Psyllid ID: psy17175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MDLTYSGPCSNPIQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHEEEEcccccccEEEccccccccccccEEEccccHHHHHHHHHccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEccccccccccccccccccccccHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHEEEEEcccccccEEcHHHHHHHccccccccccccccccccEEEEEEEEcccccccHHHHHccccccccccccEEEEEEEEEEccccccccccccccccHHHHHEHcccHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccEEEEEEEEcccccccHHHHHccccccccccccEEEEEEEEEcHHHHHHHHHcccccccccccccHHHHHHHHHHHcHHccc
Coil and Loop (DISEMBL)
mdltysgpcsnpiqtdfgpcmLFEVKHslnegssrgLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIghtrlthnhlftktdpplcqcgaalsVRHILSchtkidpplcqcgaalSVRHILFChqhdnaagVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWqnqwnhipntnklkviKPTIEYWSTSNQNKRFQEVILTRMRIghtrlthnhlftkidpplcqcgaalSVRHILFCHQhvnirnsldtppslednaaGVESLFLYLQRLNLYHMV
Flexible Loop (DISEMBL)
mdltysgpcsnpiqTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIeywstsnqnkRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNqwnhipntnklkVIKPTIEYwstsnqnkrFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Low Complexity Region (SEG)
MDLTYSGPCSNPIQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Disordered region (IsUnstruct)
************IQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLD*******NAAGVESLFLYLQRLNLYH**
Disordered Region (DISOPRED)
*************QTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESL*LLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Disordered Region (DISEMBL)
********CSNPIQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Disordered Region (DISPRO)
**LTYSGPCSNPIQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLTYSGPCSNPIQTDFGPCMLFEVKHSLNEGSSRGLCQYYLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCGAALSVRHILSCHTKIDPPLCQCGAALSVRHILFCHQHDNAAGVESLFLLNAVLNSWIYKLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLCQCGAALSVRHILFCHQHVNIRNSLDTPPSLEDNAAGVESLFLYLQRLNLYHMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
328721829	152	PREDICTED: hypothetical protein LOC10057	0.385	0.723	0.366	2e-12
270002674	321	hypothetical protein TcasGA2_TC005227 [T	0.378	0.336	0.391	7e-12
427791807	1212	Putative tick transposon, partial [Rhipi	0.308	0.072	0.433	1e-11
427791321	1210	Putative tick transposon, partial [Rhipi	0.308	0.072	0.433	1e-11
270015744	879	hypothetical protein TcasGA2_TC004345 [T	0.319	0.103	0.437	3e-11
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.410	0.292	0.344	6e-11
328696858	206	PREDICTED: hypothetical protein LOC10056	0.463	0.640	0.340	8e-11
328720146	164	PREDICTED: hypothetical protein LOC10056	0.336	0.585	0.415	1e-10
427798889	1199	Putative tick transposon, partial [Rhipi	0.301	0.071	0.438	1e-10
189242251	1808	PREDICTED: similar to pol-like protein [	0.336	0.053	0.41	3e-10

>gi|328721829|ref|XP_003247415.1| PREDICTED: hypothetical protein LOC100572018 [Acyrthosiphon pisum]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 155 TTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIG 214
           T++DL       I + WQN W+ I  +NKL+++K T+  W+ S    R ++ I+ R RIG
Sbjct: 18  TSKDLINEAQKSILASWQNHWDDILTSNKLRIVKKTVSKWTYSENASRREQTIINRARIG 77

Query: 215 HTRLTHNHLFTKIDPPLCQ-CGAALSVRHILF-CHQHVNIRNSLDTPPSLED 264
           H+ +TH++L TK   P C  C   L++ HI+  C +  + R+ L  P SLE+
Sbjct: 78  HSNITHSYLITKEPRPNCDTCNTPLTIEHIIINCPKFASSRHLLKNPSSLEE 129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 7/115 (6%)

Query: 171 WQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPP 230
           +Q  WN   +T KL+   P I+ W++SN  KR +EV + R+R+ HTRLT  +   K+DPP
Sbjct: 206 FQQHWNQ--STAKLREAYPNIKKWASSNL-KRGEEVTINRLRLRHTRLTQEYHLKKVDPP 262

Query: 231 L-CQCGAALSVRHILF-CHQHVNIRNSLDTPPSLED--NAAGVESLFLYLQRLNL 281
             C C   L+VRHIL  C ++ +IRN  + P  +ED  +    + + ++L+R NL
Sbjct: 263 TCCYCEERLTVRHILLECPKYHDIRNEANFPNRMEDILSPKNEDKILIFLKRTNL 317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 157  EDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHT 216
            +D +  I   + ++WQ QW+    +NKL ++KPT+  W      +RF EVIL R+RIGHT
Sbjct: 1073 KDSQRTIRLALLAKWQQQWDSC-TSNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHT 1131

Query: 217  RLTHNHLFTKIDPPLCQ-CGAALSVRHILF 245
             LTHN L TK + P+C+ C   L++ HIL 
Sbjct: 1132 HLTHNFLLTKEEQPMCEKCQEPLTLIHILI 1161

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 157  EDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHT 216
            +D +  I   + ++WQ QW+    +NKL ++KPT+  W      +RF EVIL R+RIGHT
Sbjct: 1070 KDSQRTIRLALLAKWQQQWDSC-TSNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHT 1128

Query: 217  RLTHNHLFTKIDPPLCQ-CGAALSVRHILF 245
             LTHN L TK + P+C+ C   L++ HIL 
Sbjct: 1129 HLTHNFLLTKEEQPMCEKCQEPLTLIHILI 1158

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015744|gb|EFA12192.1| hypothetical protein TcasGA2_TC004345 [Tribolium castaneum]

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 171 WQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPP 230
           +Q  WN   +T KL+   P I+ W  SN  KR +EV + R+R+GHTRLT  +   K+DPP
Sbjct: 455 FQQHWNQ--STAKLREAYPDIKKWPPSNL-KRGEEVTINRLRLGHTRLTQEYHLKKVDPP 511

Query: 231 L-CQCGAALSVRHILF-CHQHVNIRNSLDTPPSLED 264
             C C   L+VRHIL  C ++ +IRN  + P  +ED
Sbjct: 512 TCCYCEGRLTVRHILLECPKYHDIRNEANFPNRMED 547

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 126 FCHQHDNAAGVESLFLLNAVLNSWIYKLCT----TEDLKPFISFLITSEWQNQWNHIPNT 181
           +C  H    G E   LL     +  +  CT    + D KP        +WQ QW+     
Sbjct: 105 WCPSHVGVMGNERADLLAK--EALSFTTCTIRIPSSDFKPITHEFYKEKWQEQWSS-EQE 161

Query: 182 NKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKIDPPLC-QCGAALSV 240
           NKL  I+PT+  W+ S++  R +E++L R RIGH+ LTH +L  +  PP+C  C   LS+
Sbjct: 162 NKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQNILSI 221

Query: 241 RHILF 245
           +HI  
Sbjct: 222 KHIFI 226

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 152 KLCTTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRM 211
           K CT ED    I+  I  +W  +W       KL  IK T + W   +   R +EVILTR+
Sbjct: 68  KYCTYEDTLRCINTAIEEKWSLKWRR--KETKLSEIKRTTDRWKNKSNLNRKEEVILTRL 125

Query: 212 RIGHTRLT-HNHLFTKIDPPLCQ-CGAALSVRHILF-CHQHVNIRNSLDTPP----SLED 264
           RIGHTR T H +L ++ D P C  CG  L+++HIL  C Q    R     P     SL  
Sbjct: 126 RIGHTRYTLHGYLMSREDQPTCATCGVHLTIKHILVECRQTEAARTKYSIPEFLYQSLGP 185

Query: 265 NAAGVESLFLYLQRLNLYHMV 285
           N + ++     ++ L + +++
Sbjct: 186 NESAIKQTLNLIKELEIENLL 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial [Acyrthosiphon pisum]

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 155 TTEDLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIG 214
           T ED K  I  ++  +W  QW  I    KL  IK  I+ W     N++ +E IL R+RIG
Sbjct: 42  TYEDKKKQIKQVLDQKWLIQW--INQHTKLNQIKNNIQTWKNPGLNRK-EETILNRLRIG 98

Query: 215 HTRLTHNHLFTKIDPPLCQ-CGAALSVRHILF-CHQHVNIR 253
           HT +TH HL  K DPP+C+ CG  L+V+HI+  C ++ ++R
Sbjct: 99  HTFITHRHLMEKNDPPICEMCGVDLTVKHIITECRKYDDMR 139

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 158  DLKPFISFLITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTR 217
            DLKP++   I + WQ+ W+   + NKL VIKP + +W   +++ R+ EV LTR+R GHT 
Sbjct: 1099 DLKPYLKRKIRAYWQSTWDRQTH-NKLHVIKPQLGHWPPISKS-RYTEVTLTRLRTGHTH 1156

Query: 218  LTHNHLFTKIDPPLC-QCGAALSVRHILF 245
             TH +L +  D P C +CG  L+V HIL 
Sbjct: 1157 STHAYLLSGGDAPFCDKCGEPLTVIHILI 1185

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242251|ref|XP_001808188.1| PREDICTED: similar to pol-like protein [Tribolium castaneum]

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 167  ITSEWQNQWNHIPNTNKLKVIKPTIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTK 226
            +T++ Q  +   P + KL+   P I+ W  SN  KR +EV + R+R+GHTRLT  +   K
Sbjct: 1379 VTNDTQQAFRLSPES-KLREAYPDIKKWPPSNL-KRGEEVTINRLRLGHTRLTQEYHLKK 1436

Query: 227  IDPPL-CQCGAALSVRHILF-CHQHVNIRNSLDTPPSLED 264
            +DPP  C C   L+VRHIL  C ++ +IRN  + P  +ED
Sbjct: 1437 VDPPTCCYCEGRLTVRHILLECPKYHDIRNEANFPNRMED 1476

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	97.11
PRK08719	147	ribonuclease H; Reviewed	97.04
PRK00203	150	rnhA ribonuclease H; Reviewed	96.78
PRK06548	161	ribonuclease H; Provisional	96.61
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	95.64
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	95.01
KOG3752|consensus	371		92.21
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	88.16

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=97.11  E-value=0.00018  Score=57.89  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.4

Q ss_pred             cccccceeeeecCCCCc-CcchhHHhh
Q psy17175        117 AALSVRHILFCHQHDNA-AGVESLFLL  142 (285)
Q Consensus       117 ~~~~vr~~~WIPGH~gI-pGNE~AD~~  142 (285)
                      ....|+ |.|||||+|+ .|||.||++
T Consensus       101 ~~~~v~-~~~V~~H~~~~~~N~~aD~l  126 (132)
T PF00075_consen  101 RGIKVR-FRWVPGHSGVPQGNERADRL  126 (132)
T ss_dssp             HSSEEE-EEESSSSSSSHHHHHHHHHH
T ss_pred             cceEEe-eeeccCcCCCchhHHHHHHH
Confidence            355675 9999999999 599999987

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>PRK08719 ribonuclease H; Reviewed

Probab=97.04  E-value=0.00028  Score=60.47  Aligned_cols=23  Identities=22%  Similarity=0.184  Sum_probs=20.7

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ |.|||||+|++|||.||++
T Consensus       118 ~~i~-~~~VkgH~g~~~Ne~aD~l  140 (147)
T PRK08719        118 KYVE-VEKVTAHSGIEGNEAADML  140 (147)
T ss_pred             CcEE-EEEecCCCCChhHHHHHHH
Confidence            4575 9999999999999999987

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=96.78  E-value=0.0006  Score=57.88  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=20.6

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..| ++.|||||+|++|||.||++
T Consensus       113 ~~v-~~~wV~~H~~~~~N~~AD~l  135 (150)
T PRK00203        113 HQI-KWHWVKGHAGHPENERCDEL  135 (150)
T ss_pred             Cce-EEEEecCCCCCHHHHHHHHH
Confidence            456 49999999999999999987

>PRK06548 ribonuclease H; Provisional

Probab=96.61  E-value=0.00085  Score=58.73  Aligned_cols=23  Identities=17%  Similarity=0.171  Sum_probs=20.8

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ |.||+||+|++|||.||++
T Consensus       113 ~~v~-~~wVkgHsg~~gNe~aD~L  135 (161)
T PRK06548        113 RNIR-MSWVNAHTGHPLNEAADSL  135 (161)
T ss_pred             CceE-EEEEecCCCCHHHHHHHHH
Confidence            3576 9999999999999999987

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=95.64  E-value=0.0052  Score=53.73  Aligned_cols=28  Identities=14%  Similarity=-0.052  Sum_probs=22.8

Q ss_pred             cccccc-ccceeeeecCCCCcCcchhHHhh
Q psy17175        114 QCGAAL-SVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       114 ~c~~~~-~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ++-+.. .| .+.|||||.|.++||.||++
T Consensus       110 ~~~~~~~~v-~~~WVkgH~g~~~NeraD~L  138 (154)
T COG0328         110 ELLKRHELV-FWEWVKGHAGHPENERADQL  138 (154)
T ss_pred             HHHhhCCeE-EEEEeeCCCCChHHHHHHHH
Confidence            444555 44 59999999999999999987

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=95.01  E-value=0.015  Score=44.18  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=21.4

Q ss_pred             cccccceeeeecCCCCcCcchhHHhh
Q psy17175        117 AALSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       117 ~~~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ....++ +.|||+|+++.+|+.||.+
T Consensus       101 ~~~~~~-i~~v~~h~~~~~n~~ad~l  125 (130)
T cd06222         101 RFHKVR-FEWVPGHSGIEGNERADAL  125 (130)
T ss_pred             CCCeEE-EEEcCCCCCCcchHHHHHH
Confidence            345565 9999999999999999987

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>KOG3752|consensus

Probab=92.21  E-value=0.076  Score=52.32  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=21.7

Q ss_pred             cccccceeeeecCCCCcCcchhHHhh
Q psy17175        117 AALSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       117 ~~~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ...+|+ +.|||||.||.|||+||.+
T Consensus       334 ~~~~vq-~~~V~Gh~gi~gne~Ad~l  358 (371)
T KOG3752|consen  334 SNKKVQ-QEYVGGHSGILGNEMADAL  358 (371)
T ss_pred             ccCceE-EEEecCcCCcchHHHHHHH
Confidence            456674 9999999999999999986

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=88.16  E-value=0.31  Score=37.55  Aligned_cols=26  Identities=27%  Similarity=0.698  Sum_probs=21.6

Q ss_pred             CCCCCCCc-cCCC-ccccceeec-cccch
Q psy17175        225 TKIDPPLC-QCGA-ALSVRHILF-CHQHV  250 (285)
Q Consensus       225 ~~~~~P~C-~CG~-~~Tv~HIl~-Cp~y~  250 (285)
                      +-..++.| .||. .||+.|+|. ||...
T Consensus        55 ~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   55 GIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             CCccCCccccCCCccccccceeccCcCcc
Confidence            33577999 9996 899999999 99754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 45/205 (21%)

Query: 36  GLCQYYLKVIKP--TIEYWSTSNQNKRFQEVILTRMRIGHTRLTHNHLFTKTDPPLCQCG 93
             C     V++    + Y    N   R       ++RI   +     L        C   
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--- 246

Query: 94  AAL-------SVRHI----LSCHTKI---DPPLCQCGAALSVRHILFCHQHDNAAGVESL 139
             L       + +      LSC   +      +    +A +  HI   H        E  
Sbjct: 247 --LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 140 FLLNAVLNSWIYKLCTTEDLK-------PFISFLI-------TSEWQNQWNHIPNTNKL- 184
            LL   L+      C  +DL        P    +I        + W N W H+ N +KL 
Sbjct: 305 SLLLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHV-NCDKLT 356

Query: 185 KVIKPTIEYWSTSNQNKRFQE-VIL 208
            +I+ ++     +   K F    + 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	97.22
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	97.21
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	97.07
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	97.02
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	97.02
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	96.95
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	96.78
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	96.71
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	95.97
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	95.94
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	95.19

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=97.22  E-value=9.2e-05  Score=61.90  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=22.1

Q ss_pred             cccccceeeeecCCCCcCcchhHHhh
Q psy17175        117 AALSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       117 ~~~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ....|. +.|||||.|++|||.||++
T Consensus       116 ~~~~v~-~~wV~gH~g~~~Ne~AD~L  140 (150)
T 3qio_A          116 KKEKVY-LAWVPAHKGIGGNEQVDKL  140 (150)
T ss_dssp             TCSEEE-EEECCTTSCCHHHHHHHHH
T ss_pred             hcCceE-EEEccCcCCChhHHHHHHH
Confidence            355675 9999999999999999997

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=97.21  E-value=6.6e-05  Score=62.23  Aligned_cols=22  Identities=5%  Similarity=-0.146  Sum_probs=20.5

Q ss_pred             ccceeeeecCCCCcCcchhHHhh
Q psy17175        120 SVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       120 ~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      .|+ +.|||||+|++|||.||+|
T Consensus       109 ~v~-~~wV~gH~g~~~Ne~AD~L  130 (147)
T 2kq2_A          109 IYS-FEKVKAHSGNEFNDYVDMK  130 (147)
T ss_dssp             TCC-BCCCCCCCCCHHHHHHHHH
T ss_pred             Cee-EEEecCcCCCcchHHHHHH
Confidence            675 9999999999999999997

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=97.07  E-value=0.00013  Score=59.67  Aligned_cols=23  Identities=13%  Similarity=-0.077  Sum_probs=19.7

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ +.|||||+|++|||.||+|
T Consensus       115 ~~v~-~~~V~gH~g~~~N~~AD~L  137 (146)
T 3h08_A          115 HRVT-FHKVKGHSDNPYNSRADEL  137 (146)
T ss_dssp             SEEE-EEECCC-CCSHHHHHHHHH
T ss_pred             CceE-EEEcCCcCCcHhHHHHHHH
Confidence            3575 9999999999999999987

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=97.02  E-value=0.00015  Score=60.64  Aligned_cols=23  Identities=17%  Similarity=0.072  Sum_probs=20.9

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ +.|||||+|++|||.||+|
T Consensus       116 ~~v~-~~wV~gH~g~~~Ne~AD~L  138 (158)
T 2e4l_A          116 HQID-WRWVKGHAGHAENERCDQL  138 (158)
T ss_dssp             SEEE-EEECCTTCCCHHHHHHHHH
T ss_pred             CcEE-EEEccCCCCchhHHHHHHH
Confidence            3675 9999999999999999987

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=97.02  E-value=0.00016  Score=60.28  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=20.9

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|. +.|||||+|++|||.||+|
T Consensus       114 ~~v~-~~wV~gH~g~~~Ne~AD~L  136 (155)
T 1jl1_A          114 HQIK-WEWVKGHAGHPENERADEL  136 (155)
T ss_dssp             CEEE-EEECCSSTTCHHHHHHHHH
T ss_pred             CceE-EEEcCCCCCCHHHHHHHHH
Confidence            4675 9999999999999999997

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=96.95  E-value=0.00019  Score=59.37  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|. +.|||||+|++|||.||+|
T Consensus       122 ~~v~-~~~V~~H~g~~~N~~AD~L  144 (154)
T 2qkb_A          122 MDIQ-WMHVPGHSGFIGNEEADRL  144 (154)
T ss_dssp             CEEE-EEECCTTSSCHHHHHHHHH
T ss_pred             CceE-EEEccCCCCCHhHHHHHHH
Confidence            3575 9999999999999999997

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=96.78  E-value=0.0003  Score=59.94  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             cccccceeeeecCCCC-----cCcchhHHhh
Q psy17175        117 AALSVRHILFCHQHDN-----AAGVESLFLL  142 (285)
Q Consensus       117 ~~~~vr~~~WIPGH~g-----IpGNE~AD~~  142 (285)
                      ....|. +.|||||.|     ++|||.||++
T Consensus       120 ~~~~v~-~~wVkgH~g~~~~~~~gNe~AD~L  149 (165)
T 3p1g_A          120 LPKRLS-IIHCPGHQKGNSAEARGNRMADQA  149 (165)
T ss_dssp             SBSEEE-EEECCSSCCSCSHHHHHHHHHHHH
T ss_pred             cCCceE-EEEecCCCCCCcCcchHHHHHHHH
Confidence            456785 999999999     9999999987

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=96.71  E-value=0.00032  Score=59.30  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ +.|||||+|++|||.||+|
T Consensus       119 ~~v~-~~wV~gH~g~~~Ne~AD~L  141 (166)
T 1ril_A          119 HRVR-FHFVKGHTGHPENERVDRE  141 (166)
T ss_dssp             SEEE-CCCCCGGGSCTHHHHHHHH
T ss_pred             CeEE-EEEeeCCCCchhHHHHHHH
Confidence            3675 9999999999999999987

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=95.97  E-value=0.002  Score=63.75  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.1

Q ss_pred             cccceeeeecCCCCcCcchhHHhhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLLN  143 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~~  143 (285)
                      ..|. +.|||||.|++|||.||++|
T Consensus       531 ~~v~-~~wV~~H~g~~~Ne~AD~LA  554 (557)
T 2zd1_A          531 EKVY-LAWVPAHKGIGGNEQVDKLV  554 (557)
T ss_dssp             SEEE-EEECCSSSCCTTCCGGGGCC
T ss_pred             CCEE-EEEcCCCCCChhHHHHHHHH
Confidence            4575 99999999999999999973

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=95.94  E-value=0.0024  Score=63.08  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=21.2

Q ss_pred             ccccceeeeecCCCCcCcchhHHhh
Q psy17175        118 ALSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       118 ~~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ...|+ +.|||||.|++|||.||++
T Consensus       527 ~~~v~-~~wV~~H~g~~~Ne~AD~L  550 (555)
T 1mu2_A          527 KEAIY-VAWVPAHKGIGGNQEVDHL  550 (555)
T ss_dssp             CSEEE-EEECCSSSCCTTHHHHHHH
T ss_pred             CCcEE-EEEEECCCCChhHHHHHHH
Confidence            34565 9999999999999999997

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=95.19  E-value=0.0046  Score=52.69  Aligned_cols=24  Identities=17%  Similarity=0.068  Sum_probs=20.0

Q ss_pred             ccccceeeeecCCCCc------CcchhHHhh
Q psy17175        118 ALSVRHILFCHQHDNA------AGVESLFLL  142 (285)
Q Consensus       118 ~~~vr~~~WIPGH~gI------pGNE~AD~~  142 (285)
                      ...|. +.|||||.|+      +|||.||+|
T Consensus       127 ~~~v~-~~~VkgH~g~~~~~~~~gNe~AD~L  156 (165)
T 2lsn_A          127 KPDIT-IQHEKGHQPTNTSIHTEGNALADKL  156 (165)
T ss_dssp             CTTCE-EEECCSSSCSSSCHHHHHHHHHHHH
T ss_pred             CCCEE-EEEEeCCCCccCCCCChHHHHHHHH
Confidence            34675 9999999995      589999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	97.85
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	97.69
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	97.66

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.7e-06  Score=68.59  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=21.0

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ |.|||||+|++|||.||+|
T Consensus       112 ~~V~-~~wV~gH~g~~gNe~AD~L  134 (152)
T d1jl1a_         112 HQIK-WEWVKGHAGHPENERADEL  134 (152)
T ss_dssp             CEEE-EEECCSSTTCHHHHHHHHH
T ss_pred             ceeE-EEEecccCCCccHHHHHHH
Confidence            4686 9999999999999999997

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=97.69  E-value=6.1e-06  Score=64.49  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             cccceeeeecCCCCcCcchhHHhhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLLN  143 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~~  143 (285)
                      ..|. |.|||||+|++|||.||+|+
T Consensus        99 ~~v~-~~wV~gH~g~~gNe~AD~LA  122 (126)
T d1mu2a1          99 EAIY-VAWVPAHKGIGGNQEVDHLV  122 (126)
T ss_dssp             SEEE-EEECCSSSCCTTHHHHHHHH
T ss_pred             ceeE-EEEEeCCCCCcchHHHHHHH
Confidence            3564 99999999999999999983

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=3.8e-06  Score=66.86  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             cccceeeeecCCCCcCcchhHHhh
Q psy17175        119 LSVRHILFCHQHDNAAGVESLFLL  142 (285)
Q Consensus       119 ~~vr~~~WIPGH~gIpGNE~AD~~  142 (285)
                      ..|+ |.|||||+|++|||.||+|
T Consensus       114 ~~v~-~~wVkgHsg~~gNe~AD~L  136 (147)
T d1rila_         114 HRVR-FHFVKGHTGHPENERVDRE  136 (147)
T ss_dssp             SEEE-CCCCCGGGSCTHHHHHHHH
T ss_pred             cccc-eEEccCCCCCcchHHHHHH
Confidence            4575 9999999999999999997