Psyllid ID: psy1714

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MAASSSTSSSSSVVPSTSKMSEDSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
cccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccEEEEEHHHHHHHHHHHccccccEEEEccccEEEcccEEEEEcccccccccccEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
cccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHcccccccccHHHHEHHHHHHHHHHHHHHHccccEEEHHHEcccccccEEEEEEEEEcccccccEEEccHHHHHHHHHHHHHHHHHcccHcccccccccccccEEEHHHHHHHHHHHHHHccccEEEEEHEcccccccEEEEEEEEEcccccccEEEccHHHHHHHHHHHHHHHHHcccccHEEEEEcccccccEEEcccEccHHHHHHHccccEEEEEEcccEEEEccEEEEEEEEEcccccccccccccccEEcccccccccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
maassstsssssvvpstskmsedsQIAQKTWIMennietlsaTDEIFKYDRKRQQDMiaakpwekdphfFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDafalpvegteTRVNAQAQAYEYMTAYIEAAKEvrhqevipltliphfFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDafalpvegteTRVNAQAQAYEYMTAYIEAAKEVGRLENAIGwyhshpgygcwlsgIDVSTQMLNQnfqepfvaividpvrtisagkvclgsfrtypkgykpaneepseyqtiplnkiedfgvhckqyYSLDVSYFKSSLDRRLLDSLWNKYWVntlsssslltnadyltgqmcdlsDKLEQAESALVRNFLisesqerrpetkLMKATKDCCKTTIECIHGLMAQMIKQQLFNHnmkhvetedsvma
maassstsssssvvpstskmsedSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIaakpwekdphfFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKgykpaneepseyQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRnflisesqerrpetklmkatKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVetedsvma
MAAssstsssssvvpstsKMSEDSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKssldrrlldslWNKYWVNTlssssllTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
****************************KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK********YQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLI*************KATKDCCKTTIECIHGLMAQMIKQQLFNH*************
***********************************NIETLSATDEIFK********************FFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEG**********AYEY************************FFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKG*******************EDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVN************YLTGQMCDLS************************************KTTIECIHGLMAQMIKQQLFN**************
*************************IAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
*************************IAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALV***********RPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNH*************
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MAASSSTSSSSSVVPSTSKMSEDSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q9XZ58327 COP9 signalosome complex yes N/A 0.625 0.859 0.802 1e-140
Q92905334 COP9 signalosome complex yes N/A 0.648 0.871 0.770 1e-128
O35864334 COP9 signalosome complex yes N/A 0.648 0.871 0.770 1e-128
Q6PC30334 COP9 signalosome complex yes N/A 0.648 0.871 0.766 1e-128
Q6P635334 COP9 signalosome complex yes N/A 0.648 0.871 0.763 1e-128
Q6GLM9332 COP9 signalosome complex N/A N/A 0.648 0.876 0.763 1e-127
Q54PF3332 COP9 signalosome complex yes N/A 0.625 0.846 0.667 1e-118
Q9FVU9358 COP9 signalosome complex yes N/A 0.663 0.832 0.666 1e-115
Q8LAZ7357 COP9 signalosome complex no N/A 0.694 0.873 0.621 1e-112
P91001368 COP9 signalosome complex yes N/A 0.632 0.771 0.608 1e-103
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1 Back     alignment and function desciption
 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 228/284 (80%), Positives = 257/284 (90%), Gaps = 3/284 (1%)

Query: 152 PLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGT 211
           P    PHFFKDIKISALALLKMVMHARSGGTLEVMGL+LGK++ N+MIVMDAFALPVEGT
Sbjct: 41  PWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGT 100

Query: 212 ETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQE 271
           ETRVNAQAQAYEYMTAY+EAAKEVGR+E+A+GWYHSHPGYGCWLSGIDVSTQMLNQ +QE
Sbjct: 101 ETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQE 160

Query: 272 PFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYS 331
           PFVAIV+DPVRT+SAGKVCLG+FRTYPKGYKP NEEPSEYQTIPLNKIEDFGVHCKQYY 
Sbjct: 161 PFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIPLNKIEDFGVHCKQYYP 220

Query: 332 LDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRN 391
           L++SYFKS+LDRRLLDSLWNKYWVNTL SS LLTN +Y TGQ+ DLS+KLEQ+E+ L R 
Sbjct: 221 LEISYFKSALDRRLLDSLWNKYWVNTLGSSGLLTNTEYTTGQIMDLSEKLEQSENFLGRG 280

Query: 392 FLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFN 435
              ++  E+R E KL KAT+DC ++TIE IHGLMAQ++K +LFN
Sbjct: 281 ---TDVNEKRSEDKLSKATRDCSRSTIELIHGLMAQIVKDKLFN 321
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex. The CSN complex plays an essential role in oogenesis and embryogenesis and is required for proper photoreceptor R cell differentiation and promote lamina glial cell migration or axon targeting. It also promotes Ubl-dependent degradation of cyclin E (CycE) during early oogenesis. Also involved in regulation of axis formation by checkpoint-dependent, translational control of Gurken.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4 Back     alignment and function description
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3 Back     alignment and function description
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1 Back     alignment and function description
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2 Back     alignment and function description
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
389609837348 COP9 complex homolog subunit 5 [Papilio 0.621 0.801 0.886 1e-148
307198064378 COP9 signalosome complex subunit 5 [Harp 0.623 0.740 0.875 1e-148
307165958346 COP9 signalosome complex subunit 5 [Camp 0.623 0.809 0.879 1e-147
332028446345 COP9 signalosome complex subunit 5 [Acro 0.623 0.811 0.875 1e-147
223890174348 JAB-MPN domain protein [Bombyx mori] gi| 0.632 0.816 0.864 1e-147
350403594344 PREDICTED: COP9 signalosome complex subu 0.623 0.813 0.875 1e-147
66554150344 PREDICTED: COP9 signalosome complex subu 0.623 0.813 0.875 1e-147
340722877344 PREDICTED: COP9 signalosome complex subu 0.623 0.813 0.875 1e-147
357621207397 JAB-MPN domain protein [Danaus plexippus 0.621 0.702 0.889 1e-147
383850228345 PREDICTED: COP9 signalosome complex subu 0.623 0.811 0.872 1e-146
>gi|389609837|dbj|BAM18530.1| COP9 complex homolog subunit 5 [Papilio xuthus] Back     alignment and taxonomy information
 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/282 (88%), Positives = 264/282 (93%), Gaps = 3/282 (1%)

Query: 157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 216
           PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK+DAN+MIVMD+FALPVEGTETRVN
Sbjct: 53  PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVN 112

Query: 217 AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI 276
           AQAQAYEYMTAYIEAAK+VGR ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI
Sbjct: 113 AQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI 172

Query: 277 VIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSY 336
           VIDPVRTISAGKVCLG+FRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSL+VSY
Sbjct: 173 VIDPVRTISAGKVCLGAFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLEVSY 232

Query: 337 FKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRN-FLI- 394
           FKSSLDRRLLDSLWNKYWVNTLSSSSL+TNADY TGQ+ DLSDKLEQ+E  L R  FL+ 
Sbjct: 233 FKSSLDRRLLDSLWNKYWVNTLSSSSLITNADYTTGQIFDLSDKLEQSEVCLSRGVFLVA 292

Query: 395 -SESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFN 435
            ++  E+R E KL KATKD CKTTIE IHGLMAQMIK +LFN
Sbjct: 293 GADPHEKRSEDKLSKATKDACKTTIEVIHGLMAQMIKDRLFN 334

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307198064|gb|EFN79117.1| COP9 signalosome complex subunit 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307165958|gb|EFN60285.1| COP9 signalosome complex subunit 5 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332028446|gb|EGI68489.1| COP9 signalosome complex subunit 5 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|223890174|ref|NP_001138802.1| JAB-MPN domain protein [Bombyx mori] gi|221579605|gb|ACM24339.1| JAB-MPN domain protein [Bombyx mori] Back     alignment and taxonomy information
>gi|350403594|ref|XP_003486847.1| PREDICTED: COP9 signalosome complex subunit 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|66554150|ref|XP_623836.1| PREDICTED: COP9 signalosome complex subunit 5 isoform 2 [Apis mellifera] gi|380022707|ref|XP_003695180.1| PREDICTED: COP9 signalosome complex subunit 5-like [Apis florea] Back     alignment and taxonomy information
>gi|340722877|ref|XP_003399827.1| PREDICTED: COP9 signalosome complex subunit 5-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|357621207|gb|EHJ73122.1| JAB-MPN domain protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|383850228|ref|XP_003700698.1| PREDICTED: COP9 signalosome complex subunit 5-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
FB|FBgn0027053327 CSN5 "COP9 complex homolog sub 0.614 0.844 0.759 3.4e-116
UNIPROTKB|F1MBP8334 COPS5 "Uncharacterized protein 0.645 0.868 0.722 1.4e-112
UNIPROTKB|E2QWE0334 COPS5 "Uncharacterized protein 0.645 0.868 0.722 1.4e-112
UNIPROTKB|Q92905334 COPS5 "COP9 signalosome comple 0.645 0.868 0.722 1.4e-112
UNIPROTKB|F2Z540334 COPS5 "Uncharacterized protein 0.645 0.868 0.722 1.4e-112
MGI|MGI:1349415334 Cops5 "COP9 (constitutive phot 0.645 0.868 0.722 1.4e-112
RGD|1310301334 Cops5 "COP9 signalosome subuni 0.645 0.868 0.722 1.4e-112
ZFIN|ZDB-GENE-040426-1686334 cops5 "COP9 constitutive photo 0.645 0.868 0.718 2.2e-112
UNIPROTKB|Q5ZLC3338 COPS5 "Uncharacterized protein 0.645 0.857 0.718 2.9e-112
TAIR|locus:2032288358 CSN5B "COP9-signalosome 5B" [A 0.663 0.832 0.623 4.4e-100
FB|FBgn0027053 CSN5 "COP9 complex homolog subunit 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 212/279 (75%), Positives = 240/279 (86%)

Query:   157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 216
             PHFFKDIKISALALLKMVMHARSGGTLEVMGL+LGK++ N+MIVMDAFALPVEGTETRVN
Sbjct:    46 PHFFKDIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVN 105

Query:   217 AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI 276
             AQAQAYEYMTAY+EAAKEVGR+E+A+GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPFVAI
Sbjct:   106 AQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAI 165

Query:   277 VIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSY 336
             V+DPVRT+SAGKVCLG+FRTYPKGYKP NEEPSEYQTIPLNKIEDFGVHCKQYY L++SY
Sbjct:   166 VVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIPLNKIEDFGVHCKQYYPLEISY 225

Query:   337 FKXXXXXXXXXXXWNKYWVNTXXXXXXXTNADYLTGQMCDLSDKLEQAESALVRNFLISE 396
             FK           WNKYWVNT       TN +Y TGQ+ DLS+KLEQ+E+ L R    ++
Sbjct:   226 FKSALDRRLLDSLWNKYWVNTLGSSGLLTNTEYTTGQIMDLSEKLEQSENFLGRG---TD 282

Query:   397 SQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFN 435
               E+R E KL KAT+DC ++TIE IHGLMAQ++K +LFN
Sbjct:   283 VNEKRSEDKLSKATRDCSRSTIELIHGLMAQIVKDKLFN 321
GO:0005515 "protein binding" evidence=IPI
GO:0008180 "signalosome" evidence=ISS;NAS;IMP;IDA;TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0008347 "glial cell migration" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP;TAS
GO:0007409 "axonogenesis" evidence=IMP
GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP
GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP
GO:0000338 "protein deneddylation" evidence=IMP
GO:0019781 "NEDD8 activating enzyme activity" evidence=IMP
GO:0048477 "oogenesis" evidence=TAS
GO:0050821 "protein stabilization" evidence=IMP
GO:0045787 "positive regulation of cell cycle" evidence=IMP
GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
UNIPROTKB|F1MBP8 COPS5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWE0 COPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q92905 COPS5 "COP9 signalosome complex subunit 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z540 COPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1349415 Cops5 "COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310301 Cops5 "COP9 signalosome subunit 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1686 cops5 "COP9 constitutive photomorphogenic homolog subunit 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLC3 COPS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2032288 CSN5B "COP9-signalosome 5B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PC30CSN5_DANRE3, ., 4, ., -, ., -0.76680.64810.8712yesN/A
Q9FVU9CSN5A_ARATH3, ., 4, ., -, ., -0.66660.66360.8324yesN/A
Q92905CSN5_HUMAN3, ., 4, ., -, ., -0.77020.64810.8712yesN/A
Q6C703CSN5_YARLI3, ., 4, ., -, ., -0.49340.63020.7994yesN/A
Q4IJM4CSN5_GIBZE3, ., 4, ., -, ., -0.51210.63250.8352yesN/A
P91001CSN5_CAEEL3, ., 4, ., -, ., -0.60820.63250.7717yesN/A
Q5BBF1CSN5_EMENI3, ., 4, ., -, ., -0.57690.63020.8447yesN/A
O35864CSN5_MOUSE3, ., 4, ., -, ., -0.77020.64810.8712yesN/A
Q4WZP2CSN5_ASPFU3, ., 4, ., -, ., -0.56200.61910.8323yesN/A
Q54PF3CSN5_DICDI3, ., 4, ., -, ., -0.66780.62580.8463yesN/A
P0CQ24CSN5_CRYNJ3, ., 4, ., -, ., -0.48070.63250.7654yesN/A
Q6P635CSN5_XENTR3, ., 4, ., -, ., -0.76350.64810.8712yesN/A
Q6GLM9CSN5_XENLA3, ., 4, ., -, ., -0.76350.64810.8765N/AN/A
Q6BMQ3CSN5_DEBHA3, ., 4, ., -, ., -0.53900.52330.5010yesN/A
Q9XZ58CSN5_DROME3, ., 4, ., -, ., -0.80280.62580.8593yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 1e-146
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 2e-44
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 2e-38
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 3e-36
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 7e-23
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 2e-18
COG1310134 COG1310, COG1310, Predicted metal-dependent protea 3e-16
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 2e-13
cd08068244 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3 5e-13
cd08067187 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histo 1e-11
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 3e-11
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 3e-09
pfam1446498 pfam14464, Prok-JAB, Prokaryotic homologs of the J 2e-05
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 2e-05
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 3e-05
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 6e-05
cd08070128 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) d 4e-04
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 6e-04
pfam03665195 pfam03665, UPF0172, Uncharacterized protein family 0.003
pfam03665195 pfam03665, UPF0172, Uncharacterized protein family 0.003
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information 
 Score =  417 bits (1073), Expect = e-146
 Identities = 155/266 (58%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 216
           P +F+ + IS+LALLKM+ HAR+GG +EVMGL+LGK+D  ++IV+D FALPVEGTETRVN
Sbjct: 6   PDYFEKVYISSLALLKMLKHARAGGPIEVMGLMLGKVDDYTIIVVDVFALPVEGTETRVN 65

Query: 217 AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI 276
           AQ +  EYM  Y E  K+ GR EN +GWYHSHPGYGCWLSGIDV+TQ LNQ  Q+PFVA+
Sbjct: 66  AQDEFQEYMVQY-EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQDPFVAV 124

Query: 277 VIDPVRTISAGKVCLGSFRTYPKGYKP--ANEEPSEYQTIPLNKIEDFGVHCKQYYSLDV 334
           V+DP+R++  GKV +G+FRT P GYKP    +  S    +P  KIEDFG H KQYYSL +
Sbjct: 125 VVDPIRSLVKGKVVIGAFRTIPPGYKPLEPRQTTSNIGHLPKPKIEDFGGHNKQYYSLPI 184

Query: 335 SYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNA-DYLTGQMCDLSDKLEQAESALVRNFL 393
            YFKSSLDR+LL +LWNKYWVNTLS S LL N+ +Y   Q+ DL++KLE+AE    R  L
Sbjct: 185 EYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENSNEYTIKQILDLAEKLEKAEQQEER--L 242

Query: 394 ISESQERRPETKLMKATKDCCKTTIE 419
             E  +     KL KA +D  K  +E
Sbjct: 243 TGEELDIANVGKLDKA-RDSSKIHLE 267

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|224229 COG1310, COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>gnl|CDD|163698 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|222766 pfam14464, Prok-JAB, Prokaryotic homologs of the JAB domain Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163701 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172) Back     alignment and domain information
>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
KOG1554|consensus347 100.0
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 100.0
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.97
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 99.97
KOG1555|consensus316 99.95
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.95
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.95
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.94
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.94
KOG1560|consensus339 99.93
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.93
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.92
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.91
KOG2975|consensus288 99.89
PLN03246303 26S proteasome regulatory subunit; Provisional 99.89
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.88
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.87
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.85
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 99.82
KOG1554|consensus347 99.72
KOG1556|consensus309 99.71
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 99.64
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 99.62
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 99.53
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 99.37
KOG2880|consensus424 99.35
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 99.27
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 99.17
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 99.1
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.1
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.1
TIGR03735192 PRTRC_A PRTRC system protein A. A novel genetic sy 99.02
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 98.98
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 98.95
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 98.95
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 98.91
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 98.58
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 98.42
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 98.34
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 98.32
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 98.28
KOG1555|consensus316 98.27
KOG3050|consensus299 97.96
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 97.93
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 97.92
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 97.56
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 97.53
PF05021306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 97.42
PLN03246303 26S proteasome regulatory subunit; Provisional 97.4
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 97.35
KOG3289|consensus199 97.15
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 96.86
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 96.02
KOG1560|consensus339 95.19
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 93.81
KOG2975|consensus288 93.38
KOG3289|consensus199 92.94
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 89.71
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 84.11
KOG2834|consensus510 83.96
KOG1556|consensus309 80.65
cd08071113 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 80.43
>KOG1554|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-106  Score=784.93  Aligned_cols=324  Identities=71%  Similarity=1.174  Sum_probs=306.6

Q ss_pred             hHHHHhccccccCccccccccccccCCHHHHHHHHHcCCCCCCCCccceeeehHHHHHHHHHhhhcCCCeeEEeeecccc
Q psy1714          24 SQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI  103 (449)
Q Consensus        24 ~~~~~~~~~~~n~~~~~~~~d~~~~~d~~~~~~~~~~~pw~~~p~~f~~v~is~~a~~km~~ha~~g~~~evmg~~~g~~  103 (449)
                      +.+|+++||++||++.++..|.||+||.+.+.++..++||++||+||++|+||||||+||++||++||+|||||+|+||+
T Consensus         6 s~~~~k~we~en~~~~~~~~deif~yd~~sq~~~~~~kpw~~Dp~~fk~vkISalAllKm~~hA~~GgnlEiMGlm~Gkv   85 (347)
T KOG1554|consen    6 SYTAQKTWELENNIQSVESEDEIFRYDQKSQRKIILEKPWSTDPHYFKHVKISALALLKMVMHARSGGNLEIMGLMQGKV   85 (347)
T ss_pred             ccchhHHHHHhhhhccCccchhhhhcCHHHHHHHHhcCcccCCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEeeecccc
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEeeccccccCCcccccchhhhHHHHHHHHHHHhcccccccccccccCCCCceeEEECHHHHHHHHHHHhcCCCc
Q psy1714         104 DANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTL  183 (449)
Q Consensus       104 ~~~~~~v~d~~~lpv~g~e~~vna~~~~~~~m~~~~~~~~~vr~~e~i~w~~~p~~~~~V~Is~~vLlkIl~Ha~~~~p~  183 (449)
                      ++++|||||+|+|||||||||||||++||||||+|++..++                                       
T Consensus        86 ~g~t~IvmD~FaLPVeGTETRVNAq~~AyEYmv~Y~e~~k~---------------------------------------  126 (347)
T KOG1554|consen   86 DGDTIIVMDSFALPVEGTETRVNAQAEAYEYMVQYIEEAKN---------------------------------------  126 (347)
T ss_pred             cCCeEEEEeccccccccccceechHHHHHHHHHHHHHHHHH---------------------------------------
Confidence            99999999999999999999999999999999999876542                                       


Q ss_pred             eeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCcccHhhHHhH
Q psy1714         184 EVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQ  263 (449)
Q Consensus       184 EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvgr~e~VVGWYHSHP~~~~~pS~iDI~tQ  263 (449)
                                                                         +||.+++||||||||+|+||+|++||.||
T Consensus       127 ---------------------------------------------------~gr~envVGWyHSHPgYgCWLSgIDVsTQ  155 (347)
T KOG1554|consen  127 ---------------------------------------------------VGRLENVVGWYHSHPGYGCWLSGIDVSTQ  155 (347)
T ss_pred             ---------------------------------------------------hhhhhceeeeeecCCCCCccccCcchhHH
Confidence                                                               25678999999999999999999999999


Q ss_pred             HhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCCCCCCCCccccccchhhhccccccceEEeeeeEEeeCHHHH
Q psy1714         264 MLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDR  343 (449)
Q Consensus       264 ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~~~~~~~e~~siPl~ki~~~g~~~~~yy~L~V~~~~S~ld~  343 (449)
                      .++|++++||||+||||.||.+.|++.|+|||++|.||+||++.|++|++||+.||+|||+||.+||+|+|+||+|.+|.
T Consensus       156 ~lNQ~fQePfvAvViDP~Rtlsagkv~iGAFRTyp~gyk~~d~~~seyqtipl~kied~gvHck~yysl~isyfks~ld~  235 (347)
T KOG1554|consen  156 MLNQRFQEPFVAVVIDPTRTLSAGKVNIGAFRTYPKGYKPPDEPPSEYQTIPLNKIEDFGVHCKQYYSLEISYFKSSLDM  235 (347)
T ss_pred             HHhhhhcCCeEEEEecCccccccCceeeceeecccCCCCCCCCCchhhhccchhhhhhcccceEEeeccchhhhhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHhhhccCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCc--hhhhHHHhhhhhHHHHHHH
Q psy1714         344 RLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRP--ETKLMKATKDCCKTTIECI  421 (449)
Q Consensus       344 ~~L~~L~~~~W~~~Ls~s~l~~n~~~~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~  421 (449)
                      ++|+.||++||+++|+++|+++|.+|+++|+.||+.|+.|++.+++++.   ...+++.  +.+|+|+++|+++...|+.
T Consensus       236 kll~~Lwnkywv~Tlsss~ll~N~dy~~~qi~d~~ekl~q~~~~l~~s~---~~~d~~~ed~~~l~k~~~Ds~~~~~e~~  312 (347)
T KOG1554|consen  236 KLLELLWNKYWVRTLSSSPLLKNIDYLNGQIRDLSEKLEQREDSLETSD---NTHDRKSEDENLLAKATRDSSKCTNELI  312 (347)
T ss_pred             HHHHHHHhhhhhcccccccccccchhhcchhhhHHHHHHhhhhhcccCc---ccccccccchhhhhhhhhhhhhhhhcch
Confidence            9999999999999999999999999999999999999999999998772   2333333  3459999999999999999


Q ss_pred             HhHHHHHHHHHHhCCCCCC
Q psy1714         422 HGLMAQMIKQQLFNHNMKH  440 (449)
Q Consensus       422 ~~~~~~~~k~~~~~~~~~~  440 (449)
                      +|||+++||++||+.....
T Consensus       313 ~gl~s~vvkd~lf~~~~~~  331 (347)
T KOG1554|consen  313 HGLMSQVVKDKLFNDNFHS  331 (347)
T ss_pred             hHHHHHHHHHHHHHhhccc
Confidence            9999999999999965443

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>KOG1555|consensus Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>KOG1560|consensus Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>KOG1554|consensus Back     alignment and domain information
>KOG1556|consensus Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>KOG2880|consensus Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>TIGR03735 PRTRC_A PRTRC system protein A Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>KOG1555|consensus Back     alignment and domain information
>KOG3050|consensus Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>KOG3289|consensus Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>KOG1560|consensus Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>KOG3289|consensus Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>KOG2834|consensus Back     alignment and domain information
>KOG1556|consensus Back     alignment and domain information
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
4f7o_A257 Crystal Structure Of Csn5 Length = 257 3e-88
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 4e-31
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 3e-06
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 2e-04
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 2e-04
2znr_A178 Crystal Structure Of The Dub Domain Of Human Amsh-L 6e-04
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5 Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 175/215 (81%), Gaps = 3/215 (1%)
Query: 146 RHQEVI---PLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMD 202
           + QE++   P T   H+FK  KISALALLK V HARSGG LEV GL LGK+D  + I+ D
Sbjct: 35  QQQEILAAKPWTKDHHYFKYCKISALALLKXVXHARSGGNLEVXGLXLGKVDGETXIIXD 94
Query: 203 AFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVST 262
           +FALPVEGTETRVNAQA AYEY  AYIE AK+VGRLENAIGWYHSHPGYGCWLSGIDVST
Sbjct: 95  SFALPVEGTETRVNAQAAAYEYXAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVST 154
Query: 263 QMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDF 322
           Q LNQ FQEPFVA+VIDP RTISAGKV LG+FRTYPKGYKP +E PSEYQTIPLNKIEDF
Sbjct: 155 QXLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDF 214
Query: 323 GVHCKQYYSLDVSYFKXXXXXXXXXXXWNKYWVNT 357
           GVHCKQYY+L+VSYFK           WNKYWVNT
Sbjct: 215 GVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNT 249
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 3e-47
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 2e-21
2znr_A178 AMSH-like protease; metal binding protein, alterna 4e-43
2znr_A178 AMSH-like protease; metal binding protein, alterna 2e-17
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 2e-36
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 3e-17
2kks_A146 Uncharacterized protein; NESG, structural genomics 7e-29
2kks_A146 Uncharacterized protein; NESG, structural genomics 6e-12
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 2e-26
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 2e-13
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 3e-25
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 2e-04
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 4e-04
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
 Score =  160 bits (407), Expect = 3e-47
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 26/171 (15%)

Query: 157 PHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETR 214
               + + +      + +  A +     +   G+L GK+  N   +              
Sbjct: 38  IDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDY 97

Query: 215 VNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFV 274
            N + +   ++        +  +    +GW H+HP    +LS +D+ T    Q      V
Sbjct: 98  CNTENEEELFL-------IQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESV 150

Query: 275 AIVIDPVRTISAGKVCLGSFRTYPKGYK-----------PANEEPSEYQTI 314
           AIV  P           G F+    G +           P +++P  + + 
Sbjct: 151 AIVCSPKFQE------TGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSC 195
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Length = 124 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 100.0
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.97
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.94
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.94
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.92
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.9
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 99.89
2kks_A146 Uncharacterized protein; NESG, structural genomics 99.88
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 99.76
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 99.75
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.34
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.27
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 99.18
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 99.08
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 98.61
2znr_A178 AMSH-like protease; metal binding protein, alterna 98.61
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 98.37
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 98.33
2kks_A146 Uncharacterized protein; NESG, structural genomics 98.2
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 98.1
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 97.58
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1e-52  Score=420.43  Aligned_cols=267  Identities=30%  Similarity=0.508  Sum_probs=204.0

Q ss_pred             CCCceeEEECHHHHHHHHHHHhcCCCceeEEEEeeee-cCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHh
Q psy1714         157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI-DANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEV  235 (449)
Q Consensus       157 p~~~~~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~-d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkv  235 (449)
                      ++++++|+|+++||++|++||+++.|.||||+|+|.+ ++.+++|++|||+|+.++++++++.  +.+|+.+|+++++++
T Consensus        21 ~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~--d~~y~~~m~~~~~~v   98 (306)
T 4b4t_V           21 DDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAV--DDVFQAKMMDMLKQT   98 (306)
T ss_dssp             CSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECC--CHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcC--CHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999985 5568999999999999999998765  346899999999999


Q ss_pred             CCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCCCCCCCC----cc
Q psy1714         236 GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPS----EY  311 (449)
Q Consensus       236 gr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~~~~~~~----e~  311 (449)
                      |+++++||||||||+++||||++||+||..||.+.+++|+|||||.++. +|++.|+|||++|.++.+...+++    .+
T Consensus        99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~  177 (306)
T 4b4t_V           99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDTGALINNLEPRQTTSNT  177 (306)
T ss_dssp             SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHHHHHHCCCCCSCC----
T ss_pred             CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCccccccccCcccccccc
Confidence            9999999999999999999999999999999999999999999999986 799999999999977665444443    34


Q ss_pred             ccccchhhhccccc-cceEEeeeeEEeeCHHHHHHHHHhhhhhhHhhhccCcccccHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1714         312 QTIPLNKIEDFGVH-CKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVR  390 (449)
Q Consensus       312 ~siPl~ki~~~g~~-~~~yy~L~V~~~~S~ld~~~L~~L~~~~W~~~Ls~s~l~~n~~~~~~~i~dl~~~~~~~~~~~~~  390 (449)
                      +.+|..++++++.+ +++||+|+|+|+++++|+++|+.||+++|..+|+++++.++.++..+++.++.+..++....+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~  257 (306)
T 4b4t_V          178 GLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEE  257 (306)
T ss_dssp             ------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             cccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            55677778888765 46799999999999999999999999999999999999999999999998887766655444321


Q ss_pred             cccccccccCCchhhhHH--H-hhhhhHHHHHHHHhHHHHHHHHHH
Q psy1714         391 NFLISESQERRPETKLMK--A-TKDCCKTTIECIHGLMAQMIKQQL  433 (449)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~e~~~~~~~~~~k~~~  433 (449)
                      .       .+..++++..  + ..|++|...|....||...|++.|
T Consensus       258 e-------~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l  296 (306)
T 4b4t_V          258 E-------KELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVL  296 (306)
T ss_dssp             H-------HHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHH
T ss_pred             c-------ccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHH
Confidence            1       1112233322  1 358888988999999999988876
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 2e-11
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 6e-05
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 17/101 (16%)

Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 222
           +KIS   L  ++  A+S    E + LL G  D    ++ +   LP               
Sbjct: 4   MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSAVIHLDML 59

Query: 223 EYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQ 263
                               G  HSHP   C  S  D+S  
Sbjct: 60  PIG-------------MKVFGTVHSHPSPSCRPSEEDLSLF 87
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 99.72
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 93.81
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.72  E-value=5.1e-18  Score=146.36  Aligned_cols=108  Identities=21%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             eEEECHHHHHHHHHHHhcCCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhCCCCce
Q psy1714         162 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENA  241 (449)
Q Consensus       162 ~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvgr~e~V  241 (449)
                      +++|+..++.+|+.||++..|.|+||+|+|..+    .|+..+++|+...+... .+      ..   +. ++  +++++
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~~----~i~~~~~~~n~~~~~~~-~~------~~---~~-~~--~~~~i   65 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSA-VI------HL---DM-LP--IGMKV   65 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred             eEEECHHHHHHHHHHHHhcCCceeEEEEEecCC----cEEEEEEcCCCCCCccc-cc------cc---ch-hh--cCCeE
Confidence            589999999999999999999999999999642    57788999986543321 11      11   11 12  57999


Q ss_pred             EEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEE
Q psy1714         242 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFR  295 (449)
Q Consensus       242 VGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFR  295 (449)
                      ||||||||+.+++||..|+.++.     .++.+++|+++-.    +...++||+
T Consensus        66 vgi~HSHP~~~a~PS~~D~~~~~-----~~g~~~~Ivs~p~----~~~~~~~~~  110 (121)
T d1oi0a_          66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYN  110 (121)
T ss_dssp             EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEE
T ss_pred             EEEEEecCCCCCCcCHHHHHhhh-----ccCCEEEEEeCCC----CCCCEEEEe
Confidence            99999999999999999998753     3578999999642    223578886
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure