... ..+.|+|. |+.+ .. .-.+|+.+..+. ......|+
T Consensus 4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~--s~~t~~L~ 81 (117)
T d1um5h1 4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDK--SSNTAYLE 81 (117)
T ss_dssp EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEET--TTTEEEEE
T ss_pred EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEecc--CceeEeec
Confidence 34455678899999999999987653 36889873 3221 11 113566665532 23346799
Q ss_pred EcCCCCCCCEEEEEEEE
Q psy17146 695 IRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~ 711 (1011)
|.+++.+|++.|.|...
T Consensus 82 m~sL~~eDtAvYYCAr~ 98 (117)
T d1um5h1 82 LSSLTSEDSAVYYCARS 98 (117)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ccccCCCcceEEEEeec
Confidence 99999999999999653
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.05 E-value=0.0013 Score=55.76 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=52.8
Q ss_pred CceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------ecc---------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IGV---------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~~---------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
....+++|++++|+|.++|.... ..+.|+|. |+. |.. .-.+|+.+..+. ......|+|.+
T Consensus 7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~--s~~t~yLq~~s 84 (124)
T d1zvya1 7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDK--AKNMAYLRMDS 84 (124)
T ss_dssp CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECS
T ss_pred CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccc--ccceeeceecc
Confidence 34568899999999999988653 26789873 221 111 113567776542 22356899999
Q ss_pred CCCCCCEEEEEEEEcC
Q psy17146 698 SRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~ 713 (1011)
+..+|++.|.|.....
T Consensus 85 L~~eDtAvYYCAr~~~ 100 (124)
T d1zvya1 85 VKSEDTAIYTCGATRK 100 (124)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred ccCCcceEEEEeeccc
Confidence 9999999999977543
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.05 E-value=0.0009 Score=54.92 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 643 GDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 643 G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
++.++|.|.+.|+ |..+.|+|++||..+..+.........+ .++ ..+.|.+.. .+...|+|.+....
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~--~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~ 85 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPD--GNGTYQTWVATRICQ---GEEQRFTCYMEHSG 85 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEEC--SSSCEEEEEEEEEET---TCGGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEEC--CCCcEEEEEEEEEcC---CCCCEEEEEEEECC
Confidence 4678999999997 7777999999999886422111111111 122 234555543 33346999998653
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.04 E-value=0.0015 Score=54.92 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=52.5
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------ecc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IGV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
......+++|++++|+|.+.|.... ..+.|++. |+. |.. .-.+|+.+..+. ......|+|
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~--s~nt~yLqm 83 (119)
T d1rz7h1 6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADT--STDTGYLEL 83 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEET--TTTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEeccc--CceEEEeee
Confidence 3445567899999999999997653 25789873 221 111 123577776542 233467999
Q ss_pred cCCCCCCCEEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSVS 711 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~ 711 (1011)
.+++.+|++.|.|...
T Consensus 84 ~sL~~eDTAvYYCAr~ 99 (119)
T d1rz7h1 84 SSLRSEDTAVYYCAAD 99 (119)
T ss_dssp CSCCGGGCEEEEEEEC
T ss_pred eccCcccceEEEEeec
Confidence 9999999999999654
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.04 E-value=0.003 Score=53.75 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=53.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
.....+++|++++|+|.++|.... ..+.|++. |+.+ .. .-.+|+.+..+. ......|.|.
T Consensus 7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~--s~~t~yL~i~ 84 (135)
T d1ieha_ 7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDN--AKNTLYLQMN 84 (135)
T ss_dssp ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECT--TTCCEEEEEE
T ss_pred ECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccC--CCceeEecEe
Confidence 344568899999999999998652 25889873 2211 11 123567776542 2234689999
Q ss_pred CCCCCCCEEEEEEEEcC
Q psy17146 697 ESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N~ 713 (1011)
+++.+|++.|.|.....
T Consensus 85 ~L~~eDTAvYYCAr~~~ 101 (135)
T d1ieha_ 85 SLKSEDTAVYYCAKYSG 101 (135)
T ss_dssp SCCSSSCEEEEEEEBSS
T ss_pred eeCcccceeeEEEEecC
Confidence 99999999999976543
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.00049 Score=57.50 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
..+.+.|.|.+.+.+| ...++|++++..+....... .....+..+...+.|.|..-.......|+|++.+...
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~-~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l 90 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQ-PIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 90 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECC-CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEee-eecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence 3567899999666677 46899999988765433222 2233344677788999987776778889999998743
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.02 E-value=0.0015 Score=54.27 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=50.3
Q ss_pred CceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE------ecc---------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE------IGV---------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~------l~~---------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
....+++|++++|+|.+.|.... ..+.|++. |+. |.. .-.+|+.+..+. ......|+|.+
T Consensus 8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~--s~nt~~L~~~~ 85 (114)
T d1indh1 8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDN--AQNNLYLQLNS 85 (114)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEET--TTTEEEEEECS
T ss_pred CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccC--ccceeeeeeee
Confidence 34568899999999999988652 25789873 221 111 113466776532 22346799999
Q ss_pred CCCCCCEEEEEEE
Q psy17146 698 SRHDHFGVYNCSV 710 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a 710 (1011)
+..+|++.|.|..
T Consensus 86 L~~eDtAvYYCA~ 98 (114)
T d1indh1 86 LRSEDTALYFCAS 98 (114)
T ss_dssp CCGGGCEEEEEEC
T ss_pred eccCcccEEEECC
Confidence 9999999999953
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.02 E-value=0.001 Score=56.86 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=49.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc-------------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV-------------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~-------------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|....+.+|++++|.|..... .. .+.||+. |+.+.. ....++..... ......|+|.+++
T Consensus 8 P~~~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~ 82 (113)
T d1nfdb1 8 PRHIIKEKGGRSVLTCIPISG-HS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF---DDYHSEMNMSALE 82 (113)
T ss_dssp CSEEEEETTCCCEEEEECCTT-CC-EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEEC---TTSCEEEECCSCC
T ss_pred CCEEEEeCCCCEEEEEEeCCC-CC-EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcC---CCCeEEEEecccC
Confidence 556678999999999986432 34 7999984 211110 01223332221 2335689999999
Q ss_pred CCCCEEEEEEEEcCCC
Q psy17146 700 HDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G 715 (1011)
.+|+|.|.|.+....+
T Consensus 83 ~~Dsa~YyCa~~~~~~ 98 (113)
T d1nfdb1 83 LEDSAMYFCASSLRWG 98 (113)
T ss_dssp GGGCEEECEEEESSSC
T ss_pred cCCceeEEEEeecCCC
Confidence 9999999998764433
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.02 E-value=0.0014 Score=54.49 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=52.5
Q ss_pred ecCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEE
Q psy17146 633 ISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 633 ~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+....+++|++++|+|.+.|.... ..+.|+|. |+.+ .. .-.+|+.+..+. ......|.
T Consensus 5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~--s~~tvyL~ 82 (116)
T d1mjuh1 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT--SSSTAYMQ 82 (116)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEE
T ss_pred eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccc--ccceeEec
Confidence 34556678999999999999997653 25789872 2211 11 112466775432 23356899
Q ss_pred EcCCCCCCCEEEEEEE
Q psy17146 695 IRESRHDHFGVYNCSV 710 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a 710 (1011)
|.+++.+|++.|.|..
T Consensus 83 ~~sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 83 LSSLTSDDSAVYYCAN 98 (116)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ccccCCCCceEEEEcc
Confidence 9999999999999954
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.02 E-value=0.002 Score=54.29 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=52.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
+....+++|++++|+|.++|.... ..+.|++. |+.+ .. .-.+|+.+..+. ......|.|.
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~--s~ntvyL~~~ 85 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDT--SATTAYMGLS 85 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccC--Ccceeeeccc
Confidence 455678999999999999998652 25889873 2211 11 113566676542 2234579999
Q ss_pred CCCCCCCEEEEEEEEc
Q psy17146 697 ESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N 712 (1011)
+++.+|++.|.|....
T Consensus 86 ~L~~eDtA~YYCAr~~ 101 (122)
T d1vgeh1 86 SLRPEDTAVYYCARDP 101 (122)
T ss_dssp SCCGGGCEEEEEEEET
T ss_pred ccCCCcceEEEEeecC
Confidence 9999999999997653
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0028 Score=51.66 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=43.9
Q ss_pred EecCcEEEEEEEcC--C-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 40 VVGSRVTLPCRVID--K-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 40 ~~G~~v~L~C~v~~--~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
..++.++|.|.+.+ | ...|.|++||..+.... ... .....+.+..-.......+..+|...|+|++.+..
T Consensus 13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~-~~~---~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKE-FEP---KDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG 85 (94)
T ss_dssp ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGG-SCC---CEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCc-ccc---cceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 35788999999998 3 33899999998874322 111 11222222222233444566677789999999853
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00011 Score=63.06 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=49.0
Q ss_pred CCCCCccc--ccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c--
Q psy17146 763 PPGNGIEH--HVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 763 ~p~~~~~~--~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A-- 811 (1011)
||.++.+. ..+..++.|+| ++.+.+++|.+|.|.++.... .|+++|.| |
T Consensus 14 pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 93 (111)
T d1x5ka1 14 PPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 93 (111)
T ss_dssp CCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEEC
T ss_pred CCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEEEc
Confidence 67776654 45677899999 777778899999999876433 88899999 5
Q ss_pred -CCCCCCC-cccccccc
Q psy17146 812 -GHDSETG-SESVHTRI 826 (1011)
Q Consensus 812 -~G~g~~s-s~~~~t~~ 826 (1011)
.|.|++| ...++|.+
T Consensus 94 ~~G~g~~S~~v~~~T~~ 110 (111)
T d1x5ka1 94 SKGMGPMSEAVQFRTPK 110 (111)
T ss_dssp SSCBCCCCCCEEEECCC
T ss_pred CCCCcCCCCCEEEECCC
Confidence 8899888 44555654
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.02 E-value=0.00075 Score=57.16 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=50.0
Q ss_pred CceeeecCCcEEEEEEEEecCC-CCeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPP-PEKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
....+++|++++|+|.+.|... ...+.|++. |+.+ .. .-.+|+.+..+. ......|+|.+
T Consensus 8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~--s~~~~~L~i~~ 85 (119)
T d1qnzh_ 8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEK--SSSTVYLEFSR 85 (119)
T ss_dssp CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEET--TTTEEEEEEEE
T ss_pred CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeeccc--ccceeeeeecc
Confidence 3446889999999999998754 225889873 3221 11 112466665431 22346799999
Q ss_pred CCCCCCEEEEEEEE
Q psy17146 698 SRHDHFGVYNCSVS 711 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~ 711 (1011)
++.+|++.|.|...
T Consensus 86 L~~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 86 LTSDDSAVYYCAIH 99 (119)
T ss_dssp ECGGGCEEEEEEEC
T ss_pred cCccceeEEEEEEe
Confidence 99999999999653
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.01 E-value=0.0016 Score=55.53 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc-------------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV-------------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~-------------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|....+.+|++++|.|..... .. .+.||+. |+.+.. ....++..... ......|.|.++.
T Consensus 6 P~~~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~ 80 (112)
T d2bnub1 6 PKFQVLKTGQSMTLQCAQDMN-HE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRS---TTEDFPLRLLSAA 80 (112)
T ss_dssp CSEEEEETTCCEEEEEEESSC-CS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCS---SSSBCCEEESSCC
T ss_pred CCeEEECCCCCEEEEEEEECC-cc-ceEecccccccCccceeeEeccCceecCccccceeEecC---CCCEEEEEECCCC
Confidence 445678999999999987543 34 7999982 221111 01122222211 2234689999999
Q ss_pred CCCCEEEEEEEEc
Q psy17146 700 HDHFGVYNCSVSN 712 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N 712 (1011)
.+|+|.|.|.+..
T Consensus 81 ~~DsavYyCA~~~ 93 (112)
T d2bnub1 81 PSQTSVYFCASSY 93 (112)
T ss_dssp GGGCEEEEEEEEC
T ss_pred HHHCEEEEEeecC
Confidence 9999999998764
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.01 E-value=0.0019 Score=53.93 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=51.6
Q ss_pred CCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------c--------ccCCCCeEEecCCcCccceeEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------G--------VGSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~--------~~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
.....+++|++++|+|.++|.... ..+.|++. |+.+ . ..-.+|+.+..+. ......|+|++
T Consensus 7 sG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~--s~n~~~L~~~~ 84 (116)
T d1a2yb_ 7 SGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDN--SKSQVFLKMNS 84 (116)
T ss_dssp ECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEG--GGTEEEEEECS
T ss_pred ECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccC--CCceEEcceee
Confidence 344568899999999999998663 25789873 2221 1 1112355565431 22346799999
Q ss_pred CCCCCCEEEEEEEEc
Q psy17146 698 SRHDHFGVYNCSVSN 712 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N 712 (1011)
++.+|++.|.|.-..
T Consensus 85 l~~eDTAvYYCAr~~ 99 (116)
T d1a2yb_ 85 LHTDDTARYYCARER 99 (116)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred eeeccceEEEEEEeC
Confidence 999999999997654
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.01 E-value=0.001 Score=57.39 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=47.4
Q ss_pred ceeeecCCcEEEEEEEEecCC--CCeEEEEEC--Ce---Eecc-----------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPP--PEKVTWSYR--GE---EIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~--g~---~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.....+|++++|.|.+.+... . .+.|++. |+ .|.. ....++.+..+ .......|+|.++
T Consensus 10 sv~~~~G~svtL~C~~~~~~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~--~~~~~~~L~I~~l 86 (120)
T d1ypzf1 10 SISRPRDETAQISCKVFIESFRSV-TIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN--PSASTSILTIYSL 86 (120)
T ss_dssp EEEEETTSCEEEEEEECCGGGGGC-CEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC--CTTTEEEEEECSC
T ss_pred EEEecCCCcEEEEEEEecccccCC-cccEEEeCCcccccccccccccccceeeeccccccccccc--ccccccccccccc
Confidence 455778999999999876542 3 5899983 21 1110 01123333321 1234578999999
Q ss_pred CCCCCEEEEEEEE
Q psy17146 699 RHDHFGVYNCSVS 711 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~ 711 (1011)
+.+|+|.|.|.+.
T Consensus 87 ~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 87 EEEDEAIYYCSYG 99 (120)
T ss_dssp CGGGCSEEEEEEC
T ss_pred ccccceeEEEEEc
Confidence 9999999999764
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.00 E-value=0.0001 Score=62.22 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
.++.++|.|.+.|. |..+.|.|++||+.+....... .... .++. .+.|.|...+..+...|+|.|.+.....
T Consensus 19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~-~~~~---~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~ 94 (104)
T d1nfde2 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT-KPSK---QGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV 94 (104)
T ss_dssp HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC-CCBC---SSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEec-cccC---CCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence 46778999999985 6666999999999987422111 1111 1222 3556665555455568999999886554
Q ss_pred EE
Q psy17146 718 SV 719 (1011)
Q Consensus 718 ~~ 719 (1011)
++
T Consensus 95 ~k 96 (104)
T d1nfde2 95 EK 96 (104)
T ss_dssp CC
T ss_pred EE
Confidence 33
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00091 Score=56.08 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=55.5
Q ss_pred ecCCCcEEEEEEccCCCCC---cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 145 TTEDREIELECISANGKPP---AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~P~---~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..++.++|.|.+.+.+|. .++.|+++++............. .+..+...+.|.|..-.......|+|++.+....
T Consensus 13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~-~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~ 91 (103)
T d1fp5a1 13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQ-RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP 91 (103)
T ss_dssp HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEE-TTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCS
T ss_pred HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEEC-CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 4457788999996666775 57889999887765433333333 4456777889999877777788999999997654
Q ss_pred c
Q psy17146 222 T 222 (1011)
Q Consensus 222 ~ 222 (1011)
.
T Consensus 92 ~ 92 (103)
T d1fp5a1 92 R 92 (103)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.00 E-value=0.0019 Score=54.68 Aligned_cols=77 Identities=17% Similarity=0.359 Sum_probs=52.3
Q ss_pred CceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
....+++|++++|+|.++|.... ..+.|++. |+.+ .. .-.+|+.+..+. ......|+|.+
T Consensus 8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~--s~nt~~L~~~~ 85 (126)
T d1dfbh1 8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDN--AKNSLYLQMNS 85 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEET--TTTEEEEEECS
T ss_pred CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccC--CCcEEEeeeee
Confidence 34568899999999999987652 25789873 2221 11 113466666532 23346799999
Q ss_pred CCCCCCEEEEEEEEcCC
Q psy17146 698 SRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~~ 714 (1011)
++.+|++.|.|......
T Consensus 86 L~~eDtavYYCAr~~~~ 102 (126)
T d1dfbh1 86 LRAEDMALYYCVKGRDY 102 (126)
T ss_dssp CCGGGCEEEEEEEEECC
T ss_pred eccCcceEEEEEeccCc
Confidence 99999999999765433
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=9.3e-05 Score=63.39 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCC-CCCCCcccccccccccccc-c--CCCCCCCCcCcceeeecCcc-------------------------cccccccc
Q psy17146 760 KKP-PPGNGIEHHVTADGEKNQC-K--ESDNSSNISDIKLEFRTGSS-------------------------VSNVHLDY 810 (1011)
Q Consensus 760 ~~~-~p~~~~~~~~~~~s~~~~W-~--~~d~~s~I~~Y~ve~~~~~~-------------------------~p~~~Y~f 810 (1011)
.|. ||.++.+..++.+++.++| + ..+.+++|.+|.|+++.... .|++.|.|
T Consensus 7 ~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 86 (109)
T d1va9a1 7 APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGV 86 (109)
T ss_dssp CCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEE
T ss_pred CCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEE
Confidence 344 8889999999999999999 3 34456799999999886532 88899999
Q ss_pred ---c---CCCCCCC-cccccccc
Q psy17146 811 ---A---GHDSETG-SESVHTRI 826 (1011)
Q Consensus 811 ---A---~G~g~~s-s~~~~t~~ 826 (1011)
| .|.|++| ...++|+|
T Consensus 87 ~V~a~n~~G~g~~S~~v~~~T~e 109 (109)
T d1va9a1 87 VVQAFNRAGTGPSSSEINATTLE 109 (109)
T ss_dssp EEEEEETTEECCCCCCEECCCCS
T ss_pred EEEEEcCCcCCCCCCCEEEEcCC
Confidence 4 8888888 44566653
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=6.6e-05 Score=61.92 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GHD 814 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G~ 814 (1011)
|||.++++.+++.+++.++|.+.+ ++++++|.|+|+.... .|+++|.| | .|.
T Consensus 2 PpP~~l~~~~~~~~sv~l~W~~p~-~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~ 80 (91)
T d1fnfa2 2 PPPTDLRFTNIGPDTMRVTWAPPP-SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE 80 (91)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCT-TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred ccCCceEEEEeCCCEEEEEEEecC-CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCCC
Confidence 578999999999999999993333 4689999999986544 88999999 4 666
Q ss_pred CCCCcccccc
Q psy17146 815 SETGSESVHT 824 (1011)
Q Consensus 815 g~~ss~~~~t 824 (1011)
|+|.+...+|
T Consensus 81 S~p~~~~~~T 90 (91)
T d1fnfa2 81 STPLRGRQKT 90 (91)
T ss_dssp CCCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 7665544433
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=96.99 E-value=0.0019 Score=54.56 Aligned_cols=76 Identities=13% Similarity=0.281 Sum_probs=52.0
Q ss_pred CceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------c---------ccCCCCeEEecCCcCccceeEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------G---------VGSSDDYSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~---------~~~~~~~~~~~~~~~~~~~~~L~I~~ 697 (1011)
....+++|++++|+|.+.|.... ..+.|++. |+.+ . ..-.+|+.+..+. ......|+|.+
T Consensus 8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~--s~~t~yL~m~s 85 (122)
T d1bz7b1 8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDN--PKNTLFLQMTS 85 (122)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEG--GGTEEEEEECS
T ss_pred CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccC--CccEeEeeeee
Confidence 34457889999999999998652 25789873 2211 1 1123567776542 12346899999
Q ss_pred CCCCCCEEEEEEEEcC
Q psy17146 698 SRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~ 713 (1011)
++.+|++.|.|...+.
T Consensus 86 L~~eDTAvYYCAr~~~ 101 (122)
T d1bz7b1 86 LRSEDTAIYYCTRGGT 101 (122)
T ss_dssp CCGGGCEEEEEEEECC
T ss_pred ecccCceEEEeecCCC
Confidence 9999999999976543
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.98 E-value=0.0017 Score=55.19 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=53.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeE---------------ecccCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEE---------------IGVGSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~---------------l~~~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
......+++|++++|+|.++|.... ..+.|++. |+. ....-.+|+.+..+.. .....|+|
T Consensus 6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s--~~t~yL~~ 83 (128)
T d2nxyd1 6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKS--TSTVYLEL 83 (128)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT--TTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCC--CceEEeee
Confidence 3445568899999999999998764 24688762 111 1112246777776422 33568999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|++.|.|....
T Consensus 84 ~sL~~eDTA~YYCAr~~ 100 (128)
T d2nxyd1 84 RNLRSDDTAVYFCAGVY 100 (128)
T ss_dssp CSCCGGGCEEEEEEEEE
T ss_pred eeccccCceEEEEeEEe
Confidence 99999999999998654
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=0.00091 Score=56.46 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=50.6
Q ss_pred ceeeecCCcEEEEEEEEecC--CCCeEEEEEC--Ce----EecccC---------CCCeEEecCCcCccceeEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIP--PPEKVTWSYR--GE----EIGVGS---------SDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~--g~----~l~~~~---------~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
...+.+|++++|+|...+.. .- .+.|+|. |+ .+.... .+|+.+..+. ......|+|.+++
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~-~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~--~~~~~~lti~~L~ 80 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANS-QKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDP--SEAMLQVQMTDLQ 80 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTS-EEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEG--GGTEEEEEECSCC
T ss_pred CCcCCCCCCEEEEEEECCCCccCC-cEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEEC--CCCEEEEEECccc
Confidence 34688999999999988653 33 6889983 32 111110 2355555421 2345689999999
Q ss_pred CCCCEEEEEEEEcCC
Q psy17146 700 HDHFGVYNCSVSNPY 714 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~ 714 (1011)
.+|+|.|.|...+.-
T Consensus 81 ~eDsa~YyCa~~~~~ 95 (110)
T d1u9ka_ 81 VTDSGLYRCVIYHPP 95 (110)
T ss_dssp GGGCEEEEEEEECTT
T ss_pred cCCCEEEEEEEeCCC
Confidence 999999999875443
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=96.97 E-value=5.6e-05 Score=62.75 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=49.7
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..|.+|++|+|+|.... ... .+.|+|. |+.+.. ....++.+..+ .......|+|.+++.+|+|.
T Consensus 3 lsV~eG~~vtL~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~Dsa~ 78 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKT-SIN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLD--TSKKSSSLLITASRAADTAS 78 (96)
T ss_dssp CCCSSCCCCCBCCBCSS-CEE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCB--GGGTBCCBCCSSCCSTTCSC
T ss_pred ceECCCCCEEEEEEEeC-Ccc-cEEEEEECCCCCccccccccceecccccccceeecc--CcceecccCcCCCCcccCEE
Confidence 46889999999998754 334 7999983 322110 12233433221 12234689999999999999
Q ss_pred EEEEEEcCCCC
Q psy17146 706 YNCSVSNPYGS 716 (1011)
Q Consensus 706 Y~C~a~N~~G~ 716 (1011)
|.|.+....|.
T Consensus 79 YyCA~~~~~g~ 89 (96)
T d1ymmd1 79 YFCATDTTSGT 89 (96)
T ss_dssp CEEEEEETTSC
T ss_pred EeEeEecCCCC
Confidence 99998766554
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0012 Score=55.63 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=54.5
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++.+.|.|.+.+.+|. ..|+|++|+..+..+....... ...+..+...+.|.|..........|+|++.+.....
T Consensus 20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~ 96 (107)
T d1c5cl2 20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 96 (107)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence 5679999997777785 5899999988776544333222 2223467778899998877677779999999976544
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=96.96 E-value=0.00037 Score=58.48 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=46.0
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++||...............+ ......+.|.|..-.......|+|.|....
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~d-gtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSD-GSYFMYSKLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTT-SCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCC-CcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 47789999999986 7777999999998754321111111111 001135677776655444557999998764
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.95 E-value=0.002 Score=54.61 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=51.9
Q ss_pred cCCceeeecCCcEEEEEEEEecCCC-CeEEEEEC--CeEe------cc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYR--GEEI------GV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~--g~~l------~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.+....+++|++++|+|.+.|.... ..+.|++. |+.+ .. .-.+|+.+..+. ......|.|
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~--s~nt~yL~~ 83 (127)
T d1n0xh1 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT--SANTAYMEL 83 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEG--GGTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEeccc--CceEEEEEE
Confidence 4455678899999999999997652 25789873 3221 11 123466666532 123467999
Q ss_pred cCCCCCCCEEEEEEE
Q psy17146 696 RESRHDHFGVYNCSV 710 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a 710 (1011)
.+++.+|++.|.|.-
T Consensus 84 ~~L~~eDtAvYYCAR 98 (127)
T d1n0xh1 84 RSLRSADTAVYYCAR 98 (127)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred EccCCCCceEEEEEe
Confidence 999999999999963
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=96.95 E-value=0.00053 Score=57.97 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=51.6
Q ss_pred CCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|.+. .+.......+..++|.|.+.|+ |..+.|+|++||..+.......-....+ ......+.|+|......+ .
T Consensus 8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~-gt~~~~S~L~v~~~~w~~--~ 84 (107)
T d1hxmb2 8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTN-DTYMKFSWLTVPEKSLDK--E 84 (107)
T ss_dssp SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECS-SSEEEEEEEEECTGGGGS--C
T ss_pred CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCC-CeEEEEEEEEEecccCCC--e
Confidence 45544 3444446677899999999986 6667899999998776321111111110 011124567776654432 6
Q ss_pred EEEEEEcCCCC
Q psy17146 706 YNCSVSNPYGS 716 (1011)
Q Consensus 706 Y~C~a~N~~G~ 716 (1011)
|+|.|......
T Consensus 85 ytC~V~H~s~~ 95 (107)
T d1hxmb2 85 HRCIVRHENNK 95 (107)
T ss_dssp EEEEEEETTSG
T ss_pred EEEEEEECCCC
Confidence 99999986553
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=96.95 E-value=0.0023 Score=53.72 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCC--CeEEEEEC--CeEecc--------------cCCCCeEEecCCcCccceeEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPP--EKVTWSYR--GEEIGV--------------GSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~--g~~l~~--------------~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
+....+++|++++|+|.+.|.... ..+.|+|. |+.+.. .-.+|+.+..+. ......|.|.
T Consensus 7 sG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~--s~nt~~L~~~ 84 (119)
T d1ncwh1 7 SGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDT--SKNQFFLQLN 84 (119)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred ECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccc--ccceeecccc
Confidence 344568899999999999998763 24688872 332211 113466666532 2234679999
Q ss_pred CCCCCCCEEEEEEEE
Q psy17146 697 ESRHDHFGVYNCSVS 711 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~ 711 (1011)
+++.+|++.|.|...
T Consensus 85 sL~~eDTAvYYCAr~ 99 (119)
T d1ncwh1 85 SVTTEDTATYYCAGL 99 (119)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccccCCceEEEEeEe
Confidence 999999999999643
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.94 E-value=0.0022 Score=53.28 Aligned_cols=72 Identities=28% Similarity=0.374 Sum_probs=50.6
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..|+..+|.|.+.+.+|. ..++|++|+..+..... ......+...+...+.|.|.. +|...|+|++.+....
T Consensus 16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~-~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~ 88 (103)
T d1hdma1 16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGP-TFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDR 88 (103)
T ss_dssp CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCC-EEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTT
T ss_pred hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEe-ceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCC
Confidence 457888999997777884 68999999887644332 223333444677778888855 4456799999998543
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0008 Score=56.33 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.++.+.|.|.+.+.+|. ..++|++|+.......... .....+..+...+.|.|..-.......|+|++.+....
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~-~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~ 92 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP-PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 92 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC-CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcc-eEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence 36789999997666774 6899999988754432222 22333446777789999887767777899999997543
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0013 Score=55.42 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=47.7
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
.++.++|.|.+.|. |..+.|+|++||..+... ...........++ ..+.|.|..-.......|+|.|.......
T Consensus 19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~--~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~ 96 (107)
T d1c5cl2 19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGN--SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 96 (107)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS--EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred cCCceEEEEEEEEeeCCCCEEEEEECCEECCCC--EEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence 46789999999987 666799999999877531 1111000111122 34678887665555558999999876543
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.005 Score=46.42 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=44.1
Q ss_pred eecCCcEEEEEEEEecCCCC-eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 640 GIPGDTARVECSAFSIPPPE-KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~p~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
...|..+.|+|.....+.++ --.|+|+|+.|...... ....++.|.. .+++|+|.|+..+
T Consensus 9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----------~~~tey~V~~--~D~SGeY~CVFl~ 69 (80)
T d3b5ha2 9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----------GQKTEFKVDS--DDQWGEYSCVFLP 69 (80)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----------CSEEEEEECG--GGCCEEEEEEEES
T ss_pred ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----------CCceEEEEec--CCCCceEEEEEcC
Confidence 34678899999998766543 46899999999853221 2245777775 7799999999753
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=8e-05 Score=61.23 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=47.0
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---C
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---G 812 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~ 812 (1011)
|.+||.++.+.+++.+++.++|.+. .+++.+|.|+++.... .|+++|.| | .
T Consensus 1 ~ld~P~~l~v~~~s~~s~~l~W~~p--~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 78 (90)
T d1tena_ 1 RLDAPSQIEVKDVTDTTALITWFKP--LAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD 78 (90)
T ss_dssp -CCCCEEEEEESCCSSCEEEEEECC--SSCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCCCCcEEEEecCCEEEEEEEeC--ceEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeCC
Confidence 3468999999999999999999332 2579999999986543 89999999 5 6
Q ss_pred CCCCCCcccc
Q psy17146 813 HDSETGSESV 822 (1011)
Q Consensus 813 G~g~~ss~~~ 822 (1011)
|.|.|++..+
T Consensus 79 g~s~~~~~~~ 88 (90)
T d1tena_ 79 MSSNPAKETF 88 (90)
T ss_dssp EECCCEEEEE
T ss_pred CEeCCEEEEE
Confidence 6676664443
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=9.5e-05 Score=62.44 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCCCC
Q psy17146 762 PPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHDSE 816 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~g~ 816 (1011)
.+|.++.+.+++.+++.++|...+ ++|.+|.|+++.... .|+++|.| | .|.|+
T Consensus 2 ~~P~~l~~~~~t~~si~l~W~~p~--~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~s~ 79 (102)
T d2cuha1 2 DGPTQLRALNLTEGFAVLHWKPPQ--NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTS 79 (102)
T ss_dssp SSCEEEECCCCSSSCEEEEEECCS--SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTEECC
T ss_pred cCCCccEEEEeCCCEEEEEEEeee--ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCCCCcC
Confidence 378899999999999999993332 479999999987544 89999999 4 67777
Q ss_pred CCcccccccccccccccccCCc
Q psy17146 817 TGSESVHTRIGVPLAGPVPMDQ 838 (1011)
Q Consensus 817 ~ss~~~~t~~~~P~~~P~~~~~ 838 (1011)
+++..++|..+ +|.++..
T Consensus 80 ~~~~~~~T~~~----~P~~l~~ 97 (102)
T d2cuha1 80 PASITFTTGLE----APRDLEA 97 (102)
T ss_dssp CEEEEEESCCC----CTTTSSS
T ss_pred CEEEEEECCCC----CCCCCEe
Confidence 77666777544 4555543
|